JP2011505812A5 - - Google Patents
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- JP2011505812A5 JP2011505812A5 JP2010537317A JP2010537317A JP2011505812A5 JP 2011505812 A5 JP2011505812 A5 JP 2011505812A5 JP 2010537317 A JP2010537317 A JP 2010537317A JP 2010537317 A JP2010537317 A JP 2010537317A JP 2011505812 A5 JP2011505812 A5 JP 2011505812A5
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- JP
- Japan
- Prior art keywords
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- stringent conditions
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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- 238000000034 method Methods 0.000 claims 15
- 230000003321 amplification Effects 0.000 claims 9
- 238000003199 nucleic acid amplification method Methods 0.000 claims 9
- 230000000295 complement effect Effects 0.000 claims 8
- 108020004414 DNA Proteins 0.000 claims 7
- 210000004027 cell Anatomy 0.000 claims 6
- 230000011987 methylation Effects 0.000 claims 6
- 238000007069 methylation reaction Methods 0.000 claims 6
- 108020004707 nucleic acids Proteins 0.000 claims 6
- 150000007523 nucleic acids Chemical class 0.000 claims 6
- 102000039446 nucleic acids Human genes 0.000 claims 6
- 239000002773 nucleotide Substances 0.000 claims 6
- 125000003729 nucleotide group Chemical group 0.000 claims 6
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims 5
- 239000012634 fragment Substances 0.000 claims 5
- LSNNMFCWUKXFEE-UHFFFAOYSA-M Bisulfite Chemical compound OS([O-])=O LSNNMFCWUKXFEE-UHFFFAOYSA-M 0.000 claims 4
- 239000012472 biological sample Substances 0.000 claims 4
- 239000003153 chemical reaction reagent Substances 0.000 claims 4
- 208000035475 disorder Diseases 0.000 claims 4
- 230000002062 proliferating effect Effects 0.000 claims 4
- 108091029430 CpG site Proteins 0.000 claims 3
- 206010058467 Lung neoplasm malignant Diseases 0.000 claims 3
- 108091028043 Nucleic acid sequence Proteins 0.000 claims 3
- 108091034117 Oligonucleotide Proteins 0.000 claims 3
- 108091093037 Peptide nucleic acid Proteins 0.000 claims 3
- 201000005202 lung cancer Diseases 0.000 claims 3
- 208000020816 lung neoplasm Diseases 0.000 claims 3
- 108090000790 Enzymes Proteins 0.000 claims 2
- 102000004190 Enzymes Human genes 0.000 claims 2
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 claims 2
- 210000004369 blood Anatomy 0.000 claims 2
- 239000008280 blood Substances 0.000 claims 2
- 238000001514 detection method Methods 0.000 claims 2
- 108010076804 DNA Restriction Enzymes Proteins 0.000 claims 1
- 206010061818 Disease progression Diseases 0.000 claims 1
- BFNBIHQBYMNNAN-UHFFFAOYSA-N ammonium sulfate Chemical compound N.N.OS(O)(=O)=O BFNBIHQBYMNNAN-UHFFFAOYSA-N 0.000 claims 1
- 229910052921 ammonium sulfate Inorganic materials 0.000 claims 1
- 235000011130 ammonium sulphate Nutrition 0.000 claims 1
- 238000001574 biopsy Methods 0.000 claims 1
- 210000000601 blood cell Anatomy 0.000 claims 1
- 210000001124 body fluid Anatomy 0.000 claims 1
- 239000010839 body fluid Substances 0.000 claims 1
- 230000009702 cancer cell proliferation Effects 0.000 claims 1
- 208000035269 cancer or benign tumor Diseases 0.000 claims 1
- 238000012512 characterization method Methods 0.000 claims 1
- 238000003745 diagnosis Methods 0.000 claims 1
- ZZTURJAZCMUWEP-UHFFFAOYSA-N diaminomethylideneazanium;hydrogen sulfate Chemical compound NC(N)=N.OS(O)(=O)=O ZZTURJAZCMUWEP-UHFFFAOYSA-N 0.000 claims 1
- 201000010099 disease Diseases 0.000 claims 1
- 230000005750 disease progression Effects 0.000 claims 1
- 238000009396 hybridization Methods 0.000 claims 1
- 229940079826 hydrogen sulfite Drugs 0.000 claims 1
- 230000006607 hypermethylation Effects 0.000 claims 1
- 210000002381 plasma Anatomy 0.000 claims 1
- 230000001105 regulatory effect Effects 0.000 claims 1
- 108091008146 restriction endonucleases Proteins 0.000 claims 1
- 238000012163 sequencing technique Methods 0.000 claims 1
- 210000002966 serum Anatomy 0.000 claims 1
- 210000001519 tissue Anatomy 0.000 claims 1
- 210000002700 urine Anatomy 0.000 claims 1
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP07122844.9 | 2007-12-11 | ||
| EP07122844 | 2007-12-11 | ||
| EP08150557.0 | 2008-01-23 | ||
| EP08150557 | 2008-01-23 | ||
| PCT/EP2008/010549 WO2009074328A2 (en) | 2007-12-11 | 2008-12-11 | Methods and nucleic acids for analyses of lung carcinoma |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2011505812A JP2011505812A (ja) | 2011-03-03 |
| JP2011505812A5 true JP2011505812A5 (enExample) | 2013-01-24 |
| JP5694776B2 JP5694776B2 (ja) | 2015-04-01 |
Family
ID=40362005
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2010537317A Expired - Fee Related JP5694776B2 (ja) | 2007-12-11 | 2008-12-11 | 細胞増殖性障害の解析のための方法及び核酸 |
Country Status (6)
| Country | Link |
|---|---|
| US (3) | US20110003292A1 (enExample) |
| EP (2) | EP2302069A1 (enExample) |
| JP (1) | JP5694776B2 (enExample) |
| AU (1) | AU2008334901A1 (enExample) |
| CA (1) | CA2708163A1 (enExample) |
| WO (1) | WO2009074328A2 (enExample) |
Families Citing this family (12)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20110171637A1 (en) * | 2006-07-21 | 2011-07-14 | Reimo Tetzner | Methods and nucleic acids for analyses of cellular proliferative disorders |
| EP3184649A1 (en) | 2006-11-24 | 2017-06-28 | Epigenomics AG | Methods and nucleic acids for the analysis of gene expression associated with the development of prostate cell proliferative disorders |
| GB0823445D0 (en) * | 2008-12-23 | 2009-01-28 | Univ Surrey | Biomarker |
| GB0912175D0 (en) * | 2009-07-13 | 2009-08-26 | Univ Surrey | Biomarker |
| GB0912190D0 (en) * | 2009-07-13 | 2009-08-26 | Univ Surrey | Biomarker |
| US20120157324A1 (en) * | 2009-08-17 | 2012-06-21 | Yale University | Methylation biomarkers and methods of use |
| US20110104695A1 (en) * | 2009-11-05 | 2011-05-05 | Epigenomics Ag | Methods of predicting therapeutic efficacy of cancer therapy |
| CA3111723A1 (en) * | 2012-01-30 | 2013-08-08 | Exact Sciences Development Company, Llc | Sulfonated small dna compositions and methods for sulfonating and desulfonating small dnas |
| EP2914753A4 (en) * | 2012-10-31 | 2016-06-08 | Becton Dickinson Co | SELECTIVE AMPLIFICATION AND REAL-TIME PCR DETECTION OF RARE MUTATIONS |
| JP2014161308A (ja) * | 2013-02-27 | 2014-09-08 | St Marianna Univ School Of Medicine | 胃癌の検出又は胃癌発症のリスク評価のための指標を得る方法 |
| CA3022911A1 (en) * | 2016-05-05 | 2017-11-09 | Exact Sciences Development Company, Llc | Detection of lung neoplasia by analysis of methylated dna |
| US20220228217A1 (en) * | 2019-05-29 | 2022-07-21 | Hkg Epitherapeutics Limited | Epiaging ; novel ecosystem for managing healthy aging |
Family Cites Families (35)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5585481A (en) | 1987-09-21 | 1996-12-17 | Gen-Probe Incorporated | Linking reagents for nucleotide probes |
| US5457183A (en) | 1989-03-06 | 1995-10-10 | Board Of Regents, The University Of Texas System | Hydroxylated texaphyrins |
| US5245022A (en) | 1990-08-03 | 1993-09-14 | Sterling Drug, Inc. | Exonuclease resistant terminally substituted oligonucleotides |
| US5565552A (en) | 1992-01-21 | 1996-10-15 | Pharmacyclics, Inc. | Method of expanded porphyrin-oligonucleotide conjugate synthesis |
| US5574142A (en) | 1992-12-15 | 1996-11-12 | Microprobe Corporation | Peptide linkers for improved oligonucleotide delivery |
| SE501439C2 (sv) | 1993-06-22 | 1995-02-13 | Pharmacia Lkb Biotech | Sätt och anordning för analys av polynukleotidsekvenser |
| KR100392057B1 (ko) | 1993-11-30 | 2003-10-30 | 맥길 유니버시티 | 세포의 CpG 디뉴클레오티드 내의 시토신의 메틸화를 감소하는 방법 |
| US5597696A (en) | 1994-07-18 | 1997-01-28 | Becton Dickinson And Company | Covalent cyanine dye oligonucleotide conjugates |
| US5514758A (en) | 1994-09-30 | 1996-05-07 | The Goodyear Tire & Rubber Company | Process for making latex for high performance masking tape |
| US5786146A (en) | 1996-06-03 | 1998-07-28 | The Johns Hopkins University School Of Medicine | Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids |
| US6017704A (en) | 1996-06-03 | 2000-01-25 | The Johns Hopkins University School Of Medicine | Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids |
| US5912264A (en) | 1997-03-03 | 1999-06-15 | Bristol-Myers Squibb Company | 6-halo-or nitrate-substituted paclitaxels |
| US6251594B1 (en) | 1997-06-09 | 2001-06-26 | Usc/Norris Comprehensive Cancer Ctr. | Cancer diagnostic method based upon DNA methylation differences |
| DE19754482A1 (de) | 1997-11-27 | 1999-07-01 | Epigenomics Gmbh | Verfahren zur Herstellung komplexer DNA-Methylierungs-Fingerabdrücke |
| US7700324B1 (en) | 1998-11-03 | 2010-04-20 | The Johns Hopkins University School Of Medicine | Methylated CpG island amplification (MCA) |
| US5958773A (en) | 1998-12-17 | 1999-09-28 | Isis Pharmaceuticals Inc. | Antisense modulation of AKT-1 expression |
| US6331393B1 (en) | 1999-05-14 | 2001-12-18 | University Of Southern California | Process for high-throughput DNA methylation analysis |
| WO2002018631A2 (de) * | 2000-09-01 | 2002-03-07 | Epigenomics Ag | Diagnose von bestehenden erkrankungen oder der prädisposition für bestimmte erkrankungen |
| US20050235375A1 (en) * | 2001-06-22 | 2005-10-20 | Wenqiong Chen | Transcription factors of cereals |
| US7473767B2 (en) | 2001-07-03 | 2009-01-06 | The Institute For Systems Biology | Methods for detection and quantification of analytes in complex mixtures |
| DE10338308B4 (de) | 2003-08-15 | 2006-10-19 | Epigenomics Ag | Verfahren zum Nachweis von Cytosin-Methylierungen in DNA |
| EP2281902A1 (en) * | 2004-07-18 | 2011-02-09 | Epigenomics AG | Epigenetic methods and nucleic acids for the detection of breast cell proliferative disorders |
| CA2589782A1 (en) * | 2004-11-30 | 2006-06-08 | Veridex Llc | Lung cancer prognostics |
| JP5745202B2 (ja) * | 2004-12-02 | 2015-07-08 | エピゲノミックス アクチェンゲゼルシャフト | 前立腺細胞増殖障害の予後に関連する遺伝子発現分析のための方法および核酸 |
| KR20080011287A (ko) * | 2005-04-15 | 2008-02-01 | 에피제노믹스 아게 | 세포 증식 질환을 분석하기 위한 방법 및 핵산 |
| ES2406943T3 (es) * | 2005-05-27 | 2013-06-10 | Dana-Farber Cancer Institute, Inc. | Metilación y expresión génicas |
| EP1991274A4 (en) * | 2006-01-20 | 2009-06-10 | Women S And Children S Health | METHOD OF TREATMENT, PROPHYLAXIS AND DIAGNOSIS OF BONE PATHOLOGIES |
| WO2007085497A2 (en) * | 2006-01-30 | 2007-08-02 | Epigenomics Ag | Markers for the prediction of outcome of anthracycline treatment |
| DK1826279T3 (da) * | 2006-02-28 | 2011-09-05 | Charite Universitaetsmedizin | Detektering og kvalitetskontrol af regulatoriske t-celler vha. DNA-metyleringsanalyse af FoxP3--genet |
| US20080085867A1 (en) * | 2006-07-14 | 2008-04-10 | The Johns Hopkins University | Early detection and prognosis of colon cancers |
| DK2258871T3 (da) * | 2007-01-19 | 2014-08-11 | Epigenomics Ag | Fremgangsmåder og nukleinsyrer til analyse af celleproliferative lidelser |
| US20090203011A1 (en) * | 2007-01-19 | 2009-08-13 | Epigenomics Ag | Methods and nucleic acids for analyses of cell proliferative disorders |
| CA2676227A1 (en) * | 2007-02-12 | 2008-08-21 | The Johns Hopkins University | Early detection and prognosis of colon cancers |
| JP2008212009A (ja) * | 2007-02-28 | 2008-09-18 | Sysmex Corp | Ｄｎａメチル化検出用試料の調製方法 |
| AU2011207408A1 (en) * | 2010-01-22 | 2012-07-26 | Chromatin, Inc. | Novel centromeres and methods of using the same |
-
2008
- 2008-12-11 AU AU2008334901A patent/AU2008334901A1/en not_active Abandoned
- 2008-12-11 WO PCT/EP2008/010549 patent/WO2009074328A2/en not_active Ceased
- 2008-12-11 EP EP10008955A patent/EP2302069A1/en not_active Withdrawn
- 2008-12-11 JP JP2010537317A patent/JP5694776B2/ja not_active Expired - Fee Related
- 2008-12-11 EP EP08860719A patent/EP2229456A2/en not_active Withdrawn
- 2008-12-11 CA CA2708163A patent/CA2708163A1/en not_active Abandoned
- 2008-12-11 US US12/747,584 patent/US20110003292A1/en not_active Abandoned
-
2015
- 2015-12-22 US US14/978,642 patent/US20160194722A1/en not_active Abandoned
-
2017
- 2017-08-09 US US15/672,858 patent/US20180023144A1/en not_active Abandoned
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