JP2013510579A5 - - Google Patents

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Publication number
JP2013510579A5
JP2013510579A5 JP2012539000A JP2012539000A JP2013510579A5 JP 2013510579 A5 JP2013510579 A5 JP 2013510579A5 JP 2012539000 A JP2012539000 A JP 2012539000A JP 2012539000 A JP2012539000 A JP 2012539000A JP 2013510579 A5 JP2013510579 A5 JP 2013510579A5
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JP
Japan
Prior art keywords
genetic element
sample
digital computer
input value
staphylococcus aureus
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JP2012539000A
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English (en)
Japanese (ja)
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JP5907880B2 (ja
JP2013510579A (ja
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Priority claimed from PCT/US2010/056455 external-priority patent/WO2011060222A2/en
Publication of JP2013510579A publication Critical patent/JP2013510579A/ja
Publication of JP2013510579A5 publication Critical patent/JP2013510579A5/ja
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Publication of JP5907880B2 publication Critical patent/JP5907880B2/ja
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JP2012539000A 2009-11-13 2010-11-12 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法 Expired - Fee Related JP5907880B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US26114709P 2009-11-13 2009-11-13
US61/261,147 2009-11-13
PCT/US2010/056455 WO2011060222A2 (en) 2009-11-13 2010-11-12 Systems and methods for detecting the presence of a biological status using clustering

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2015080636A Division JP2015165413A (ja) 2009-11-13 2015-04-10 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法

Publications (3)

Publication Number Publication Date
JP2013510579A JP2013510579A (ja) 2013-03-28
JP2013510579A5 true JP2013510579A5 (enExample) 2013-12-12
JP5907880B2 JP5907880B2 (ja) 2016-04-26

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ID=43806873

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JP2012539000A Expired - Fee Related JP5907880B2 (ja) 2009-11-13 2010-11-12 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法
JP2015080636A Pending JP2015165413A (ja) 2009-11-13 2015-04-10 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法

Family Applications After (1)

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JP2015080636A Pending JP2015165413A (ja) 2009-11-13 2015-04-10 クラスタリングを用いて生物学的持続状態の存在を検出するためのシステムおよび方法

Country Status (8)

Country Link
US (3) US8442924B2 (enExample)
EP (1) EP2499591A2 (enExample)
JP (2) JP5907880B2 (enExample)
KR (1) KR20120101065A (enExample)
CN (1) CN102713919B (enExample)
BR (1) BR112012011262A2 (enExample)
RU (1) RU2012124051A (enExample)
WO (1) WO2011060222A2 (enExample)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010076013A1 (de) * 2008-12-30 2010-07-08 Qiagen Gmbh Verfahren zum nachweis methicillin-resistenter staphylococcus aureus (mrsa)-stämme
WO2011060222A2 (en) 2009-11-13 2011-05-19 Beckman Coulter, Inc. Systems and methods for detecting the presence of a biological status using clustering
EP2617836A1 (en) * 2012-01-23 2013-07-24 Steffen Mergemeier Method for detecting a methicillin resistant coagulase positive Staphylococcus aureus strain
EP2887245A1 (en) * 2013-12-20 2015-06-24 Dassault Systèmes A computer-implemented method for designing a biological model
CN117425932A (zh) * 2021-06-09 2024-01-19 国立大学法人京都大学 信息处理装置、信息处理方法以及程序

Family Cites Families (27)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5210015A (en) 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
US6335184B1 (en) * 1993-07-23 2002-01-01 Bio-Rad Laboratories, Inc. Linked linear amplification of nucleic acids
US5702895A (en) 1995-01-19 1997-12-30 Wakunaga Seiyaku Kabushiki Kaisha Method and kit for detecting methicillin-resistant Staphylococcus aureus
JP3957338B2 (ja) * 1996-02-23 2007-08-15 株式会社カイノス 診断薬
US6358519B1 (en) * 1998-02-16 2002-03-19 Ruth S. Waterman Germ-resistant communication and data transfer/entry products
CA2378032A1 (en) * 1999-08-04 2001-02-15 Pharmacia & Upjohn Company Crystallization and structure determination of staphylococcus aureus udp-n-acetylenolpyruvylglucosamine reductase (s. aureus murb)
DE60217837T2 (de) 2001-03-15 2007-10-25 Jacques Schrenzel Nachweis von methicillin-resistenten staphylococcus aureus bakterien (mrsa)
US20030030637A1 (en) * 2001-04-20 2003-02-13 Grinstein Georges G. Method and system for data analysis
FR2844807B1 (fr) * 2002-09-23 2005-11-11 Rambach Alain Procede de detection de microorganismes resistants a la meticilline
EP1603674B1 (en) * 2003-02-05 2016-01-06 Iquum, Inc. Sample processing
DE60304481T8 (de) 2003-11-07 2007-03-08 Federal Rep. of Germany repr.by the Ministry of Health & Soc.Security, the latter repr. by the Pres. of the Robert Koch Inst. Verfahren zur Identifizierung von Methicilin resistente Staphylococcus aureus (MRSA)
EP1541696A1 (en) 2003-12-09 2005-06-15 Institut Pasteur A DNA macro-array for staphylococcus aureus identification and typing
WO2006015326A2 (en) 2004-07-30 2006-02-09 Agencourt Bioscience Corporation Methods of isolating nucleic acids using multifunctional group-coated solid phase carriers
US7368422B2 (en) * 2005-02-28 2008-05-06 Novartis Vaccines And Diagnostics Inc. Semi-synthetic rearranged vancomycin/desmethyl-vancomycin-based glycopeptides with antibiotic activity
GB0504537D0 (en) * 2005-03-04 2005-04-13 Blaze Venture Technologies Ltd Method and device for bacterial sampling
US20070196820A1 (en) * 2005-04-05 2007-08-23 Ravi Kapur Devices and methods for enrichment and alteration of cells and other particles
US7838221B2 (en) * 2005-10-11 2010-11-23 Geneohm Sciences, Inc. Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA)
ES2345954T3 (es) * 2006-05-12 2010-10-06 Cepheid Deteccion de la union de recombinacion de adn.
EP2388593A3 (fr) * 2006-10-18 2012-01-18 bioMérieux Procédé de diagnostic in vitro des Staphylococcus aureus producteurs de PVL
JP2010524454A (ja) * 2007-04-19 2010-07-22 モレキュラー ディテクション インコーポレーテッド 抗生物質耐性細菌の検出および分析のための方法、組成物、およびキット
WO2009018000A1 (en) * 2007-07-31 2009-02-05 Quest Diagnostics Investments Incorporated Detection of methicillin-resistant and methicillin-sensitive staphylococcus aureus in biological samples
US8229678B2 (en) * 2008-07-25 2012-07-24 Beckman Coulter, Inc. Methods and systems for transforming particle data
US8000940B2 (en) * 2008-10-08 2011-08-16 Beckman Coulter, Inc. Shape parameter for hematology instruments
US8154273B2 (en) * 2008-10-10 2012-04-10 Beckman Coulter, Inc. Detecting and handling coincidence in particle analysis
US8581927B2 (en) * 2008-11-04 2013-11-12 Beckman Coulter, Inc. Multidimensional particle analysis data cluster reconstruction
US8192995B2 (en) * 2008-11-13 2012-06-05 Beckman Coulter, Inc. Method of correction of particle interference to hemoglobin measurement
WO2011060222A2 (en) 2009-11-13 2011-05-19 Beckman Coulter, Inc. Systems and methods for detecting the presence of a biological status using clustering

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