JP2016533758A5 - - Google Patents
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- Publication number
- JP2016533758A5 JP2016533758A5 JP2016539634A JP2016539634A JP2016533758A5 JP 2016533758 A5 JP2016533758 A5 JP 2016533758A5 JP 2016539634 A JP2016539634 A JP 2016539634A JP 2016539634 A JP2016539634 A JP 2016539634A JP 2016533758 A5 JP2016533758 A5 JP 2016533758A5
- Authority
- JP
- Japan
- Prior art keywords
- nucleic acid
- subgroup
- acid segment
- target nucleic
- segment
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 150000007523 nucleic acids Chemical class 0.000 claims description 40
- 102000039446 nucleic acids Human genes 0.000 claims description 40
- 108020004707 nucleic acids Proteins 0.000 claims description 40
- 238000000034 method Methods 0.000 claims description 17
- 239000000203 mixture Substances 0.000 claims description 16
- 230000003993 interaction Effects 0.000 claims description 12
- 230000001575 pathological effect Effects 0.000 claims description 10
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 claims 4
- 239000012634 fragment Substances 0.000 claims 4
- 210000004940 nucleus Anatomy 0.000 claims 3
- 108010090804 Streptavidin Proteins 0.000 claims 2
- 210000004436 artificial bacterial chromosome Anatomy 0.000 claims 2
- 229960002685 biotin Drugs 0.000 claims 2
- 235000020958 biotin Nutrition 0.000 claims 2
- 239000011616 biotin Substances 0.000 claims 2
- 210000003855 cell nucleus Anatomy 0.000 claims 2
- 238000004132 cross linking Methods 0.000 claims 2
- 210000005260 human cell Anatomy 0.000 claims 2
- 238000002955 isolation Methods 0.000 claims 2
- 208000023275 Autoimmune disease Diseases 0.000 claims 1
- 208000012239 Developmental disease Diseases 0.000 claims 1
- 208000026350 Inborn Genetic disease Diseases 0.000 claims 1
- 206010028980 Neoplasm Diseases 0.000 claims 1
- 201000011510 cancer Diseases 0.000 claims 1
- 239000003153 chemical reaction reagent Substances 0.000 claims 1
- 239000003623 enhancer Substances 0.000 claims 1
- 208000016361 genetic disease Diseases 0.000 claims 1
- 210000004962 mammalian cell Anatomy 0.000 claims 1
- 230000001105 regulatory effect Effects 0.000 claims 1
- 238000010008 shearing Methods 0.000 claims 1
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GB1315777.1A GB2517936B (en) | 2013-09-05 | 2013-09-05 | Chromosome conformation capture method including selection and enrichment steps |
| GB1315777.1 | 2013-09-05 | ||
| PCT/GB2014/052664 WO2015033134A1 (en) | 2013-09-05 | 2014-09-04 | Chromosome conformation capture method including selection and enrichment steps |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2016533758A JP2016533758A (ja) | 2016-11-04 |
| JP2016533758A5 true JP2016533758A5 (enExample) | 2019-01-17 |
| JP6514210B2 JP6514210B2 (ja) | 2019-05-22 |
Family
ID=49486746
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2016539634A Active JP6514210B2 (ja) | 2013-09-05 | 2014-09-04 | 選択及び濃縮ステップを含む染色体高次構造捕捉方法 |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US20160194713A1 (enExample) |
| EP (1) | EP3041951B1 (enExample) |
| JP (1) | JP6514210B2 (enExample) |
| CN (1) | CN105658813B (enExample) |
| AU (2) | AU2014316880A1 (enExample) |
| CA (1) | CA2922244C (enExample) |
| GB (1) | GB2517936B (enExample) |
| WO (1) | WO2015033134A1 (enExample) |
Families Citing this family (12)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2017066907A1 (zh) * | 2015-10-19 | 2017-04-27 | 安诺优达基因科技(北京)有限公司 | 一种构建高可利用数据率的Hi-C文库的方法 |
| GB201518843D0 (en) * | 2015-10-23 | 2015-12-09 | Isis Innovation | Method of analysing DNA sequences |
| CN107119120A (zh) * | 2017-05-04 | 2017-09-01 | 河海大学常州校区 | 一种基于染色质3d构象技术的关键作用分子检测方法 |
| CN108300767B (zh) * | 2017-10-27 | 2021-08-20 | 清华大学 | 一种核酸复合体中核酸区段相互作用的分析方法 |
| CN108220394B (zh) * | 2018-01-05 | 2021-03-23 | 清华大学 | 基因调控性染色质相互作用的鉴定方法、系统及其应用 |
| CN109448783B (zh) * | 2018-08-07 | 2022-05-13 | 清华大学 | 一种染色质拓扑结构域边界的分析方法 |
| JP7549582B2 (ja) | 2018-10-01 | 2024-09-11 | ロンザ リミテッド | 予測可能かつ安定な導入遺伝子発現を有するｓｓｉ細胞および形成の方法 |
| US20220213546A1 (en) * | 2019-05-22 | 2022-07-07 | Oxford Nanopore Technologies Plc | Protocol for detecting interactions within one or more dna molecules within a cell |
| GB201914325D0 (en) | 2019-10-04 | 2019-11-20 | Babraham Inst | Novel meethod |
| WO2021097284A1 (en) * | 2019-11-15 | 2021-05-20 | Phase Genomics Inc. | Chomosome conformation capture from tissue samples |
| US20230140574A1 (en) * | 2020-03-31 | 2023-05-04 | Qiagen Gmbh | Nucleic acid purification from fixed biological samples |
| GB202319199D0 (en) | 2023-12-14 | 2024-01-31 | Enhanc3D Genomics Ltd | Conformation capture methods |
Family Cites Families (10)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP1899488B1 (en) * | 2005-07-04 | 2015-09-16 | Erasmus University Medical Center | Chromosome conformation capture-on-chip (4c) assay |
| EP2121977B1 (en) * | 2007-01-11 | 2017-06-21 | Erasmus University Medical Center | Circular chromosome conformation capture (4c) |
| WO2009099602A1 (en) * | 2008-02-04 | 2009-08-13 | Massachusetts Institute Of Technology | Selection of nucleic acids by solution hybridization to oligonucleotide baits |
| US9434985B2 (en) * | 2008-09-25 | 2016-09-06 | University Of Massachusetts | Methods of identifying interactions between genomic loci |
| JP5413924B2 (ja) * | 2009-08-21 | 2014-02-12 | 国立大学法人大阪大学 | 特定ゲノム領域の単離方法 |
| PT2591125T (pt) * | 2010-07-09 | 2018-05-09 | Cergentis B V | Estratégias 3-d de sequenciação de regiões genómicas de interesse |
| US20130230857A1 (en) * | 2010-11-05 | 2013-09-05 | The Broad Institute, Inc. | Hybrid selection using genome-wide baits for selective genome enrichment in mixed samples |
| US9365897B2 (en) * | 2011-02-08 | 2016-06-14 | Illumina, Inc. | Selective enrichment of nucleic acids |
| WO2012159025A2 (en) * | 2011-05-18 | 2012-11-22 | Life Technologies Corporation | Chromosome conformation analysis |
| US8663924B2 (en) * | 2011-11-30 | 2014-03-04 | Agilent Technologies, Inc. | Quantitative PCR-based method to predict the efficiency of target enrichment for next-generation sequencing using repetitive DNA elements (lines/sines) as negative controls |
-
2013
- 2013-09-05 GB GB1315777.1A patent/GB2517936B/en active Active
-
2014
- 2014-09-04 AU AU2014316880A patent/AU2014316880A1/en not_active Abandoned
- 2014-09-04 EP EP14765989.0A patent/EP3041951B1/en active Active
- 2014-09-04 CN CN201480049002.8A patent/CN105658813B/zh active Active
- 2014-09-04 WO PCT/GB2014/052664 patent/WO2015033134A1/en not_active Ceased
- 2014-09-04 JP JP2016539634A patent/JP6514210B2/ja active Active
- 2014-09-04 US US14/916,286 patent/US20160194713A1/en not_active Abandoned
- 2014-09-04 CA CA2922244A patent/CA2922244C/en active Active
-
2020
- 2020-11-30 AU AU2020280999A patent/AU2020280999B2/en active Active
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