JP2010535480A5 - - Google Patents
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- Publication number
- JP2010535480A5 JP2010535480A5 JP2010519376A JP2010519376A JP2010535480A5 JP 2010535480 A5 JP2010535480 A5 JP 2010535480A5 JP 2010519376 A JP2010519376 A JP 2010519376A JP 2010519376 A JP2010519376 A JP 2010519376A JP 2010535480 A5 JP2010535480 A5 JP 2010535480A5
- Authority
- JP
- Japan
- Prior art keywords
- sequence
- target sequence
- blocker oligonucleotide
- oligonucleotide
- nucleotide
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 108091034117 Oligonucleotide Proteins 0.000 claims 24
- 239000002773 nucleotide Substances 0.000 claims 14
- 125000003729 nucleotide group Chemical group 0.000 claims 14
- 238000000034 method Methods 0.000 claims 8
- 230000003321 amplification Effects 0.000 claims 7
- 238000003199 nucleic acid amplification method Methods 0.000 claims 7
- 108091033319 polynucleotide Proteins 0.000 claims 7
- 239000002157 polynucleotide Substances 0.000 claims 7
- 102000040430 polynucleotide Human genes 0.000 claims 7
- PEDCQBHIVMGVHV-UHFFFAOYSA-N Glycerine Chemical compound OCC(O)CO PEDCQBHIVMGVHV-UHFFFAOYSA-N 0.000 claims 6
- SEQKRHFRPICQDD-UHFFFAOYSA-N N-tris(hydroxymethyl)methylglycine Chemical compound OCC(CO)(CO)[NH2+]CC([O-])=O SEQKRHFRPICQDD-UHFFFAOYSA-N 0.000 claims 4
- 230000000694 effects Effects 0.000 claims 4
- 238000009396 hybridization Methods 0.000 claims 4
- 238000002844 melting Methods 0.000 claims 4
- 230000008018 melting Effects 0.000 claims 4
- SCVFZCLFOSHCOH-UHFFFAOYSA-M potassium acetate Chemical compound [K+].CC([O-])=O SCVFZCLFOSHCOH-UHFFFAOYSA-M 0.000 claims 4
- 108060002716 Exonuclease Proteins 0.000 claims 3
- 102000013165 exonuclease Human genes 0.000 claims 3
- 239000000523 sample Substances 0.000 claims 3
- UZMAPBJVXOGOFT-UHFFFAOYSA-N Syringetin Natural products COC1=C(O)C(OC)=CC(C2=C(C(=O)C3=C(O)C=C(O)C=C3O2)O)=C1 UZMAPBJVXOGOFT-UHFFFAOYSA-N 0.000 claims 2
- 239000007997 Tricine buffer Substances 0.000 claims 2
- 230000000295 complement effect Effects 0.000 claims 2
- KCFYHBSOLOXZIF-UHFFFAOYSA-N dihydrochrysin Natural products COC1=C(O)C(OC)=CC(C2OC3=CC(O)=CC(O)=C3C(=O)C2)=C1 KCFYHBSOLOXZIF-UHFFFAOYSA-N 0.000 claims 2
- 238000009830 intercalation Methods 0.000 claims 2
- 235000011056 potassium acetate Nutrition 0.000 claims 2
- 239000011541 reaction mixture Substances 0.000 claims 2
- 101710163270 Nuclease Proteins 0.000 claims 1
- 239000012472 biological sample Substances 0.000 claims 1
- 230000001419 dependent effect Effects 0.000 claims 1
- 238000011144 upstream manufacturing Methods 0.000 claims 1
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US96408907P | 2007-08-08 | 2007-08-08 | |
| US60/964,089 | 2007-08-08 | ||
| PCT/EP2008/006476 WO2009019008A1 (en) | 2007-08-08 | 2008-08-07 | Suppression of amplification using an oligonucleotide and a polymerase significantly lacking 5'-3' exonuclease activity |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2010535480A JP2010535480A (ja) | 2010-11-25 |
| JP2010535480A5 true JP2010535480A5 (show.php) | 2011-06-23 |
| JP5524838B2 JP5524838B2 (ja) | 2014-06-18 |
Family
ID=39942715
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2010519376A Expired - Fee Related JP5524838B2 (ja) | 2007-08-08 | 2008-08-07 | オリゴヌクレオチド、及び５’−３’エキソヌクレアーゼ活性を著しく欠如するポリメラーゼを使用する、増幅の抑制 |
Country Status (7)
| Country | Link |
|---|---|
| US (1) | US8071338B2 (show.php) |
| EP (1) | EP2173910B1 (show.php) |
| JP (1) | JP5524838B2 (show.php) |
| CN (1) | CN101778952B (show.php) |
| CA (1) | CA2693384C (show.php) |
| ES (1) | ES2562789T3 (show.php) |
| WO (1) | WO2009019008A1 (show.php) |
Families Citing this family (35)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US8455190B2 (en) | 2007-08-01 | 2013-06-04 | Dana-Farber Cancer Institute, Inc. | Enrichment of a target sequence |
| US8206929B2 (en) * | 2009-01-07 | 2012-06-26 | Roche Molecular Systems, Inc. | Nucleic acid amplification with allele-specific suppression of sequence variants |
| WO2011056687A2 (en) | 2009-10-27 | 2011-05-12 | Swift Biosciences, Inc. | Polynucleotide primers and probes |
| ES2665500T3 (es) * | 2010-03-08 | 2018-04-26 | Dana-Farber Cancer Institute, Inc. | Enriquecimiento de una PCR por COLD completa con secuencia de bloqueo de referencia |
| KR101851382B1 (ko) * | 2010-09-10 | 2018-04-23 | 가부시키가이샤 엘에스아이 메디엔스 | 광을 이용한 핵산의 증폭 억제 방법 및 고감도의 선택적 핵산 증폭 방법 |
| US9284602B2 (en) | 2010-10-27 | 2016-03-15 | President And Fellows Of Harvard College | Compositions of toehold primer duplexes and methods of use |
| CA2828535A1 (en) * | 2011-02-28 | 2012-09-07 | Transgenomic, Inc. | Kit and method for sequencing a target dna in a mixed population |
| WO2012135664A2 (en) * | 2011-03-31 | 2012-10-04 | Dana-Farber Cancer Institute, Inc. | Methods and compositions to enable multiplex cold-pcr |
| US9796748B2 (en) | 2011-05-02 | 2017-10-24 | President And Fellows Of Harvard College | Spatial sequestration of dynamic nucleic acid circuits |
| EP3382039B1 (en) * | 2011-05-04 | 2023-09-13 | Biocept, Inc. | Methods for detecting nucleic acid sequence variants |
| US9518292B2 (en) | 2011-05-26 | 2016-12-13 | Brandeis University | Methods for suppression PCR |
| EP2758458A4 (en) | 2011-07-10 | 2015-10-21 | Harvard College | COMPOSITIONS AND METHODS FOR SELF-ASSEMBLING POLYMERS WITH COMPLEMENTARY MACROSCOPIC AND MICROSCOPIC SCALE UNITS |
| EP3263718A1 (en) | 2011-09-16 | 2018-01-03 | Lexogen GmbH | Nucleic acid transcription method |
| EP2570487A1 (en) | 2011-09-16 | 2013-03-20 | Lexogen GmbH | Nucleic acid transcription method |
| US9260714B2 (en) | 2011-12-02 | 2016-02-16 | Roche Molecular Systems, Inc. | Suppression of non-specific amplification with high-homology oligonucleotides |
| US9133490B2 (en) | 2012-05-16 | 2015-09-15 | Transgenomic, Inc. | Step-up method for COLD-PCR enrichment |
| WO2014177540A1 (en) * | 2013-04-29 | 2014-11-06 | Qiagen Marseille | A method for dna amplification with a blocking oligonucleotide |
| AU2014336987A1 (en) * | 2013-10-19 | 2016-04-14 | Trovagene, Inc. | Detecting mutations in disease over time |
| JP2017515484A (ja) * | 2014-05-19 | 2017-06-15 | ウィリアム マーシュ ライス ユニバーシティＷｉｌｌｉａｍ Ｍａｒｓｈ Ｒｉｃｅ Ｕｎｉｖｅｒｓｉｔｙ | 重複する非対立遺伝子特異的プライマー及び対立遺伝子特異的ブロッカーオリゴヌクレオチドの組成物を用いる対立遺伝子特異的な増幅 |
| US12391985B2 (en) | 2014-08-07 | 2025-08-19 | Pharmassist Ltd | Method of determining PIK3CA mutational status in a sample |
| JP6770957B2 (ja) | 2014-08-07 | 2020-10-21 | ファーマシスト リミテッドＰｈａｒｍａｓｓｉｓｔ Ｌｔｄ | 試料中のｐｉｋ３ｃａ突然変異状態を決定する方法 |
| EA037920B1 (ru) * | 2014-09-26 | 2021-06-07 | Янссен Фармацевтика Нв | Использование панелей мутантных генов fgfr для выявления онкологических пациентов, которые будут поддаваться лечению ингибитором fgfr |
| US9909169B2 (en) | 2014-12-17 | 2018-03-06 | Roche Molecular Systems, Inc. | Allele-specific amplification of nucleic acids using blocking oligonucleotides for wild type suppression |
| JP5813263B1 (ja) * | 2015-03-31 | 2015-11-17 | 日鉄住金環境株式会社 | 遺伝子変異の検出方法及びそれに用いる蛍光標識オリゴヌクレオチド |
| US9657353B2 (en) | 2015-06-26 | 2017-05-23 | Great Basin Scientific, Inc. | Specific detection of organisms derived from a sample |
| WO2017193025A1 (en) | 2016-05-06 | 2017-11-09 | William Marsh Rice University | Stoichiometric nucleic acid purification using randomer capture probe libraries |
| CN109477111B (zh) * | 2016-06-07 | 2023-12-15 | 塞弗德公司 | 热稳定聚合酶抑制剂组合物和方法 |
| CA3046953A1 (en) | 2016-12-12 | 2018-06-21 | Dana Farber Cancer Institute, Inc. | Compositions and methods for molecular barcoding of dna molecules prior to mutation enrichment and/or mutation detection |
| WO2019023243A1 (en) | 2017-07-24 | 2019-01-31 | Dana-Farber Cancer Institute, Inc. | METHODS AND COMPOSITIONS FOR SELECTING AND AMPLIFYING DNA TARGETS IN A SINGLE REACTION MIXTURE |
| WO2019099420A1 (en) * | 2017-11-15 | 2019-05-23 | Yan Wang | A method for detecting multiple dna mutations and copy number variations |
| CN111683958A (zh) | 2018-02-20 | 2020-09-18 | 威廉马歇莱思大学 | 使用多重抑制探针置换扩增进行等位基因富集的系统和方法 |
| EP3682030B1 (en) | 2018-07-19 | 2021-05-19 | Biofidelity Ltd | Improved polynucleotide sequence detection method |
| SG11202012758WA (en) * | 2018-12-17 | 2021-01-28 | Illumina Cambridge Ltd | Primer oligonucleotide for sequencing |
| GB201919186D0 (en) | 2019-12-23 | 2020-02-05 | Biofidelity Ltd | Simplified polynucleotide sequence detection method |
| US20240401122A1 (en) * | 2021-09-13 | 2024-12-05 | Nexgen Cancer Detection Llc | Methods for detecting a target polynucleotide in a sample |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2163393C (en) | 1994-11-30 | 2003-04-22 | Colleen Marie Nycz | Amplification and detection of mycobacteria nucleic acids |
| US5801155A (en) * | 1995-04-03 | 1998-09-01 | Epoch Pharmaceuticals, Inc. | Covalently linked oligonucleotide minor grove binder conjugates |
| US5849497A (en) | 1997-04-03 | 1998-12-15 | The Research Foundation Of State University Of New York | Specific inhibition of the polymerase chain reaction using a non-extendable oligonucleotide blocker |
| FR2779154B1 (fr) | 1998-05-27 | 2002-07-12 | Bio Merieux | Procede d'amplification d'au moins une sequence nucleotidique particuliere et amorces de mise en oeuvre |
| EP1141384A2 (en) * | 1999-01-06 | 2001-10-10 | Cornell Research Foundation, Inc. | Method for accelerating identification of single nucleotide polymorphisms and alignment of clones in genomic sequencing |
| EP1253205A1 (en) | 2001-04-24 | 2002-10-30 | LION Bioscience AG | Method of blocking amplification of selected sequences |
| GB0406863D0 (en) | 2004-03-26 | 2004-04-28 | Qiagen As | Nucleic acid sequencing |
| ATE476439T1 (de) | 2004-09-10 | 2010-08-15 | Human Genetic Signatures Pty | Amplifikationsblocker umfassend interkalierende nukleinsäuren (ina) enthaltend interkalierende pseudonukleotide (ipn) |
-
2008
- 2008-08-05 US US12/186,311 patent/US8071338B2/en not_active Expired - Fee Related
- 2008-08-07 JP JP2010519376A patent/JP5524838B2/ja not_active Expired - Fee Related
- 2008-08-07 CN CN200880102467.XA patent/CN101778952B/zh not_active Expired - Fee Related
- 2008-08-07 CA CA2693384A patent/CA2693384C/en not_active Expired - Fee Related
- 2008-08-07 WO PCT/EP2008/006476 patent/WO2009019008A1/en not_active Ceased
- 2008-08-07 ES ES08785392.5T patent/ES2562789T3/es active Active
- 2008-08-07 EP EP08785392.5A patent/EP2173910B1/en not_active Not-in-force
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