JP5091122B2 - 統計的線形データの同定 - Google Patents

統計的線形データの同定 Download PDF

Info

Publication number
JP5091122B2
JP5091122B2 JP2008511434A JP2008511434A JP5091122B2 JP 5091122 B2 JP5091122 B2 JP 5091122B2 JP 2008511434 A JP2008511434 A JP 2008511434A JP 2008511434 A JP2008511434 A JP 2008511434A JP 5091122 B2 JP5091122 B2 JP 5091122B2
Authority
JP
Japan
Prior art keywords
data
data points
original
smoothed
residual
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Fee Related
Application number
JP2008511434A
Other languages
English (en)
Japanese (ja)
Other versions
JP2008546048A (ja
JP2008546048A5 (enrdf_load_stackoverflow
Inventor
ラーナー,ジェフリー
Original Assignee
バイオ−ラッド ラボラトリーズ,インコーポレイティド
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US11/432,856 external-priority patent/US7647187B2/en
Application filed by バイオ−ラッド ラボラトリーズ,インコーポレイティド filed Critical バイオ−ラッド ラボラトリーズ,インコーポレイティド
Publication of JP2008546048A publication Critical patent/JP2008546048A/ja
Publication of JP2008546048A5 publication Critical patent/JP2008546048A5/ja
Application granted granted Critical
Publication of JP5091122B2 publication Critical patent/JP5091122B2/ja
Expired - Fee Related legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00Pattern recognition
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6851Quantitative amplification
    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F2218/00Aspects of pattern recognition specially adapted for signal processing
    • G06F2218/08Feature extraction
    • G06F2218/10Feature extraction by analysing the shape of a waveform, e.g. extracting parameters relating to peaks

Landscapes

  • Engineering & Computer Science (AREA)
  • Theoretical Computer Science (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Data Mining & Analysis (AREA)
  • Evolutionary Biology (AREA)
  • Evolutionary Computation (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Artificial Intelligence (AREA)
  • Complex Calculations (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Measurement And Recording Of Electrical Phenomena And Electrical Characteristics Of The Living Body (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Measuring Pulse, Heart Rate, Blood Pressure Or Blood Flow (AREA)
  • Radar Systems Or Details Thereof (AREA)
JP2008511434A 2005-05-13 2006-05-12 統計的線形データの同定 Expired - Fee Related JP5091122B2 (ja)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US68118205P 2005-05-13 2005-05-13
US60/681,182 2005-05-13
US11/432,856 US7647187B2 (en) 2005-05-13 2006-05-11 Identifying statistically linear data
US11/432,856 2006-05-11
PCT/US2006/018549 WO2006124673A2 (en) 2005-05-13 2006-05-12 Identifying statistically linear data

Publications (3)

Publication Number Publication Date
JP2008546048A JP2008546048A (ja) 2008-12-18
JP2008546048A5 JP2008546048A5 (enrdf_load_stackoverflow) 2009-07-02
JP5091122B2 true JP5091122B2 (ja) 2012-12-05

Family

ID=37431939

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2008511434A Expired - Fee Related JP5091122B2 (ja) 2005-05-13 2006-05-12 統計的線形データの同定

Country Status (6)

Country Link
EP (1) EP1880334A4 (enrdf_load_stackoverflow)
JP (1) JP5091122B2 (enrdf_load_stackoverflow)
CN (1) CN101292245B (enrdf_load_stackoverflow)
AU (1) AU2006247597B2 (enrdf_load_stackoverflow)
CA (1) CA2603389C (enrdf_load_stackoverflow)
WO (1) WO2006124673A2 (enrdf_load_stackoverflow)

Families Citing this family (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20090119020A1 (en) * 2007-09-25 2009-05-07 Roche Molecular Systems, Inc. Pcr elbow determination using quadratic test for curvature analysis of a double sigmoid
JPWO2009054474A1 (ja) * 2007-10-26 2011-03-10 凸版印刷株式会社 アレル判定装置及び方法、ならびに、コンピュータプログラム
CA2736243A1 (en) * 2008-09-09 2010-03-18 Bio-Rad Laboratories, Inc. Multi-stage, regression-based pcr analysis system
US8219366B2 (en) * 2009-08-26 2012-07-10 Roche Molecular Sytems, Inc. Determination of elbow values for PCR for parabolic shaped curves
JP5379044B2 (ja) * 2010-02-25 2013-12-25 株式会社日立ハイテクノロジーズ 自動分析装置
US10176293B2 (en) 2012-10-02 2019-01-08 Roche Molecular Systems, Inc. Universal method to determine real-time PCR cycle threshold values

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2139070C (en) * 1994-12-23 2010-03-30 Burton W. Blais Method for enhancing detection ability of nucleic acid assays employing polymerase chain reaction
US6175602B1 (en) * 1998-05-27 2001-01-16 Telefonaktiebolaget Lm Ericsson (Publ) Signal noise reduction by spectral subtraction using linear convolution and casual filtering
WO2002034948A2 (en) * 2000-10-25 2002-05-02 City Of Hope Candidate region mismatch scanning for genotyping and mutation detection
US7228237B2 (en) * 2002-02-07 2007-06-05 Applera Corporation Automatic threshold setting and baseline determination for real-time PCR
US20050069904A1 (en) * 2003-09-29 2005-03-31 Stuart Peirson Analysis of real-time PCR data

Also Published As

Publication number Publication date
CA2603389C (en) 2012-07-10
WO2006124673A3 (en) 2008-04-17
JP2008546048A (ja) 2008-12-18
EP1880334A4 (en) 2010-01-20
WO2006124673A2 (en) 2006-11-23
CN101292245B (zh) 2013-04-17
EP1880334A2 (en) 2008-01-23
AU2006247597A1 (en) 2006-11-23
CA2603389A1 (en) 2006-11-23
CN101292245A (zh) 2008-10-22
AU2006247597B2 (en) 2010-02-11

Similar Documents

Publication Publication Date Title
US7720611B2 (en) Baselining amplification data
JP6388627B2 (ja) 情報システムを用いて反応を解析する方法およびシステム
JP5091122B2 (ja) 統計的線形データの同定
JP4610196B2 (ja) リアルタイムpcrのための自動閾値設定およびベースライン決定
US8560247B2 (en) Multi-stage, regression-based PCR analysis system
JP4634365B2 (ja) ダブルシグモイドの曲率分析を使用したpcrのエルボー決定
JP5599986B2 (ja) リアルタイムpcr蛍光データ内のステップ型不連続部除去用のシステム及び方法
JP5558762B2 (ja) 方程式のないアルゴリズムによるリアルタイムpcrエルボーの呼び出し
CN105849736B (zh) 用于检测和校正实时pcr信号中的跳跃的方法和系统
JP6907388B2 (ja) 核酸増幅反応を分析するための分析方法およびシステム
US7647187B2 (en) Identifying statistically linear data
KR101771402B1 (ko) 핵산 정량 방법
US11232851B2 (en) System and method for modeling and subtracting background signals from a melt curve
JP5313663B2 (ja) 増幅データのベースライン化
KR20140002242A (ko) 실시간 pcr을 이용하여 핵산의 정량 분석을 수행하는 방법 및 장치
JP4690513B2 (ja) 核酸アッセイの読取り値を分析するためのコンピュータ化した方法とその装置
WO2006124571A2 (en) Baselining amplification data
CN115103915A (zh) 用于执行qPCR方法的方法和设备
JP5014147B2 (ja) 特にpcrによる、核酸の個体群の初期個体量を見積もりするための方法、設備、およびコンピュータプログラム

Legal Events

Date Code Title Description
A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20090317

A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20090317

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20090514

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20120124

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20120423

A602 Written permission of extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A602

Effective date: 20120501

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20120718

TRDD Decision of grant or rejection written
A01 Written decision to grant a patent or to grant a registration (utility model)

Free format text: JAPANESE INTERMEDIATE CODE: A01

Effective date: 20120814

A01 Written decision to grant a patent or to grant a registration (utility model)

Free format text: JAPANESE INTERMEDIATE CODE: A01

A61 First payment of annual fees (during grant procedure)

Free format text: JAPANESE INTERMEDIATE CODE: A61

Effective date: 20120913

FPAY Renewal fee payment (event date is renewal date of database)

Free format text: PAYMENT UNTIL: 20150921

Year of fee payment: 3

R150 Certificate of patent or registration of utility model

Free format text: JAPANESE INTERMEDIATE CODE: R150

Ref document number: 5091122

Country of ref document: JP

Free format text: JAPANESE INTERMEDIATE CODE: R150

R250 Receipt of annual fees

Free format text: JAPANESE INTERMEDIATE CODE: R250

R250 Receipt of annual fees

Free format text: JAPANESE INTERMEDIATE CODE: R250

R250 Receipt of annual fees

Free format text: JAPANESE INTERMEDIATE CODE: R250

R250 Receipt of annual fees

Free format text: JAPANESE INTERMEDIATE CODE: R250

R250 Receipt of annual fees

Free format text: JAPANESE INTERMEDIATE CODE: R250

R250 Receipt of annual fees

Free format text: JAPANESE INTERMEDIATE CODE: R250

LAPS Cancellation because of no payment of annual fees