JP2013527848A5 - - Google Patents
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- JP2013527848A5 JP2013527848A5 JP2013508222A JP2013508222A JP2013527848A5 JP 2013527848 A5 JP2013527848 A5 JP 2013527848A5 JP 2013508222 A JP2013508222 A JP 2013508222A JP 2013508222 A JP2013508222 A JP 2013508222A JP 2013527848 A5 JP2013527848 A5 JP 2013527848A5
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- JP
- Japan
- Prior art keywords
- spot
- substrate
- field
- spots
- biochemical
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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- 239000000758 substrate Substances 0.000 claims 10
- 238000012217 deletion Methods 0.000 claims 7
- 230000037430 deletion Effects 0.000 claims 7
- 238000000034 method Methods 0.000 claims 7
- 238000002474 experimental method Methods 0.000 claims 6
- 230000000737 periodic effect Effects 0.000 claims 2
- 239000007787 solid Substances 0.000 claims 2
- 241000287462 Phalacrocorax carbo Species 0.000 claims 1
- 238000003384 imaging method Methods 0.000 claims 1
- 239000011807 nanoball Substances 0.000 claims 1
- 239000000126 substance Substances 0.000 claims 1
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US33013010P | 2010-04-30 | 2010-04-30 | |
| US61/330,130 | 2010-04-30 | ||
| US13/092,618 | 2011-04-22 | ||
| US13/092,618 US8774494B2 (en) | 2010-04-30 | 2011-04-22 | Method and system for accurate alignment and registration of array for DNA sequencing |
| PCT/US2011/034178 WO2011137183A1 (en) | 2010-04-30 | 2011-04-27 | Method and system for accurate alignment and registration of array for dna sequencing |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2014235627A Division JP6042859B2 (ja) | 2010-04-30 | 2014-11-20 | Dnaシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置 |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2013527848A JP2013527848A (ja) | 2013-07-04 |
| JP2013527848A5 true JP2013527848A5 (enExample) | 2014-07-17 |
| JP5654668B2 JP5654668B2 (ja) | 2015-01-14 |
Family
ID=44858300
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2013508222A Active JP5654668B2 (ja) | 2010-04-30 | 2011-04-27 | Dnaシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及びシステム |
| JP2014235627A Active JP6042859B2 (ja) | 2010-04-30 | 2014-11-20 | Dnaシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2014235627A Active JP6042859B2 (ja) | 2010-04-30 | 2014-11-20 | Dnaシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置 |
Country Status (6)
| Country | Link |
|---|---|
| US (2) | US8774494B2 (enExample) |
| EP (2) | EP3043319A1 (enExample) |
| JP (2) | JP5654668B2 (enExample) |
| CN (1) | CN103025927B (enExample) |
| SG (1) | SG184963A1 (enExample) |
| WO (1) | WO2011137183A1 (enExample) |
Families Citing this family (44)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DK2215209T3 (en) | 2007-10-30 | 2018-09-03 | Complete Genomics Inc | DEVICE FOR HIGH-THROUGHPUT SEQUENCE OF NUCLEIC ACIDS |
| US8774494B2 (en) | 2010-04-30 | 2014-07-08 | Complete Genomics, Inc. | Method and system for accurate alignment and registration of array for DNA sequencing |
| US9880089B2 (en) | 2010-08-31 | 2018-01-30 | Complete Genomics, Inc. | High-density devices with synchronous tracks for quad-cell based alignment correction |
| US9671344B2 (en) | 2010-08-31 | 2017-06-06 | Complete Genomics, Inc. | High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging |
| US10559048B2 (en) | 2011-07-13 | 2020-02-11 | The Multiple Myeloma Research Foundation, Inc. | Methods for data collection and distribution |
| WO2013110574A1 (en) | 2012-01-27 | 2013-08-01 | Ventana Medical Systems, Inc. | Devices and methods for detecting bio-analytes using optically decipherable patterns |
| US9135497B2 (en) * | 2012-01-27 | 2015-09-15 | National Instruments Corporation | Identifying randomly distributed microparticles in images to sequence a polynucleotide |
| CA2891939C (en) | 2012-11-19 | 2020-10-27 | Apton Biosystems, Inc. | Digital analysis of molecular analytes using single molecule detection |
| US10829816B2 (en) | 2012-11-19 | 2020-11-10 | Apton Biosystems, Inc. | Methods of analyte detection |
| US9146248B2 (en) | 2013-03-14 | 2015-09-29 | Intelligent Bio-Systems, Inc. | Apparatus and methods for purging flow cells in nucleic acid sequencing instruments |
| US9591268B2 (en) | 2013-03-15 | 2017-03-07 | Qiagen Waltham, Inc. | Flow cell alignment methods and systems |
| US10088658B2 (en) * | 2013-03-18 | 2018-10-02 | General Electric Company | Referencing in multi-acquisition slide imaging |
| EP2976434B1 (en) * | 2013-03-18 | 2017-08-02 | Life Technologies Corporation | Methods and systems for analyzing biological reaction systems |
| EP3036358B8 (en) | 2013-08-22 | 2023-11-22 | Pacific Biosciences of California, Inc. | Digital analysis of molecular analytes using electrical methods |
| US9519823B2 (en) * | 2013-10-04 | 2016-12-13 | The University Of Manchester | Biomarker method |
| US9953417B2 (en) | 2013-10-04 | 2018-04-24 | The University Of Manchester | Biomarker method |
| US10711294B2 (en) | 2014-12-26 | 2020-07-14 | Hitachi High-Tech Corporation | Nucleic acid analysis device |
| JP2016174578A (ja) * | 2015-03-20 | 2016-10-06 | 東ソー株式会社 | 微小粒子選別装置および前記装置を備えた微小粒子回収装置 |
| US9330932B1 (en) * | 2015-03-31 | 2016-05-03 | Micron Technology, Inc. | Methods of fabricating features associated with semiconductor substrates |
| CN109074640A (zh) * | 2015-12-10 | 2018-12-21 | 凯杰有限公司 | 用于确定数字图像中至少一个对象的整体亮度的方法 |
| JP6672938B2 (ja) * | 2016-03-25 | 2020-03-25 | 横浜ゴム株式会社 | 周波数選択板の設計方法および周波数選択板設計プログラム |
| US10467749B2 (en) * | 2016-10-10 | 2019-11-05 | Genemind Biosciences Company Limited | Method and system for processing an image comprising spots in nucleic acid sequencing |
| EP3548652B1 (en) * | 2016-12-01 | 2024-04-03 | Nautilus Subsidiary, Inc. | Methods of assaying proteins |
| CN114921537A (zh) | 2017-03-17 | 2022-08-19 | 雅普顿生物系统公司 | 测序和高分辨率成像 |
| MX389484B (es) | 2017-11-13 | 2025-03-20 | The Multiple Myeloma Res Foundation Inc | Base de datos, de datos moleculares, omicos, de inmunoterapia, metabolicos, epigeneticos y clinicos, integrados |
| JP7062926B2 (ja) * | 2017-11-24 | 2022-05-09 | 凸版印刷株式会社 | 呈色反応検出システム、呈色反応検出方法及びプログラム |
| CA3086915A1 (en) | 2017-12-29 | 2019-07-04 | Sujal M. Patel | Decoding approaches for protein identification |
| CA3096723C (en) * | 2018-04-10 | 2023-10-24 | Mgi Tech Co., Ltd. | Fluorescence image registration method, gene sequencing instrument and system, and storage medium |
| US11435283B2 (en) | 2018-04-17 | 2022-09-06 | Sharif University Of Technology | Optically detecting mutations in a sequence of DNA |
| CN109035164B (zh) * | 2018-07-13 | 2022-03-04 | 北京控制工程研究所 | 一种快速鲁棒图像杂光抑制的方法及系统 |
| EP3843032A4 (en) * | 2018-08-22 | 2021-09-15 | GeneMind Biosciences Company Limited | METHOD AND DEVICE FOR IMAGE REGISTRATION AND COMPUTER PROGRAM PRODUCT |
| WO2020061237A1 (en) | 2018-09-19 | 2020-03-26 | Apton Biosystems, Inc. | Densely-packed analyte layers and detection methods |
| WO2020145124A1 (ja) * | 2019-01-09 | 2020-07-16 | 株式会社日立ハイテク | 核酸分析用基板、核酸分析用フローセル、及び画像解析方法 |
| CN112204615B (zh) * | 2019-01-31 | 2023-05-02 | 深圳华大生命科学研究院 | 荧光图像配准方法、基因测序仪及系统、存储介质 |
| US11514575B2 (en) * | 2019-10-01 | 2022-11-29 | 10X Genomics, Inc. | Systems and methods for identifying morphological patterns in tissue samples |
| AU2020388047A1 (en) | 2019-11-18 | 2022-06-23 | 10X Genomics, Inc. | Systems and methods for tissue classification |
| WO2021102005A1 (en) | 2019-11-22 | 2021-05-27 | 10X Genomics, Inc. | Systems and methods for spatial analysis of analytes using fiducial alignment |
| WO2021163630A1 (en) | 2020-02-13 | 2021-08-19 | 10X Genomics, Inc. | Systems and methods for joint interactive visualization of gene expression and dna chromatin accessibility |
| CN111407222B (zh) * | 2020-04-27 | 2024-11-29 | 重庆金山医疗技术研究院有限公司 | 一种电子内窥镜传像组件景深调试装置及调试方法 |
| EP4053794A1 (en) * | 2021-03-05 | 2022-09-07 | Leica Microsystems CMS GmbH | Multispectral microscope system and method for registering first and second images by means thereof |
| EP4181077A1 (en) * | 2021-11-11 | 2023-05-17 | Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. | Method of evaluating at least one image of at least one micro-array |
| FR3133474B1 (fr) * | 2022-03-11 | 2024-03-22 | Aryballe | Dispositif et procédé de caractérisation d’un alignement de caméra dans un capteur à puce photonique |
| EP4435717A1 (en) * | 2023-03-24 | 2024-09-25 | QIAGEN GmbH | Method for providing an analysis of partition image data |
| CN119913026B (zh) * | 2023-10-30 | 2025-12-02 | 迈克医疗电子有限公司 | 数字pcr仪及其通道微滴对齐方法 |
Family Cites Families (55)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4683195A (en) | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
| US4965188A (en) | 1986-08-22 | 1990-10-23 | Cetus Corporation | Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme |
| US4683202A (en) | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
| US4800159A (en) | 1986-02-07 | 1989-01-24 | Cetus Corporation | Process for amplifying, detecting, and/or cloning nucleic acid sequences |
| US6610256B2 (en) | 1989-04-05 | 2003-08-26 | Wisconsin Alumni Research Foundation | Image processing and analysis of individual nucleic acid molecules |
| CA2020958C (en) | 1989-07-11 | 2005-01-11 | Daniel L. Kacian | Nucleic acid sequence amplification methods |
| US5210015A (en) | 1990-08-06 | 1993-05-11 | Hoffman-La Roche Inc. | Homogeneous assay system using the nuclease activity of a nucleic acid polymerase |
| US6401267B1 (en) | 1993-09-27 | 2002-06-11 | Radoje Drmanac | Methods and compositions for efficient nucleic acid sequencing |
| US5854033A (en) | 1995-11-21 | 1998-12-29 | Yale University | Rolling circle replication reporter systems |
| AU726501B2 (en) | 1996-06-04 | 2000-11-09 | University Of Utah Research Foundation | Monitoring hybridization during PCR |
| GB9620209D0 (en) | 1996-09-27 | 1996-11-13 | Cemu Bioteknik Ab | Method of sequencing DNA |
| US6309824B1 (en) | 1997-01-16 | 2001-10-30 | Hyseq, Inc. | Methods for analyzing a target nucleic acid using immobilized heterogeneous mixtures of oligonucleotide probes |
| WO1999019341A1 (en) | 1997-10-10 | 1999-04-22 | President & Fellows Of Harvard College | Replica amplification of nucleic acid arrays |
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| CA2342838A1 (en) | 1998-09-15 | 2000-03-23 | Yale University | Molecular cloning using rolling circle amplification |
| DE60042775D1 (de) | 1999-01-06 | 2009-10-01 | Callida Genomics Inc | Verbesserte sequenzierung mittels hybridisierung durch verwendung von sondengemischen |
| GB9901475D0 (en) | 1999-01-22 | 1999-03-17 | Pyrosequencing Ab | A method of DNA sequencing |
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| US6818395B1 (en) | 1999-06-28 | 2004-11-16 | California Institute Of Technology | Methods and apparatus for analyzing polynucleotide sequences |
| US6754375B1 (en) | 1999-07-16 | 2004-06-22 | Packard Bioscience Company | Method and system for interactively developing at least one grid pattern and computer-readable storage medium having a program for executing the method |
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| US7440637B2 (en) * | 2000-07-21 | 2008-10-21 | The Trustees Of Columbia University In The City Of New York | Method and apparatus for image mosaicing |
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| KR20110053416A (ko) * | 2008-07-15 | 2011-05-23 | 재단법인 한국파스퇴르연구소 | 기판상의 피처들을 이미지화하는 방법 및 장치 |
| US8774494B2 (en) | 2010-04-30 | 2014-07-08 | Complete Genomics, Inc. | Method and system for accurate alignment and registration of array for DNA sequencing |
| US9880089B2 (en) | 2010-08-31 | 2018-01-30 | Complete Genomics, Inc. | High-density devices with synchronous tracks for quad-cell based alignment correction |
| US9671344B2 (en) | 2010-08-31 | 2017-06-06 | Complete Genomics, Inc. | High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging |
| US8175452B1 (en) | 2010-10-26 | 2012-05-08 | Complete Genomics, Inc. | Method and system for imaging high density biochemical arrays with sub-pixel alignment |
-
2011
- 2011-04-22 US US13/092,618 patent/US8774494B2/en active Active
- 2011-04-27 EP EP16152982.1A patent/EP3043319A1/en not_active Ceased
- 2011-04-27 SG SG2012078044A patent/SG184963A1/en unknown
- 2011-04-27 CN CN201180021839.8A patent/CN103025927B/zh active Active
- 2011-04-27 EP EP11775531.4A patent/EP2563953A4/en not_active Ceased
- 2011-04-27 JP JP2013508222A patent/JP5654668B2/ja active Active
- 2011-04-27 WO PCT/US2011/034178 patent/WO2011137183A1/en not_active Ceased
-
2014
- 2014-06-19 US US14/309,049 patent/US9359641B2/en active Active
- 2014-11-20 JP JP2014235627A patent/JP6042859B2/ja active Active
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