JP2013527848A5 - - Google Patents

Download PDF

Info

Publication number
JP2013527848A5
JP2013527848A5 JP2013508222A JP2013508222A JP2013527848A5 JP 2013527848 A5 JP2013527848 A5 JP 2013527848A5 JP 2013508222 A JP2013508222 A JP 2013508222A JP 2013508222 A JP2013508222 A JP 2013508222A JP 2013527848 A5 JP2013527848 A5 JP 2013527848A5
Authority
JP
Japan
Prior art keywords
spot
substrate
field
spots
biochemical
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2013508222A
Other languages
English (en)
Japanese (ja)
Other versions
JP5654668B2 (ja
JP2013527848A (ja
Filing date
Publication date
Priority claimed from US13/092,618 external-priority patent/US8774494B2/en
Application filed filed Critical
Publication of JP2013527848A publication Critical patent/JP2013527848A/ja
Publication of JP2013527848A5 publication Critical patent/JP2013527848A5/ja
Application granted granted Critical
Publication of JP5654668B2 publication Critical patent/JP5654668B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2013508222A 2010-04-30 2011-04-27 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及びシステム Active JP5654668B2 (ja)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US33013010P 2010-04-30 2010-04-30
US61/330,130 2010-04-30
US13/092,618 US8774494B2 (en) 2010-04-30 2011-04-22 Method and system for accurate alignment and registration of array for DNA sequencing
US13/092,618 2011-04-22
PCT/US2011/034178 WO2011137183A1 (en) 2010-04-30 2011-04-27 Method and system for accurate alignment and registration of array for dna sequencing

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2014235627A Division JP6042859B2 (ja) 2010-04-30 2014-11-20 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置

Publications (3)

Publication Number Publication Date
JP2013527848A JP2013527848A (ja) 2013-07-04
JP2013527848A5 true JP2013527848A5 (enExample) 2014-07-17
JP5654668B2 JP5654668B2 (ja) 2015-01-14

Family

ID=44858300

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2013508222A Active JP5654668B2 (ja) 2010-04-30 2011-04-27 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及びシステム
JP2014235627A Active JP6042859B2 (ja) 2010-04-30 2014-11-20 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置

Family Applications After (1)

Application Number Title Priority Date Filing Date
JP2014235627A Active JP6042859B2 (ja) 2010-04-30 2014-11-20 Ｄｎａシークエンシング用アレイの正確なアラインメント及びレジストレーションのための方法及び装置

Country Status (6)

Country Link
US (2) US8774494B2 (enExample)
EP (2) EP2563953A4 (enExample)
JP (2) JP5654668B2 (enExample)
CN (1) CN103025927B (enExample)
SG (1) SG184963A1 (enExample)
WO (1) WO2011137183A1 (enExample)

Families Citing this family (45)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101910399B (zh) 2007-10-30 2015-11-25 考利达基因组股份有限公司 用于核酸高通量测序的装置
US8774494B2 (en) 2010-04-30 2014-07-08 Complete Genomics, Inc. Method and system for accurate alignment and registration of array for DNA sequencing
US9880089B2 (en) 2010-08-31 2018-01-30 Complete Genomics, Inc. High-density devices with synchronous tracks for quad-cell based alignment correction
US9671344B2 (en) 2010-08-31 2017-06-06 Complete Genomics, Inc. High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging
KR102003660B1 (ko) 2011-07-13 2019-07-24 더 멀티플 마이얼로머 리서치 파운데이션, 인크. 데이터 수집 및 분배 방법
US9135497B2 (en) * 2012-01-27 2015-09-15 National Instruments Corporation Identifying randomly distributed microparticles in images to sequence a polynucleotide
EP2807272A1 (en) 2012-01-27 2014-12-03 Ventana Medical Systems, Inc. Devices and methods for detecting bio-analytes using optically decipherable patterns
US10829816B2 (en) 2012-11-19 2020-11-10 Apton Biosystems, Inc. Methods of analyte detection
DK2920725T3 (da) 2012-11-19 2022-02-07 Apton Biosystems Inc Digital analyse af molekylære analytter ved hjælp af enkeltmolekyledetektering
US9146248B2 (en) 2013-03-14 2015-09-29 Intelligent Bio-Systems, Inc. Apparatus and methods for purging flow cells in nucleic acid sequencing instruments
US9591268B2 (en) 2013-03-15 2017-03-07 Qiagen Waltham, Inc. Flow cell alignment methods and systems
US9898820B2 (en) * 2013-03-18 2018-02-20 Life Technologies Corporation Methods and systems for analyzing biological reaction systems
US10088658B2 (en) * 2013-03-18 2018-10-02 General Electric Company Referencing in multi-acquisition slide imaging
RU2016106961A (ru) 2013-08-22 2017-09-27 Аптон Биосистемс, Инк. Цифровой анализ молекулярных анализируемых веществ с помощью электрических способов
US9519823B2 (en) * 2013-10-04 2016-12-13 The University Of Manchester Biomarker method
US9953417B2 (en) 2013-10-04 2018-04-24 The University Of Manchester Biomarker method
CN107735496B (zh) * 2014-12-26 2021-05-07 株式会社日立高新技术 核酸分析装置
JP2016174578A (ja) * 2015-03-20 2016-10-06 東ソー株式会社 微小粒子選別装置および前記装置を備えた微小粒子回収装置
US9330932B1 (en) * 2015-03-31 2016-05-03 Micron Technology, Inc. Methods of fabricating features associated with semiconductor substrates
EP3387617B1 (en) * 2015-12-10 2020-05-27 Qiagen GmbH Method for determining the overall brightness of at least one object in a digital image
JP6672938B2 (ja) * 2016-03-25 2020-03-25 横浜ゴム株式会社 周波数選択板の設計方法および周波数選択板設計プログラム
US10467749B2 (en) * 2016-10-10 2019-11-05 Genemind Biosciences Company Limited Method and system for processing an image comprising spots in nucleic acid sequencing
DK3548652T3 (da) * 2016-12-01 2024-07-08 Nautilus Subsidiary Inc Fremgangsmåder til proteinanalyse
CN110650794B (zh) 2017-03-17 2022-04-29 雅普顿生物系统公司 测序和高分辨率成像
MX389484B (es) 2017-11-13 2025-03-20 The Multiple Myeloma Res Foundation Inc Base de datos, de datos moleculares, omicos, de inmunoterapia, metabolicos, epigeneticos y clinicos, integrados
JP7062926B2 (ja) * 2017-11-24 2022-05-09 凸版印刷株式会社 呈色反応検出システム、呈色反応検出方法及びプログラム
IL326759A (en) 2017-12-29 2026-04-01 Nautilus Subsidiary Inc Decoding approaches for protein identification
RU2749893C1 (ru) 2018-04-10 2021-06-18 ЭмДжиАй ТЕК КО., ЛТД. Способ совмещения изображений флуоресценции, прибор и система секвенирования генов и запоминающая среда
US11435283B2 (en) 2018-04-17 2022-09-06 Sharif University Of Technology Optically detecting mutations in a sequence of DNA
CN109035164B (zh) * 2018-07-13 2022-03-04 北京控制工程研究所 一种快速鲁棒图像杂光抑制的方法及系统
WO2020037570A1 (zh) * 2018-08-22 2020-02-27 深圳市真迈生物科技有限公司 图像配准方法、装置和计算机程序产品
KR20260023102A (ko) 2018-09-19 2026-02-20 퍼시픽 바이오사이언스 오브 캘리포니아, 인크. 밀집 패킹된 분석물층 및 검출 방법
JPWO2020145124A1 (ja) * 2019-01-09 2021-10-07 株式会社日立ハイテク 核酸分析用基板、核酸分析用フローセル、及び画像解析方法
US11972583B2 (en) * 2019-01-31 2024-04-30 Bgi Shenzhen Fluorescence image registration method, gene sequencing instrument, and storage medium
CN117036248A (zh) 2019-10-01 2023-11-10 10X基因组学有限公司 用于识别组织样品中的形态学模式的系统和方法
CA3158603A1 (en) 2019-11-18 2021-05-27 Neil Ira WEISENFELD Systems and methods for tissue classification
WO2021102005A1 (en) 2019-11-22 2021-05-27 10X Genomics, Inc. Systems and methods for spatial analysis of analytes using fiducial alignment
US12421558B2 (en) 2020-02-13 2025-09-23 10X Genomics, Inc. Systems and methods for joint interactive visualization of gene expression and DNA chromatin accessibility
CN111407222B (zh) * 2020-04-27 2024-11-29 重庆金山医疗技术研究院有限公司 一种电子内窥镜传像组件景深调试装置及调试方法
EP4053794A1 (en) * 2021-03-05 2022-09-07 Leica Microsystems CMS GmbH Multispectral microscope system and method for registering first and second images by means thereof
WO2022271689A1 (en) * 2021-06-25 2022-12-29 Illumina, Inc. Fiducials for use in registration of a patterned surface
EP4181077A1 (en) * 2021-11-11 2023-05-17 Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. Method of evaluating at least one image of at least one micro-array
FR3133474B1 (fr) * 2022-03-11 2024-03-22 Aryballe Dispositif et procédé de caractérisation d’un alignement de caméra dans un capteur à puce photonique
EP4435717A1 (en) * 2023-03-24 2024-09-25 QIAGEN GmbH Method for providing an analysis of partition image data
CN119913026B (zh) * 2023-10-30 2025-12-02 迈克医疗电子有限公司 数字pcr仪及其通道微滴对齐方法

Family Cites Families (55)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4965188A (en) 1986-08-22 1990-10-23 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme
US4800159A (en) 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
US6610256B2 (en) 1989-04-05 2003-08-26 Wisconsin Alumni Research Foundation Image processing and analysis of individual nucleic acid molecules
CA2020958C (en) 1989-07-11 2005-01-11 Daniel L. Kacian Nucleic acid sequence amplification methods
US5210015A (en) 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
US6401267B1 (en) 1993-09-27 2002-06-11 Radoje Drmanac Methods and compositions for efficient nucleic acid sequencing
US5854033A (en) 1995-11-21 1998-12-29 Yale University Rolling circle replication reporter systems
ATE428801T1 (de) 1996-06-04 2009-05-15 Univ Utah Res Found Überwachung der hybridisierung während pcr
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
US6309824B1 (en) 1997-01-16 2001-10-30 Hyseq, Inc. Methods for analyzing a target nucleic acid using immobilized heterogeneous mixtures of oligonucleotide probes
CA2305449A1 (en) 1997-10-10 1999-04-22 President & Fellows Of Harvard College Replica amplification of nucleic acid arrays
US6349144B1 (en) * 1998-02-07 2002-02-19 Biodiscovery, Inc. Automated DNA array segmentation and analysis
CA2342838A1 (en) 1998-09-15 2000-03-23 Yale University Molecular cloning using rolling circle amplification
AU2496900A (en) 1999-01-06 2000-07-24 Hyseq, Inc. Enhanced sequencing by hybridization using pools of probes
GB9901475D0 (en) 1999-01-22 1999-03-17 Pyrosequencing Ab A method of DNA sequencing
US20020150909A1 (en) * 1999-02-09 2002-10-17 Stuelpnagel John R. Automated information processing in randomly ordered arrays
US6272207B1 (en) 1999-02-18 2001-08-07 Creatv Microtech, Inc. Method and apparatus for obtaining high-resolution digital X-ray and gamma ray images
US6544732B1 (en) 1999-05-20 2003-04-08 Illumina, Inc. Encoding and decoding of array sensors utilizing nanocrystals
WO2000071992A1 (en) 1999-05-20 2000-11-30 Illumina, Inc. Method and apparatus for retaining and presenting at least one microsphere array to solutions and/or to optical imaging systems
US6818395B1 (en) 1999-06-28 2004-11-16 California Institute Of Technology Methods and apparatus for analyzing polynucleotide sequences
US6754375B1 (en) 1999-07-16 2004-06-22 Packard Bioscience Company Method and system for interactively developing at least one grid pattern and computer-readable storage medium having a program for executing the method
WO2001023610A2 (en) 1999-09-29 2001-04-05 Solexa Ltd. Polynucleotide sequencing
US6770441B2 (en) 2000-02-10 2004-08-03 Illumina, Inc. Array compositions and methods of making same
DE60124598T2 (de) * 2000-06-06 2007-09-06 Agilent Technologies, Inc., Palo Alto Verfahren und System zur Bestimmung der Orientierung eines Microarrays
US6591196B1 (en) * 2000-06-06 2003-07-08 Agilent Technologies Inc. Method and system for extracting data from surface array deposited features
US7440637B2 (en) * 2000-07-21 2008-10-21 The Trustees Of Columbia University In The City Of New York Method and apparatus for image mosaicing
EP1573634A2 (en) * 2000-08-22 2005-09-14 Affymetrix, Inc. System method, and computer software product for controlling biological microarray scanner
US6873422B2 (en) * 2000-12-08 2005-03-29 Mitutoyo Corporation Systems and methods for high-accuracy displacement determination in a correlation based position transducer
US20020192650A1 (en) * 2001-05-30 2002-12-19 Amorese Douglas A. Composite arrays
US7157229B2 (en) 2002-01-31 2007-01-02 Nimblegen Systems, Inc. Prepatterned substrate for optical synthesis of DNA probes
US6982793B1 (en) 2002-04-04 2006-01-03 Nanometrics Incorporated Method and apparatus for using an alignment target with designed in offset
US6980677B2 (en) * 2002-05-24 2005-12-27 Niles Scientific, Inc. Method, system, and computer code for finding spots defined in biological microarrays
US20050049797A1 (en) 2003-08-27 2005-03-03 Srinka Ghosh Method and system for displacement-vector-based detection of zone misalignment in microarray data
US7323681B1 (en) * 2003-09-11 2008-01-29 Applera Corporation Image enhancement by sub-pixel imaging
AU2005216549A1 (en) 2004-02-27 2005-09-09 President And Fellows Of Harvard College Polony fluorescent in situ sequencing beads
US7072500B2 (en) 2004-05-07 2006-07-04 Wisconsin Alumni Research Foundation Image locking system for DNA micro-array synthesis
US20060024711A1 (en) 2004-07-02 2006-02-02 Helicos Biosciences Corporation Methods for nucleic acid amplification and sequence determination
WO2006073504A2 (en) 2004-08-04 2006-07-13 President And Fellows Of Harvard College Wobble sequencing
US7283677B2 (en) * 2004-08-31 2007-10-16 Hewlett-Packard Development Company, L.P. Measuring sub-wavelength displacements
AU2006259565B2 (en) * 2005-06-15 2011-01-06 Complete Genomics, Inc. Single molecule arrays for genetic and chemical analysis
SG170028A1 (en) 2006-02-24 2011-04-29 Callida Genomics Inc High throughput genome sequencing on dna arrays
US20090111706A1 (en) * 2006-11-09 2009-04-30 Complete Genomics, Inc. Selection of dna adaptor orientation by amplification
CA2685714C (en) * 2007-05-31 2016-04-12 University Of Washington Inducible mutagenesis of target genes
US8298768B2 (en) 2007-11-29 2012-10-30 Complete Genomics, Inc. Efficient shotgun sequencing methods
US8617811B2 (en) * 2008-01-28 2013-12-31 Complete Genomics, Inc. Methods and compositions for efficient base calling in sequencing reactions
CN101910399B (zh) 2007-10-30 2015-11-25 考利达基因组股份有限公司 用于核酸高通量测序的装置
JP5835680B2 (ja) * 2007-11-05 2015-12-24 株式会社東芝 画像位置合わせ装置
WO2009123767A1 (en) * 2008-04-04 2009-10-08 Life Technologies Corporation Scanning system and method for imaging and sequencing
CN102138160B (zh) * 2008-07-15 2014-06-04 韩国巴斯德研究所 用于成像基底上的特征的方法和装置
US8774494B2 (en) 2010-04-30 2014-07-08 Complete Genomics, Inc. Method and system for accurate alignment and registration of array for DNA sequencing
US9671344B2 (en) * 2010-08-31 2017-06-06 Complete Genomics, Inc. High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging
US9880089B2 (en) 2010-08-31 2018-01-30 Complete Genomics, Inc. High-density devices with synchronous tracks for quad-cell based alignment correction
US8175452B1 (en) 2010-10-26 2012-05-08 Complete Genomics, Inc. Method and system for imaging high density biochemical arrays with sub-pixel alignment

Similar Documents

Publication Publication Date Title
CN103025927B (zh) 精确地比对与配准用于dna测序的阵列的方法及系统
ATE527633T1 (de) Verfahren zum finden des korrelationsmaximums zum feststellen einer verschiebung durch bildkorrelation
GB2556824A (en) Camera calibration using synthetic images
ATE477558T1 (de) Auf merkmalen basierende registrierung von schnittbildern
JP2013185832A5 (enExample)
MX2021013907A (es) Matriz y método para la detección de información espacial de ácidos nucleicos.
JP2014203038A5 (enExample)
EP2472302A3 (de) Verfahren zur Korrektur von Bildverzeichnungen bei einem konfokalen Scan-Mikroskop
JP2012132749A5 (enExample)
JP2015231362A5 (enExample)
JP2015038985A5 (enExample)
WO2018060523A3 (en) Computer device for detecting an optimal candidate compound and methods thereof
WO2007089921A3 (en) Image analysis
WO2009132655A3 (en) Design and use of sortilin specific molecular imaging ligands
JP2011085578A5 (enExample)
TW201231914A (en) Surface shape evaluating method and surface shape evaluating device
CN110288564B (zh) 基于功率谱分析的二值化散斑质量评价方法
ES2498790A1 (es) Procedimiento para la detección magneto-electroquímica sin lavados de un analito en una muestra
Ghorbani et al. Comparison of Whittaker and Modified-Whittaker plots to estimate species richness in semi-arid grassland and shrubland
Gutierrez-Padilla et al. Simple scanner-based image analysis for corrosion testing: Concrete application
DE502006001277D1 (de) Verfahren zum bestimmen des genauen mittelpunktes einer in einen münzprüfer eingegebenen münze
MX374318B (es) Dispositivo de procesamiento de información, sistema, método de procesamiento de la información y medio de almacenamiento.
WO2010054625A3 (de) Verfahren und vorrichtung zum feststellen von lage, radius und/oder formabweichung einer ringartigen struktur
Yang et al. Image Analysis Method for Observing Crack, Strain and Displacement Fields in RC Structural Experiments
Lee et al. Evaluation methods to verify the improvements in measuring soil physical properties by new fusion device using geostatistical analysis