HUP0003944A2 - Sequencing by ligation of encoded adaptors - Google Patents
Sequencing by ligation of encoded adaptorsInfo
- Publication number
- HUP0003944A2 HUP0003944A2 HU0003944A HUP0003944A HUP0003944A2 HU P0003944 A2 HUP0003944 A2 HU P0003944A2 HU 0003944 A HU0003944 A HU 0003944A HU P0003944 A HUP0003944 A HU P0003944A HU P0003944 A2 HUP0003944 A2 HU P0003944A2
- Authority
- HU
- Hungary
- Prior art keywords
- ligation
- sequencing
- encoded adaptors
- adaptors
- encoded
- Prior art date
Links
- 238000007841 sequencing by ligation Methods 0.000 title 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
- C12Q1/6855—Ligating adaptors
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US08/659,453 US5846719A (en) | 1994-10-13 | 1996-06-06 | Oligonucleotide tags for sorting and identification |
US68958796A | 1996-08-12 | 1996-08-12 | |
PCT/US1997/009472 WO1997046704A1 (en) | 1996-06-06 | 1997-06-02 | Sequencing by ligation of encoded adaptors |
Publications (2)
Publication Number | Publication Date |
---|---|
HUP0003944A2 true HUP0003944A2 (en) | 2001-03-28 |
HUP0003944A3 HUP0003944A3 (en) | 2003-08-28 |
Family
ID=27097828
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
HU0003944A HUP0003944A3 (en) | 1996-06-06 | 1997-06-02 | Sequencing by ligation of encoded adaptors |
Country Status (13)
Country | Link |
---|---|
EP (1) | EP0923650B1 (hu) |
JP (1) | JP4124377B2 (hu) |
CN (1) | CN1195872C (hu) |
AT (1) | ATE356221T1 (hu) |
AU (1) | AU733782B2 (hu) |
CA (1) | CA2256700A1 (hu) |
CZ (1) | CZ397998A3 (hu) |
DE (1) | DE69737450T2 (hu) |
HK (1) | HK1021206A1 (hu) |
HU (1) | HUP0003944A3 (hu) |
NO (1) | NO985698L (hu) |
PL (1) | PL331513A1 (hu) |
WO (1) | WO1997046704A1 (hu) |
Families Citing this family (84)
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USRE43097E1 (en) | 1994-10-13 | 2012-01-10 | Illumina, Inc. | Massively parallel signature sequencing by ligation of encoded adaptors |
WO1998053300A2 (en) | 1997-05-23 | 1998-11-26 | Lynx Therapeutics, Inc. | System and apparaus for sequential processing of analytes |
DE69638179D1 (de) * | 1995-06-07 | 2010-06-10 | Solexa Inc | Verfahren zur Verbesserung der Effizienz der Polynukleotidsequenzierung |
GB9620769D0 (en) * | 1996-10-04 | 1996-11-20 | Brax Genomics Ltd | Nucleic acid sequencing |
US5888737A (en) * | 1997-04-15 | 1999-03-30 | Lynx Therapeutics, Inc. | Adaptor-based sequence analysis |
US6607878B2 (en) | 1997-10-06 | 2003-08-19 | Stratagene | Collections of uniquely tagged molecules |
US6265163B1 (en) | 1998-01-09 | 2001-07-24 | Lynx Therapeutics, Inc. | Solid phase selection of differentially expressed genes |
JP3944996B2 (ja) | 1998-03-05 | 2007-07-18 | 株式会社日立製作所 | Dnaプローブアレー |
EP2045334A1 (en) | 1998-06-24 | 2009-04-08 | Illumina, Inc. | Decoding of array sensors with microspheres |
US6480791B1 (en) * | 1998-10-28 | 2002-11-12 | Michael P. Strathmann | Parallel methods for genomic analysis |
WO2000039333A1 (en) * | 1998-12-23 | 2000-07-06 | Jones Elizabeth Louise | Sequencing method using magnifying tags |
NO986133D0 (no) | 1998-12-23 | 1998-12-23 | Preben Lexow | FremgangsmÕte for DNA-sekvensering |
US6261782B1 (en) * | 1999-04-06 | 2001-07-17 | Yale University | Fixed address analysis of sequence tags |
US20060275782A1 (en) | 1999-04-20 | 2006-12-07 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
EP2360270B1 (en) | 1999-05-20 | 2016-11-09 | Illumina, Inc. | Combinatorial decoding of random nucleic acid arrays |
US6544732B1 (en) | 1999-05-20 | 2003-04-08 | Illumina, Inc. | Encoding and decoding of array sensors utilizing nanocrystals |
US8481268B2 (en) | 1999-05-21 | 2013-07-09 | Illumina, Inc. | Use of microfluidic systems in the detection of target analytes using microsphere arrays |
US8080380B2 (en) | 1999-05-21 | 2011-12-20 | Illumina, Inc. | Use of microfluidic systems in the detection of target analytes using microsphere arrays |
US6403319B1 (en) * | 1999-08-13 | 2002-06-11 | Yale University | Analysis of sequence tags with hairpin primers |
US7604996B1 (en) | 1999-08-18 | 2009-10-20 | Illumina, Inc. | Compositions and methods for preparing oligonucleotide solutions |
AU2001238068A1 (en) | 2000-02-07 | 2001-08-14 | Illumina, Inc. | Nucleic acid detection methods using universal priming |
US7582420B2 (en) | 2001-07-12 | 2009-09-01 | Illumina, Inc. | Multiplex nucleic acid reactions |
WO2001057268A2 (en) | 2000-02-07 | 2001-08-09 | Illumina, Inc. | Nucleic acid detection methods using universal priming |
US7285384B2 (en) | 2000-02-16 | 2007-10-23 | Illuminia, Inc. | Parallel genotyping of multiple patient samples |
AU2003249681A1 (en) * | 2002-05-31 | 2003-12-19 | Diversa Corporation | Multiplexed systems for nucleic acid sequencing |
CA2513985C (en) | 2003-01-21 | 2012-05-29 | Illumina Inc. | Chemical reaction monitor |
DE602004024034D1 (de) * | 2003-01-29 | 2009-12-24 | 454 Corp | Nukleinsäureamplifikation auf basis von kügelchenemulsion |
GB0308852D0 (en) * | 2003-04-16 | 2003-05-21 | Lingvitae As | Method |
WO2005010184A1 (ja) * | 2003-07-25 | 2005-02-03 | Takara Bio Inc. | 変異の検出方法 |
GB0324456D0 (en) | 2003-10-20 | 2003-11-19 | Isis Innovation | Parallel DNA sequencing methods |
US7622281B2 (en) | 2004-05-20 | 2009-11-24 | The Board Of Trustees Of The Leland Stanford Junior University | Methods and compositions for clonal amplification of nucleic acid |
EP2003214B1 (en) | 2005-02-01 | 2013-04-10 | AB Advanced Genetic Analysis Corporation | Reagents, methods, and libraries for bead-based sequencing |
GB0524069D0 (en) | 2005-11-25 | 2006-01-04 | Solexa Ltd | Preparation of templates for solid phase amplification |
US8192930B2 (en) * | 2006-02-08 | 2012-06-05 | Illumina Cambridge Limited | Method for sequencing a polynucleotide template |
JPWO2007097443A1 (ja) | 2006-02-20 | 2009-07-16 | 国立大学法人 北海道大学 | Dna塩基配列を決定する方法 |
US20090062129A1 (en) * | 2006-04-19 | 2009-03-05 | Agencourt Personal Genomics, Inc. | Reagents, methods, and libraries for gel-free bead-based sequencing |
US8889348B2 (en) | 2006-06-07 | 2014-11-18 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by nanopore using modified nucleotides |
US9678055B2 (en) | 2010-02-08 | 2017-06-13 | Genia Technologies, Inc. | Methods for forming a nanopore in a lipid bilayer |
US9605307B2 (en) | 2010-02-08 | 2017-03-28 | Genia Technologies, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
US8324914B2 (en) | 2010-02-08 | 2012-12-04 | Genia Technologies, Inc. | Systems and methods for characterizing a molecule |
US8845880B2 (en) | 2010-12-22 | 2014-09-30 | Genia Technologies, Inc. | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps |
US8962242B2 (en) | 2011-01-24 | 2015-02-24 | Genia Technologies, Inc. | System for detecting electrical properties of a molecular complex |
US9110478B2 (en) | 2011-01-27 | 2015-08-18 | Genia Technologies, Inc. | Temperature regulation of measurement arrays |
US9074204B2 (en) * | 2011-05-20 | 2015-07-07 | Fluidigm Corporation | Nucleic acid encoding reactions |
JP2014531908A (ja) | 2011-10-14 | 2014-12-04 | プレジデント アンド フェローズ オブ ハーバード カレッジ | 構造アッセンブリによる配列決定 |
US11021737B2 (en) | 2011-12-22 | 2021-06-01 | President And Fellows Of Harvard College | Compositions and methods for analyte detection |
US10227639B2 (en) | 2011-12-22 | 2019-03-12 | President And Fellows Of Harvard College | Compositions and methods for analyte detection |
US8986629B2 (en) | 2012-02-27 | 2015-03-24 | Genia Technologies, Inc. | Sensor circuit for controlling, detecting, and measuring a molecular complex |
CN102766689B (zh) * | 2012-04-17 | 2015-07-22 | 盛司潼 | 一种增加测序读长的测序方法 |
EP4001427A1 (en) * | 2012-04-24 | 2022-05-25 | Gen9, Inc. | Methods for sorting nucleic acids and multiplexed preparative in vitro cloning |
CN108018343B (zh) * | 2012-05-10 | 2023-01-03 | 通用医疗公司 | 用于测定核苷酸序列的方法 |
US9914967B2 (en) | 2012-06-05 | 2018-03-13 | President And Fellows Of Harvard College | Spatial sequencing of nucleic acids using DNA origami probes |
JP2015525077A (ja) | 2012-06-15 | 2015-09-03 | ジェニア・テクノロジーズ・インコーポレイテッド | チップの構成および高精度な核酸配列決定 |
US9605309B2 (en) | 2012-11-09 | 2017-03-28 | Genia Technologies, Inc. | Nucleic acid sequencing using tags |
US9759711B2 (en) | 2013-02-05 | 2017-09-12 | Genia Technologies, Inc. | Nanopore arrays |
US10138509B2 (en) | 2013-03-12 | 2018-11-27 | President And Fellows Of Harvard College | Method for generating a three-dimensional nucleic acid containing matrix |
US10648026B2 (en) | 2013-03-15 | 2020-05-12 | The Trustees Of Columbia University In The City Of New York | Raman cluster tagged molecules for biological imaging |
ES2717756T3 (es) * | 2013-09-30 | 2019-06-25 | Qiagen Gmbh | Moléculas adaptadoras de ADN para la preparación de genotecas de ADN y método para su producción y uso |
US9551697B2 (en) | 2013-10-17 | 2017-01-24 | Genia Technologies, Inc. | Non-faradaic, capacitively coupled measurement in a nanopore cell array |
US9322062B2 (en) | 2013-10-23 | 2016-04-26 | Genia Technologies, Inc. | Process for biosensor well formation |
EP3640349A3 (en) | 2013-10-23 | 2020-07-29 | Roche Sequencing Solutions, Inc. | High speed molecular sensing with nanopores |
WO2015116734A1 (en) * | 2014-01-28 | 2015-08-06 | Lanzatech New Zealand Limited | Method of producing a recombinant microorganism |
HUE058149T2 (hu) | 2014-01-31 | 2022-07-28 | Swift Biosciences Inc | Javított eljárások DNS-szubsztrátok feldolgozására |
US10179932B2 (en) | 2014-07-11 | 2019-01-15 | President And Fellows Of Harvard College | Methods for high-throughput labelling and detection of biological features in situ using microscopy |
EP3330386A1 (en) * | 2014-09-05 | 2018-06-06 | QIAGEN GmbH | Preparation of adapter-ligated amplicons |
ES2726149T3 (es) * | 2014-09-12 | 2019-10-02 | Mgi Tech Co Ltd | Oligonucleótido aislado y su uso en la secuenciación de ácidos nucleicos |
EP3208336B1 (en) * | 2014-10-14 | 2019-11-13 | MGI Tech Co., Ltd. | Linker element and method of using same to construct sequencing library |
EP3207169B1 (en) * | 2014-10-14 | 2020-07-01 | MGI Tech Co., Ltd. | Mate pair library construction |
US10221448B2 (en) | 2015-03-06 | 2019-03-05 | Pillar Biosciences Inc. | Selective amplification of overlapping amplicons |
US10689690B2 (en) * | 2015-08-13 | 2020-06-23 | Centrillion Technology Holdings Corporation | Library construction using Y-adapters and vanishing restriction sites |
JP6882282B2 (ja) | 2015-11-03 | 2021-06-02 | プレジデント アンド フェローズ オブ ハーバード カレッジ | 三次元核酸含有マトリックスの立体撮像のための方法と装置 |
CN108603224B (zh) | 2015-12-16 | 2022-06-28 | 富鲁达公司 | 高水平多路复用扩增 |
SG11201807444PA (en) * | 2016-03-10 | 2018-09-27 | Univ Leland Stanford Junior | Transposase-mediated imaging of the accessible genome |
EP3449016A4 (en) | 2016-04-25 | 2019-10-02 | President and Fellows of Harvard College | HYBRIDIZATION CHAIN REACTION PROCESS FOR IN-SITU MOLECULE DETECTION |
WO2018013837A1 (en) * | 2016-07-15 | 2018-01-18 | The Regents Of The University Of California | Methods of producing nucleic acid libraries |
JP7057348B2 (ja) | 2016-08-31 | 2022-04-19 | プレジデント アンド フェローズ オブ ハーバード カレッジ | 蛍光in situ配列決定を用いた単一アッセイに生体分子の検出を組み合わせる方法 |
EP3507364A4 (en) | 2016-08-31 | 2020-05-20 | President and Fellows of Harvard College | METHODS OF GENERATING NUCLEIC ACID SEQUENCE LIBRARIES FOR IN SITU FLUORESCENT SEQUENCING DETECTION |
US10550425B2 (en) | 2016-11-14 | 2020-02-04 | Agilent Technologies, Inc. | Composition and method for improving signal-to-noise in hybridization to oligonucleotide arrays |
US11783918B2 (en) | 2016-11-30 | 2023-10-10 | Microsoft Technology Licensing, Llc | DNA random access storage system via ligation |
JP2020516593A (ja) | 2017-04-14 | 2020-06-11 | プレジデント アンド フェローズ オブ ハーバード カレッジ | 細胞由来のマイクロフィラメントネットワークの生成方法 |
CN107299151B (zh) * | 2017-08-28 | 2020-06-09 | 华中农业大学 | 用于鉴别稻米脂肪酸品质的dna分子标记及其应用 |
US11584929B2 (en) | 2018-01-12 | 2023-02-21 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
AU2019280712A1 (en) | 2018-06-06 | 2021-01-07 | The Regents Of The University Of California | Methods of producing nucleic acid libraries and compositions and kits for practicing same |
SG11202101934SA (en) | 2018-07-30 | 2021-03-30 | Readcoor Llc | Methods and systems for sample processing or analysis |
Family Cites Families (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5102785A (en) * | 1987-09-28 | 1992-04-07 | E. I. Du Pont De Nemours And Company | Method of gene mapping |
EP0392546A3 (en) * | 1989-04-14 | 1991-09-11 | Ro Institut Za Molekularnu Genetiku I Geneticko Inzenjerstvo | Process for determination of a complete or a partial contents of very short sequences in the samples of nucleic acids connected to the discrete particles of microscopic size by hybridization with oligonucleotide probes |
US5650274A (en) * | 1993-06-25 | 1997-07-22 | Hitachi, Ltd. | DNA analyzing method |
GB9401200D0 (en) * | 1994-01-21 | 1994-03-16 | Medical Res Council | Sequencing of nucleic acids |
US5552278A (en) * | 1994-04-04 | 1996-09-03 | Spectragen, Inc. | DNA sequencing by stepwise ligation and cleavage |
US5604097A (en) * | 1994-10-13 | 1997-02-18 | Spectragen, Inc. | Methods for sorting polynucleotides using oligonucleotide tags |
HUP9900910A2 (hu) * | 1995-06-07 | 1999-07-28 | Lynx Therapeutics, Inc. | Oligonukleotid jelzések osztályozáshoz és azonosításhoz |
-
1997
- 1997-06-02 CZ CZ983979A patent/CZ397998A3/cs unknown
- 1997-06-02 AU AU33740/97A patent/AU733782B2/en not_active Ceased
- 1997-06-02 PL PL97331513A patent/PL331513A1/xx unknown
- 1997-06-02 CN CNB971971013A patent/CN1195872C/zh not_active Expired - Lifetime
- 1997-06-02 JP JP50075598A patent/JP4124377B2/ja not_active Expired - Lifetime
- 1997-06-02 HU HU0003944A patent/HUP0003944A3/hu not_active Application Discontinuation
- 1997-06-02 CA CA002256700A patent/CA2256700A1/en not_active Abandoned
- 1997-06-02 DE DE69737450T patent/DE69737450T2/de not_active Expired - Lifetime
- 1997-06-02 EP EP97929757A patent/EP0923650B1/en not_active Expired - Lifetime
- 1997-06-02 AT AT97929757T patent/ATE356221T1/de not_active IP Right Cessation
- 1997-06-02 WO PCT/US1997/009472 patent/WO1997046704A1/en active IP Right Grant
-
1998
- 1998-12-04 NO NO985698A patent/NO985698L/no not_active Application Discontinuation
-
1999
- 1999-12-04 HK HK99105687A patent/HK1021206A1/xx not_active IP Right Cessation
Also Published As
Publication number | Publication date |
---|---|
CN1195872C (zh) | 2005-04-06 |
EP0923650A1 (en) | 1999-06-23 |
CN1230226A (zh) | 1999-09-29 |
CZ397998A3 (cs) | 1999-07-14 |
AU733782B2 (en) | 2001-05-24 |
CA2256700A1 (en) | 1997-12-11 |
AU3374097A (en) | 1998-01-05 |
HK1021206A1 (en) | 2000-06-02 |
JP2000515006A (ja) | 2000-11-14 |
PL331513A1 (en) | 1999-07-19 |
NO985698D0 (no) | 1998-12-04 |
DE69737450T2 (de) | 2007-11-29 |
ATE356221T1 (de) | 2007-03-15 |
NO985698L (no) | 1999-02-08 |
DE69737450D1 (de) | 2007-04-19 |
HUP0003944A3 (en) | 2003-08-28 |
EP0923650B1 (en) | 2007-03-07 |
JP4124377B2 (ja) | 2008-07-23 |
WO1997046704A1 (en) | 1997-12-11 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
FC4A | Lapse of provisional application due to refusal |