JP4651621B2 - 固定化された核酸の検出 - Google Patents

固定化された核酸の検出 Download PDF

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Publication number
JP4651621B2
JP4651621B2 JP2006534241A JP2006534241A JP4651621B2 JP 4651621 B2 JP4651621 B2 JP 4651621B2 JP 2006534241 A JP2006534241 A JP 2006534241A JP 2006534241 A JP2006534241 A JP 2006534241A JP 4651621 B2 JP4651621 B2 JP 4651621B2
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Prior art keywords
nucleic acid
compound
sample
gel
immobilized
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JP2006534241A
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English (en)
Japanese (ja)
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JP2007507238A5 (https=
JP2007507238A (ja
Inventor
マシュー ピー. ビューデット,
グレゴリー ダブリュー. コックス,
ステファン ユエ,
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モレキュラー プローブス, インコーポレイテッド
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64Fluorescence; Phosphorescence
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
    • C07D417/06Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
    • CCHEMISTRY; METALLURGY
    • C09DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
    • C09BORGANIC DYES OR CLOSELY-RELATED COMPOUNDS FOR PRODUCING DYES, e.g. PIGMENTS; MORDANTS; LAKES
    • C09B23/00Methine or polymethine dyes, e.g. cyanine dyes
    • C09B23/02Methine or polymethine dyes, e.g. cyanine dyes the polymethine chain containing an odd number of >CH- or >C[alkyl]- groups
    • CCHEMISTRY; METALLURGY
    • C09DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
    • C09BORGANIC DYES OR CLOSELY-RELATED COMPOUNDS FOR PRODUCING DYES, e.g. PIGMENTS; MORDANTS; LAKES
    • C09B23/00Methine or polymethine dyes, e.g. cyanine dyes
    • C09B23/02Methine or polymethine dyes, e.g. cyanine dyes the polymethine chain containing an odd number of >CH- or >C[alkyl]- groups
    • C09B23/04Methine or polymethine dyes, e.g. cyanine dyes the polymethine chain containing an odd number of >CH- or >C[alkyl]- groups one >CH- group, e.g. cyanines, isocyanines, pseudocyanines
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means
    • C12Q1/6825Nucleic acid detection involving sensors
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00Sampling; Preparing specimens for investigation
    • G01N1/28Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/30Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00Sampling; Preparing specimens for investigation
    • G01N1/28Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/30Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
    • G01N2001/302Stain compositions
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10TTECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00Chemistry: analytical and immunological testing
    • Y10T436/14Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
    • Y10T436/142222Hetero-O [e.g., ascorbic acid, etc.]
    • Y10T436/143333Saccharide [e.g., DNA, etc.]

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Zoology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Physics & Mathematics (AREA)
  • General Health & Medical Sciences (AREA)
  • Immunology (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Biomedical Technology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Plural Heterocyclic Compounds (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
JP2006534241A 2003-09-30 2004-09-30 固定化された核酸の検出 Expired - Lifetime JP4651621B2 (ja)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US50763003P 2003-09-30 2003-09-30
PCT/US2004/032693 WO2005033342A1 (en) 2003-09-30 2004-09-30 Detection of immobilized nucleic acid

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2010255930A Division JP2011099862A (ja) 2003-09-30 2010-11-16 固定化された核酸の検出

Publications (3)

Publication Number Publication Date
JP2007507238A JP2007507238A (ja) 2007-03-29
JP2007507238A5 JP2007507238A5 (https=) 2007-11-22
JP4651621B2 true JP4651621B2 (ja) 2011-03-16

Family

ID=34421643

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2006534241A Expired - Lifetime JP4651621B2 (ja) 2003-09-30 2004-09-30 固定化された核酸の検出
JP2010255930A Pending JP2011099862A (ja) 2003-09-30 2010-11-16 固定化された核酸の検出

Family Applications After (1)

Application Number Title Priority Date Filing Date
JP2010255930A Pending JP2011099862A (ja) 2003-09-30 2010-11-16 固定化された核酸の検出

Country Status (7)

Country Link
US (7) US7727716B2 (https=)
EP (2) EP1988177A1 (https=)
JP (2) JP4651621B2 (https=)
AT (1) ATE428002T1 (https=)
CA (1) CA2540508A1 (https=)
DE (1) DE602004020484D1 (https=)
WO (1) WO2005033342A1 (https=)

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EP1988177A1 (en) 2003-09-30 2008-11-05 Molecular Probes Inc. Detection of immobilised nucleic acid
US7776567B2 (en) * 2005-03-17 2010-08-17 Biotium, Inc. Dimeric and trimeric nucleic acid dyes, and associated systems and methods
US7601498B2 (en) * 2005-03-17 2009-10-13 Biotium, Inc. Methods of using dyes in association with nucleic acid staining or detection and associated technology
US20080057557A1 (en) * 2006-08-31 2008-03-06 Invitrogen Corporation Methods, cassettes, gels and apparatuses for isolation and collection of biomolecules from electrophoresis gels
JP5086362B2 (ja) * 2006-11-02 2012-11-28 エフ.ホフマン−ラ ロシュ アーゲー 新規dsDNA結合蛍光色素
EP2201009B1 (en) 2007-10-02 2016-10-26 Thermo Fisher Scientific Inc. Monomethine dyes
US8877437B1 (en) 2009-12-23 2014-11-04 Biotium, Inc. Methods of using dyes in association with nucleic acid staining or detection
EP2697730A4 (en) 2011-04-15 2015-04-15 Advanced Diamond Technologies Inc ELECTROCHEMICAL SYSTEM AND METHOD FOR PROPORTION OF OXIDIZERS AT HIGH CURRENT DENSITY
JP2013040136A (ja) * 2011-08-17 2013-02-28 Tosoh Corp 4−アルコキシ−2−(4−アミノスチリル)ベンゾチアゾリウム塩、その製造方法およびそれを用いる核酸の検出方法
WO2014089421A1 (en) * 2012-12-07 2014-06-12 Life Technologies Corporation Detection of rna molecules using substituted unsymmetrical cyanine dyes
US10011570B2 (en) 2013-10-03 2018-07-03 Biotium, Inc. Nucleic acid binding dyes with improved safety
CN104004378B (zh) * 2014-06-11 2015-12-09 南方医科大学 一种苯并吲哚半菁染料及其用途
US9969887B2 (en) * 2016-04-20 2018-05-15 Sfc Co., Ltd. Merocyanine-based compounds, and dyes, kits and contrast medium compositions for labelling biomolecules comprising the same
WO2019063795A1 (en) * 2017-09-30 2019-04-04 Bioatlas Oü MULTI-COMPONENT TABLET FOR THE PRODUCTION OF AGAROSE GEL AND RELATED METHODS
CN114174799A (zh) * 2019-05-30 2022-03-11 贝克曼库尔特有限公司 用于固定生物标本以进行显微成像的方法和系统
US12169166B2 (en) 2021-02-16 2024-12-17 Aat Bioquest, Inc. Fluorogenic cyanine compounds for detecting nucleic acids
US20230392188A1 (en) * 2022-06-02 2023-12-07 Perkinelmer Health Sciences, Inc. Electrophoresis-mediated characterization of dna content of adeno-associated virus capsids
WO2024081869A1 (en) 2022-10-14 2024-04-18 10X Genomics, Inc. Methods for analysis of biological samples
WO2025125266A1 (en) * 2023-12-11 2025-06-19 Cube Biotech Gmbh Tablets containing fuctionalized agarose particles, method for producing them and use of the tablets

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Publication number Priority date Publication date Assignee Title
US4883867A (en) 1985-11-01 1989-11-28 Becton, Dickinson And Company Detection of reticulocytes, RNA or DNA
US4957870A (en) * 1985-11-01 1990-09-18 Becton, Dickinson And Company Detection of Reticulocytes, RNA and DNA
US5321130A (en) * 1992-02-10 1994-06-14 Molecular Probes, Inc. Unsymmetrical cyanine dyes with a cationic side chain
US5436134A (en) 1993-04-13 1995-07-25 Molecular Probes, Inc. Cyclic-substituted unsymmetrical cyanine dyes
US5658751A (en) 1993-04-13 1997-08-19 Molecular Probes, Inc. Substituted unsymmetrical cyanine dyes with selected permeability
US5534416A (en) 1993-04-13 1996-07-09 Molecular Probes, Inc. Fluorescent viability assay using cyclic-substituted unsymmetrical cyanine dyes
US5656449A (en) * 1995-03-06 1997-08-12 Molecular Probes, Inc. Neutral unsymmetrical cyanine dyes
US7824532B2 (en) * 1995-04-26 2010-11-02 Life Technologies Corporation Apparatus and method for electrophoresis
US5582702A (en) 1995-04-26 1996-12-10 Ethrog Biotechnology Ltd. Apparatus and method for electrophoresis
US6379516B1 (en) 1995-04-26 2002-04-30 Ethrog Biotechnology Ltd. Apparatus and method for electrophoresis
US5929227A (en) 1995-07-12 1999-07-27 The Regents Of The University Of California Dimeric fluorescent energy transfer dyes comprising asymmetric cyanine azole-indolenine chromophores
DE69837839T2 (de) 1997-03-07 2007-12-13 Clare Chemical Research LLC, Denver Fluorometrischer Nachweis mit sichtbarem Light
US5865874A (en) * 1997-06-27 1999-02-02 Duracell Inc. Hydrogen storage alloy
CA2321100A1 (en) 1998-02-19 1999-08-26 Edvotek Articles of manufacture and methods for staining biomolecules
US6562213B1 (en) * 2000-08-30 2003-05-13 Ethrog Biotechnology Ltd. Electrophoresis apparatus for simultaneous loading of multiple samples
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EP1988177A1 (en) 2003-09-30 2008-11-05 Molecular Probes Inc. Detection of immobilised nucleic acid

Also Published As

Publication number Publication date
EP1668162B1 (en) 2009-04-08
US20120058566A1 (en) 2012-03-08
JP2011099862A (ja) 2011-05-19
US7727716B2 (en) 2010-06-01
US20100227331A1 (en) 2010-09-09
JP2007507238A (ja) 2007-03-29
ATE428002T1 (de) 2009-04-15
US20140076726A1 (en) 2014-03-20
WO2005033342A1 (en) 2005-04-14
DE602004020484D1 (https=) 2009-05-20
US20050239096A1 (en) 2005-10-27
US20100216665A1 (en) 2010-08-26
US20130011927A1 (en) 2013-01-10
US7977057B2 (en) 2011-07-12
CA2540508A1 (en) 2005-04-14
US20150247799A1 (en) 2015-09-03
US8969004B2 (en) 2015-03-03
EP1668162A1 (en) 2006-06-14
EP1988177A1 (en) 2008-11-05

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