JP7046603B2 - 微生物を検出し同定するための方法およびデバイス - Google Patents
微生物を検出し同定するための方法およびデバイス Download PDFInfo
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- JP7046603B2 JP7046603B2 JP2017515830A JP2017515830A JP7046603B2 JP 7046603 B2 JP7046603 B2 JP 7046603B2 JP 2017515830 A JP2017515830 A JP 2017515830A JP 2017515830 A JP2017515830 A JP 2017515830A JP 7046603 B2 JP7046603 B2 JP 7046603B2
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/502—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
- B01L3/5027—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip
- B01L3/502715—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip characterised by interfacing components, e.g. fluidic, electrical, optical or mechanical interfaces
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/502—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
- B01L3/5027—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip
- B01L3/502738—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip characterised by integrated valves
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/502—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
- B01L3/5027—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip
- B01L3/502753—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip characterised by bulk separation arrangements on lab-on-a-chip devices, e.g. for filtration or centrifugation
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
- C12N15/1006—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers
- C12N15/101—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers by chromatography, e.g. electrophoresis, ion-exchange, reverse phase
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- C—CHEMISTRY; METALLURGY
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/02—Adapting objects or devices to another
- B01L2200/028—Modular arrangements
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/06—Fluid handling related problems
- B01L2200/0631—Purification arrangements, e.g. solid phase extraction [SPE]
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/16—Reagents, handling or storing thereof
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/08—Geometry, shape and general structure
- B01L2300/0861—Configuration of multiple channels and/or chambers in a single devices
- B01L2300/087—Multiple sequential chambers
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
- B01L2300/08—Geometry, shape and general structure
- B01L2300/0861—Configuration of multiple channels and/or chambers in a single devices
- B01L2300/0877—Flow chambers
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2400/00—Moving or stopping fluids
- B01L2400/04—Moving fluids with specific forces or mechanical means
- B01L2400/0475—Moving fluids with specific forces or mechanical means specific mechanical means and fluid pressure
- B01L2400/0487—Moving fluids with specific forces or mechanical means specific mechanical means and fluid pressure fluid pressure, pneumatics
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2400/00—Moving or stopping fluids
- B01L2400/06—Valves, specific forms thereof
- B01L2400/0633—Valves, specific forms thereof with moving parts
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays
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- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- General Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Biomedical Technology (AREA)
- Microbiology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Clinical Laboratory Science (AREA)
- Hematology (AREA)
- Dispersion Chemistry (AREA)
- Plant Pathology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Priority Applications (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2021203271A JP7594523B2 (ja) | 2014-09-17 | 2021-12-15 | 微生物を検出し同定するための方法およびデバイス |
| JP2024107218A JP2024156666A (ja) | 2014-09-17 | 2024-07-03 | 微生物を検出し同定するための方法およびデバイス |
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201462051447P | 2014-09-17 | 2014-09-17 | |
| US62/051,447 | 2014-09-17 | ||
| PCT/US2015/050741 WO2016044621A1 (en) | 2014-09-17 | 2015-09-17 | Methods and devices for detecting and identifying microorganisms |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021203271A Division JP7594523B2 (ja) | 2014-09-17 | 2021-12-15 | 微生物を検出し同定するための方法およびデバイス |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2017527301A JP2017527301A (ja) | 2017-09-21 |
| JP2017527301A5 JP2017527301A5 (https=) | 2018-10-25 |
| JP7046603B2 true JP7046603B2 (ja) | 2022-04-04 |
Family
ID=55533861
Family Applications (3)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2017515830A Active JP7046603B2 (ja) | 2014-09-17 | 2015-09-17 | 微生物を検出し同定するための方法およびデバイス |
| JP2021203271A Active JP7594523B2 (ja) | 2014-09-17 | 2021-12-15 | 微生物を検出し同定するための方法およびデバイス |
| JP2024107218A Pending JP2024156666A (ja) | 2014-09-17 | 2024-07-03 | 微生物を検出し同定するための方法およびデバイス |
Family Applications After (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021203271A Active JP7594523B2 (ja) | 2014-09-17 | 2021-12-15 | 微生物を検出し同定するための方法およびデバイス |
| JP2024107218A Pending JP2024156666A (ja) | 2014-09-17 | 2024-07-03 | 微生物を検出し同定するための方法およびデバイス |
Country Status (5)
| Country | Link |
|---|---|
| US (2) | US11414712B2 (https=) |
| EP (2) | EP3194626B1 (https=) |
| JP (3) | JP7046603B2 (https=) |
| CA (1) | CA2961510A1 (https=) |
| WO (1) | WO2016044621A1 (https=) |
Families Citing this family (10)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2961510A1 (en) * | 2014-09-17 | 2016-03-24 | Helixbind, Inc. | Methods and devices for detecting and identifying microorganisms |
| WO2017160820A1 (en) | 2016-03-14 | 2017-09-21 | Helixbind, Inc. | Integrated fluidic devices and related methods |
| CN110832085A (zh) * | 2017-04-03 | 2020-02-21 | 海利克斯拜恩德股份有限公司 | 用于鉴定微生物感染的方法和装置 |
| WO2019116034A1 (en) * | 2017-12-12 | 2019-06-20 | Cell Therapy Catapult Limited | Microbial enrichment method |
| EP3803326A4 (en) * | 2018-05-25 | 2022-02-23 | Qvella Corporation | METHODS AND COMPOSITIONS FOR SELECTIVE LYSIS OF BLOOD CELLS AND SEPARATION OF MICROBIAL CELLS |
| CA3137012A1 (en) | 2019-04-16 | 2020-10-22 | Helixbind, Inc. | Methods and devices for ultrasensitive direct detection of microorganisms |
| WO2021055495A1 (en) * | 2019-09-17 | 2021-03-25 | Juno Bio Limited | Methods and systems for selective nucleic acid depletion |
| CN115175765B (zh) | 2020-02-25 | 2024-05-07 | 海利克斯拜恩德股份有限公司 | 用于流体系统的试剂载体 |
| CN115703993B (zh) * | 2021-08-17 | 2025-08-01 | 北京京东方技术开发有限公司 | 微流控芯片、其核酸提取方法及核酸提取装置 |
| WO2023141916A1 (zh) | 2022-01-28 | 2023-08-03 | 京东方科技集团股份有限公司 | 芯片散热装置和核酸提取设备 |
Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20060003332A1 (en) | 1998-06-18 | 2006-01-05 | Hyldig-Nielsen Jens J | Method for multiplex PNA-FISH |
| JP2008531028A (ja) | 2005-03-02 | 2008-08-14 | モルジム ゲーエムベーハー ウント コンパニー カーゲー | カオトロピック剤および/または界面活性剤の存在下で核酸を分解するためのヌクレアーゼの使用 |
| JP2008539712A (ja) | 2005-05-03 | 2008-11-20 | アコライト バイオメディカ リミティド | 細胞内酵素放出前の細胞外酵素不活性化を用いたサンプル中の細胞識別 |
| WO2011028494A2 (en) | 2009-08-24 | 2011-03-10 | Trustees Of Boston University | Label-free sensing of pna-dna complexes using nanopores |
| JP2012526996A (ja) | 2009-05-15 | 2012-11-01 | ビオメリュー・インコーポレイテッド | 試料内の微生物因子の迅速な同定および/または特徴付けのためのシステムおよび方法 |
| JP2013512685A (ja) | 2009-12-08 | 2013-04-18 | バイオカルティス、ソシエテ、アノニム | 細胞の選択的溶解 |
| WO2013176992A2 (en) | 2012-05-20 | 2013-11-28 | Alon Singer | Methods and compositions for the diagnosis of sepsis using gamma peptide nucleic acids |
Family Cites Families (11)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6534262B1 (en) * | 1998-05-14 | 2003-03-18 | Whitehead Institute For Biomedical Research | Solid phase technique for selectively isolating nucleic acids |
| US20070054278A1 (en) | 2003-11-18 | 2007-03-08 | Applera Corporation | Polymorphisms in nucleic acid molecules encoding human enzyme proteins, methods of detection and uses thereof |
| US9434997B2 (en) | 2007-08-24 | 2016-09-06 | Lawrence Livermore National Security, Llc | Methods, compounds and systems for detecting a microorganism in a sample |
| KR20090058221A (ko) * | 2007-12-04 | 2009-06-09 | 삼성전자주식회사 | 시료 중의 세포 집단으로부터 죽은 세포를 선택적으로파쇄하는 방법 |
| CA2773186A1 (en) * | 2009-09-24 | 2011-03-31 | Qiagen Gaithersburg, Inc. | Compositions, methods, and kits for isolating and analyzing nucleic acids using an anion exchange material |
| EP2325312A1 (de) | 2009-11-19 | 2011-05-25 | Qiagen GmbH | Verfahren zur selektiven Anreicherung und Isolierung mikrobieller und optional zusätzlich viraler Nukleinsäuren |
| WO2011087789A2 (en) * | 2009-12-22 | 2011-07-21 | Becton, Dickinson And Company | Methods for the detection of microorganisms |
| US9228240B2 (en) * | 2010-06-03 | 2016-01-05 | California Institute Of Technology | Methods for detecting and quantifying viable bacterial endo-spores |
| EP2684947A1 (en) * | 2012-07-09 | 2014-01-15 | Biocartis SA | A method for filtering a biological sample |
| WO2014025771A2 (en) * | 2012-08-06 | 2014-02-13 | Biogen Idec Ma Inc. | Methods and compositions for inactivating enveloped viruses |
| CA2961510A1 (en) * | 2014-09-17 | 2016-03-24 | Helixbind, Inc. | Methods and devices for detecting and identifying microorganisms |
-
2015
- 2015-09-17 CA CA2961510A patent/CA2961510A1/en active Pending
- 2015-09-17 EP EP15842027.3A patent/EP3194626B1/en active Active
- 2015-09-17 JP JP2017515830A patent/JP7046603B2/ja active Active
- 2015-09-17 WO PCT/US2015/050741 patent/WO2016044621A1/en not_active Ceased
- 2015-09-17 EP EP20154925.0A patent/EP3696267A1/en active Pending
- 2015-09-17 US US15/511,957 patent/US11414712B2/en active Active
-
2021
- 2021-12-15 JP JP2021203271A patent/JP7594523B2/ja active Active
-
2022
- 2022-07-21 US US17/870,506 patent/US20230183820A1/en active Pending
-
2024
- 2024-07-03 JP JP2024107218A patent/JP2024156666A/ja active Pending
Patent Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20060003332A1 (en) | 1998-06-18 | 2006-01-05 | Hyldig-Nielsen Jens J | Method for multiplex PNA-FISH |
| JP2008531028A (ja) | 2005-03-02 | 2008-08-14 | モルジム ゲーエムベーハー ウント コンパニー カーゲー | カオトロピック剤および/または界面活性剤の存在下で核酸を分解するためのヌクレアーゼの使用 |
| JP2008539712A (ja) | 2005-05-03 | 2008-11-20 | アコライト バイオメディカ リミティド | 細胞内酵素放出前の細胞外酵素不活性化を用いたサンプル中の細胞識別 |
| JP2012526996A (ja) | 2009-05-15 | 2012-11-01 | ビオメリュー・インコーポレイテッド | 試料内の微生物因子の迅速な同定および/または特徴付けのためのシステムおよび方法 |
| WO2011028494A2 (en) | 2009-08-24 | 2011-03-10 | Trustees Of Boston University | Label-free sensing of pna-dna complexes using nanopores |
| JP2013512685A (ja) | 2009-12-08 | 2013-04-18 | バイオカルティス、ソシエテ、アノニム | 細胞の選択的溶解 |
| WO2013176992A2 (en) | 2012-05-20 | 2013-11-28 | Alon Singer | Methods and compositions for the diagnosis of sepsis using gamma peptide nucleic acids |
Non-Patent Citations (2)
| Title |
|---|
| Lab Chip, 2012, Vol.12, No.18, p.3341-3347 |
| Proc of SPIE, Vol. 4982, 2003, p.170-177 |
Also Published As
| Publication number | Publication date |
|---|---|
| WO2016044621A1 (en) | 2016-03-24 |
| JP2017527301A (ja) | 2017-09-21 |
| CA2961510A1 (en) | 2016-03-24 |
| EP3194626B1 (en) | 2020-02-12 |
| US11414712B2 (en) | 2022-08-16 |
| US20230183820A1 (en) | 2023-06-15 |
| JP7594523B2 (ja) | 2024-12-04 |
| EP3194626A1 (en) | 2017-07-26 |
| JP2024156666A (ja) | 2024-11-06 |
| JP2022050415A (ja) | 2022-03-30 |
| US20170292146A1 (en) | 2017-10-12 |
| EP3696267A1 (en) | 2020-08-19 |
| EP3194626A4 (en) | 2018-06-20 |
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