RU2012124051A - Системы и способы для обнаружения наличия биологического признака с применением кластеризации - Google Patents
Системы и способы для обнаружения наличия биологического признака с применением кластеризации Download PDFInfo
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- RU2012124051A RU2012124051A RU2012124051/10A RU2012124051A RU2012124051A RU 2012124051 A RU2012124051 A RU 2012124051A RU 2012124051/10 A RU2012124051/10 A RU 2012124051/10A RU 2012124051 A RU2012124051 A RU 2012124051A RU 2012124051 A RU2012124051 A RU 2012124051A
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- 238000000034 method Methods 0.000 title claims abstract 30
- 230000002068 genetic effect Effects 0.000 claims abstract 33
- 206010041925 Staphylococcal infections Diseases 0.000 claims abstract 5
- 208000015688 methicillin-resistant staphylococcus aureus infectious disease Diseases 0.000 claims abstract 5
- 101000773513 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) Uncharacterized protein MK0525 Proteins 0.000 claims abstract 2
- 241000191967 Staphylococcus aureus Species 0.000 claims 6
- 241000894006 Bacteria Species 0.000 claims 2
- 230000003321 amplification Effects 0.000 claims 2
- 238000001514 detection method Methods 0.000 claims 2
- 238000003199 nucleic acid amplification method Methods 0.000 claims 2
- 108020004707 nucleic acids Proteins 0.000 claims 2
- 150000007523 nucleic acids Chemical class 0.000 claims 2
- 102000039446 nucleic acids Human genes 0.000 claims 2
- 108090000623 proteins and genes Proteins 0.000 claims 2
- RJQXTJLFIWVMTO-TYNCELHUSA-N Methicillin Chemical compound COC1=CC=CC(OC)=C1C(=O)N[C@@H]1C(=O)N2[C@@H](C(O)=O)C(C)(C)S[C@@H]21 RJQXTJLFIWVMTO-TYNCELHUSA-N 0.000 claims 1
- 238000006073 displacement reaction Methods 0.000 claims 1
- 238000005259 measurement Methods 0.000 claims 1
- 229960003085 meticillin Drugs 0.000 claims 1
- 239000000090 biomarker Substances 0.000 abstract 1
- 239000000523 sample Substances 0.000 abstract 1
Classifications
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/112—Disease subtyping, staging or classification
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/30—Unsupervised data analysis
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- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Chemical & Material Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biophysics (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Organic Chemistry (AREA)
- Molecular Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Theoretical Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Databases & Information Systems (AREA)
- Physiology (AREA)
- Artificial Intelligence (AREA)
- Bioethics (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Data Mining & Analysis (AREA)
- Epidemiology (AREA)
- Evolutionary Computation (AREA)
- Public Health (AREA)
- Software Systems (AREA)
- Toxicology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US26114709P | 2009-11-13 | 2009-11-13 | |
| US61/261,147 | 2009-11-13 | ||
| PCT/US2010/056455 WO2011060222A2 (en) | 2009-11-13 | 2010-11-12 | Systems and methods for detecting the presence of a biological status using clustering |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| RU2012124051A true RU2012124051A (ru) | 2013-12-20 |
Family
ID=43806873
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| RU2012124051/10A RU2012124051A (ru) | 2009-11-13 | 2010-11-12 | Системы и способы для обнаружения наличия биологического признака с применением кластеризации |
Country Status (8)
| Country | Link |
|---|---|
| US (3) | US8442924B2 (enExample) |
| EP (1) | EP2499591A2 (enExample) |
| JP (2) | JP5907880B2 (enExample) |
| KR (1) | KR20120101065A (enExample) |
| CN (1) | CN102713919B (enExample) |
| BR (1) | BR112012011262A2 (enExample) |
| RU (1) | RU2012124051A (enExample) |
| WO (1) | WO2011060222A2 (enExample) |
Families Citing this family (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2010076013A1 (de) * | 2008-12-30 | 2010-07-08 | Qiagen Gmbh | Verfahren zum nachweis methicillin-resistenter staphylococcus aureus (mrsa)-stämme |
| WO2011060222A2 (en) | 2009-11-13 | 2011-05-19 | Beckman Coulter, Inc. | Systems and methods for detecting the presence of a biological status using clustering |
| EP2617836A1 (en) * | 2012-01-23 | 2013-07-24 | Steffen Mergemeier | Method for detecting a methicillin resistant coagulase positive Staphylococcus aureus strain |
| EP2887245A1 (en) * | 2013-12-20 | 2015-06-24 | Dassault Systèmes | A computer-implemented method for designing a biological model |
| CN117425932A (zh) * | 2021-06-09 | 2024-01-19 | 国立大学法人京都大学 | 信息处理装置、信息处理方法以及程序 |
Family Cites Families (27)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5210015A (en) | 1990-08-06 | 1993-05-11 | Hoffman-La Roche Inc. | Homogeneous assay system using the nuclease activity of a nucleic acid polymerase |
| US6335184B1 (en) * | 1993-07-23 | 2002-01-01 | Bio-Rad Laboratories, Inc. | Linked linear amplification of nucleic acids |
| US5702895A (en) | 1995-01-19 | 1997-12-30 | Wakunaga Seiyaku Kabushiki Kaisha | Method and kit for detecting methicillin-resistant Staphylococcus aureus |
| JP3957338B2 (ja) * | 1996-02-23 | 2007-08-15 | 株式会社カイノス | 診断薬 |
| US6358519B1 (en) * | 1998-02-16 | 2002-03-19 | Ruth S. Waterman | Germ-resistant communication and data transfer/entry products |
| CA2378032A1 (en) * | 1999-08-04 | 2001-02-15 | Pharmacia & Upjohn Company | Crystallization and structure determination of staphylococcus aureus udp-n-acetylenolpyruvylglucosamine reductase (s. aureus murb) |
| DE60217837T2 (de) | 2001-03-15 | 2007-10-25 | Jacques Schrenzel | Nachweis von methicillin-resistenten staphylococcus aureus bakterien (mrsa) |
| US20030030637A1 (en) * | 2001-04-20 | 2003-02-13 | Grinstein Georges G. | Method and system for data analysis |
| FR2844807B1 (fr) * | 2002-09-23 | 2005-11-11 | Rambach Alain | Procede de detection de microorganismes resistants a la meticilline |
| EP1603674B1 (en) * | 2003-02-05 | 2016-01-06 | Iquum, Inc. | Sample processing |
| DE60304481T8 (de) | 2003-11-07 | 2007-03-08 | Federal Rep. of Germany repr.by the Ministry of Health & Soc.Security, the latter repr. by the Pres. of the Robert Koch Inst. | Verfahren zur Identifizierung von Methicilin resistente Staphylococcus aureus (MRSA) |
| EP1541696A1 (en) | 2003-12-09 | 2005-06-15 | Institut Pasteur | A DNA macro-array for staphylococcus aureus identification and typing |
| WO2006015326A2 (en) | 2004-07-30 | 2006-02-09 | Agencourt Bioscience Corporation | Methods of isolating nucleic acids using multifunctional group-coated solid phase carriers |
| US7368422B2 (en) * | 2005-02-28 | 2008-05-06 | Novartis Vaccines And Diagnostics Inc. | Semi-synthetic rearranged vancomycin/desmethyl-vancomycin-based glycopeptides with antibiotic activity |
| GB0504537D0 (en) * | 2005-03-04 | 2005-04-13 | Blaze Venture Technologies Ltd | Method and device for bacterial sampling |
| US20070196820A1 (en) * | 2005-04-05 | 2007-08-23 | Ravi Kapur | Devices and methods for enrichment and alteration of cells and other particles |
| US7838221B2 (en) * | 2005-10-11 | 2010-11-23 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) |
| ES2345954T3 (es) * | 2006-05-12 | 2010-10-06 | Cepheid | Deteccion de la union de recombinacion de adn. |
| EP2388593A3 (fr) * | 2006-10-18 | 2012-01-18 | bioMérieux | Procédé de diagnostic in vitro des Staphylococcus aureus producteurs de PVL |
| JP2010524454A (ja) * | 2007-04-19 | 2010-07-22 | モレキュラー ディテクション インコーポレーテッド | 抗生物質耐性細菌の検出および分析のための方法、組成物、およびキット |
| WO2009018000A1 (en) * | 2007-07-31 | 2009-02-05 | Quest Diagnostics Investments Incorporated | Detection of methicillin-resistant and methicillin-sensitive staphylococcus aureus in biological samples |
| US8229678B2 (en) * | 2008-07-25 | 2012-07-24 | Beckman Coulter, Inc. | Methods and systems for transforming particle data |
| US8000940B2 (en) * | 2008-10-08 | 2011-08-16 | Beckman Coulter, Inc. | Shape parameter for hematology instruments |
| US8154273B2 (en) * | 2008-10-10 | 2012-04-10 | Beckman Coulter, Inc. | Detecting and handling coincidence in particle analysis |
| US8581927B2 (en) * | 2008-11-04 | 2013-11-12 | Beckman Coulter, Inc. | Multidimensional particle analysis data cluster reconstruction |
| US8192995B2 (en) * | 2008-11-13 | 2012-06-05 | Beckman Coulter, Inc. | Method of correction of particle interference to hemoglobin measurement |
| WO2011060222A2 (en) | 2009-11-13 | 2011-05-19 | Beckman Coulter, Inc. | Systems and methods for detecting the presence of a biological status using clustering |
-
2010
- 2010-11-12 WO PCT/US2010/056455 patent/WO2011060222A2/en not_active Ceased
- 2010-11-12 EP EP10782487A patent/EP2499591A2/en not_active Withdrawn
- 2010-11-12 CN CN201080051528.1A patent/CN102713919B/zh not_active Expired - Fee Related
- 2010-11-12 JP JP2012539000A patent/JP5907880B2/ja not_active Expired - Fee Related
- 2010-11-12 KR KR1020127015126A patent/KR20120101065A/ko not_active Abandoned
- 2010-11-12 RU RU2012124051/10A patent/RU2012124051A/ru not_active Application Discontinuation
- 2010-11-12 US US12/944,992 patent/US8442924B2/en not_active Expired - Fee Related
- 2010-11-12 BR BR112012011262A patent/BR112012011262A2/pt not_active IP Right Cessation
-
2013
- 2013-03-29 US US13/853,897 patent/US9519751B2/en not_active Expired - Fee Related
-
2015
- 2015-04-10 JP JP2015080636A patent/JP2015165413A/ja active Pending
-
2016
- 2016-11-11 US US15/349,868 patent/US20170140096A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| US20170140096A1 (en) | 2017-05-18 |
| US20110131159A1 (en) | 2011-06-02 |
| JP5907880B2 (ja) | 2016-04-26 |
| US20130196334A1 (en) | 2013-08-01 |
| JP2013510579A (ja) | 2013-03-28 |
| WO2011060222A2 (en) | 2011-05-19 |
| KR20120101065A (ko) | 2012-09-12 |
| US9519751B2 (en) | 2016-12-13 |
| US8442924B2 (en) | 2013-05-14 |
| EP2499591A2 (en) | 2012-09-19 |
| CN102713919A (zh) | 2012-10-03 |
| CN102713919B (zh) | 2016-07-06 |
| JP2015165413A (ja) | 2015-09-17 |
| WO2011060222A9 (en) | 2011-07-14 |
| BR112012011262A2 (pt) | 2019-09-24 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| FA94 | Acknowledgement of application withdrawn (non-payment of fees) |
Effective date: 20180823 |