JP5907880B2 - クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法 - Google Patents

クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法 Download PDF

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JP5907880B2
JP5907880B2 JP2012539000A JP2012539000A JP5907880B2 JP 5907880 B2 JP5907880 B2 JP 5907880B2 JP 2012539000 A JP2012539000 A JP 2012539000A JP 2012539000 A JP2012539000 A JP 2012539000A JP 5907880 B2 JP5907880 B2 JP 5907880B2
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meca
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JP2013510579A (ja
JP2013510579A5 (enExample
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ジュリュ ル，
ジュリュ ル，
ジフア ワン，
ジフア ワン，
アントニオ アレバロ レイス，
アントニオ アレバロ レイス，
エリック アラン グスタフソン，
エリック アラン グスタフソン，
ジョン スティーブン ライリー，
ジョン スティーブン ライリー，
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Beckman Coulter Inc
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
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    • C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/112—Disease subtyping, staging or classification
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/30—Unsupervised data analysis

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  • Life Sciences & Earth Sciences (AREA)
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  • Chemical & Material Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
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  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
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  • Evolutionary Computation (AREA)
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  • Software Systems (AREA)
  • Toxicology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
JP2012539000A 2009-11-13 2010-11-12 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法 Expired - Fee Related JP5907880B2 (ja)

Applications Claiming Priority (3)

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US26114709P 2009-11-13 2009-11-13
US61/261,147 2009-11-13
PCT/US2010/056455 WO2011060222A2 (en) 2009-11-13 2010-11-12 Systems and methods for detecting the presence of a biological status using clustering

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JP2015080636A Division JP2015165413A (ja) 2009-11-13 2015-04-10 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法

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JP2013510579A JP2013510579A (ja) 2013-03-28
JP2013510579A5 JP2013510579A5 (enExample) 2013-12-12
JP5907880B2 true JP5907880B2 (ja) 2016-04-26

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JP2015080636A Pending JP2015165413A (ja) 2009-11-13 2015-04-10 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法

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US (3) US8442924B2 (enExample)
EP (1) EP2499591A2 (enExample)
JP (2) JP5907880B2 (enExample)
KR (1) KR20120101065A (enExample)
CN (1) CN102713919B (enExample)
BR (1) BR112012011262A2 (enExample)
RU (1) RU2012124051A (enExample)
WO (1) WO2011060222A2 (enExample)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20110269138A1 (en) * 2008-12-30 2011-11-03 Qiagen Hamburg Gmbh Method for detecting methicillin-resistant staphylococcus aureus (mrsa) strains
WO2011060222A2 (en) 2009-11-13 2011-05-19 Beckman Coulter, Inc. Systems and methods for detecting the presence of a biological status using clustering
EP2617836A1 (en) * 2012-01-23 2013-07-24 Steffen Mergemeier Method for detecting a methicillin resistant coagulase positive Staphylococcus aureus strain
EP2887245A1 (en) * 2013-12-20 2015-06-24 Dassault Systèmes A computer-implemented method for designing a biological model
CN117425932A (zh) * 2021-06-09 2024-01-19 国立大学法人京都大学 信息处理装置、信息处理方法以及程序

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US5210015A (en) 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
US6335184B1 (en) * 1993-07-23 2002-01-01 Bio-Rad Laboratories, Inc. Linked linear amplification of nucleic acids
US5702895A (en) 1995-01-19 1997-12-30 Wakunaga Seiyaku Kabushiki Kaisha Method and kit for detecting methicillin-resistant Staphylococcus aureus
JP3957338B2 (ja) * 1996-02-23 2007-08-15 株式会社カイノス 診断薬
US6358519B1 (en) * 1998-02-16 2002-03-19 Ruth S. Waterman Germ-resistant communication and data transfer/entry products
US6356845B1 (en) * 1999-08-04 2002-03-12 Pharmacia & Upjohn Company Crystallization and structure determination of Staphylococcus aureus UDP-N-acetylenolpyruvylglucosamine reductase (S. aureus MurB)
DE60217837T2 (de) * 2001-03-15 2007-10-25 Jacques Schrenzel Nachweis von methicillin-resistenten staphylococcus aureus bakterien (mrsa)
US20030014420A1 (en) * 2001-04-20 2003-01-16 Jessee Charles B. Method and system for data analysis
FR2844807B1 (fr) * 2002-09-23 2005-11-11 Rambach Alain Procede de detection de microorganismes resistants a la meticilline
EP1603674B1 (en) * 2003-02-05 2016-01-06 Iquum, Inc. Sample processing
ATE322559T1 (de) 2003-11-07 2006-04-15 Fed Rep Of Germany Repr By The Verfahren zur identifizierung von methicilin resistente stapylococcus aureus (mrsa)
EP1541696A1 (en) 2003-12-09 2005-06-15 Institut Pasteur A DNA macro-array for staphylococcus aureus identification and typing
JP2008510456A (ja) * 2004-07-30 2008-04-10 アジェンコート バイオサイエンス コーポレーション 多官能基コート化固相担体を用いる核酸の単離方法
US7368422B2 (en) * 2005-02-28 2008-05-06 Novartis Vaccines And Diagnostics Inc. Semi-synthetic rearranged vancomycin/desmethyl-vancomycin-based glycopeptides with antibiotic activity
GB0504537D0 (en) * 2005-03-04 2005-04-13 Blaze Venture Technologies Ltd Method and device for bacterial sampling
US20070196820A1 (en) * 2005-04-05 2007-08-23 Ravi Kapur Devices and methods for enrichment and alteration of cells and other particles
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JP5346801B2 (ja) 2006-05-12 2013-11-20 セフィード Ｄｎａ組換え接合部の検出
AU2007310738B2 (en) * 2006-10-18 2013-07-18 Institut National De La Sante Et De La Recherche Medicale (Inserm) Method for in vitro diagnosis of PVL-producing Staphylococcus aureus
JP2010524454A (ja) * 2007-04-19 2010-07-22 モレキュラー ディテクション インコーポレーテッド 抗生物質耐性細菌の検出および分析のための方法、組成物、およびキット
WO2009018000A1 (en) * 2007-07-31 2009-02-05 Quest Diagnostics Investments Incorporated Detection of methicillin-resistant and methicillin-sensitive staphylococcus aureus in biological samples
US8229678B2 (en) * 2008-07-25 2012-07-24 Beckman Coulter, Inc. Methods and systems for transforming particle data
US8000940B2 (en) * 2008-10-08 2011-08-16 Beckman Coulter, Inc. Shape parameter for hematology instruments
US8154273B2 (en) * 2008-10-10 2012-04-10 Beckman Coulter, Inc. Detecting and handling coincidence in particle analysis
US8581927B2 (en) * 2008-11-04 2013-11-12 Beckman Coulter, Inc. Multidimensional particle analysis data cluster reconstruction
US8192995B2 (en) * 2008-11-13 2012-06-05 Beckman Coulter, Inc. Method of correction of particle interference to hemoglobin measurement
WO2011060222A2 (en) 2009-11-13 2011-05-19 Beckman Coulter, Inc. Systems and methods for detecting the presence of a biological status using clustering

Also Published As

Publication number Publication date
US20130196334A1 (en) 2013-08-01
JP2015165413A (ja) 2015-09-17
EP2499591A2 (en) 2012-09-19
BR112012011262A2 (pt) 2019-09-24
WO2011060222A2 (en) 2011-05-19
US8442924B2 (en) 2013-05-14
CN102713919A (zh) 2012-10-03
JP2013510579A (ja) 2013-03-28
CN102713919B (zh) 2016-07-06
WO2011060222A9 (en) 2011-07-14
US20110131159A1 (en) 2011-06-02
US20170140096A1 (en) 2017-05-18
RU2012124051A (ru) 2013-12-20
US9519751B2 (en) 2016-12-13
KR20120101065A (ko) 2012-09-12

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