JP2023503077A - 新規な分枝鎖アミノ酸アミノトランスフェラーゼ変異体及びそれを用いたロイシン生産方法 - Google Patents
新規な分枝鎖アミノ酸アミノトランスフェラーゼ変異体及びそれを用いたロイシン生産方法 Download PDFInfo
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Abstract
Description
1-1.ilvEを含むベクターの作製
分枝鎖アミノ酸アミノトランスフェラーゼ(branched-chain amino acid aminotransferase)活性を有するilvE変異ライブラリーを作製するために、まずilvEの一部を含む組換えベクターを作製した。野生型ilvEのアミノ酸配列及びヌクレオチド配列をそれぞれ配列番号1及び2に示す。コリネバクテリウム・グルタミカム(Corynebacterium glutamicun)ATCC13032の染色体を鋳型とし、配列番号5及び6のプライマーを用いてPCRを行い、その増幅産物をTOPO Cloning Kit(Invitrogen)で大腸菌ベクターpCR2.1にクローニングしてpCR-ilvEを得た。
実施例1-1で作製したベクターに基づいてilvE変異ライブラリーを作製した。ライブラリーは、error-prone PCR kit(clontech Diversify(R) PCR Random Mutagenesis Kit)を用いて作製した。変異が発生する条件で、配列番号5及び6をプライマーとしてPCR反応を行った。具体的には、1000bp当たり0~3つの変異が発生する条件で、94℃で30秒間のpre-heating後に、94℃で30秒間、68℃で1分30秒間の過程を25回繰り返した。ここで、得られたPCR産物をmegaprimer(500~125ng)として、95℃で50秒間、60℃で50秒間、68℃で12分間の過程を25回繰り返し、その後DpnIで処理し、大腸菌DH5αに形質転換してカナマイシン(25mg/L)を含有するLB固体培地に塗抹した。形質転換したコロニー20種を選択してプラスミドを得て、ポリヌクレオチド配列を分析した結果、2 mutations/kbの頻度で異なる位置に変異が導入されたことが確認された。約20,000個の形質転換した大腸菌コロニーを採取してプラスミドを抽出し、これをpTOPO-ilvE-libraryと命名した。
一般に、コリネバクテリウム属野生型の菌株は、ロイシンを生産するとしても非常に微量を生産するにすぎない。よって、ATCC13032由来のロイシン生産菌株を作製し、実施例1-2で作製したライブラリーベクターを導入して変異体を選択した。
野生型コリネバクテリウム・グルタミカムATCC13032由来のロイシン生産菌株を作製するために、イソプロピルリンゴ酸シンターゼ(isopropylmalate synthase, 以下「IPMS」という)変異体を導入した菌株CA13-8100菌株を作製した。
実施例1-2で作製したpTOPO-ilvE-libraryを実施例2-1で作製したロイシン生産株CA13-8100にエレクトロポレーションで形質転換し、その後カナマイシン25mg/Lを含有する栄養培地に塗抹して変異遺伝子が挿入された菌株10,000個のコロニーを確保し、各コロニーをCA13-8100/pTOPO_ilvE(mt)1~CA13-8100/pTOPO_ilvE(mt)10000と命名した。
・栄養培地:グルコース10g,肉汁5g,ポリペプトン10g,塩化ナトリウム2.5g,酵母エキス5g,寒天20g,尿素2g(蒸留水1リットル中)
・生産培地:グルコース50g,硫酸アンモニウム20g,コーンスティープソリッド(Corn Steep Solids)20g,リン酸水素二カリウム1g,硫酸マグネシウム7水塩0.5g,ビオチン100μg,チアミンHCl 1mg,炭酸カルシウム15g(蒸留水1リットル中),pH7.0
実施例2-2で選択した菌株の遺伝子変異を確認するために、配列番号9及び10のプライマーを用いて、CA13-8100/pTOPO_ilvE(mt)3012菌株においてPCRとシーケンシングを行い、ilvE遺伝子を野生型ATCC13032のilvEと比較した。前記菌株は、ilvE遺伝子に変異を含むことが確認された。
3-1.ilvE変異を含む挿入ベクターの作製
実施例2で選択した変異を菌株に導入するために、挿入用ベクターを作製した。ilvE(V156A)変異導入用ベクターの作製には、部位特異的突然変異誘発(Site directed mutagenesis)法を用いた。コリネバクテリウム・グルタミカムATCC13032の染色体を鋳型とし、配列番号11及び12のプライマー、配列番号13及び14のプライマー対を用いてPCRを行った。PCRは、94℃で5分間の変性後、94℃で30秒間の変性、55℃で30秒間のアニーリング、72℃で1分30秒間の重合を30サイクル行い、次いで72℃で5分間の重合反応を行うものとした。その結果、得られた遺伝子断片をPstI及びXbaI制限酵素で切断した線状のpDCベクターとIn-Fusion酵素を用いてDNA断片間の末端15 baseの相同配列をfusionさせてクローニングし、156番目のアミノ酸であるバリン(Val)をアラニン(Ala)に置換するベクターpDC-ilvE(V156A)を作製した。
ロイシン生産菌株であるCA13-8100を実施例3-1で作製したpDC-ilvE(V156A)ベクターで形質転換し、相同性配列の組換えにより染色体上にベクターが挿入された菌株は、カナマイシン(kanamycin)25mg/Lを含有する培地から選択した。選択した1次菌株にさらに2次交差(cross-over)を行い、目標遺伝子の変異が導入された菌株を選定した。最終的に形質転換した菌株にilvE遺伝子変異が導入されたか否かは、配列番号9及び10のプライマーを用いてPCRを行い、その後塩基配列を分析することにより判断し、菌株にilvE変異が導入されたことが確認された。作製されたCA13-8100_ilvE_V156AをCA13-8107と命名した。
実施例3-1で作製した組換えベクターpDC-ilvE(V156A)を染色体上での相同組換えによりロイシン生産菌株であるコリネバクテリウム・グルタミカムKCCM11661P(特許文献5)、KCCM11662P(特許文献5)に形質転換した。前述した2つの菌株は、野生型のコリネバクテリウム・グルタミカムATCC14067と、コリネバクテリウム・グルタミカムATCC13869をN-メチル-N’-ニトロ-N-ニトロソグアニジン(N-Methyl-N'-nitro-Nnitrosoguanidine, NTG)で処理することによりロイシン生産能を付与した変異株である。最終的に形質転換した菌株を対象に、配列番号9及び10のプライマーを用いてPCRを行い、その後塩基配列を分析することにより、ilvE遺伝子に変異が導入されたことが確認された。前記組換え菌株をコリネバクテリウム・グルタミカムKCCM11661P_ilvE_V156A及びKCCM11662P_ilvE_V156Aと命名した。前記菌株のロイシン生成能を確認するために、実施例2-2と同様にフラスコ培養を行い、培養終了後にHPLCを用いた方法によりロイシン生産量を測定した。測定したロイシンの濃度を表3に示す。
Claims (11)
- 配列番号1のアミノ酸配列のN末端から156番目のバリン(V: valine)アミノ酸が他のアミノ酸に置換された分枝鎖アミノ酸アミノトランスフェラーゼ(branched amino acid aminotransferase)変異体。
- 前記156番目のバリンがアラニン(Alanine)に置換された、請求項1に記載の分枝鎖アミノ酸アミノトランスフェラーゼ変異体。
- 前記変異体は、配列番号1のアミノ酸配列と90%以上の相同性又は同一性を有する、請求項1に記載の分枝鎖アミノ酸アミノトランスフェラーゼ変異体。
- 前記変異体は、配列番号3のアミノ酸配列からなる、請求項1に記載の分枝鎖アミノ酸アミノトランスフェラーゼ変異体。
- 請求項1~4のいずれか一項に記載の変異体をコードするポリヌクレオチド。
- 請求項5に記載のポリヌクレオチドを含むベクター。
- 請求項1~4のいずれか一項に記載の変異体、前記変異体をコードするポリヌクレオチド、及び前記ポリヌクレオチドを含むベクターの少なくとも1つを含む、コリネバクテリウム(Corynebacterium sp.)属微生物。
- 前記コリネバクテリウム属微生物は、ロイシン(leucine)を生産する、請求項7に記載のコリネバクテリウム(Corynebacterium sp.)属微生物。
- 前記コリネバクテリウム属微生物は、コリネバクテリウム・グルタミカム(Corynebacterium glutamicum)である、請求項7に記載のコリネバクテリウム属微生物。
- 請求項7に記載の微生物を培地で培養するステップを含む、ロイシン生産方法。
- 前記培養した微生物又は培地からロイシンを分離又は回収するステップをさらに含む、請求項10に記載のロイシン生産方法。
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