JP2013535986A - 核酸の捕捉法および配列決定法 - Google Patents

核酸の捕捉法および配列決定法 Download PDF

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JP2013535986A
JP2013535986A JP2013526153A JP2013526153A JP2013535986A JP 2013535986 A JP2013535986 A JP 2013535986A JP 2013526153 A JP2013526153 A JP 2013526153A JP 2013526153 A JP2013526153 A JP 2013526153A JP 2013535986 A JP2013535986 A JP 2013535986A
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nucleic acid
polymerase
genomic dna
labeled
dna fragment
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JP2013535986A5 (OSRAM
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ソマセカー セシャギリ，
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ジェネンテック， インコーポレイテッド
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Publication of JP2013535986A publication Critical patent/JP2013535986A/ja
Publication of JP2013535986A5 publication Critical patent/JP2013535986A5/ja
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1072—Differential gene expression library synthesis, e.g. subtracted libraries, differential screening
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Biomedical Technology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Plant Pathology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
JP2013526153A 2010-08-27 2011-08-25 核酸の捕捉法および配列決定法 Pending JP2013535986A (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US40235010P 2010-08-27 2010-08-27
US61/402,350 2010-08-27
PCT/US2011/049151 WO2012027572A2 (en) 2010-08-27 2011-08-25 Methods for nucleic acid capture and sequencing

Publications (2)

Publication Number Publication Date
JP2013535986A true JP2013535986A (ja) 2013-09-19
JP2013535986A5 JP2013535986A5 (OSRAM) 2014-10-09

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JP2013526153A Pending JP2013535986A (ja) 2010-08-27 2011-08-25 核酸の捕捉法および配列決定法

Country Status (10)

Country Link
US (1) US20130324419A1 (OSRAM)
EP (1) EP2609214A2 (OSRAM)
JP (1) JP2013535986A (OSRAM)
KR (1) KR20130101031A (OSRAM)
CN (1) CN103080338A (OSRAM)
BR (1) BR112013002299A2 (OSRAM)
CA (1) CA2803693A1 (OSRAM)
MX (1) MX2013001799A (OSRAM)
RU (1) RU2013113407A (OSRAM)
WO (1) WO2012027572A2 (OSRAM)

Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2018501776A (ja) * 2014-10-17 2018-01-25 イルミナ ケンブリッジ リミテッド 連続性を維持した転位
US11149310B2 (en) 2013-12-20 2021-10-19 Illumina, Inc. Preserving genomic connectivity information in fragmented genomic DNA samples
US11299730B2 (en) 2011-02-02 2022-04-12 University Of Washington Through Its Center For Commercialization Massively parallel contiguity mapping
US11319534B2 (en) 2013-03-13 2022-05-03 Illumina, Inc. Methods and compositions for nucleic acid sequencing
US11993772B2 (en) 2011-02-10 2024-05-28 Illumina, Inc. Linking sequence reads using paired code tags

Families Citing this family (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
NO2694769T3 (OSRAM) 2012-03-06 2018-03-03
EP2875173B1 (en) * 2012-07-17 2017-06-28 Counsyl, Inc. System and methods for detecting genetic variation
US9683230B2 (en) 2013-01-09 2017-06-20 Illumina Cambridge Limited Sample preparation on a solid support
LT3207134T (lt) * 2014-10-17 2019-09-10 Illumina Cambridge Limited Sukibimą išsauganti transpozicija
US9859394B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10429342B2 (en) 2014-12-18 2019-10-01 Edico Genome Corporation Chemically-sensitive field effect transistor
US9857328B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same
US9618474B2 (en) 2014-12-18 2017-04-11 Edico Genome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10020300B2 (en) 2014-12-18 2018-07-10 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10006910B2 (en) 2014-12-18 2018-06-26 Agilome, Inc. Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same
US10395759B2 (en) * 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
WO2017201081A1 (en) 2016-05-16 2017-11-23 Agilome, Inc. Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids
EP3650553B1 (en) * 2018-11-07 2023-07-12 Siemens Healthcare GmbH Method for detection of specific nucleic acids

Citations (4)

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Publication number Priority date Publication date Assignee Title
JPH03504324A (ja) * 1988-05-24 1991-09-26 パウルセン，グンナー 遺伝子の検査方法
US6982146B1 (en) * 1999-08-30 2006-01-03 The United States Of America As Represented By The Department Of Health And Human Services High speed parallel molecular nucleic acid sequencing
WO2008096146A1 (en) * 2007-02-07 2008-08-14 Solexa Limited Preparation of templates for methylation analysis
WO2008103848A1 (en) * 2007-02-21 2008-08-28 Invitrogen Corporation Materials and methods for single molecule nucleic acid sequencing

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WO2008115185A2 (en) 2006-04-24 2008-09-25 Nimblegen Systems, Inc. Use of microarrays for genomic representation selection
EP2188389A4 (en) * 2007-08-15 2011-12-07 Univ Hong Kong METHOD AND COMPOSITIONS FOR BISULFIT DNA SEQUENCING WITH HIGH PERFORMANCE AND BENEFITS
US20110281740A1 (en) 2008-06-30 2011-11-17 Joseph Beechem Methods for Real Time Single Molecule Sequencing
US8795961B2 (en) * 2008-09-05 2014-08-05 Pacific Biosciences Of California, Inc. Preparations, compositions, and methods for nucleic acid sequencing
US20120149593A1 (en) 2009-01-23 2012-06-14 Hicks James B Methods and arrays for profiling dna methylation

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH03504324A (ja) * 1988-05-24 1991-09-26 パウルセン，グンナー 遺伝子の検査方法
US6982146B1 (en) * 1999-08-30 2006-01-03 The United States Of America As Represented By The Department Of Health And Human Services High speed parallel molecular nucleic acid sequencing
WO2008096146A1 (en) * 2007-02-07 2008-08-14 Solexa Limited Preparation of templates for methylation analysis
WO2008103848A1 (en) * 2007-02-21 2008-08-28 Invitrogen Corporation Materials and methods for single molecule nucleic acid sequencing

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
D.A.KHODAKOV, ET AL., BIOTECHNIQUES, 2008, 44(2), PP241-248, JPN6015040742, ISSN: 0003173157 *
OZSOLAK, F. ET AL., DIRECT RNA SEQUENCING., NATURE 461:814-818, 2009, JPN6015040741, ISSN: 0003173156 *
S.A.AKSYONOV, ET AL., ANAL. BIOCHEM., 2006, 348, PP127-138, JPN6015040743, ISSN: 0003173158 *

Cited By (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11299730B2 (en) 2011-02-02 2022-04-12 University Of Washington Through Its Center For Commercialization Massively parallel contiguity mapping
US11999951B2 (en) 2011-02-02 2024-06-04 University Of Washington Through Its Center For Commercialization Massively parallel contiguity mapping
US11993772B2 (en) 2011-02-10 2024-05-28 Illumina, Inc. Linking sequence reads using paired code tags
US11319534B2 (en) 2013-03-13 2022-05-03 Illumina, Inc. Methods and compositions for nucleic acid sequencing
US11149310B2 (en) 2013-12-20 2021-10-19 Illumina, Inc. Preserving genomic connectivity information in fragmented genomic DNA samples
JP2018501776A (ja) * 2014-10-17 2018-01-25 イルミナ ケンブリッジ リミテッド 連続性を維持した転位
JP2021052779A (ja) * 2014-10-17 2021-04-08 イルミナ ケンブリッジ リミテッド 連続性を維持した転位
JP7127104B2 (ja) 2014-10-17 2022-08-29 イルミナ ケンブリッジ リミテッド 連続性を維持した転位
JP2022172158A (ja) * 2014-10-17 2022-11-15 イルミナ ケンブリッジ リミテッド 連続性を維持した転位
US11873480B2 (en) 2014-10-17 2024-01-16 Illumina Cambridge Limited Contiguity preserving transposition
JP7532455B2 (ja) 2014-10-17 2024-08-13 イルミナ ケンブリッジ リミテッド 連続性を維持した転位
JP2024160269A (ja) * 2014-10-17 2024-11-13 イルミナ ケンブリッジ リミテッド 連続性を維持した転位

Also Published As

Publication number Publication date
BR112013002299A2 (pt) 2016-05-24
US20130324419A1 (en) 2013-12-05
KR20130101031A (ko) 2013-09-12
CN103080338A (zh) 2013-05-01
EP2609214A2 (en) 2013-07-03
MX2013001799A (es) 2013-05-20
WO2012027572A2 (en) 2012-03-01
WO2012027572A3 (en) 2012-06-07
RU2013113407A (ru) 2014-10-10
CA2803693A1 (en) 2012-03-01

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