JP2015536661A5 - - Google Patents
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- Publication number
- JP2015536661A5 JP2015536661A5 JP2015544446A JP2015544446A JP2015536661A5 JP 2015536661 A5 JP2015536661 A5 JP 2015536661A5 JP 2015544446 A JP2015544446 A JP 2015544446A JP 2015544446 A JP2015544446 A JP 2015544446A JP 2015536661 A5 JP2015536661 A5 JP 2015536661A5
- Authority
- JP
- Japan
- Prior art keywords
- target region
- region
- alternative
- sequence
- genome
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 238000000034 method Methods 0.000 claims 17
- 239000000523 sample Substances 0.000 claims 9
- 238000012163 sequencing technique Methods 0.000 claims 8
- 238000006467 substitution reaction Methods 0.000 claims 3
- 239000012472 biological sample Substances 0.000 claims 2
- 230000035772 mutation Effects 0.000 claims 2
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US13/689,314 US9218450B2 (en) | 2012-11-29 | 2012-11-29 | Accurate and fast mapping of reads to genome |
| US13/689,314 | 2012-11-29 | ||
| PCT/EP2013/074799 WO2014083023A1 (en) | 2012-11-29 | 2013-11-27 | Accurate and fast mapping of targeted sequencing reads |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2015536661A JP2015536661A (ja) | 2015-12-24 |
| JP2015536661A5 true JP2015536661A5 (cg-RX-API-DMAC7.html) | 2017-01-19 |
| JP6240210B2 JP6240210B2 (ja) | 2017-11-29 |
Family
ID=49641777
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2015544446A Active JP6240210B2 (ja) | 2012-11-29 | 2013-11-27 | 標的シーケンシングリードの正確かつ迅速なマッピング |
Country Status (7)
| Country | Link |
|---|---|
| US (2) | US9218450B2 (cg-RX-API-DMAC7.html) |
| EP (1) | EP2926288B1 (cg-RX-API-DMAC7.html) |
| JP (1) | JP6240210B2 (cg-RX-API-DMAC7.html) |
| CN (1) | CN104937598B (cg-RX-API-DMAC7.html) |
| CA (1) | CA2891731C (cg-RX-API-DMAC7.html) |
| ES (1) | ES2869292T3 (cg-RX-API-DMAC7.html) |
| WO (1) | WO2014083023A1 (cg-RX-API-DMAC7.html) |
Families Citing this family (25)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP2697397B1 (en) | 2011-04-15 | 2017-04-05 | The Johns Hopkins University | Safe sequencing system |
| WO2014070462A1 (en) | 2012-10-29 | 2014-05-08 | The Johns Hopkins University | Papanicolaou test for ovarian and endometrial cancers |
| US10216895B2 (en) * | 2014-05-12 | 2019-02-26 | Roche Molecular Systems, Inc. | Rare variant calls in ultra-deep sequencing |
| ES2898435T3 (es) * | 2014-09-03 | 2022-03-07 | Otsuka Pharma Co Ltd | Dispositivo de ayuda para la determinación de patología, método, programa y medio de almacenamiento |
| US20160125130A1 (en) * | 2014-11-05 | 2016-05-05 | Agilent Technologies, Inc. | Method for assigning target-enriched sequence reads to a genomic location |
| US9857328B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same |
| EP3235010A4 (en) | 2014-12-18 | 2018-08-29 | Agilome, Inc. | Chemically-sensitive field effect transistor |
| US10020300B2 (en) | 2014-12-18 | 2018-07-10 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
| US9618474B2 (en) | 2014-12-18 | 2017-04-11 | Edico Genome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
| US10006910B2 (en) | 2014-12-18 | 2018-06-26 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same |
| US9859394B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
| US20160300013A1 (en) * | 2015-04-10 | 2016-10-13 | Agilent Technologies, Inc. | METHOD FOR SIMULTANEOUS DETECTION OF GENOME-WIDE COPY NUMBER CHANGES, cnLOH, INDELS, AND GENE MUTATIONS |
| US10395759B2 (en) | 2015-05-18 | 2019-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for copy number variant detection |
| JP6675164B2 (ja) * | 2015-07-28 | 2020-04-01 | 株式会社理研ジェネシス | 変異判定方法、変異判定プログラムおよび記録媒体 |
| US11286531B2 (en) | 2015-08-11 | 2022-03-29 | The Johns Hopkins University | Assaying ovarian cyst fluid |
| JP6765433B2 (ja) | 2016-02-12 | 2020-10-07 | リジェネロン・ファーマシューティカルズ・インコーポレイテッドＲｅｇｅｎｅｒｏｎ Ｐｈａｒｍａｃｅｕｔｉｃａｌｓ， Ｉｎｃ． | 異常な核型の検出のための方法 |
| WO2017201081A1 (en) | 2016-05-16 | 2017-11-23 | Agilome, Inc. | Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids |
| MX2019000762A (es) * | 2016-07-21 | 2019-10-30 | Walmart Apollo Llc | Caracterizaciones basadas en vectores de productos e individuos con respecto a la seleccion de articulos para ubicaciones de tiendas. |
| IL319255A (en) | 2017-08-07 | 2025-04-01 | Univ Johns Hopkins | Methods and materials for cancer assessment and treatment |
| JP7320345B2 (ja) * | 2017-10-27 | 2023-08-03 | シスメックス株式会社 | 遺伝子解析方法、遺伝子解析装置、遺伝子解析システム、プログラム、および記録媒体 |
| JP7054133B2 (ja) | 2017-11-09 | 2022-04-13 | 国立研究開発法人国立がん研究センター | 配列解析方法、配列解析装置、参照配列の生成方法、参照配列生成装置、プログラム、および記録媒体 |
| US10854317B2 (en) * | 2017-12-29 | 2020-12-01 | Act Genomics Co., Ltd. | Method and system for sequence alignment and variant calling |
| WO2021163546A1 (en) | 2020-02-14 | 2021-08-19 | The Johns Hopkins University | Methods and materials for assessing nucleic acids |
| CN111477274B (zh) * | 2020-04-02 | 2020-11-24 | 上海之江生物科技股份有限公司 | 微生物目标片段中特异性区域的识别方法、装置及应用 |
| KR20230009877A (ko) * | 2020-05-08 | 2023-01-17 | 일루미나, 인코포레이티드 | 게놈 서열분석 및 검출 기술 |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| UY24389A1 (es) * | 1995-12-06 | 2001-10-25 | Karlsruhe Forschzent | Composición farmacéutica para el tratamiento de carcinoma de epitelio plano |
| US7809509B2 (en) | 2001-05-08 | 2010-10-05 | Ip Genesis, Inc. | Comparative mapping and assembly of nucleic acid sequences |
| US20030138778A1 (en) * | 2001-11-30 | 2003-07-24 | Garner Harold R. | Prediction of disease-causing alleles from sequence context |
| US20040229269A1 (en) | 2003-05-15 | 2004-11-18 | Ghazala Hashmi | Hybridization-mediated analysis of polymorphisms |
| CA2563694C (en) * | 2004-04-23 | 2014-01-07 | Oxonica, Inc. | Surface enhanced spectroscopy-active composite nanoparticles |
| CN1277924C (zh) * | 2004-06-25 | 2006-10-04 | 湖南西城杂交水稻基因科技有限公司 | 利用可转化大片段基因组文库发掘野生稻有利基因的方法 |
| US20140066317A1 (en) * | 2012-09-04 | 2014-03-06 | Guardant Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
| KR102393608B1 (ko) * | 2012-09-04 | 2022-05-03 | 가던트 헬쓰, 인크. | 희귀 돌연변이 및 카피수 변이를 검출하기 위한 시스템 및 방법 |
-
2012
- 2012-11-29 US US13/689,314 patent/US9218450B2/en active Active
-
2013
- 2013-11-27 JP JP2015544446A patent/JP6240210B2/ja active Active
- 2013-11-27 CA CA2891731A patent/CA2891731C/en active Active
- 2013-11-27 WO PCT/EP2013/074799 patent/WO2014083023A1/en not_active Ceased
- 2013-11-27 EP EP13795516.7A patent/EP2926288B1/en active Active
- 2013-11-27 ES ES13795516T patent/ES2869292T3/es active Active
- 2013-11-27 CN CN201380062074.1A patent/CN104937598B/zh active Active
-
2015
- 2015-11-30 US US14/954,808 patent/US10127351B2/en active Active
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