EP1532265A2 - Method for producing ketocarotinoids in genetically modified organisms - Google Patents

Method for producing ketocarotinoids in genetically modified organisms

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Publication number
EP1532265A2
EP1532265A2 EP03792348A EP03792348A EP1532265A2 EP 1532265 A2 EP1532265 A2 EP 1532265A2 EP 03792348 A EP03792348 A EP 03792348A EP 03792348 A EP03792348 A EP 03792348A EP 1532265 A2 EP1532265 A2 EP 1532265A2
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EP
European Patent Office
Prior art keywords
sequence
ketolase
amino acid
seq
sequence seq
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Application number
EP03792348A
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German (de)
French (fr)
Inventor
Matt Sauer
Ralf Flachmann
Martin Klebsattel
Christel Renate Schopfer
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
SunGene GmbH
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SunGene GmbH
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Filing date
Publication date
Priority claimed from DE2002138980 external-priority patent/DE10238980A1/en
Priority claimed from DE10238979A external-priority patent/DE10238979A1/en
Priority claimed from DE10238978A external-priority patent/DE10238978A1/en
Priority claimed from DE2002153112 external-priority patent/DE10253112A1/en
Priority claimed from DE2002158971 external-priority patent/DE10258971A1/en
Application filed by SunGene GmbH filed Critical SunGene GmbH
Publication of EP1532265A2 publication Critical patent/EP1532265A2/en
Withdrawn legal-status Critical Current

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    • A23FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
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    • A23L5/00Preparation or treatment of foods or foodstuffs, in general; Food or foodstuffs obtained thereby; Materials therefor
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    • A23L5/43Addition of dyes or pigments, e.g. in combination with optical brighteners using naturally occurring organic dyes or pigments, their artificial duplicates or their derivatives
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    • C12N15/8216Methods for controlling, regulating or enhancing expression of transgenes in plant cells
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    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
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    • C12N15/8243Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/825Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving pigment biosynthesis
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    • Y02A40/81Aquaculture, e.g. of fish
    • Y02A40/818Alternative feeds for fish, e.g. in aquacultures

Definitions

  • the present invention relates to a process for the preparation of ketocarotenoids by cultivating genetically modified organisms which have a modified ketolase activity compared to the wild type, the genetically modified organisms, and their use as food and feed and for the production of ketocarotenoid extracts.
  • Ketocarotenoids are synthesized de novo in bacteria, algae, fungi and plants.
  • Ketocarotenoids i.e. carotenoids that contain at least one keto group, such as astaxanthin, canthaxanthin, echinenone, 3-hydroxyechinenone, 3'-hydroxyechinenone, adonirubin and adonixanthin are natural antioxidants and pigments that are produced by some algae and microorganisms as secondary metabolites ,
  • ketocarotenoids and especially astaxanthin are used as pigmentation aids in animal nutrition, especially in trout, salmon and shrimp farming.
  • Natural ketocarotenoids such as natural astaxanthin
  • Nucleic acids encoding a ketolase and the corresponding protein sequences have been isolated and annotated from various organisms, such as nucleic acids encoding a ketolase from Agrobacterium aurantiacum (EP 735 137, Accession NO: D58420), from Alcaligenes sp. PC-1 (EP 735137, Accession NO: D58422), Haematococcus pluvialis Flotow em.
  • EP 735 137 describes the production of xanthophylls in microorganisms, such as, for example, E. coli by introducing ketolase genes (crtW) from Agrobacterium aurantiacum or Alcaligenes sp. PC-1 in microorganisms.
  • ketolase genes crtW
  • WO 98/18910 and Hirschberg et al. describe the synthesis of ketocarotenoids in nectaries of tobacco flowers by introducing the ketolase gene from Haematococcus pluvialis (crtO) into tobacco.
  • WO 01/20011 describes a DNA construct for the production of ketocarotenoids, in particular astaxanthin, in seeds of oilseed plants such as oilseed rape, sunflower, soybean and mustard using a seed-specific promoter and a ketolase from Haematococcus pluvialis.
  • ketocarotenoids All processes described in the prior art for the production of ketocarotenoids and in particular the processes described for the production of astaxanthin have the disadvantage that the transgenic organisms provide a large amount of hydroxylated by-products, such as zeaxanthin and adonixanthin.
  • the invention was therefore based on the object of providing a process for the preparation of ketocarotenoids by cultivating genetically modified organisms, or of providing further genetically modified organisms which produce ketocarotenoids which have the disadvantages of the prior art described above to a lesser extent or no longer.
  • a method for producing ketocarotenoids has been found by cultivating genetically modified organisms which have an altered ketolase activity compared to the wild type and the altered ketolase activity is caused by a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • the organisms according to the invention are preferably naturally able, as starting organisms, to produce carotenoids such as, for example, ⁇ -carotene or zeaxanthin, or can be put into a position by carotinoids such as, for example, reorganization of metabolic pathways or complementation for example, to produce ⁇ -carotene or zeaxanthin.
  • ketocarotenoids such as astaxanthin or canthaxanthin.
  • These organisms such as Haematococcus pluvialis, Paracoccus marcusii, Xan- thophyllomyces dendrorhous, Bacillus circulans, Chlorococcum, Phaffia rhodozyma, Adonis, Neochloris wimmeri, vacuolatus Protosiphon botryoides, Scotiellopsis oocystifor- mis, Scenedesmus, Chlorela zofingiensis, braunii Ankistrodesmus, Euglena sanguinea, Bacillus atrophaeus, Blakeslea already have ketolase activity as a starting or wild-type organism.
  • organisms are therefore used as starting organisms which already have ketolase activity as a wild type or starting organism.
  • the genetic modification causes an increase in ketolase activity compared to the wild type or parent organism.
  • Ketolase activity means the enzyme activity of a ketolase.
  • a ketolase is understood to mean a protein which has the enzymatic activity of introducing a keto group on the optionally substituted ⁇ -ionone ring of carotenoids.
  • a ketolase is understood to be a protein which has the enzymatic activity to convert ⁇ -carotene into canthaxanthin.
  • ketolase activity is understood to mean the amount of ⁇ -carotene or amount of canthaxanthin formed by the protein ketolase in a certain time.
  • the amount of ⁇ -carotene converted or the amount of canthaxanthin formed is increased in a certain time by the protein ketolase compared to the wild type.
  • This increase in ketolase activity is preferably at least 5%, more preferably at least 20%, more preferably at least 50%, more preferably at least 100%, more preferably at least 300%, even more preferably at least 500%, in particular at least 600% of the ketolase activity of the wild type.
  • wild type is understood to mean the corresponding starting organism.
  • organism can be understood to mean the starting organism (wild type) or a genetically modified organism according to the invention, or both.
  • wild type is used to increase or cause the ketolase activity, for the increase in hydroxylase activity described below, for the increase described below ⁇ -cyclase activity and the increase in the content of ketocarotenoids each understood a reference organism.
  • This reference organism is preferably Haematococcus pluvialis for microorganisms which already have ketolase activity as a wild type.
  • This reference organism is preferably Blakeslea for microorganisms which, as a wild type, have no ketolase activity.
  • This reference organism is for plants which already have a ketolase activity as a wild type, preferably Adonis aestivalis, Adonis flammeus or Adonis annuus, particularly preferably Adonis aestivalis.
  • This reference organism is particularly preferred for plants which have no ketolase activity in petals as a wild type, preferably Tagetes erecta, Tagetes patula, Tagetes lucida, Tagetes pringlei, Tagetes palmeri, Tagetes minuta or Tagetes campanulata, particularly preferably Tagetes erecta.
  • ketolase activity in genetically modified organisms according to the invention and in wild-type or reference organisms is preferably determined under the following conditions:
  • the ketolase activity in plant or microorganism material is determined in accordance with the method of Frazer et al., (J. Biol. Chem. 272 (10): 6128-6135, 1997).
  • the ketolase activity in plant or microorganism extracts is determined with the substrates ⁇ -carotene and canthaxanthin in the presence of lipid (soy lecithin) and detergent (sodium cholate).
  • Substrate / product ratios from the ketolase assays are determined by means of HPLC.
  • the ketolase activity can be increased in various ways, for example by switching off inhibitory regulatory mechanisms at the translation and protein levels or by increasing the gene expression of a nucleic acid encoding a ketolase compared to the wild type, for example by inducing the ketolase gene by activators or by introducing nucleic acids encoding a ketolase into the organism.
  • Increasing the gene expression of a nucleic acid encoding a ketolase means, in this embodiment, the manipulation of the expression of the organisms' own endogenous ketolases. For example can be achieved by changing the promoter DNA sequence for genes coding for ketolase. Such a change, which results in a changed or preferably increased expression rate of at least one endogenous ketolase gene, can be carried out by deleting or inserting DNA sequences.
  • an increased expression of at least one endogenous ketolase gene can be achieved in that a regulatory protein which is not found or modified in the wild-type organism interacts with the promoter of these genes.
  • Such a regulator can represent a chimeric protein which consists of a DNA binding domain and a transcription activator domain, as described, for example, in WO 96/06166.
  • the ketolase activity is increased compared to the wild type by increasing the gene expression of a nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • the gene expression of a nucleic acid encoding a ketolase is increased by introducing nucleic acids encoding ketolases into the organisms, the ketolases having the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • At least one further ketolase gene is present in the transgenic organisms according to the invention in comparison to the wild type, encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or one of these This sequence is derived by substitution, insertion or deletion of amino acids and has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • organisms are used as the starting organisms which, as a wild type, have no ketase activity.
  • the genetic modification causes it. Ketolase activity in organisms.
  • the genetically modified organism according to the invention thus has a ketolase activity in comparison to the genetically unmodified wild type and is therefore preferred. It is able to transgenically express a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • the gene expression of a nucleic acid encoding a ketolase is caused analogously to the above-described increase in gene expression of a nucleic acid.
  • Encoding a ketolase preferably by introducing nucleic acids encoding ketolases containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has, in the starting organism.
  • any nucleic acids encoding a ketolase containing the amino acid sequence SEQ can be used in both embodiments. ID. NO. 2 or one of these Sequence derived by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has to be used.
  • ketocarotenoids with a smaller amount of hydroxylated by-products in the method according to the invention than when using the ketolase genes used in the prior art.
  • nucleic acids mentioned in the description can be, for example, an RNA, DNA or cDNA sequence.
  • nucleic acid sequences which have already been processed such as the corresponding cDNAs, are preferred use.
  • Nostoc punctiforme ATTC 29133 nucleic acid: Acc.-No. NZ_AABC01000195, base pair 55.604 to 55.392 (SEQ ID NO: 3); Protein: Acc.-No. ZP_00111258 (SEQ ID NO: 4) (annotated as putative protein) or
  • Nostoc punctiforme ATTC 29133 nucleic acid: Acc.-No. NZ_AABC01000196, base pair 140.571 to 139.810 (SEQ ID NO: 5), protein: (SEQ ID NO: 6) (not annotated), Synechococcus sp. WH 8102, nucleic acid: Acc.-No. NZ_AABD01000001, base pair 1, 354.725-1, 355.528 (SEQ ID NO: 46), protein: Acc.-No. ZP_00115639 (SEQ ID NO: 47) (annotated as putative protein),
  • Nodularia spumigena NSOR10 (Accession NO: AY210783, AAO64399; Nucleic acid: SEQ ID NO: 52, Protein: SEQ ID NO: 53)
  • ketolases and ketolase genes that can be used in the method according to the invention can be obtained, for example, from different organisms whose genomic sequence is known by comparing the identity of the amino acid sequences or the corresponding back-translated nucleic acid sequences from databases with the sequences SEQ ID NO described above : 2 easy to find.
  • ketolases and ketolase genes can also be easily found using hybridization techniques in a manner known per se, starting from the nucleic acid sequences described above, in particular starting from the sequences SEQ ID NO: 1 from various organisms, the genomic sequence of which is not known.
  • the hybridization can take place under moderate (low stringency) or preferably under stringent (high stringency) conditions.
  • the conditions during the washing step can be selected from the range of conditions limited by those with low stringency (with 2X SSC at 50_C) and those with high stringency (with 0.2X SSC at 50_C, preferably at 65_C) (20X SSC: 0, 3 M sodium citrate, 3 M sodium chloride, pH 7.0).
  • the temperature during the washing step can be raised from moderate conditions at room temperature, 22 ° C, to stringent conditions at 65 ° C. s
  • Both parameters, salt concentration and temperature, can be varied at the same time, one of the two parameters can also be kept constant and only the other can be varied.
  • Denaturing agents such as formamide or SDS can also be used during hybridization. In the presence of 50% formamide, the hybridization is preferably carried out at 42 ° C.
  • 6X SSC 0.5% SDS, 100 mg / ml denatured, fragmented salmon sperm DNA at 68 ° C, or (v) 6XSSC, 0.5% SDS, 100 mg / ml denatured, fragmented salmon sperm DNA, 50% formamide at 42 ° C, or
  • nucleic acids encoding a ketolase are introduced, containing the amino acid sequence SEQ ID NO: 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which preferably has an identity of at least 50% at least 60%, preferably at least 65%, preferably at least 70%, more preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95%, particularly preferably at least 98% at the amino acid level with the Sequence SEQ ID NO: 2 has.
  • This can be a natural ketolase sequence that can be found as described above by comparing the identity of the sequences from other organisms or an artificial ketolase sequence that can be started from the sequence SEQ ID NO: 2 by artificial variation, for example by Substitution, insertion or deletion of amino acids has been modified.
  • substitution is to be understood as meaning the replacement of one or more amino acids by one or more amino acids. So-called conservative exchanges are preferably carried out, in which the replaced amino acid has a similar property to the original amino acid, for example replacement of Glu by Asp, Gin by Asn, Val by Ile, Leu by Ile, Ser by Thr.
  • Deletion is the replacement of an amino acid with a direct link.
  • Preferred positions for deletions are the termini of the polypeptide and the links between the individual protein domains.
  • Inserts are insertions of amino acids into the polypeptide chain, with a direct bond being formally replaced by one or more amino acids.
  • Identity between two proteins is understood to mean the identity of the amino acids over the respective total protein length, in particular the identity which is obtained by comparison using the Vector NTI Suite 7.1 software from Informax (USA) using the Clustal method (Higgins DG, Sharp PM.Fast and sensitive multiple sequence alignments on a microcomputer. Comput Appl. Biosci. 1989 Apr; 5 (2): 151-1) is calculated using the following parameters:
  • Gap opening penalty 10 Gap extension penalty 10
  • a ketolase which has an identity of at least 42% at the amino acid level with the sequence SEQ ID NO: 2 is accordingly understood to be a ketolase which, when comparing its sequence with the sequence SEQ ID NO: 2, in particular according to the above program logarithm with the above parameter set has an identity of at least 42%.
  • the sequence of the ketolase from Nostoc punctiform ATTC 29133 (SEQ ID NO: 4) with the sequence of the ketolase from Nostoc sp.
  • Strain PCC7120 (SEQ ID NO: 2) has an identity of 65%.
  • the sequence of the second ketolase from Nostoc punctiform ATTC 29133 (SEQ ID NO: 6) with the sequence of the ketolase from Nostoc sp.
  • Strain PCC7120 (SEQ ID NO: 2), for example, has an identity of 58%.
  • Suitable nucleic acid sequences can be obtained, for example, by back-translating the polypeptide sequence in accordance with the genetic code.
  • codons are preferably used for this which are frequently used in accordance with the organism-specific "codon usage".
  • the "codon usage” can easily be determined on the basis of computer evaluations of other, known genes of the organisms in question.
  • a nucleic acid containing the sequence SEQ ID NO: 1 is introduced into the organism.
  • All of the above-mentioned ketolase genes can also be produced in a manner known per se by chemical synthesis from the nucleotide building blocks, for example by fragment condensation of individual overlapping, complementary nucleic acid building blocks of the double helix.
  • the chemical synthesis of oligonucleotides can be carried out, for example, in a known manner using the phosphoamidite method (Voet, Voet, 2nd edition, Wiley Press New York, pp. 896-897).
  • the sequence of the ketolase from Nostoc sp. Strain PCC7120 (SEQ ID NO: 2) has an identity of 39% (Agrobacterium aurantiacum (EP 735 137, Accession NO: D58420), 40% (Alcaligenes) with the sequences of the ketolases used in the methods of the prior art sp. PC-1 (EP 735137, Accession NO: D58422) and 20 to 21% (Haematococcus pluvialis Flotow em.
  • organisms are cultivated which, in addition to the increased ketolase activity, have an increased hydroxylase activity and / or ⁇ -cyclase activity compared to the wild type.
  • Hydroxylase activity means the enzyme activity of a hydroxylase.
  • a hydroxylase is understood to mean a protein which has the enzymatic activity of introducing a hydroxyl group on the optionally substituted ⁇ -ionone ring of carotenoids.
  • a hydroxylase is understood to mean a protein which has the enzymatic activity, ⁇ -carotene in zeaxanthin or canthaxanthin in
  • hydroxylase activity is understood to mean the amount of ⁇ -carotene or canthaxanthin converted or the amount of zeaxanthin or astaxanthin formed in a certain time by the protein hydroxylase.
  • the amount of ⁇ -carotene or canthaxantine or the amount of zeaxanthin or astaxanthin formed is increased by the protein hydroxylase in a certain time compared to the wild type.
  • This increase is preferably the hydroxylase activity of at least 5%, more preferably at least 20%, more preferably at least 50%, more preferably at least 100%, more preferably at least 300%, more preferably at least • 500%, especially at least 600% of the hydroxylase activity of the wild type.
  • ⁇ -cyclase activity means the enzyme activity of a ⁇ -cyclase.
  • a ⁇ -cyclase is understood to mean a protein which has the enzymatic activity to convert a terminal, linear residue of lycopene into a ⁇ -ionone ring.
  • a ⁇ -cyclase is understood to be a protein which has the enzymatic activity to convert ⁇ -carotene into ⁇ -carotene.
  • ß-cyclase activity is understood to mean the amount of ⁇ -carotene converted or the amount of ß-carotene formed in a certain time by the protein ß-cyclase.
  • the amount of lycopene or ⁇ -carotene converted or the amount of ⁇ -carotene formed from lycopene or the formed amount of ß-carotene from ⁇ -carotene increased.
  • This increase in the ⁇ -cyclase activity is preferably at least 5%, more preferably at least 20%, more preferably at least 50%, more preferably min. at least 100%, more preferably at least 300%, even more preferably at least 500%, in particular at least 600% of the ⁇ -cyclase activity of the wild type.
  • hydroxylase activity in genetically modified organisms according to the invention and in wild-type or reference organisms is preferably determined under the following conditions:
  • the activity of the hydroxylase is according to Bouvier et al. (Biochim. Biophys. Acta 1391 (1998), 320-328) in vitro. Ferredoxin, ferredoxin-NADP oxidoreductase, catalase, NADPH and ⁇ -carotene with mono- and digalactosylglycerides are added to a certain amount of organism extract.
  • the hydroxylase activity is particularly preferably determined under the following conditions according to Bouvier, Keller, d'Harlingue and Camara (Xanthophyll bio-synthesis: molecular and functional identification of carotenoid hydroxylases for rom pepper fruits (Capsicum annuum L; Biochim. Biophys. Acta 1391 (1998), 320-328):
  • the in vitro assay is carried out in a volume of 0.250 ml.
  • the mixture contains 50 mM potassium phosphate (pH 7.6), 0.025 mg ferredoxin from spinach, 0.5 units ferredoxin-NADP + oxidoreductase from spinach, 0.25 mM NADPH, 0.010 mg beta
  • Carotene (emulsified in 0.1 mg Tween 80), 0.05 mM of a mixture of mono- and digalactosylglycerides (1: 1), 1 unit of catalysis, 200 mono- and digalactosylglycerides (1: 1), 0.2 mg bovine serum albumin and organism extract in different volumes.
  • the reaction mixture is incubated at 30 ° C for 2 hours.
  • the reaction products are extracted with organic solvent such as acetone or chloroform / methanol (2: 1) and determined by HPLC.
  • ⁇ -cyclase activity in genetically modified organisms according to the invention and in wild-type or reference organisms is preferably determined under the following conditions:
  • the activity of the ⁇ -cyclase is determined according to Fräser and Sandmann (Biochem. Biophys. Res. Comm. 185 (1) (1992) 9-15) / n vitro. Potassium phosphate as a buffer (pH 7.6), lycopene as a substrate, stomaprotein from paprika, NADP +, NADPH and ATP are added to a certain amount of organism extract.
  • the ⁇ -cyclase activity is particularly preferably determined under the following conditions according to Bouvier, d'Harlingue and Camara (Molecular Analysis of carotenoid cyclae inhibition; Arch. Biochem. Biophys. 346 (1) (1997) 53-64):
  • the in vitro assay is carried out in a volume of 250 ⁇ l volume.
  • the mixture contains 50 mM potassium phosphate (pH 7.6), different amounts of organism extract, 20 nM lycopene, 250 ⁇ g of chromoplastid stromal protein from paprika, 0.2 mM NADP +, 0.2 mM NADPH and 1 mM ATP.
  • NADP / NADPH and ATP are dissolved in 10 ml ethanol with 1 mg Tween 80 immediately before adding to the incubation medium. After a reaction time of 60 minutes at 30 ° C., the reaction is terminated by adding chloroform / methanol (2: 1). The reaction products extracted in chloroform are analyzed by HPLC.
  • the hydroxylase activity and / or ⁇ -cyclase activity can be increased in various ways, for example by switching off inhibitory regulatory mechanisms at the expression and protein level or by increasing the gene expression of nucleic acids encoding a hydroxylase and / or of nucleic acids , encoding a ⁇ -cyclase, compared to the wild type.
  • the increase in the gene expression of the nucleic acids encoding a hydroxylase and / or the increase in the gene expression of the nucleic acid encoding a ⁇ -cyclase compared to the wild type can also be achieved in various ways, for example by inducing the hydroxylase gene and / or ⁇ -cyclase Gene by activators or by introducing one or more hydroxylase gene copies and / or ⁇ -cyclase gene copies, ie by introducing at least one nucleic acid encoding a hydroxylase and / or at least one nucleic acid encoding a ⁇ -cyclase into the organism ,
  • Increasing the gene expression of a nucleic acid encoding a hydroxylase and / or ⁇ -cyclase means according to the invention the manipulation of the expression of the organism's own endogenous hydroxylase and / or ⁇ -cyclase. This can be achieved, for example, by changing the promoter DNA sequence for genes encoding hydroxylases and / or ⁇ -cyclases. Such a change, which results in an increased expression rate of the gene, can take place, for example, by deleting or inserting DNA sequences.
  • an altered or increased expression of an endogenous hydroxylase and / or ⁇ -cyclase gene can be achieved in that a regulator protein which does not occur in the non-transformed organism interacts with the promoter of this gene.
  • Such a regulator can represent a chimeric protein which consists of a DNA binding domain and a transcription activator domain, as for example in
  • the gene expression of a nucleic acid encoding a hydroxylase is increased and / or the gene expression of a nucleic acid encoding a ⁇ -cyclase is increased by introducing at least one nucleic acid encoding a hydroxylase and / or by introducing at least one a nucleic acid encoding a ⁇ -cyclase in the organism.
  • any hydroxylase gene or each ⁇ -cyclase gene that is to say any nucleic acid which codes for a hydroxylase and any nucleic acid which codes for a ⁇ -cyclase, can be used for this purpose.
  • genomic hydroxylase or. ⁇ -cyclase nucleic acid sequences from eukaryotic sources which contain introns are, in the event that the host organism is unable or cannot be able to express the corresponding hydroxylase or ⁇ -cyclase, preferably to use already processed nucleic acid sequences, such as the corresponding cDNAs.
  • An example of a hydroxylase gene is a nucleic acid encoding a hydroxylase from Haematococcus pluvialis, accession AX038729, WO 0061764); (Nucleic acid: SEQ ID NO: 15, protein: SEQ ID NO: 16).
  • ⁇ -cyclase gene is a nucleic acid encoding a ⁇ -cyclase from tomato (Accession X86452) (nucleic acid: SEQ ID NO: 17, protein: SEQ ID NO: 18).
  • the preferred transgenic organisms according to the invention therefore have at least one further hydroxylase gene and / or ⁇ -cyclase gene compared to the wild type.
  • the genetically modified organism has, for example, at least one exogenous nucleic acid encoding a hydroxylase, or at least two endogenous nucleic acids encoding a hydroxylase and / or at least one exogenous nucleic acid encoding a ⁇ -cyclase, or at least two endogenous nucleic acids encoding one ⁇ -cyclase.
  • nucleic acids encoding proteins are preferably used as the hydroxylase genes, containing the amino acid sequence SEQ ID NO: 16 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids and having an identity of at least 30%, preferably at least 50%, more preferably at least 70%, even more preferably at least 90%, most preferably at least 95% at the amino acid level with the
  • Sequence SEQ ID NO: 16 which have the enzymatic property of a hydroxylase.
  • hydroxylases and hydroxylase genes can be obtained, for example, from various organisms whose genomic sequence is known, as described above, by comparing the homology of the amino acid sequences or the corresponding back-translated nucleic acid sequences from databases with the SEQ ID. NO: 16 easy to find.
  • hydroxylases and hydroxylase genes can also be found, for example, starting from the sequence SEQ ID NO: 15 from various organisms. whose genomic sequence is not known, as described above, can easily be found by hybridization and PCR techniques in a manner known per se.
  • nucleic acids are introduced into organisms which code for proteins containing the amino acid sequence of the hydroxylase of the sequence SEQ ID NO: 16.
  • Suitable nucleic acid sequences can be obtained, for example, by back-translating the polypeptide sequence in accordance with the genetic code.
  • codons which are frequently used in accordance with the organism-specific "codon usage” are preferably used for this. This "codon usage” can easily be determined on the basis of computer evaluations of other known genes of the organisms in question.
  • a nucleic acid containing the sequence SEQ is brought. ID. NO: 15, in the organism.
  • nucleic acids which encode proteins are preferably used as the ⁇ -cyclase genes, comprising the amino acid sequence SEQ ID NO: 18 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids and having an identity of at least 30 %, preferably at least 50%, more preferably at least 70%, even more preferably at least 90%, most preferably at least 95% at the amino acid level with the sequence SEQ ID NO: 18, and which have the enzymatic property of a ⁇ -cyclase.
  • ⁇ -cyclases and ⁇ -cyclase genes can easily be found, for example, from various organisms whose genomic sequence is known, as described above, by comparing the homology of the amino acid sequences or the corresponding back-translated nucleic acid sequences from databases with SEQ ID NO: 18.
  • ⁇ -cyclases and ⁇ -cyclase genes can also be derived, for example, from the sequence SEQ ID NO: 17 from different organisms, whose genomic sequence is not known can easily be found by hybridization and PCR techniques in a manner known per se.
  • nucleic acids are introduced into organisms which encode proteins containing the amino acid sequence of the ⁇ -cyclase of the sequence SEQ. ID. NO: 18.
  • Suitable nucleic acid sequences can be obtained, for example, by back-translating the polypeptide sequence in accordance with the genetic code.
  • codons which are frequently used in accordance with the organism-specific "codon usage” are preferably used for this. This "codon usage” can easily be determined on the basis of computer evaluations of other known genes of the organisms in question.
  • a nucleic acid containing the sequence SEQ is brought. ID. NO: 17 in the organism.
  • All of the above-mentioned hydroxylase genes or ⁇ -cyclase genes can also be produced in a manner known per se by chemical synthesis from the nucleotide building blocks, for example by fragment condensation of individual overlapping, complementary nucleic acid building blocks of the double helix.
  • the chemical synthesis of oligonucleotides can be carried out, for example, in a known manner using the phosphoamidite method (Voet, Voet, 2nd edition, Wiley Press New York, pages 896-897).
  • the attachment of synthetic oligonucleotides and the filling of gaps using the Kleenow fragment of DNA polymerase and ligation reactions as well as general cloning methods are described in Sambrook et al. (1989) Molecular cloning: A laboratory manual, Cold Spring Harbor Laboratory Press.
  • these genetically modified organisms can be produced, for example, by introducing individual nucleic acid constructs (expression cassettes) or by introducing multiple constructs which contain up to two or three of the activities described.
  • organisms are preferably understood to mean organisms which, as wild-type or starting organisms, naturally or by genetic complementation and / or reorganization of the metabolic pathways, are capable of producing carotenoids, in particular ⁇ -carotene and / or zeaxanthin and / or neoxanthine and / or violaxanthin and / or to produce lutein.
  • Further preferred organisms already have hydroxylase activity as wild-type or starting organisms and are therefore capable of producing zeaxanthin as wild-type or starting organisms.
  • Preferred organisms are plants or microorganisms, such as bacteria, yeasts, algae or fungi.
  • Both bacteria can be used as bacteria that are able to synthesize xanthophylls due to the introduction of genes of the carotenoid biosynthesis of a carotenoid-producing organism, such as bacteria of the genus Escherichia, which contain, for example, crt genes from Erwinia, as well as bacteria. which are capable of synthesizing xanthophylls, such as, for example, bacteria of the genus Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc or cyanobacteria of the genus Synechocystis.
  • Preferred bacteria are Escherichia coli, Erwinia herbicola, Erwinia uredovora, Agrobacterium aurantiacum, Alcaligenes sp. PC-1, Flavobacterium sp. strain R1534, the Cyanobacterium Synechocystis sp. PCC6803, Paracoccus marcusii or Paracoccus carotinifaciens.
  • yeasts are Candida, Saccharomyces, Hansenula, Pichia or Phaffia. Particularly preferred yeasts are Xanthophyllomyces dendrorhous or Phaffia rhodozyma.
  • Preferred fungi are Aspergillus, Trichoderma, Ashbya, Neurospora, Blakeslea, Phycomyces, Fusarium or others in Indian Chem. Engr. Section B. Vol. 37, No. 1, 2 (1995) on page 15, table 6 described mushrooms.
  • Preferred algae are green algae, such as algae of the genus Haematococcus, Phaedactylum tricornatum, Volvox or Dunaliella. Particularly preferred algae are Haematococcus puvialis or Dunaliella bardawil.
  • Plants selected from the Ranuncu families are particularly preferred plants. iaceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Lina- ceae, Vitaceae, Brassicaceae, Cucurbitaceae, Primulaceae, Caryophyl Iaceae, Amaranthaceae, Gentianaceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae , Poaceae, Orchidaceae, Malvaceae, liliaceae or Lamiaceae.
  • Very particularly preferred plants are selected from the group of the plant genera Marigold, Tagetes errecta, Tagetes patula, Acacia, Aconitum, Adonis, Arnica, Aquilegia, Aster, Astragalus, Bignonia, Calendula, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum , Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia, Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillaea, Helenium, Helianthus, Hepatica , Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kenya, Labumum, Lathyrus, Leontodon, Lili
  • the cultivation step of the genetically modified organisms is preferably followed by harvesting the organisms and, more preferably, additionally isolating ketocarotenoids from the organisms.
  • the organisms are harvested in a manner known per se in accordance with the respective organism.
  • Microorganisms such as bacteria, yeast, algae or fungi or plant cells, which are cultivated by fermentation in liquid nutrient media, can be separated off, for example, by centrifuging, decanting or filtering. Plants are grown in a conventional manner on nutrient media and corresponds' speaking harvested.
  • the cultivation of the genetically modified microorganisms is preferably carried out in the presence of oxygen at a cultivation temperature of at least about 20 ° C, e.g. 20 ° C to 40 ° C, and a pH of about 6 to 9.
  • the microorganisms are preferably first cultivated in the presence of oxygen and in a complex medium, such as e.g. TB or LB medium at a cultivation temperature of about 20 ° C or more, and a pH of about 6 to 9 until a sufficient cell density is reached.
  • a complex medium such as e.g. TB or LB medium
  • the cultivation is carried out after induction of ketolase expression in the presence of oxygen, e.g. 12 hours to 3 days continued.
  • ketocarotenoids are isolated from the harvested biomass in a manner known per se, for example by extraction and, if appropriate, further chemical or physical purification processes, such as, for example, precipitation methods, crystallography, thermal separation processes, such as rectification processes or physical separation processes, such as, for example, chromatography.
  • the ketocarotenoids in the genetically modified plants according to the invention can preferably be produced specifically in various plant tissues, such as, for example, seeds, leaves, fruits, flowers, in particular in petals.
  • Ketocarotenoids are isolated from the harvested petals in a manner known per se, for example by drying and subsequent extraction and, if appropriate, further chemical or physical purification processes, such as, for example, precipitation methods, crystallography, thermal separation processes, such as rectification processes or physical separation processes, such as chromatography. Ketocarotenoids are isolated from the petals, for example, preferably using organic solvents such as acetone, hexane, ether or tert-methylbutyl ether.
  • ketocarotenoids in particular from petals, are described, for example, in Egger and Kleinig (Phytochemistry (1967) 6, 437-440) and Egger (Phytochemistry (1965) 4, 609-618).
  • ketocarotenoids are preferably selected from the group consisting of astaxanthin, canthaxanthin, echinenone, 3-hydroxyechinenone, 3'-hydroxyechinenone, adonirubin and adonixanthin.
  • ketocarotenoid is astaxanthin.
  • ketocarotenoids are obtained in free form or as fatty acid esters.
  • the ketocarotenoids are obtained in the process according to the invention in the form of their mono- or diesters with fatty acids.
  • Some proven fatty acids are e.g. Myristic acid, palmitic acid, stearic acid, oleic acid, linolenic acid, and lauric acid (Kamata and Simpson (1987) Comp. Biochem. Physiol. Vol. 86B (3), 587-591).
  • the ketocarotenoids can be produced in the whole plant or, in a preferred embodiment, specifically in plant tissues which contain chromoplasts.
  • Preferred plant tissues are, for example, roots, seeds, leaves, Fruits, flowers and especially nectaries and petals, which are also called petals.
  • genetically modified plants are used which have the highest expression rate of a ketolase in flowers.
  • the gene expression of the ketolase takes place under the control of a flower-specific promoter.
  • the nucleic acids described above, as described in detail below are introduced into the plant in a nucleic acid construct functionally linked with a flower-specific promoter.
  • genetically modified plants are used which have the highest expression rate of a ketolase in fruits.
  • the gene expression of the ketolase takes place under the control of a fruit-specific promoter.
  • the nucleic acids described above, as described in detail below are introduced into the plant in a nucleic acid construct functionally linked with a fruit-specific promoter.
  • genetically modified plants are used which have the highest expression rate of a ketolase in seeds.
  • the gene expression of the ketolase takes place under the control of a seed-specific promoter.
  • the nucleic acids described above, as described in detail below are introduced into the plant in a nucleic acid construct functionally linked with a seed-specific promoter.
  • the targeting in the chrome peaks is carried out by a functionally linked plastid transit peptide.
  • a functionally linked plastid transit peptide The production of genetically modified plants with increased or caused ketolase activity is described as an example.
  • Other activities such as the hydroxylase activity and / or the ⁇ -cyclase activity, can be increased analogously using nucleic acid sequences encoding a hydroxylase or ⁇ -cyclase instead of nucleic acid sequences encoding a ketolase.
  • the transformation can take place individually or through multiple constructs.
  • the transgenic plants are preferably produced by transforming the starting plants, using a nucleic acid construct which contains the nucleic acids described above, encoding a ketolase, which are functionally linked to one or more regulation signals which ensure transcription and translation in plants.
  • nucleic acid constructs in which the coding nucleic acid sequence is functionally linked to one or more regulatory signals which ensure transcription and translation in plants, are also called expression cassettes below.
  • the regulation signals preferably contain one or more promoters which ensure transcription and translation in plants.
  • the expression cassettes contain regulation signals, that is to say regulative nucleic acid sequences, which control the expression of the coding sequence in the host cell.
  • an expression cassette upstream, ie at the 5 'end of the coding sequence, a promoter and downstream, ie at the 3' end, a polyadenylation signal and, if appropriate, further regulatory elements which match the coding sequence for at least one of the above genes described are operatively linked.
  • An operative link is understood to mean the sequential arrangement of promoter, coding sequence, terminator and, if appropriate, further regulatory elements in such a way that each of the regulatory elements can fulfill its function as intended when expressing the coding sequence.
  • the preferred nucleic acid constructs, expression cassettes and vectors for plants and methods for producing transgenic plants and the transgenic plants themselves are described below by way of example.
  • sequences which are preferred, but not limited to, for operative linking are targeting sequences to ensure subcellular localization in the apoplast, in the vacuole, in plastids, in the mitochondrion, in the endoplasmic reticulum (ER), in the cell nucleus, in oil bodies or other compartments and Translation enhancers such as the 5 'leader sequence from the tobacco mosaic virus (Gallie et al., Nucl. Acids Res. 15 (1987), 8693-8711).
  • any promoter which can control the expression of foreign genes in plants is suitable as the promoter of the expression cassette.
  • Constant promoter means those promoters which ensure expression in numerous, preferably all, tissues over a relatively long period of plant development, preferably at all times during plant development.
  • a plant promoter or a plant virus-derived promoter is preferably used.
  • Particularly preferred is the promoter of the 35S transcript of the CaMV cauliflower mosaic virus (Franck et al. (1980) Cell 21: 285-294; Odell et al. (1985) Nature 313: 810-812; Shewmaker et al. (1985) Virology 140: 281-288; Gardner et al. (1986) Plant Mol Biol 6: 221-228), the 19S CaMV promoter (US 5,352,605; WO 84/02913; Benfey et al.
  • TPT triose phosphate translocator
  • Another suitable constitutive promoter is the pds promoter (Pecker et al. (1992) Proc. Natl. Acad. Be USA 89: 4962-4966) or the "Rubisco small subunit (SSU)" promoter (US 4,962,028), the LeguminB Promoter (GenBank Acc. No. X03677), the promoter of nopaline synthase from Agrobacterium, the TR double promoter, the OCS (octopine synthase) promoter from Agrobacterium, the ubiquitin promoter (Holtorf S et al. (1995) Plant Mol Biol 29: 637-649), the ubiquitin 1 promoter (Christensen et al.
  • the expression cassettes can also contain a chemically inducible promoter (review article: Gatz et al. (1997) Annu Rev Plant Physiol Plant Mol Biol 48: 89-108), by means of which the expression of the ketolase gene in the plant is controlled at a specific point in time can.
  • a chemically inducible promoter e.g. the PRP1 promoter (Ward et al. (1993) Plant Mol Biol 22: 361-366), a salicylic acid-inducible promoter (WO 95/19443), a benzenesulfonamide-inducible promoter (EP 0388 186), a tetracycline-inducible promoter Promoter (Gatz et al.
  • promoters that are induced by biotic or abiotic stress such as the pathogen-inducible promoter of the PRP1 gene (Ward et al. (1993) Plant Mol Biol 22: 361-366), the heat-inducible hsp70 or hsp80 Promoter from tomato (US 5,187,267), the cold-inducible alpha-amylase promoter from the potato (WO 96/12814), the light-inducible PPDK promoter or the wound-induced pinII promoter (EP375091).
  • pathogen-inducible promoter of the PRP1 gene Ward et al. (1993) Plant Mol Biol 22: 361-366
  • the heat-inducible hsp70 or hsp80 Promoter from tomato US 5,187,267
  • the cold-inducible alpha-amylase promoter from the potato
  • the light-inducible PPDK promoter or the wound-induced pinII promoter EP375091.
  • Pathogen-inducible promoters include those of genes that are induced as a result of a pathogen attack, such as, for example, genes from PR proteins, SAR proteins, b-1, 3-glucanase, chitinase etc. (for example Redolfi et al. (1983) Neth J Plant Pathol 89: 245-254; Uknes, et al. (1992) The Plant Cell 4: 645-656; Van Loon (1985) Plant Mol Viral 4: 111-116; Marineau et al. (1987) Plant Mol Biol 9 : 335-342; Matton et al. (1987) Molecular Plant-Microbe Interactions 2: 325-342; Somssich et al.
  • suitable promoters are, for example, fruit ripening-specific promoters, such as the fruit ripening-specific promoter from tomato (WO
  • Development-dependent promoters partly include the tissue-specific promoters, since the formation of individual tissues is naturally development-dependent.
  • promoters are particularly preferred which ensure expression in tissues or parts of plants in which, for example, the biosynthesis of ketocarotenoids or their precursors takes place.
  • promoters with specificities for the anthers, ovaries, petals, sepals, flowers, leaves, stems, seeds and roots and combinations thereof.
  • Tuber, storage root or root-specific promoters are, for example, the patatin class I (B33) promoter or the potato cathepsin D inhibitor promoter.
  • Leaf-specific promoters are, for example, the cytosolic promoter
  • FBPase from potato (WO 97/05900), the SSU promoter (small subunit) of Rubisco (ribulose-1, 5-bisphosphate carboxylase) or the ST-LSI promoter from potato (Stockhaus et al. (1989) EMBO J 8: 2445- 2451).
  • Flower-specific promoters are, for example, the phytoene synthase promoter (WO 92/16635) or the promoter of the P-rr gene (WO 98/22593), the AP3 promoter from Arabidopsis thaliana (see Example 5), the CHRC promoter (chromoplast-specific carotenoid-associated protein (CHRC) gene promoter from Cucumis sativus Acc.-No. AF099501, base pair 1 to 1532), the EPSP_Synthase promoter (5-enol-pyruvylshikimate-3-phosphate synthase gene promoter from Petunia hybrida, Acc.-No.
  • CHRC chromoplast-specific carotenoid-associated protein
  • the PDS promoter (Phytoene desaturase gene pro- moter from Solanum lycopersicum, Acc.-No. U46919, base pair 1 to 2078), the DFR-A promoter (dihydroflavonol 4-reductase gene A promoter from Petunia hybrida, Acc.- No. X79723, base pair 32 to 1902) or the FBP1 promoter (Floral Binding Protein 1 gene promoter from Petunia hybrida, Acc.-No. L10115, base pair 52 to 1069).
  • the DFR-A promoter dihydroflavonol 4-reductase gene A promoter from Petunia hybrida, Acc.- No. X79723, base pair 32 to 1902
  • the FBP1 promoter Floral Binding Protein 1 gene promoter from Petunia hybrida, Acc.-No. L10115, base pair 52 to 1069.
  • Anther-specific promoters are, for example, the 5126 promoter (US 5,689,049, US 5,689,051), the glob-1 promoter or the g-zein promoter.
  • Seed-specific promoters are, for example, the ACP05 promoter (acyl carrier protein gene, WO9218634), the promoters AtS1 and AtS3 from Arabidopsis
  • the present invention therefore relates in particular to a nucleic acid construct containing functionally linked a flower-specific or in particular a petal-specific promoter and a nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • An expression cassette is preferably produced by fusing a suitable promoter with a nucleic acid described above, encoding a ketolase, and preferably a nucleic acid inserted between promoter and nucleic acid sequence, which codes for a plastid-specific transit peptide, and a polyadenylation signal according to common recombination and cloning technology. techniques such as those described in T. Maniatis, EF Fritsch and J.
  • nucleic acids encoding a plastid transit peptide ensure localization in plastids and in particular in chromoplasts.
  • Expression cassettes can also be used, the nucleic acid sequence of which codes for a ketolase fusion protein, part of the fusion protein being a transit peptide which controls the translocation of the polypeptide.
  • Preferred transit peptides are preferred for the chromoplasts, which are cleaved enzymatically from the ketolase part after translocation of the ketolase into the chromoplasts.
  • the transit peptide which is derived from the plastid Nicotiana tabacum transketolase or another transit peptide (for example the transit peptide of the small subunit of the Rubisco (rbcS) or the ferredoxin NADP oxidoreductase as well as the isopentenyl pyrophosphate isomerase-2) or its functional equivalent is particularly preferred ,
  • Nucleic acid sequences of three cassettes of the plastid transit peptide of plastid transketolase from tobacco in three reading frames are particularly preferred as Kpnl / BamHI fragments with an ATG codon in the Ncol interface:
  • plastid transit peptide examples include the transit peptide of the plastid
  • IPP-2 X ren isopentenyl pyrophosphate isomerase-2
  • rbcS ribulose bisphosphate carboxylase
  • nucleic acids according to the invention can be produced synthetically or obtained naturally or contain a mixture of synthetic and natural nucleic acid constituents, and can consist of different heterologous gene segments from different organisms.
  • various DNA fragments can be manipulated in order to obtain a nucleotide sequence which expediently reads in the correct direction and which is equipped with a correct reading frame.
  • adapters or linkers can be attached to the fragments.
  • the promoter and terminator regions can expediently be provided in the transcription direction with a linker or polylinker which contains one or more restriction sites for the insertion of this sequence.
  • the linker has 1 to 10, usually 1 to 8, preferably 2 to 6, restriction sites.
  • the linker has a size of less than 100 bp, often less than 60 bp, but at least 5 bp within the regulatory ranges.
  • the promoter can be native or homologous as well as foreign or heterologous to the host plant.
  • the expression cassette preferably contains the promoter, a coding nucleic acid sequence or a nucleic acid construct and a region for the transcriptional termination in the 5'-3 'transcription direction. Different termination areas are interchangeable.
  • Examples of a terminator are the 35S terminator (Guerineau et al. (1988) Nucl Acids Res. 16: 11380), the nos terminator (Depicker A, Stachel S, Dhaese P, Zambryski P, Goodman HM. Nopaline synthase: transcript mapping and DNA sequence. J Mol Appl Genet. 1982; 1 (6): 561-73) or the ocs terminator (Gielen, J, de Beuckeleer, M, Seurinck, J, Debroek, H, de Greve, H , Lemmers, M, van Montagu, M,
  • Manipulations which provide suitable restriction sites or which remove superfluous DNA or restriction sites can also be used. Where insertions, deletions or substitutions such as, for example, transitions and transversions come into question, w ' tro mutagenesis, "primer repair", restriction or ligation can be used.
  • Preferred polyadenylation signals are plant polyadenylation signals, preferably those which essentially contain T-DNA polyadenylation signals from Agrobacterium tumefaciens, in particular gene 3 of T-DNA (octopine synthase) from Ti Plasmids correspond to pTiACH ⁇ (Gielen et al., EMBO J. 3 (1984), 835 ff) or functional equivalents.
  • transformation The transfer of foreign genes into the genome of a plant is called transformation.
  • Suitable methods for the transformation of plants are protoplast transformation by polyethylene glycol-induced DNA uptake, the biolistic method with the gene gun - the so-called "particle bombardment” method, electroporation, the incubation of dry embryos in DNA-containing solution, the Microinjection and the Agrobacterium-mediated gene transfer described above.
  • the methods mentioned are described, for example, in B. Jenes et al., Techniques for Gene Transfer, in: Transgenic Plants, Vol. 1, Engineering and Utilization, published by S.D. Kung and R. Wu, Academic Press (1993), 128-143 and in Potrykus, Annu. Rev. Plant Physiol. Plant Molec. Biol. 42 (1991), 205-225).
  • the construct to be expressed is preferably cloned into a vector which is suitable for transforming Agrobacterium tumefaciens, for example pBin19 (Bevan et al., Nucl. Acids Res. 12 (1984), 8711) or particularly preferably pSUN2, pSUN3, pSUN4 or pSUN5 (WO 02/00900).
  • Agrobacteria transformed with an expression plasmid can be used in a known manner to transform plants, e.g. by bathing wounded leaves or leaf pieces in an agrobacterial solution and then cultivating them in suitable media.
  • the fused expression cassette which expresses a ketolase is cloned into a vector, for example pBin19 or in particular pSUN5 and pSUN3, which is suitable for being transformed into Agrobacterium tumefaciens.
  • Agrobacteria transformed with such a vector can then be used in a known manner to transform plants, in particular cultivated plants. are used, for example, by bathing wounded leaves or leaf pieces in an agrobacterial solution and then cultivating them in suitable media.
  • transgenic plants can be regenerated in a known manner which contain a gene integrated into the expression cassette for the expression of a nucleic acid encoding a ketolase.
  • an expression cassette is inserted as an insert in a recombinant vector whose vector DNA contains additional functional regulation signals, for example sequences for replication or integration.
  • additional functional regulation signals for example sequences for replication or integration.
  • Suitable vectors are inter alia in "Methods in Plant Molecular Biology and Biotechnology" (CRC Press), Chap. 6/7, pp. 71-119 (1993).
  • the expression cassettes can be cloned into suitable vectors that allow their proliferation, for example in E. coli.
  • suitable cloning vectors include PJIT117 (Guerineau et al. (1988) Nucl. Acids Res. 16: 11380), pBR332, pUC series, M13mp series and pACYC184.
  • Binary vectors which can replicate both in E. coli and in agrobacteria are particularly suitable.
  • Hydroxylase or ⁇ -cyclase are preferably incorporated into expression constructs containing, under the genetic control of regulatory nucleic acid sequences, a nucleic acid sequence coding for an enzyme according to the invention; and vectors comprising at least one of these expression constructs.
  • Such constructs according to the invention preferably comprise a promoter 5'-upstream of the respective coding sequence and a terminator sequence 3'-downstream and, if appropriate, further customary regulatory elements, in each case operatively linked to the coding sequence.
  • An “operative linkage” is understood to mean the sequential arrangement of promoter, coding sequence, terminator and, if appropriate, further regulatory elements in such a way that each of the regulatory elements can perform its function as intended when expressing the coding sequence.
  • sequences which can be linked operatively are targeting sequences as well
  • Translation enhancers include selectable markers, amplification signals, origins of replication and the like.
  • the natural regulatory sequence can still be present before the actual structural gene. This natural regulation can possibly be switched off by genetic modification and the
  • genes can be increased or decreased.
  • the gene construct can also have a simpler structure, ie no additional regulation signals are inserted in front of the structural gene and the natural promoter with its regulation is not removed. Instead, the natural regulatory sequence is mutated so that regulation no longer takes place and gene expression is increased or decreased.
  • the nucleic acid sequences can be contained in one or more copies in the gene construct.
  • Examples of useful promoters in microorganisms are: cos-, tac-, trp-, tet-, trp-tet-, Ipp-, lac-, Ipp-lac-, laclq-, T7-, T5-, T3-, gal- , trc, ara, SP6, lambda PR or in the lambda PL promoter, which are advantageously used in gram-negative bacteria; as well as the gram-positive promoters amy and SPO2 or the yeast promoters ADC1, MFa, AC, P-60, CYC1, GAPDH.
  • inducible promoters such as, for example, light and in particular temperature-inducible promoters, such as the P r P r promoter
  • inducible promoters such as, for example, light and in particular temperature-inducible promoters, such as the P r P r promoter
  • all natural prorriotors with their regulatory sequences can be used.
  • synthetic promoters can also be used advantageously.
  • the regulatory sequences mentioned are intended to enable the targeted expression of the nucleic acid sequences and the protein expression. Depending on the host organism, this can mean, for example, that the gene is only expressed or overexpressed after induction, or that it is expressed and / or overexpressed immediately.
  • the regulatory sequences or factors can preferably have a positive influence on the expression and thereby increase or decrease it.
  • the regulatory elements can advantageously be strengthened at the transcription level by using strong transcription signals such as promoters and / or "enhancers".
  • an increase in translation is also possible, for example, by improving the stability of the mRNA.
  • An expression cassette is produced by fusing a suitable promoter with the nucleic acid sequences described above, encoding a ketolase, ⁇ -hydroxylase or ⁇ -cyclase and a terminator or polyadenylation signal.
  • Common recombination and cloning techniques are used, such as those described in T. Maniatis, E.F. Fritsch and J. Sambrook, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989) and in T.J. Silhavy, M.L. Berman and L.W. Enquist, Experiments with Gene Fusions, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1984) and in Ausu, F.M. et al., Current Protocols in Molecular Biology, Greene Publishing Assoc. and Wiley Interscience (1987).
  • the recombinant nucleic acid construct or gene construct is advantageously inserted into a host-specific vector which enables optimal expression of the genes in the host.
  • Vectors are well known to those skilled in the art and can be found, for example, in "Cloning Vectors" (Pouwels PH et al., Ed., Elsevier, Amsterdam-New York-Oxford, 1985).
  • vectors also include all other vectors known to the person skilled in the art, such as, for example, phages, viruses such as SV40, CMV, baculovirus and adevirus, transposons, IS elements, phasmids, cosmids, and linear or circular Understand DNA. These vectors can be replicated autonomously in the host organism or replicated chromosomally.
  • fusion expression vectors such as pGEX (Pharmacia Biotech ine; Smith, DB and Johnson, KS (1988) Gene 67: 31-40), pMAL (New England Biolabs, Beverly, MA) and pRIT 5 (Pharmacia, Piscataway, NJ) which glutathione-S-transferase (GST), maltose E-binding protein or protein A is fused to the recombinant target protein.
  • GST glutathione-S-transferase
  • Non-fusion protein expression vectors such as pTrc (Amann et al., (1988) Gene 69: 301-315) and pET 11d (Studier et al. Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, California (19g ⁇ ) 60-89) or pBluescript and pUC vectors.
  • yeast expression vector for expression in the yeast S. cerevisiae such as pYepSed (Baldari et al., (1987) Embo J. 6: 229-234), pMFa (Kurjan and Herskowitz (1982) Cell 30: 933-943) , pJRY88 (Schultz et al. (1987) Gene 54: 113-123) and pYES2 (Invitrogen Corporation, San Diego, CA).
  • Vectors and methods of constructing vectors suitable for use in other fungi such as filamentous fungi include those described in detail in: van den Hondel, C.A.M.J.J. & Punt, P.J. (1991) "Gene transfer Systems and vector development for filamentous fungi, in: Applied Molecular Genetics of Fungi, J.F. Peberdy et al., Eds., Pp. 1-28, Cambridge University Press: Cambridge.
  • Baculovirus vectors available for expression of proteins in cultured insect cells include the pAc series (Smith et al., (1983) Mol. Cell Biol .. 3: 2156-2165) and pVL series (Lucklow and Summers (1989) Virology 170: 31-39).
  • recombinant constructs according to the invention described above are advantageously introduced and expressed in a suitable host system.
  • Common cloning and transfection methods known to the person skilled in the art such as, for example, co-precipitation, protoplast fusion, electroporation, retroviral transfection and the like, are preferably used to bring the nucleic acids mentioned into expression in the respective expression system. Suitable systems are described, for example, in Current Protocols in Molecular Biology, F. Ausubel et al., Ed., Wiley Interscience, New York 1997.
  • marker genes which are also contained in the vector or in the expression cassette.
  • marker genes are genes for antibiotic resistance and for enzymes which catalyze a coloring reaction which stains the transformed cell. These can then be selected using automatic cell sorting.
  • Microorganisms successfully transformed with a vector and carrying an appropriate antibiotic resistance gene can be selected using appropriate antibiotic-containing media or nutrient media.
  • Marker proteins that are presented on the cell surface can be used for selection by means of affinity chromatography.
  • the invention further relates to a method for producing genetically modified organisms, characterized in that a nucleic acid construct comprising functionally linked a promoter and nucleic acids encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which a Identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2, and optionally introduces a terminator into the genome of the starting organism or extrachromosomally into the starting organism.
  • the invention further relates to the genetically modified organisms, the genetic modification being the activity of a ketolase
  • ketolase activity increased after A or caused after B is caused by a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • the ketolase activity is increased or caused compared to the wild type, preferably by increasing or causing the gene expression of a nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • the gene expression of a nucleic acid, coding for a ketolase is increased or caused by introducing nucleic acids, coding for a ketolase, into the plants and thus preferably for overexpression or transgenic expression of nucleic acids, coding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
  • the invention further relates to a genetically modified organism containing at least one transgenic nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO.
  • the invention further relates to a genetically modified organism containing at least two endogenous nucleic acids encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has. This is the case if the starting organism has an endogenous ketolase and the endogenous ketolase is overexpressed.
  • genetically modified organisms additionally have an increased hydroxlase activity and / or ⁇ -cyclase activity compared to a wild-type organism. Further preferred embodiments are described above in the method according to the invention.
  • organisms are preferably understood to mean organisms which, as wild-type or starting organisms, naturally or by genetic complementation and / or reorganization of the metabolic pathways, are capable of producing carotenoids, in particular ⁇ -carotene and / or zeaxanthin and / or neoxanthine and / or violaxanthin and / or to produce lutein.
  • Further preferred organisms already have hydroxylase activity as wild-type or starting organisms and are therefore capable of producing zeaxanthin as wild-type or starting organisms.
  • Preferred organisms are plants or microorganisms, such as bacteria, yeasts, algae or fungi.
  • Both bacteria can be used as bacteria which, due to the introduction of genes of the carotenoid biosynthesis of a carotenoid-producing organism, must be able to synthesize xanthophylls, such as, for example, bacteria of the genus Escherichia, which, for example, contain crt genes from Erwinia, and also bacteria which are capable of synthesizing xanthophylls, such as, for example, bacteria of the genus Erwinia, Agrobacterium , Flavobacterium, Alcaligenes, Paracoccus, Nostoc or cyanobacteria of the genus Synechocystis.
  • xanthophylls such as, for example, bacteria of the genus Escherichia, which, for example, contain crt genes from Erwinia
  • bacteria which are capable of synthesizing xanthophylls such as, for example, bacteria of the genus Erwinia, Agrobacterium , Flavobacter
  • Preferred bacteria are Escherichia coli, .Erwinia herbicola, Erwinia uredovora, Agrobacterium aurantiacum, Alcaligenes sp. PC-1, Flavobacterium sp. strain R1534, the Cyanobacterium Synechocystis sp. PCC6803, Paracoccus marcusii or Paracoccus carotinifaciens.
  • yeasts are Candida, Saccharomyces, Hansenula, Pichia or Phaffia. Particularly preferred yeasts are Xanthophyllomyces dendrorhous or Phaffia rhodozyma.
  • Preferred fungi are Aspergillus, Trichoderma, Ashbya, Neurospora, Blakeslea, Phycomyces, Fusarium or others in Indian Chem. Engr. Section B. Vol. 37, No. 1, 2
  • Preferred algae are green algae, such as algae of the genus Haematococcus, Phaedactylum tricornatum, Volvox or Dunaliella. Particularly preferred algae are Haematococcus puvialis or Dunaliella bardawil.
  • Particularly preferred plants are plants selected from the Ranuncu-laceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Lina- ceae, Vitaceae, Brassicaceae, Cucurbitaceae, Primulaceae, Caryophyllaceae, Amaranthaceae, Geraniaceaeaceae, Gentianaceaeaea, Gentianaceae , • Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Orchidaceae, Malvaceae, liliaceae or Lamiaceae.
  • Very particularly preferred plants are selected from the group of the plant species chard, tagetes errectta, tagetes patula, acacia, aconite, adonis, ami ca, Aquilegia, Aster, Astragalus, Bignonia, Calenduia, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Foria, Forsy Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillea, Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kerria, Laburnum, Lathyrus, Leonto
  • Very particularly preferred genetically modified plants are selected from the plant genera Marigold, Tagetes erecta, Tagetes patula, Adonis, Lycopersicon; Rosa, Calenduia, Physalis, Medicago, Helianthus, Chrysanthemum, Aster, Tulipa, Narcissus, Petunia, Geranium or Tropaeolum, the genetically modified plant containing at least one transgenic nucleic acid, coding for a ketolase.
  • the present invention further relates to the transgenic plants, their reproductive material and their plant cells, tissue or parts, in particular their fruits, seeds, flowers and petals.
  • the genetically modified plants can be used to produce ketocarotenoids, in particular astaxanthin.
  • Genetically modified organisms according to the invention which can be consumed by humans and animals, in particular plants or parts of plants, such as in particular petals with an increased content of ketocarotenoids, in particular astaxanthin, can also be used, for example, directly or after processing known per se as foods or feeds or as feed and food supplements become. Furthermore, the genetically modified organisms can be used for the production of ketocarotenoid-containing extracts of the organisms and / or for the production of feed and food supplements.
  • the genetically modified organisms have an increased ketocarotenoid content compared to the wild type.
  • An increased ketocarotenoid content is generally understood to mean an increased total ketocarotenoid content.
  • ketocarotenoids is also understood to mean, in particular, a changed content of the preferred ketocarotenoids, without the total carotenoid content necessarily having to be increased.
  • the genetically modified plants according to the invention have an increased astaxanthin content compared to the wild type.
  • an increased content is also understood to mean a caused content of ketocarotenoids or astaxanthin.
  • the invention further relates to the new ketolases and the new nucleic acids encoding them.
  • the invention relates to ketolases containing the amino acid sequence SEQ. ID. NO. 8 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 8, with the proviso that the amino acid sequences SEQ ID NO: 4 is not included.
  • the sequence SEQ ID NO: 4, as mentioned above, is annotated as a putative protein in databases.
  • the invention further relates to ketolases containing the amino acid sequence SEQ. ID. NO. 6 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70% on amino acid level with the sequence SEQ. ID. NO. 6 has.
  • the sequence SEQ ID NO: 6, as mentioned above, is not annotated in databases.
  • the invention relates to ketolases containing the amino acid sequence SEQ. ID. NO. 12 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 12, with the proviso that the amino acid sequences SEQ ID NO: 6 is not included.
  • the invention further relates to ketolases containing the amino acid sequence SEQ. ID. NO. 49 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 50%, preferably at least 60%, particularly preferably at least 70%, more preferably at least 80%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 49, with the proviso that the amino acid sequences SEQ ID NO: 47 is not included.
  • the sequence SEQ ID NO: 47 is, as mentioned above, annotated as a putative protein in databases.
  • the invention further relates to nucleic acids encoding a protein described above, with the proviso that the nucleic acid does not contain the sequence SEQ ID NO: 5.
  • a protein containing the amino acid sequence SEQ. ID. NO. 4 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids and having an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 4 and has the property of a ketolase has a property as a ketolase.
  • the invention therefore also relates to the use of a protein containing the amino acid sequence SEQ. ID. NO. 4 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the SEQ sequence. ID. NO. 4 and has the property of a ketolase as a ketolase.
  • a protein containing the amino acid sequence SEQ. ID. NO. 6 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has an identity of at least 65%, preferably at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the SEQ sequence. ID. NO. 6 and has the property of a ketolase, has a property as a ketolase.
  • the invention therefore also relates to the use of a protein containing the amino acid sequence SEQ. ID. NO. 6 or one of this sequence by substitution,
  • Insertion or deletion of amino acid-derived sequence which has an identity of at least 65%, preferably at least 70%, preferably at least 75%, x particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level the sequence SEQ. ID. NO. 6 and has the property of a ketolase as a ketolase.
  • a protein containing the amino acid sequence SEQ. ID. NO. 47 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has an identity of at least 50%, preferably at least 60%, preferably at least 70%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90% , more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 47 and has the property of a ketolase, has a property as a ketolase.
  • the invention therefore also relates to the use of a protein containing the amino acid sequence SEQ. ID. NO. 47 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 50%, preferably at least 60%, preferably at least 70%, particularly preferably at least 80%, more preferably at least 85% at least 90%, more preferably at least 95% at the amino acid level with the SEQ sequence. ID. NO. 47 and has the property of a ketolase as ketolase.
  • the process according to the invention provides a higher amount of ketocarotenoids, in particular astaxanthin with a lower amount of hydroxylated by-products.
  • the sequencing of recombinant DNA molecules was carried out using a laser fluorescence DNA sequencer from Licor (distributed by MWG Biotech, Ebersbach) according to the
  • the DNA required for the NOST ketolase from Nostoc sp. PCC 7120 coded was by means of PCR from Nostoc sp. PCC 7120 (strain of the "Pasteur Culture Collection of Cyanobacterium”) amplified.
  • the bacterial cells were pelleted from a 10 ml liquid culture by centrifugation at 8,000 rpm for 10 minutes. The bacterial cells were then crushed and ground in liquid nitrogen using a mortar. The cell material was resuspended in 1 ml of 10 mM Tris HCl (pH 7.5) and transferred to an Eppendorf reaction vessel (2 ml volume). After adding 100 ⁇ l Proteinase K (concentration: 20 mg / ml), the cell suspension was incubated for 3 hours at 37 ° C. The suspension was then extracted with 500 ⁇ l of phenol. After centrifugation at 13,000 rpm for ⁇ minutes, the upper, aqueous phase was transferred to a new 2 ml Eppendorf reaction vessel.
  • the extraction with phenol was repeated 3 times.
  • the DNA was precipitated by adding 1/10 volume of 3 M sodium acetate (pH 5.2) and 0.6 volume of isopropanol and then washed with 70% ethanol.
  • the DNA pellet was dried at room temperature, taken up in 25 ⁇ l of water and dissolved with heating to 65 ° C.
  • the nucleic acid encoding a ketolase from Nostoc PCC 7120 was determined by means of a "polymerase chain reaction” (PCR) from Nostoc sp.
  • PCC 7120 was amplified using a sense-specific primer (NOSTF, SEQ ID No. 19) and an antisense-specific primer (NOSTG SEQ ID No. 20).
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 ⁇ l reaction mixture which contained:
  • the PCR was carried out under the following cycle conditions: 1X 94 ° C 2 minutes 35X 94 ° C 1 minute 55 ° C 1 minutes 72 ° C 3 minutes
  • PCR amplification with SEQ ID No. 19 and SEQ ID No. 20 resulted in an 805 bp fragment that codes for a protein consisting of the entire primary sequence (SEQ ID No. 21).
  • the amplificate was cloned into the PCR cloning vector pGEM-T (Promega) and the clone pNOSTF-G was obtained.
  • This clone pNOSTF-G was therefore used for the cloning into the expression vector pJIT117 (Guerineau et al. I g88, Nucl. Acids Res. 16: 11380). Cloning was carried out by isolating the 799 bp Sphl fragment from pNOSTF-G and ligation into the Sphl cut vector pJIT117.
  • the clone that is the ketolase from Nostoc sp. PCC 7120, in the correct orientation as an N-terminal translational fusion with the rbcS transit peptide, is called pJNOST.
  • PMCL-CrtYlBZ / idi / gps was constructed in three steps using the intermediate stages pMCL-CrtYlBZ and pMCL-CrtYlBZ / idi.
  • the plasmid pMCL200 compatible with high-copy-number vectors was used as the vector (Nakano, Y., Yoshida, Y., Yamashita, Y. and Koga, T .; Construction of a series of pACYC-derived plasmid vectors; Gene 162 ( 1995), 157-158).
  • Example 2.1. Construction of pMCL-CrtYlBZ
  • the biosynthetic genes crtY, crtB, crtl and crtZ come from the bacterium Erwinia ure- dovora and were amplified by PCR.
  • Erwinia uredovora genomic DNA (DSM 30080) was prepared by the German Collection of Microorganisms and Cell Culture (DSMZ, Braunschweig) as part of a service.
  • the PCR reaction was carried out according to the manufacturer's instructions (Röche, Long Template PCR: Procedure for amplification of 5-20 kb targets with the expand long template PCR system).
  • the PCR conditions for the amplification of the Erwinia uredovora biosynthesis cluster were as follows:
  • the plasmid pCR2.1-CrtYIBZ was cut Sall and Hindill, the resulting Sall / Hindlll fragment isolated and transferred by ligation into the Sall / Hindlll cut vector pMCL200.
  • the Sall / Hindlll fragment from pCR2.1-CrtYIBZ cloned in pMCL 200 is 4624 bp long, codes for the genes CrtY, CrtI, crtB and CrtZ and corresponds to the sequence from positions 2295 to 6918 in D90087 (SEQ ID No. 24).
  • the resulting clone is called pMCL-CrtYlBZ.
  • Example 2.2 Construction of pMCL-CrtYlBZ / idi
  • the gene / d / ' (isopentenyl diphosphate isomerase; IPP isomerase) was amplified from E coli by means of PCR.
  • the nucleic acid encoding the entire / cf gene with idi promoter and ribosome binding site was extracted from E. coli by means of "polymerase chain reaction” (PCR) using a sense-specific primer (5'-idi SEQ ID No. 28) and an antisense-specific primer (3'-idi SEQ ID No.29).
  • PCR polymerase chain reaction
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA was carried out in a 50 ⁇ l reaction mixture, which contained:
  • the PCR was carried out under the following cycle conditions: 1X 94 ° C 2 minutes 20X 94 ° C 1 minute
  • PCR amplification with SEQ ID No. 28 and SEQ ID No. 29 resulted in a 679 bp fragment coding for a protein consisting of the entire primary sequence (SEQ ID No. 30).
  • the amplificate was cloned into the PCR cloning vector pCR2.1 (Invitrogen) and the clone pCR2.1-idi was obtained.
  • Sequencing of the clone pCR2.1-idi confirmed a sequence that does not differ from the published sequence AE000372 in position 8774 to position 9440.
  • This region comprises the promoter region, the potential ribosome binding site and the entire "open reading frame" for the IPP isomerase.
  • the fragment cloned into pCR2.1-idi has a total length of 679 bp by inserting an Xhol site at the 5 'end and a SalI site at the 3' end of the gene.
  • This clone was therefore used for the cloning of the / oY gene in the vector pMCL-CrtYlBZ.
  • the cloning was carried out by isolating the Xhol / Sall fragment from pCR2.1-idi and ligating into the Xhol / Sall cut vector pMCL-CrtYlBZ.
  • the resulting clone is called pMCL-CrtYlBZ / idi.
  • Example 2.3 Construction of pMCL-CrtYlBZ / idi / gps
  • the gene gps (geranylgeranyl pyrophosphate synthase; GGPP synthase) was amplified from Archaeoglobus fulgidus by means of PCR.
  • the DNA of Archaeoglobus fulgidus was prepared by the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig) as part of a service.
  • the PCR conditions were as follows: The PCR for the amplification of the DNA, which codes for a GGPP synthase protein consisting of the entire primary sequence, was carried out in a 50 ⁇ l reaction mixture which contained:
  • the PCR was carried out under the following cycle conditions:
  • SEQ ID No. 32 and SEQ ID No. 33 amplified DNA fragments were eluted from the agarose gel using methods known per se and cut with the restriction enzymes Ncol and Hindill. This results in a 962 bp fragment which codes for a protein consisting of the entire primary sequence (SEQ ID No. 34).
  • Ncol / HindIII cut amplificate was cloned into the vector pCB97-30 and the clone pCB-gps was obtained.
  • Sequencing of the clone pCB-gps confirmed a sequence for the GGPP synthase from A. fulgidus, which differs from the published sequence AF120272 in one nucleotide.
  • the second codon of the GGPP synthase was changed by inserting an Ncol site in the gps gene.
  • CTG position 4-6
  • this second codon was changed to GTG, which codes for valine.
  • the clone pCB-gps was therefore used for the cloning of the gps gene into the vector pMCL-CrtYlBZ / idi.
  • the cloning was carried out by isolating the Kpnl / Xhol fragment from pCB-gps and ligation into the Kpnl and Xhol cut vector pMCL-CrtYlBZ / idi.
  • the cloned Kpnl / Xhol fragment (SEQ ID No.
  • GGPP synthase 34 carries the Prm16 promoter together with a minimal 5 'UTR sequence of rbcL, the first 6 codons of rbcL, which extend the GGPP synthase N-terminally, and 3 'from the gps gene the psbA sequence.
  • the N-terminus of the GGPP synthase thus has the changed amino acid sequence Met-Thr-Pro-Gln-Thr-Ala-Met instead of the natural amino acid sequence with Met-Leu-Lys-Glu (amino acid 1 to 4 from AF120272) -Val-Lys- GIu.
  • the recombinant GGPP synthase starting with Lys in position 3 (in AF120272), is identical and has no further changes in the amino acid sequence.
  • the rbcL and psbA sequences were based on a reference according to Eibl et al. (Plant J. 1. (I 99), 1-13).
  • the resulting clone is called pMCL-CrtYlBZ / idi / gps.
  • E. co // strains were produced which are capable of producing zeaxanthin by heterologous complementation.
  • Strains of E. coli TOP10 were used as host cells for the complementation experiments with the plasmids pNOSTF-G and pMCL-CrtYlBZ / idi / gps.
  • the plasmid pMCL-CrtYlBZ / idi / gps was constructed in order to produce E. co // strains which enable the synthesis of zeaxanthin in high concentrations.
  • the plasmid carries the genes crtY, crtB, crtl and crtY from Erwinia uredovora, the gene gps (for geranylgeranyl pyrophoshate synthastase) from Archaeoglobus fulgidus and the gene / ⁇ / (isopentenyl diphosphate isomerase) from E. coli. Limiting steps for a high accumulation of carotenoids and their biosynthetic precursors were eliminated with this construct.
  • the cells were extracted with acetone, the organic solvent was evaporated to dryness and the carotenoids were separated by means of HPLC on a C30 column. The following procedural conditions were set.
  • the spectra were determined directly from the elution peaks using a photodiode array detector.
  • the isolated substances were identified by their absorption spectra and their retention times in comparison to standard samples.
  • Figure 1 shows the chromatographic analysis of a sample obtained from an E. co // strain transformed with pNOSTF-G and pMCL-CrtYlBZ / idi / gps. It appears, that this strain can synthesize various ketocarotenoids due to the heterologous complementation. With increasing retention time, astaxanthin (peak 1), adonirubin (peak 2) and canthaxanthin (peak 3) are eluted.
  • a E. coli strain was produced as a comparative example, which contains a ketolase from Haematococcus pluvialis Flotow em. Will expressed.
  • the cDNA was used for the entire primary sequence of the ketolase from Haematococcus pluvialis Flotow em. Wille coded amplified and cloned into the same expression vector according to Example 1.
  • the cDNA coding for the ketolase from Haematococcus pluvialis was amplified by means of PCR from Haematococcus pluvialis (strain 192.80 from the "Collection of algal cultures of the University of Göttingen") suspension culture.
  • RNA For the preparation of total RNA from a suspension culture of Haematococcus pluvialis (strain 192.80), which with indirect daylight at room temperature for 2 weeks in Haematococcus medium (1.2 g / l sodium acetate, 2 g / l yeast extract, 0.2 g / l MgCI2x6H2O , 0.02 CaCI2x2H2O; pH 6.8; after autoclaving 400 mg / l L-Asparagine, 10 mg / l FeSO4xH2O) had been grown, the cells were harvested, frozen in liquid nitrogen and pulverized in a mortar.
  • Haematococcus pluvialis strain 192.80
  • RNA For the cDNA synthesis, 2.5 ⁇ g of total RNA were denatured for 10 min at 60_C, cooled on ice for 2 min and used using a cDNA kit (ready-to-go-you-prime-beads, Pharmacia Biotech) according to the manufacturer's instructions of an antisense-specific primer PR1 (gcaagctcga cagctacaaa cc) was rewritten in cDNA.
  • a cDNA kit ready-to-go-you-prime-beads, Pharmacia Biotech
  • the nucleic acid encoding a kematolase from Haematococcus pluvialis was amplified by means of a polymerase chain reaction (PCR) from Haematococcus pluvialis using a sense-specific primer PR2 (gaagcatgca gctagcagcg acag) and an antisense-specific primer PR1.
  • PCR polymerase chain reaction
  • the PCR conditions were as follows:
  • the PCR for the amplification of the cDNA which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 ml reaction mixture which contained:
  • the PCR was carried out under the following cycle conditions:
  • the PCR amplification with PR1 and PR2 resulted in a 1155 bp fragment consisting encodes a protein consisting of the entire primary sequence: gaagcatgca gctagcagcg acagtaatgt tggagcagct taccggaagc gctgaggcac 60 tcaaggagaa ggagaaggag gttgcaggca gctctgacgt gtgtaca tgggcgaccc 120 agtactcgct tccgtcagag gagtcagacg cggccccc gggactgaag aatgcctaca 180 agccaccaccacc ttccgacaca aagggcatca caatggcgct agctcatc ggctctggg 240 ccgcagtgttt c
  • the amplificate was cloned into the PCR cloning vector pGEM-Teasy (Promega) and the clone pGKETO2 was obtained.
  • This clone was used for the cloning in the expression vector described in Example 1.
  • the cloning was carried out analogously to that described in Example 1.
  • the transformation of the E. coli strains, their cultivation and the analysis of the carotenoid profile were carried out as described in Example 3.
  • Figure 2 shows the chromatographic analysis of a sample obtained from an E. co // strain transformed with this expression vector and pMCL-CrtYlBZ / idi / gps.
  • a ketolase from Haematococcus pluvialis as described for example in EP 725137, elute with increasing retention time astaxanthin (peak 1), adonixanthin (peak 2) and unreacted zeaxanthin (peak 3).
  • This carotenoid profile has already been described in EP 0725137.
  • Table 1 shows a comparison of the bacterially produced amounts of carotenoids:
  • Table 1 Comparison of the bacterial ketocarotenoid synthesis using two different ketolases, the NOST ketolase from Nostoc sp. PCC7120 (Example 3) and the ketolase from Haematococcus pluvialis as a comparative example (Example 3.1). Amounts of carotenoids are given in ng / ml culture fluid.
  • ketolase from Nostoc sp. Strain PCC7120 leads to a carotenoid pattern, which differs significantly from the carotenoid pattern after expression of a ketolase from Haematococcus pluvialis. While the keto lens from the prior art provides the desired ketocarotenoid astaxanthin only incompletely, astaxanthin is the main product when using the ketolase according to the invention. In the process according to the invention, hydroxylated by-products occur in a significantly smaller amount.
  • the expression of the NOST ketolase from Nostoc sp. PCC7120 in Lesculentum and in Tagetes erecta was carried out under control of the constitutive promoter FNR (ferredoxin-NADPH-oxidoreductase, database entry AB011474 position 70127 to 69493; WO03 / 006660) from Arabidopsis thallana.
  • FNR constitutive promoter
  • the FNR gene begins at base pair 69492 and is annotated with "ferredoxin-NADP + reductase”. Expression was carried out using the pea transit peptide rbcS (Anderson et al. 1986, Biochem J. 240: 709-715).
  • the DNA fragment containing the FNR promoter region from Arabidopsis thallana was PCR-analyzed using genomic DNA (isolated from Arabidopsis thallana according to standard methods) as well as the primers FNR-A (SEQ ID No.38) and FNR-B (SEQ ID No. 39).
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which contains the FNR promoter fragment FNR # 1), was carried out in a 50 ⁇ l reaction mixture which contained: 100 ng genomic DNA from A.thaliana 0.25 mM dNTPs 0.2 mM FNR-A (SEQ ID No. 38) 0.2 mM FNR-B (SEQ ID No. 39) - 5 ⁇ l IOX PCR buffer (Stratagene)
  • the PCR was carried out under the following cycle conditions:
  • the 647 bp amplificate was determined using standard methods in the PCR
  • Cloning vector pCR 2.1 (Invitrogen) cloned and the plasmid pFNR # 1 obtained.
  • Sequencing of clone pFNR # 1 confirmed a sequence which corresponds to a sequence section on chromosome 5 of Arabidopsis thaliana (database entry AB011474; WO03 / 006660) from position 70127 to 6g4g3.
  • the FNR gene begins - at base pair 6g4 2 and is annotated with "ferredoxin-NADP + reductase".
  • pFNR was therefore used for cloning into the expression vector pJIT117 (Guerineau et al. 1988, Nucl. Acids Res. 16: 11380).
  • the cloning was carried out by isolating the 637 bp Sacl-Hindlll fragment from pFNR # 1 (partial Sacl hydrolysis) and ligating into the Sacl-Hindlll cut vector pJIT117.
  • the clone that contains the promoter FNR # 1 instead of the original promoter d35S is called pJITFNR.
  • the 799 bp SpHI fragment NOSTF-G (described in Example 1) was cut into the SpHI vector pJITFNR cloned.
  • the clone that contains the fragment NOSTF-G in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJFNRNOST.
  • An expression cassette for the Agrobacterium -mediated transformation of the ketolase from Nostoc into lesculentum was produced using the binary vector pSUN3 (WO0200900).
  • fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP fragment the rbcS transit peptide from pea (194 bp), fragment Nost Ketolase CDS (777 bp) the entire primary sequence coding for the Nostoc Ketolase, fragment 35S Term (746 bp) the polyadenylation signal of CaMV.
  • An expression cassette for the Agrobacterium-vet rMeWe transformation of the expression vector with the ketolase from Nostoc in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00900).
  • fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS transit peptide the rbcS transit peptide from pea (1 g4 bp), fragment Nost ketolase (777 bp) the entire primary sequence, coding for the nostoc ketolase, fragment 35S Terminator (746 bp) the CaMV polyadenylation signal.
  • the expression of the ketolase from Nostoc in L. esculentum and Tagetes erecta was carried out with the transit peptide rbcS from pea (Anderson et al. 1986, Biochem J. 240: 709-715).
  • the expression was carried out under the control of a modified version AP3P of the flower-specific promoter AP3 from Arabidopsis thaliana (AL132971: nucleotide region 9298-10200; Hill et al. (1998) Development 125: 1711-1721).
  • the DNA fragment which contains the AP3 promoter region -902 to +15 from Arabidopsis thalia- na, was PCR-analyzed using genomic DNA (isolated from Arabidopsis thaliana according to standard methods) and the primers AP3-1 (SEQ ID No.41) and AP3 -2 (SEQ ID No. 42).
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which contains the AP3 promoter fragment (-902 to +15), was carried out in a 50 ⁇ l reaction mixture, which contained:
  • the PCR was carried out under the following cycle conditions:
  • the 2 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) using standard methods and the plasmid pAP3 was obtained.
  • Sequencing of the clone pAP3 confirmed a sequence consisting only of an insertion (a G in position g765 of the sequence AL132g71) and a base exchange (a G instead of an A in position g726 of the sequence AL132971) of the published AP3 sequence (AL132g71, nucleotide region g2g8-10200) differs. These nucleotide differences were reproduced in an independent amplification experiment and thus represent the actual nucleotide sequence in the Arabidopsis thaliana plants used.
  • the modified version AP3P was produced by means of recombinant PCR using the plasmid pAP3.
  • the region 10200 - g771 was amplified with the primers AP3-1 (SEQ ID No. 41) and primers AP3-4 (SEQ ID No. 44) (amplificate A1 / 4), the region g526-g285 with the AP3-3 (SEQ ID No. 43) and AP3-2 (SEQ ID No. 42) amplified (amplificate A2 / 3).
  • the PCR conditions were as follows:
  • the PCR was carried out under the following cycle conditions:
  • the recombinant PCR includes annealing of the amplificates A1 / 4 and A2 / 3, which overlap over a sequence of 25 nucleotides, completion into a double strand and subsequent amplification.
  • the denaturation (5 min at 95 ° C.) and annealing (slow cooling at room temperature to 40 ° C.) of both amplicons A1 / 4 and A2 / 3 was carried out in a 17.6 ⁇ l reaction mixture which contained:
  • the nucleic acid coding for the modified promoter version AP3P was amplified by means of PCR using a sense-specific primer (AP3-1 SEQ ID No. 41) and an antisense-specific primer (AP3-2 SEQ ID No. 42).
  • the PCR conditions were as follows:
  • the PCR for the amplification of the AP3P fragment was carried out in a 50 ⁇ l reaction mixture, which contained:
  • the PCR was carried out under the following cycle conditions:
  • the amplificate was cloned into the cloning vector pCR2.1 (Invitrogen) and the plasmid pAP3P was obtained. Sequencing with the primers T7 and M13 confirmed a sequence identical to the sequence AL132971, region 10200-92g8, the internal region g285-g526 being deleted. This clone was therefore used for the cloning into the expression vector pJIT117 (Guerineau et al. 1988, Nucl. Acids Res. 16: 11380).
  • the cloning was carried out by isolating the 767 bp SacI-HindIII fragment from pAP3P and ligating into the SacI-HindIII cut vector pJIT117.
  • the clone that contains the promoter AP3P instead of the original promoter d35S is called pJITAP3P.
  • the 79 g bp SpHI fragment NOSTF-G (described in Example 1) was cloned into the SpHI-cut vector pJITAP3P.
  • the clone that contains the fragment NOSTF-G in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJAP3PNOST.
  • An expression vector for the Agrobacterium -mediated transformation of the AP3P-controlled ketolase from Nostoc to Lesculentum was produced using the binary vector pSUN3 (WO02 / 00900).
  • fragment AP3P PROMOTER contains the modified AP3P promoter (765 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NOST KETOLASE CDS (777bp) the entire primary sequence coding for the nostoc ketolase, fragment 35S TERM (746 bp) the polyadenylation signal of CaMV.
  • An expression vector for the Agrobacterium -mediated transformation of the AP3P-controlled ketolase from Nostoc into Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00900).
  • fragment AP3P PROMOTER contains the modified AP3P promoter (765 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (207 bp), fragment NOST KETOLASE CDS (777 bp) the entire primary sequence coding for the nostoc ketolase, fragment 35S TERM (746 bp) the polyadenylation signal of CaMV.
  • X was amplified by PCR from Nostoc punctiform ATCC 29133 (strain of the "American Type Culture Collection").
  • the bacterial cells were pelleted from a 10 ml liquid culture by centrifugation at 8000 rpm for 10 minutes. The bacterial cells were then crushed and ground in liquid nitrogen using a mortar. The cell material was resuspended in 1 ml of 10 mM Tris_HCI (pH 7.5) and placed in an Eppendorf reaction vessel (2 ml of lumen) transferred. After adding 100 ⁇ l Proteinase K (concentration: 20 mg / ml), the cell suspension was incubated for 3 hours at 37 ° C. The suspension was then extracted with 500 ⁇ l of phenol.
  • the upper, aqueous phase was transferred to a new 2 ml Eppendorf reaction vessel i.
  • the extraction with phenol was repeated 3 times.
  • the DNA was precipitated by adding 1/10 volume of 3 M sodium acetate (pH 5.2) and 0.6 volume of isopropanol and then washed with 70% ethanol.
  • the DNA pellet was dried at room temperature, taken up in 25 ⁇ l of water and dissolved with heating to 65 ° C.
  • the nucleic acid encoding a ketolase from Nostoc punctiform ATCC 29133 was determined by means of a "polymerase chain reaction” (PCR) from Nostoc punctiform ATCC 29133 using a sense-specific primer (NP196-1, SEQ ID No. 54) and an antisense-specific Primers (NP196-2 SEQ ID No. 55) amplified.
  • PCR polymerase chain reaction
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 ⁇ l reaction mixture which contained
  • the PCR was carried out under the following cycle conditions:
  • PCR amplification with SEQ ID No. 54 and SEQ ID No. 55 resulted in a 792 bp fragment that codes for a protein consisting of the entire primary sequence (NPig ⁇ , SEQ ID No. 56).
  • the amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) and the clone pNP196 was obtained.
  • pJIT117 was modified by using the 35S terminator through the OCS terminator (octopine synthase) of the Ti plasmid pTi15g55 from Agrobacterium tumefaciens (database entry X004g3 from position 12.541-12.350, Gielen et al. (ig84) EMBO J. 3835-846 ) was replaced.
  • the DNA fragment which contains the OCS terminator region was PCR-isolated using the plasmid pHELLSGATE (database entry AJ311874, Wesley et al. (2001) Plant J. 27581-590, isolated from E. coli by standard methods) and the primer OCS -1 (SEQ ID No. 58) and OCS-2 (SEQ ID No. 59).
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which contains the octopine synthase (OCS) terminator region (SEQ ID No. 60), was carried out in a 50 ⁇ l reaction mixture, which contained: 100 ng pHELLSGATE plasmid DNA 0.25 mM dNTPs 0.2 mM OCS-1 (SEQ ID No. 58) 0.2 mM OCS-2 (SEQ ID No. 5) 5 ul IOX PCR buffer (Stratagene) 0.25 ul Pfu polymerase (Stratagene) 28.8 ul aq. Least.
  • OCS octopine synthase
  • the PCR was carried out under the following cycle conditions:
  • the 210 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) using standard methods and the plasmid pOCS was obtained.
  • Sequencing of the clone pOCS confirmed a sequence which corresponds to a sequence section on the Ti plasmid pTi15955 from Agrobacterium tumefaciens (database entry X00493) from positions 12,541 to 12,350.
  • the cloning was carried out by isolating the 210 bp Sall-Xhol fragment from pOCS and ligation into the Sall-Xhol cut vector pJIT117.
  • This clone is called pJO and was therefore used for the cloning into the expression vector pJONP196.
  • the cloning was carried out by isolating the 782 bp Sphl fragment from pNP196 and ligating into the SphI cut vector pJO.
  • the clone that contains the Nostoc punctiforme NPig6 ketolase in the correct orientation as an N-terminal translational fusion with the rbcS transit peptide is called pJONP196.
  • the expression of the NP196 ketolase from Nostoc punctiforme in L. esculentum and in Tagetes erecta was carried out under the control of the constitutive promoter FNR (ferredoxin NADPH oxidoreductase, database entry AB011474 position 70127 to 694g3; WO03 / 006660), from Arabidopsis thallana.
  • FNR constitutive promoter
  • the FNR gene begins at base pair 69492 and is annotated with "ferredoxin-NADP + reductase”. Expression was carried out using the pea transit peptide rbcS (Anderson et al. 1986, Biochem J. 240: 709-715).
  • the DNA fragment containing the FNR promoter region from Arabidopsis thallana was PCR-analyzed using genomic DNA (isolated from Arabidopsis thaliana according to standard methods) and the primers FNR-1 (SEQ ID No. 61) and FNR-2 (SEQ ID No. 62).
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which contains the FNR promoter fragment FNR (SEQ ID No. 63), was carried out in a 50 ⁇ l reaction mixture which contained:
  • the PCR was carried out under the following cycle conditions:
  • the 652 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Jnvitrogen) using standard methods and the plasmid pFNR was obtained.
  • Sequencing of the clone pFNR confirmed a sequence which corresponds to a sequence section on chromosome 5 of Arabidopsis thaliana (database entry AB011474) from position 70127 to 6g493.
  • This clone is called pFNR and was therefore used for the cloning into the expression vector pJONP196 (described in Example 6).
  • the cloning was carried out by isolating the 644 bp Smal-Hindlll fragment from pFNR and ligating into the Ecl136ll-Hindlll cut vector pJONP196.
  • the clone which contains the promoter FNR instead of the original promoter d35S and the fragment NP196 in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJOFNR: NP196.
  • fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (ig4 bp), fragment NP196 KETO CDS (761 bp), coding for the nostoc punctiform NPig ⁇ ketolase, fragment OCS W2 bp) the polyadenylation signal from the octopine synthase.
  • fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NP196 KETO CDS (761 bp), coding for the nostoc punctiform NP196 ketolase, Fragment OCS terminator (192 bp) the octopine synthase polyadenylation signal.
  • Example 8 Production of expression vectors for the flower-specific expression of the NP196 ketolase from Nostoc punctiforme ATCC 29133 in Lycopersicon esculentum and Tagetes erecta
  • NPig ⁇ -ketolase from Nostoc punctiforme in Lesculentum and Unes erecta was carried out with the transit peptide rbcS from pea (Anderson et al. 1986, Biochem J. 240: 709-715). Expression was carried out under the control of the flower-specific promoter EPSPS from Petunia hybrida (database entry M37029: nucleotide region 7-1787; Benfey et al. (1990) Plant Cell 2: 849-856).
  • the DNA fragment which contains the EPSPS promoter region (SEQ ID No. 66) from Petunia hybrida, was PCR-analyzed using genomic DNA (isolated from Petunia hybrida according to standard methods) and the primers EPSPS-1 (SEQ ID No. 64) and EPSPS -2 (SEQ ID No. 65).
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which contains the EPSPS promoter fragment (database entry M37029: nucleotide region 7-1787), was carried out in a 50 ⁇ l reaction mixture which contained:
  • the PCR was carried out under the following cycle conditions:
  • the 1773 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) using standard methods and the plasmid pEPSPS was obtained.
  • Sequencing of the clone pEPSPS confirmed a sequence consisting only of two deletions (bases ctaagtttcagga in position 46-58 of sequence M3702g; bases aaaaatat in positions 1422-142g of sequence M3702g) and the base exchanges (T instead of G in position 1447 of sequence M3702g ; A instead of C in position 1525 of sequence M3702g; A instead of G in position 1627 of sequence M3702g) differs from the published EPSPS sequence (database entry M3702g: nucleotide region 7-1787).
  • the two deletions and the two base changes at positions 1447 and 1627 of the sequence M3702g were reproduced in an independent amplification experiment and thus represent the actual nucleotide sequence in the Petunia hybrida plants used.
  • the clone pEPSPS was therefore used for the cloning into the expression vector pJONPI g6 (described in Example 6).
  • the cloning was carried out by isolating the 1763 bp SacI-HindIII fragment from pEPSPS and ligation into the SacI-HindIII cut vector pJONPI 6.
  • the clone which contains the promoter EPSPS instead of the original promoter d35S is called pJOESP: NP196.
  • This expression cassette contains the fragment NP196 in the correct orientation as an N-terminal fusion with the rbcS transit peptide.
  • fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (1 g4 bp), fragment NP196 KETO CDS (761 bp), coding for the Nostoc punctiform NPig ⁇ -ketolase, fragment OCS terminator (ig2 bp) the polyadenylation signal of octopine synthase.
  • An expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NP196 ketolase from Nostoc punctiforme in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00g00).
  • fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (1 4 bp), fragment NP196 KETO CDS (761 bp), coding for the Nostoc punctiform NPig ⁇ ketolase, fragment OCS terminator (192 bp) the polyadenylation signal of octopine synthase.
  • Example g Amplification of a DNA encoding the entire primary sequence of the NP1 g5 ketolase from Nostoc punctiforme ATCC 29133
  • the nucleic acid encoding a Nostoc punctiform ATCC 29133 ketolase was synthesized by means of a "polymerase chain reaction” (PCR) from Nostoc punctiform ATCC 29133 using a sense-specific primer (NP195-1, SEQ ID No. 67) and an antisense-specific one Primers (NPig5-2 SEQ ID No. 68) amplified.
  • PCR polymerase chain reaction
  • the PCR for the amplification of the DNA which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 ⁇ l reaction mixture, which contained:
  • the PCR was carried out under the following cycle conditions:
  • PCR amplification with SEQ ID No. 67 and SEQ ID No. 68 resulted in an 819 bp fragment coding for a protein consisting of the entire primary sequence (NP195, SEQ ID No. 69).
  • the amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) and the clone pNP195 was obtained.
  • This clone pNP105 was therefore used for the cloning into the expression vector pJO (described in Example 6).
  • the cloning was carried out by isolating the 800 bp Sphl fragment from pNPigs and ligation into the SphI cut vector pJO.
  • the clone which contains the NPig ⁇ ketolase from Nostoc punctiforme in the correct orientation as an N-terminal translational fusion with the rbcS transit peptide is called pJONPI 95.
  • the expression of the NP195 ketolase from Nostoc punctiforme in L. esculentum and in Tagetes erecta was carried out under the control of the constitutive promoter FNR (ferredoxin NADPH oxidoreductase, database entry AB011474 position 70127 to 69493; WO03 / 006660), from Arabidopsis thallana.
  • FNR constitutive promoter
  • the FNR gene begins at base pair 694g2 and is annotated with "ferredoxin-NADP + reductase”. Expression was carried out using the pea transit peptide rbcS (Anderson et al. 1086, Biochem J. 240: 700-715).
  • the clone pFNR (described in Example 7) was therefore used for the cloning into the expression vector pJONPI 05 (described in Example 10).
  • the cloning was carried out by isolating the 644 bp Sma-Hindlll fragment from pFNR and ligating into the Ecl136ll-Hindlll cut vector pJONPI 05.
  • the clone which contained the promoter FNR instead of the original promoter d35S and the fragment NPi ⁇ in the correct orientation as contains terminal fusion with the rbcS transit peptide is called pJOFNR: NP195.
  • An expression cassette for the Agrobacterium-mediated transformation of the NP195 ketolase from Nostoc punctiforme into lesculentum was produced using the binary vector pSUN3 (WO02 / 00000).
  • fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NP195 KETO CDS (78g bp), coding for the nostoc punctiform NPi g ⁇ -ketolase, fragment OCS terminator (ig2 bp) the polyadenylation signal of octopine synthase.
  • the expression of the NP1 g5 ketolase from Nostoc punctiforme in L. esculentum and Tagetes erecta was carried out with the transit peptide rbcS from pea (Anderson et al. Ig86, Biochem J. 240: 700-715). The expression was carried out under the control of the flower-specific promoter EPSPS from Petunia hybrida (database entry M37020: nucleotide region 7-1787; Benfey et al. (1990) Plant Cell 2: 840-856).
  • the clone pEPSPS (described in Example 8) was therefore used for the cloning into the expression vector pJONPI 95 (described in Example 10).
  • the cloning was carried out by isolating the 1763 bp SacI-HindIII fragment from pEPSPS and ligation into the SacI-HindIII cut vector pJONPI 05.
  • the clone which contains the promoter EPSPS instead of the original promoter d35S, is called pJOESP: NPig5.
  • This expression cassette contains the fragment NPi ⁇ in the correct orientation as an N-terminal fusion with the rbcS transit peptide.
  • fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NP195 KETO CDS (789 bp), coding for the Nostoc punctiform NPig ⁇ -ketolase, fragment OCS terminator (192 bp) the polyadenylation signal of octopine synthase.
  • An expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NPig ⁇ -ketolase from Nostoc punctiforme in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00 ⁇ 00).
  • fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (1 g4 bp), fragment NP195 KETO CDS (78g bp), coding for the Nostoc punctiform NPig ⁇ -ketolase, fragment OCS Terminator (192 bp) the polyadenylation signal of octopine synthase.
  • Example 12 Amplification of a DNA encoding the entire primary sequence of the NODK ketolase from Noularia spumignea ⁇ / SOft 70.
  • the DNA encoding the ketolase from Nodularia spumignea NSOR 10 was amplified by PCR from Nodularia spumignea NSOR10.
  • genomic DNA from a suspension culture of Nodularia spumignea NSOR10, d ⁇ e 1 week with continuous light and constant shaking (150 rpm) at 25 ° C in BG 77 medium (1.5 g / l NaN0 3 , 0.04 g / l K 2 P0 4 x3H 2 0, 0.075 g / l MgS0 4 xH 2 O, 0.036 g / l CaCI 2 x2H 2 O, 0.006 g / l citric acid, 0.006 g / l Ferric ammonium citrate, 0.001 g / l EDTA disodium magnesium, 0.04 g / l Na 2 CO 3 , 1 ml trace metal mix "A5 + Co" (2.86 g / l H 3 BO 3 ,
  • the bacterial cells were pelleted from a 10 ml liquid culture by centrifugation at 8000 rpm for 10 minutes. The bacterial cells were then crushed and ground in liquid nitrogen using a mortar. The cell material was resuspended in 1 ml of 10 mM Tris HCl (pH 7.5) and transferred to an Eppendorf reaction vessel (2 ml volume). After adding 100 ⁇ l Proteinase K (concentration: 20 mg / ml), the cell suspension was incubated for 3 hours at 37 ° C. Then the
  • the nucleic acid encoding a ketolase from Nodularia spumignea NSOR10 was determined by means of a "polymerase chain reaction” (PCR) from Nodularia spumignea NSOR10 using a sense-specific primer (NODK-1, SEQ ID No. 71) and an antisense-specific primer ( NODK-2 SEQ ID No. 72).
  • PCR polymerase chain reaction
  • the PCR conditions were as follows:
  • the PCR for the amplification of the DNA which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 ⁇ l reaction mixture, which contained: 1 ul of a Nodularia spumignea NSOR10 DNA (prepared as described above)
  • 0.2 mM NODK-1 (SEQ ID No. 71) - 0.2 mM NODK-2 (SEQ ID No. 72) 5 ul 10X PCR buffer (TAKARA) 0.25 ul R Taq polymerase (TAKARA) 25.8 ul Aq. Least.
  • the PCR was carried out under the following cycle conditions:
  • PCR amplification with SEQ ID No. 71 and SEQ ID No. 72 resulted in a 720 bp fragment coding for a protein consisting of the entire primary sequence (NODK, SEQ ID No. 73).
  • the amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) and the clone pNODK was obtained.
  • This clone pNODK was therefore used for the cloning into the expression vector pJO (described in Example 6).
  • the cloning was carried out by isolating the 710 bp Sphl fragment from pNODK and ligation into the SphI-cut vector pJO.
  • the clone that shows the NODK ketolase from Nodularia spumignea in the correct orientation contains as an N-terminal translational fusion with the rbcS transit peptide is called pJONODK.
  • Example 13 Production of expression vectors for the constitutive expression of the NODK ketolase from Nodularia spumignea NSOR10 in Lycopersicon esculentum and Tagetes erecta.
  • the expression of the NODK ketolase from Nodularia spumignea NSOR10 in L. esculentum and in Tagetes erecta was carried out under the control of the constitutive promoter FNR (ferredoxin-NADPH-oxidoreductase, database entry AB011474 position 70127 to 60403; WO03 / 006660) from Arabidopsis thall.
  • FNR constitutive promoter
  • the FNR gene begins at base pair 604g2 and is annotated with "ferredoxin-NADP + reductase”. Expression was carried out using the pea transit peptide rbcS (Anderson et al. Ig86, Biochem J. 240: 700-715).
  • the clone pFNR (described in Example 7) was therefore used for the cloning into the expression vector pJONODK (described in Example 12).
  • the cloning was carried out by isolating the 644 bp Sma-HindIII fragment from pFNR and ligating into the Ecl136II-HindIII cut vector pJONODK.
  • the clone which contains the promoter FNR instead of the original promoter d35S and the fragment NODK in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJOFNR: NODK.
  • fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (104 bp), fragment NODK KETO CDS (600 bp), coding for the Nodularia spumignea NSOR10 NODK ketolase, fragment OCS terminator (102 bp) the polyadenylation signal from the octopine synthase.
  • An expression cassette for the / 4grobactet / um-mediated transformation of the expression vector with the NODK ketolase from Nodularia spumignea NSOR10 punctiforme in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00900).
  • fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NODK KETO CDS (6g ⁇ bp), coding for the Nodularia spumignea NSOR10 NODK ketolase , Fragment OCS terminator (102 bp) the polyadenylation signal of octopine synthase.
  • Example 14 Production of expression vectors for the flower-specific expression of the NODK ketolase from Nodularia spumignea NSORW in Lycopersicon esculentum and Tagetes erecta.
  • the NODK ketolase from Nodularia spumignea NSOR10 ⁇ n L. esculenum and Tagetes erecta was expressed with the transit peptide rbcS from pea (Anderson et al: 1086, Biochem J. 240: 709-715). The expression was carried out under the control of the flower-specific promoter EPSPS from Petunia hybrida (database entry M37029: nucleotide region 7-1787; Benfey et al. (1990) Plant Cell 2: 840-856).
  • the clone pEPSPS (described in Example 8) was therefore used for the cloning into the expression vector pJONODK (described in Example 12).
  • the cloning was carried out by isolating the 1763 bp SacI-HindIII fragment from pEPSPS and ligation into the SacI-HindIII cut vector pJONODK.
  • the clone that contains the promoter EPSPS instead of the original promoter d35S is called pJOESP: NODK.
  • This expression cassette contains the fragment NODK in the correct orientation as an N-terminal fusion with the rbcS transit peptide.
  • fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NODK KETO CDS (690 bp), coding for the Nodularia spumignea NSOR 10 NODK ketolase, fragment OCS terminator (102 bp) the polyadenylation signal of octopine synthase.
  • An expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NODK ketolase from Nodularia spumignea NSOR10 in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00 ⁇ 00).
  • the 2,880 KB bp Sacl-Xhol was used to produce the expression vector MSP116
  • fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT ' the rbcS transit peptide from pea (104 bp), fragment NODK KETO CDS (600 bp), coding for the Nodularia spumignea NSOR10 NODK-Ketolase, fragment OCS terminator (102 bp) the polyadenylation signal of octopine synthase.
  • Transformation and regeneration of tomato plants was carried out according to the published method by Ling and co-workers (Plant Cell Reports (1998), 17: 843-847).
  • Ling and co-workers Plant Cell Reports (1998), 17: 843-847).
  • kanamycin concentrations 100 mg / L were selected.
  • the starting explant for the transformation was cotyledons and hypocotyls, seven to ten day old seedlings of the Microtome line.
  • the culture medium according to Murashige and Skoog (1062: Murashige and Skoog, 1062, Physiol. Plant 15, 473-) with 2% sucrose, pH 6.1 was used for the germination. Germination took place at 21 ° C in low light (20 - 100 ⁇ E).
  • the cotyledons became divided transversely and the hypocotyls cut into sections about 5 to 10 mm long and placed on the medium MSBN (MS, pH 6.1, 3% sucrose + 1 mg / l BAP, 0.1 mg / l NAA), which on The previous day was loaded with suspension-cultivated tomato cells.
  • the tomato cells were covered with sterile filter paper without air bubbles.
  • the explants were precultured on the medium described for three to five days.
  • Cells from the Agrobacterium tumefaciens LBA4404 strain were individually transformed with the plasmids pS3FNR: NOST, pS3AP3: NOST, pS3FNR: NP106, pS3EPS: NP106, pS3FNR: NP105, pS3EPS: NP105, pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: transform.
  • the bacterial pellet was resuspended with liquid MS medium (3% sucrose, pH 6.1) and adjusted to an optical density of 0.3 (at 600 nm).
  • the precultivated explants were transferred to the suspension and incubated for 30 minutes at room temperature with gentle shaking.
  • the explants were then dried with sterile filter paper and placed back on their preculture medium for the three-day co-culture (21 ° C.).
  • the explants were transferred to MSZ2 medium (MS pH 6.1 + 3% sucrose, 2 mg / l zeatin, 100 mg / l kanamycin, 160 mg / l timentin) and for selective regeneration at 21 ° C stored under low light conditions (20 - 100 ⁇ E, light rhythm 16h / 8h).
  • MSZ2 medium MS pH 6.1 + 3% sucrose, 2 mg / l zeatin, 100 mg / l kanamycin, 160 mg / l timentin
  • the explants were transferred every two to three weeks until shoots formed. Small shoots could be separated from the explant and rooted on MS (pH 6.1 + 3% sucrose) 160 mg / l timentin, 30 mg / l kanamycin, 0.1 mg / l IAA. Rooted plants were transferred to the greenhouse.
  • NP196 was obtained: MSP107-1, MSP107-2, MSP107-3
  • NP105 was obtained: MSP100-1, MSP100-2, MSP100-3
  • germination medium MS medium; Murashige and Skoog, Physiol. Plant. 15 (1062), 473-407) pH 5.8, 2% sucrose). Germination takes place in a temperature / light / time interval of 18-28 ° C / 20-200 ⁇ E / 3-16 weeks, but preferably at 21 ° C, 20-70 ⁇ E, for 4-8 weeks.
  • pS5FNR NOST
  • pS5AP3 NOST
  • pS5FNR NP106
  • pS5EPS NP196
  • pS5FNR NP1
  • pS5EPS NP1 g5
  • pS5FNR NODK
  • pS5EPS NODK
  • the bacterial strain can be grown as follows: A single colony of the corresponding strain is in YEB (0.1% yeast extract, 0.5% beef extract, 0.5% peptone, 0.5% sucrose, 0.5% magnesium sulfate x 7 H) 2 0) inoculated with 25 mg / l kanamycin and dressed at 28 ° C for 16 to 20 h. The bacterial suspension is then harvested by centrifugation at 6000 g for 10 min and resuspended in liquid MS medium such that an OD 600 of approximately 0.1 to 0.8 was formed. This suspension is used for C cultivation with the leaf matter! used.
  • the MS medium in which the leaves have been kept is replaced by the bacterial suspension.
  • the leaflets were incubated in the agrobacterial suspension for 30 min with gentle shaking at room temperature.
  • the infected explants are then placed on an MS medium solidified with agar (for example 0.8% plant agar (Duchefa, NL) with growth regulators, such as 3 mg / l benzylaminopurine (BAP) and 1 mg / l indolylacetic acid (IAA).
  • agar for example 0.8% plant agar (Duchefa, NL) with growth regulators, such as 3 mg / l benzylaminopurine (BAP) and 1 mg / l indolylacetic acid (IAA).
  • the orientation of the leaves on the medium is irrelevant: the explants are cultivated for 1 to 8 days, but preferably for 6 days, the following conditions can be used: light intensity: 30-80 ⁇ mol / m 2 x sec, temperature: 22-24 ° C., light / dark change of 16/8 hours, after which the co-cultivated explants are transferred to fresh MS medium, preferably with the same growth regulators, this second medium additionally containing an antibiotic to suppress bacterial growth
  • a concentration of 200 to 500 mg / l is very suitable for this purpose, and the second selective component is one used to select the success of the transformation.
  • Phosphinothricin in a concentration of 1 to 5 mg / l selects very efficiently, but other selective components according to the method to be used are also conceivable.
  • the explants are transferred to fresh medium until shoot buds and small shoots develop, which are then on the same basal medium including timentin and PPT or alternative components with growth regulators, namely, for example, 0.5 mg / l indolylbutyric acid (IBA) and 0.5 mg / l gibberillic acid GA 3 , are transferred for rooting. Rooted shoots can be transferred to the greenhouse.
  • IBA 0.5 mg / l indolylbutyric acid
  • GA 3 gibberillic acid
  • the explants Before the explants are infected with the bacteria, they can be pre-incubated for 1 to 12 days, preferably 3-4, on the medium described above for the co-culture become. The infection, co-culture and selective regeneration then take place as described above.
  • the pH value for regeneration (normally 5.8) can be lowered to pH 5.2. This improves the control of agrobacterial growth.
  • Liquid culture medium can also be used for the entire process.
  • the culture can also be incubated on commercially available carriers which are positioned on the liquid medium.
  • pS5FNR NOST, for example, the following was obtained: MSP102-1, MSP102-2, MSP102-3,
  • pS5AP3 NOST, for example, the following was obtained: MSP104-1, MSP104-2, MSP104-3
  • NP106 was obtained: MSP106-1, MSP106-2, MSP106-3
  • NP106 was obtained: MSP108-1, MSP108-2, MSP108-3
  • NP105 was obtained: MSP110-1, MSP110-2, MSP110-3
  • the petals of the transgenic plants are mortarized in liquid nitrogen and the petalen powder (about 40 mg) extracted with 100% acetone (three times 500 ul). The solvent is evaporated and the carotenoids are resuspended in 100-200 ul of petroleum ether / acetone (5: 1, v / v).
  • the carotenoids are separated in concentrated form by means of thin layer chromatography (TLC) on Silica ⁇ O F254 plates (Merck) in an organic solvent (petroleum ether / acetone; 5: 1) according to their phobicity. Yellow (xanthophyll esters), red (ketocarotenoid esters) and orange bands (mixture of xanthophyll and ketocarotenoid esters) are scraped out on the TLC.
  • TLC thin layer chromatography
  • the carotenoids bound to silica are eluted three times with 500 ⁇ l of acetone, the solvent is evaporated and the carotenoids are separated and identified by means of HPLC.
  • a C30 reverse phase column can be used to differentiate between mono- and diesters of carotenoids.
  • HPLC running conditions were almost identical to a published method (Frazer et al. (2000), Plant Journal 24 (4): 551-558). The following process conditions were set.
  • Solvent B 80% methanol, 0.2% ammonium acetate solvent
  • C 100% t-butyl methyl ether gradient profile:
  • the carotenoids can be identified on the basis of the UV-VIS spectra.
  • Petal material from the transgenic tomato plants is ground and extracted with acetone. Extracted carotenoids are separated by means of TLC. In the lines can
  • Mono and diesters of ketocarotenoids can be detected; the monoesters are present in a significantly lower concentration than the diesters.
  • Mortar petal material (30-100 mg fresh weight) is extracted with 100% acetone (three times 500 ul; shake for about 15 minutes each). The solvent is evaporated. Carotenoids are then taken up in 405 ⁇ l of acetone, 4.95 ml of potassium phosphate buffer (100 mM, pH 7.4) are added and mixed well. Then about 17 mg of Bile salts (Sigma) and 140 ⁇ l of a NaCI / CaCI2 solution (3M NaCI and 75 mM CaCI2) are added. The suspension is incubated for 30 minutes at 37C.
  • a lipase solution 50 mg / ml lipase type 7 from Candida rugosa (Sigma)
  • 505 ⁇ l of a lipase solution 50 mg / ml lipase type 7 from Candida rugosa (Sigma)
  • a lipase solution 50 mg / ml lipase type 7 from Candida rugosa (Sigma)
  • 595 ⁇ l of lipase was added again and incubation was continued for at least 5 hours at 37C.
  • be about 700 mg of Na2SO4x10H20 dissolved in the solution After adding 1800 ⁇ l of petroleum ether, the carotenoids are extracted into the organic phase by vigorous mixing. This shaking is repeated until the organic phase remains indolent.
  • the petroleum ether fractions are combined and the petroleum ether evaporated. Free carotenoids are taken up in 100-120 ul acetone. Free carotenoids can be identified on the basis of retention time and UV-VlS spectra by means of HPLC

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Abstract

The present invention relates to a process for preparing ketocarotenoids by cultivation of genetically modified organisms which, compared with the wild type, have a modified ketolase activity, to the genetically modified organisms, and to the use thereof as human and animal foods and for producing ketocarotenoid extracts.

Description

Verfahren zur Herstellung von Ketocarόtinoiden in genetisch veränderten OrganismenProcess for the production of ketocarόtinoids in genetically modified organisms
Beschreibungdescription
Die vorliegende Erfindung betrifft ein Verfahren zur Herstellung von Ketocarotinoiden durch Kultivierung von genetisch veränderten Organismen, die im Vergleich zum Wildtyp eine veränderte Ketolase-Aktivität aufweisen, die genetisch veränderten Organismen, sowie deren Verwendung als Nahrungs- und Futtermittel und zur Herstellung von Ketocarotinoidextrakten.The present invention relates to a process for the preparation of ketocarotenoids by cultivating genetically modified organisms which have a modified ketolase activity compared to the wild type, the genetically modified organisms, and their use as food and feed and for the production of ketocarotenoid extracts.
Carotinoide werden de novo in Bakterien, Algen, Pilzen und Pflanzen synthetisiert. Ketocarotinoide, also Carotinoide, die mindestens eine Keto-Gruppe enthalten, wie- beispielsweise Astaxanthin, Canthaxanthin, Echinenon, 3-Hydroxyechinenon, 3'- Hydroxyechinenon, Adonirubin und Adonixanthin sind natürliche Antioxidantien und Pigmente, die von einigen Algen und Mikroorganismen als Sekundärmetabolite produziert werden.Carotenoids are synthesized de novo in bacteria, algae, fungi and plants. Ketocarotenoids, i.e. carotenoids that contain at least one keto group, such as astaxanthin, canthaxanthin, echinenone, 3-hydroxyechinenone, 3'-hydroxyechinenone, adonirubin and adonixanthin are natural antioxidants and pigments that are produced by some algae and microorganisms as secondary metabolites ,
Aufgrund ihrer farbgebenden Eigenschaften werden die Ketocarotinoide und irisbesondere Astaxanthin als Pigmentierhilfsstoffe in der Tieremähruηg, insbesondere in der Forellen-, Lachs- und Shrimpszucht verwendet.Because of their coloring properties, the ketocarotenoids and especially astaxanthin are used as pigmentation aids in animal nutrition, especially in trout, salmon and shrimp farming.
Die Herstellung von Astaxanthin erfolgt heutzutage größtenteils durch chemische Syntheseverfahren. Natürliche Ketocarotinoide, wie beispielsweise natürliches Astaxanthin, werden heutzutage in biotechnologischen Verfahren in kleinen Mengen durch Kultivierung von Algen, beispielsweise Haematococcus pluvialis oder durch Fermentation von gentechnologisch optimierten Mikroorganismen und anschließender Isolierung gewonnen.Nowadays, astaxanthin is mainly produced using chemical synthesis processes. Natural ketocarotenoids, such as natural astaxanthin, are nowadays obtained in small amounts in biotechnological processes by cultivating algae, for example Haematococcus pluvialis or by fermentation of genetically optimized microorganisms and subsequent isolation.
Ein wirtschaftliches biotechnologisches Verfahren zur Herstellung von natürlichen Ketocarotinoiden ist daher von großer Bedeutung.An economical biotechnological process for the production of natural ketocarotenoids is therefore of great importance.
Nukleinsäuren kodierend eine Ketolase und die entsprechenden Proteinsequenzen sind aus verschiedenen Organismen isoliert und annotiert worden, wie beispielsweise Nukleinsäuren kodierend eine Ketolase aus Agrobacterium aurantiacum (EP 735 137, Accession NO: D58420), aus Alcaligenes sp. PC-1 (EP 735137, Accession NO: D58422), Haematococcus pluvialis Flotow em. 7//e und Haematoccus pluvialis, NIES- 144 (EP 725137, WO 98/18910 und Lotan et al, FEBS Letters 1995, 364, 125-128, Accession NO: X86782 und D45881), Paracoccus marcusii (Accession NO: Y15112), Synechocystis sp. Strain PC6803 (Accession NO: NP_442491), Bradyrhizobium sp. (Accession NO: AF218415) und Nostoc sp. PCC 7120 (Kaneko et al, DNA Res. 2001 , 8(5), 205 - 213; Accession NO: AP003592, BAB74888).Nucleic acids encoding a ketolase and the corresponding protein sequences have been isolated and annotated from various organisms, such as nucleic acids encoding a ketolase from Agrobacterium aurantiacum (EP 735 137, Accession NO: D58420), from Alcaligenes sp. PC-1 (EP 735137, Accession NO: D58422), Haematococcus pluvialis Flotow em. 7 // e and Haematoccus pluvialis, NIES- 144 (EP 725137, WO 98/18910 and Lotan et al, FEBS Letters 1995, 364, 125-128, Accession NO: X86782 and D45881), Paracoccus marcusii (Accession NO: Y15112), Synechocystis sp. Strain PC6803 (Accession NO: NP_442491), Bradyrhizobium sp. (Accession NO: AF218415) and Nostoc sp. PCC 7120 (Kaneko et al, DNA Res. 2001, 8 (5), 205-213; Accession NO: AP003592, BAB74888).
EP 735 137 beschreibt die Herstellung von Xanthophyllen in Mikroorganismen, wie beispielsweise E. coli durch Einbringen von Ketolase-Genen (crtW) aus Agrobacterium aurantiacum oder Alcaligenes sp. PC-1 in Mikroorganismen.EP 735 137 describes the production of xanthophylls in microorganisms, such as, for example, E. coli by introducing ketolase genes (crtW) from Agrobacterium aurantiacum or Alcaligenes sp. PC-1 in microorganisms.
Aus EP 725 137, WO 98/18910, Kajiwara et al. (Plant Mol. Biol. 1995, 29, 343-352) und Hirschberg et al.(FEBS Letters 1995, 364, 125-128) ist es bekannt, Astaxanthin durch Einbringen von Ketolase-Genen aus Haematococcus pluvialis (crtW, crtO oder bkt) in E. coli herzustellen.From EP 725 137, WO 98/18910, Kajiwara et al. (Plant Mol. Biol. 1995, 29, 343-352) and Hirschberg et al. (FEBS Letters 1995, 364, 125-128) it is known to introduce astaxanthin by introducing ketolase genes from Haematococcus pluvialis (crtW, crtO or bkt ) in E. coli.
Hirschberg et al.(FEBS Letters 1997, 404, 129-134) beschreiben die Herstellung von Astaxanthin in Synechococcus durch Einbringen von Ketolase-Genen (crtO) aus Haematococcus pluvialis. Sandmann et al. (Photochemistry and Photobiology 2001 , 73(5), 551-55) beschreiben ein analoges Verfahren, das jedoch zur.Herstellung von Cantha- xanthin führt und nur Spuren Astaxanthin liefert.Hirschberg et al. (FEBS Letters 1997, 404, 129-134) describe the production of astaxanthin in Synechococcus by introducing ketolase genes (crtO) from Haematococcus pluvialis. Sandmann et al. (Photochemistry and Photobiology 2001, 73 (5), 551-55) describe an analogous method, which however leads to the production of cantaxanthin and only provides traces of astaxanthin.
WO 98/18910 und Hirschberg et al. (Nature Biotechnology 2000, 18(8), 888-892) beschreiben die Synthese von Ketocarotinoiden in Nektarien von Tabakblüten durch Einbringen des Ketolase-Gens aus Haematococcus pluvialis (crtO) in Tabak.WO 98/18910 and Hirschberg et al. (Nature Biotechnology 2000, 18 (8), 888-892) describe the synthesis of ketocarotenoids in nectaries of tobacco flowers by introducing the ketolase gene from Haematococcus pluvialis (crtO) into tobacco.
WO 01/20011 beschreibt ein DNA Konstrukt zur Produktion von Ketocarotinoiden, insbesondere Astaxanthin, in Samen von Ölsaatpflanzen wie Raps, Sonnenblume, Sojabohne und Senf unter Verwendung eines Samen-spezifischen Promotors und einer Ketolase aus Haematococcus pluvialis.WO 01/20011 describes a DNA construct for the production of ketocarotenoids, in particular astaxanthin, in seeds of oilseed plants such as oilseed rape, sunflower, soybean and mustard using a seed-specific promoter and a ketolase from Haematococcus pluvialis.
Alle im Stand der Technik beschriebenen Verfahren zur Herstellung von Ketocarotinoiden und insbesondere die beschriebenen Verfahren zur Herstellung von Astaxanthin weisen den Nachteil auf, daß die transgenen Organismen eine große Menge an hydro- xylierten Nebenprodukten, wie beispielsweise Zeaxanthin und Adonixanthin liefern. Der Erfindung lag daher die Aufgabe zugrunde, ein Verfahren zur Herstellung von Ketocarotinoiden durch Kultivierung von genetisch veränderten Organismen zur Verfügung zu stellen, bzw. weitere genetisch veränderte Organismen, die Ketocarotinoide herstellen, zur Verfügung zu stellen, die die vorstehend beschriebenen Nachteile des Standes der Technik in geringerem Maße oder nicht mehr aufweisen.All processes described in the prior art for the production of ketocarotenoids and in particular the processes described for the production of astaxanthin have the disadvantage that the transgenic organisms provide a large amount of hydroxylated by-products, such as zeaxanthin and adonixanthin. The invention was therefore based on the object of providing a process for the preparation of ketocarotenoids by cultivating genetically modified organisms, or of providing further genetically modified organisms which produce ketocarotenoids which have the disadvantages of the prior art described above to a lesser extent or no longer.
Demgemäß wurde ein Verfahren zur Herstellung von Ketocarotinoiden gefunden, indem man genetisch veränderte Organismen kultiviert, die im Vergleich zum Wildtyp eine veränderte Ketolase-Aktivität aufweisen und die veränderte Ketolase-Aktivität durch eine Ketolase verursacht wird, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.Accordingly, a method for producing ketocarotenoids has been found by cultivating genetically modified organisms which have an altered ketolase activity compared to the wild type and the altered ketolase activity is caused by a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
Die erfindungsgemäßen Organismen wie beispielsweise Mikroorganismen oder Pflanzen sind vorzugsweise als Ausgangsorganismen natürlicherweise in der Lage, Carotinoide wie beispielsweise ß-Carotin oder Zeaxanthin herzustellen, oder können durch genetische Veränderung, wie beispielsweise Umregulierung von Stoffwechselwegen oder Komplementierung in die Lage versetzt werden, Carotin'oide wie beispielsweise ß- Carotin oder Zeaxanthin herzustellen.The organisms according to the invention, such as, for example, microorganisms or plants, are preferably naturally able, as starting organisms, to produce carotenoids such as, for example, β-carotene or zeaxanthin, or can be put into a position by carotinoids such as, for example, reorganization of metabolic pathways or complementation for example, to produce β-carotene or zeaxanthin.
Einige Organismen sind als Ausgangs- oder Wildtyporganismen bereits in der Lage, Ketocarotinoidewie beispielsweise Astaxanthin oder Canthaxanthin herzustellen. Diese Organismen, wie beispielsweise Haematococcus pluvialis, Paracoccus marcusii, Xan- thophyllomyces dendrorhous, Bacillus circulans, Chlorococcum, Phaffia rhodozyma, Adonisröschen, Neochloris wimmeri,Protosiphon botryoides, Scotiellopsis oocystifor- mis, Scenedesmus vacuolatus, Chlorela zofingiensis, Ankistrodesmus braunii, Euglena sanguinea, Bacillus atrophaeus, Blakeslea weisen bereits als Ausgangs- oder Wildtyporganismus eine Ketolase-Aktivität auf.Some organisms, as starting or wild-type organisms, are already able to produce ketocarotenoids such as astaxanthin or canthaxanthin. These organisms, such as Haematococcus pluvialis, Paracoccus marcusii, Xan- thophyllomyces dendrorhous, Bacillus circulans, Chlorococcum, Phaffia rhodozyma, Adonis, Neochloris wimmeri, vacuolatus Protosiphon botryoides, Scotiellopsis oocystifor- mis, Scenedesmus, Chlorela zofingiensis, braunii Ankistrodesmus, Euglena sanguinea, Bacillus atrophaeus, Blakeslea already have ketolase activity as a starting or wild-type organism.
In einer Ausführungsform des erfindungsgemäßen Verfahrens werden daher als Ausgangsorganismen Organismen verwendet, die bereits als Wildtyp oder Ausgangsorganismus eine Ketolaseaktivität aufweisen. In dieser Ausführungsform bewirkt die genetische Veränderung eine Erhöhung der Ketolase-Aktivität im Vergleich zum Wildtyp oder Ausgangsorganismus. Unter Ketolase-Aktivität wird die Enzymaktivität einer Ketolase verstanden. Unter einer Ketolase wird ein Protein verstanden, das die enzymatische Aktivität aufweist, am, gegebenenfalls substituierten, ß-lonon-Ring von Carotinoiden eine Keto- Gruppe einzuführen.In one embodiment of the method according to the invention, organisms are therefore used as starting organisms which already have ketolase activity as a wild type or starting organism. In this embodiment, the genetic modification causes an increase in ketolase activity compared to the wild type or parent organism. Ketolase activity means the enzyme activity of a ketolase. A ketolase is understood to mean a protein which has the enzymatic activity of introducing a keto group on the optionally substituted β-ionone ring of carotenoids.
Insbesondere wird unter einer Ketolase ein Protein verstanden, das die enzymatische Aktivität aufweist, ß-Carotin in Canthaxanthin umzuwandeln.In particular, a ketolase is understood to be a protein which has the enzymatic activity to convert β-carotene into canthaxanthin.
Dementsprechend wird unter Ketolase-Aktivität die in einer bestimmten Zeit durch das Protein Ketolase umgesetzte Menge ß-Carotin bzw. gebildete Menge Canthaxanthin verstanden.Accordingly, ketolase activity is understood to mean the amount of β-carotene or amount of canthaxanthin formed by the protein ketolase in a certain time.
Bei einer erhöhten Ketolase-Aktivität gegenüber dem Wildtyp wird somit im Vergleich zum Wildtyp in einer bestimmten Zeit durch das Protein Ketolase die umgesetzte Men- ge ß-Carotin bzw. die gebildete Menge Canthaxanthin erhöht.With an increased ketolase activity compared to the wild type, the amount of β-carotene converted or the amount of canthaxanthin formed is increased in a certain time by the protein ketolase compared to the wild type.
Vorzugsweise beträgt diese Erhöhung der Ketolase-Aktivität mindestens 5 %, weiter bevorzugt mindestens 20 %, weiter bevorzugt mindestens 50 %, weiter bevorzugt mindestens 100 %, bevorzugter mindestens 300 %, noch bevorzugter mindestens 500 %, insbesondere mindestens 600 % der Ketolase-Aktivität des Wildtyps.This increase in ketolase activity is preferably at least 5%, more preferably at least 20%, more preferably at least 50%, more preferably at least 100%, more preferably at least 300%, even more preferably at least 500%, in particular at least 600% of the ketolase activity of the wild type.
Unter dem Begriff "Wildtyp" wird erfindungsgemäß der entsprechende Ausgangsorganismus verstanden.According to the invention, the term “wild type” is understood to mean the corresponding starting organism.
Je nach Zusammenhang kann unter dem Begriff Organismus" der Ausgangsorganismus (Wildtyp) oder ein erfindungsgemäßer, genetisch veränderter Organismus oder beides verstanden werden.Depending on the context, the term organism can be understood to mean the starting organism (wild type) or a genetically modified organism according to the invention, or both.
Vorzugsweise und insbesondere in Fällen, in denen der Organismus oder der Wildtyp nicht eindeutig zugeordnet werden kann, wird unter "Wildtyp" für die Erhöhung oder Verursachung der Ketolase-Aktivität, für die nachstehend beschriebene Erhöhung der Hydroxylase-Aktivität, für die nachstehend beschriebene Erhöhung der ß-Cyclase- Aktivität und die Erhöhung des Gehalts an Ketocarotinoiden jeweils ein Referenzorganismus verstanden. Dieser Referenzorganimus ist für Mikroorganismen, die bereits als Wildtyp eine Ketolase Aktivität aufweisen, vorzugsweise Haematococcus pluvialis.Preferably and in particular in cases in which the organism or the wild type cannot be clearly assigned, "wild type" is used to increase or cause the ketolase activity, for the increase in hydroxylase activity described below, for the increase described below β-cyclase activity and the increase in the content of ketocarotenoids each understood a reference organism. This reference organism is preferably Haematococcus pluvialis for microorganisms which already have ketolase activity as a wild type.
Dieser Referenzorganismus ist für Mikroorganismen, die als Wildtyp keine Ketolase Aktivität aufweisen, vorzugsweise Blakeslea.This reference organism is preferably Blakeslea for microorganisms which, as a wild type, have no ketolase activity.
Dieser Referenzorganismus ist für Pflanzen, die bereits als Wildtyp eine Ketolase- Aktivität aufweisen, vorzugsweise Adonis aestivalis, Adonis flammeus oder Adonis annuus, besonders bevorzugt Adonis aestivalis.This reference organism is for plants which already have a ketolase activity as a wild type, preferably Adonis aestivalis, Adonis flammeus or Adonis annuus, particularly preferably Adonis aestivalis.
Dieser Referenzorganismus ist für Pflanzen, die als Wildtyp keine Ketolase-Aktivität in Blütenblätter aufweisen, vorzugsweise Tagetes erecta, Tagetes patula, Tagetes lucida, Tagetes pringlei, Tagetes palmeri, Tagetes minuta oder Tagetes campanulata, besonders bevorzugt Tagetes erecta.This reference organism is particularly preferred for plants which have no ketolase activity in petals as a wild type, preferably Tagetes erecta, Tagetes patula, Tagetes lucida, Tagetes pringlei, Tagetes palmeri, Tagetes minuta or Tagetes campanulata, particularly preferably Tagetes erecta.
Die Bestimmung der Ketolase-Aktivität in erfindungsgemäßen genetisch veränderten Organismen und in Wildtyp- bzw. Referenzorganismen erfolgt vorzugsweise unter folgenden Bedingungen:The ketolase activity in genetically modified organisms according to the invention and in wild-type or reference organisms is preferably determined under the following conditions:
Die Bestimmung der Ketolase-Aktivität in Pflanzen- oder Mikroorganismenmaterial erfolgt in Anlehnung an die Methode von Frazer et al., (J. Biol. Chem. 272(10): 6128- 6135, 1997). Die Ketolase-Aktivität in pflanzlichen oder Mikroorganismus-Extrakten wird mit den Substraten ß-Carotin und Canthaxanthin in Gegenwart von Lipid (Sojaleci- thin) und Detergens (Natriumcholat) bestimmt. Substrat/Produkt- Verhältnisse aus den Ketolase-Assays werden mittels HPLC ermittelt.The ketolase activity in plant or microorganism material is determined in accordance with the method of Frazer et al., (J. Biol. Chem. 272 (10): 6128-6135, 1997). The ketolase activity in plant or microorganism extracts is determined with the substrates β-carotene and canthaxanthin in the presence of lipid (soy lecithin) and detergent (sodium cholate). Substrate / product ratios from the ketolase assays are determined by means of HPLC.
Die Erhöhung der Ketolase-Aktivität kann durch verschiedene Wege erfolgen, beispielsweise durch Ausschalten von hemmenden Regulationsmechanismen auf Trans- lations- und Proteinebene oder durch Erhöhung der Genexpression einer Nukleinsäu- re, kodierend eine Ketolase, gegenüber dem Wildtyp, beispielsweise durch Induzierung des Ketolase-Gens durch Aktivatoren oder durch Einbringen von Nukleinsäuren, kodierend eine Ketolase, in den Organismus.The ketolase activity can be increased in various ways, for example by switching off inhibitory regulatory mechanisms at the translation and protein levels or by increasing the gene expression of a nucleic acid encoding a ketolase compared to the wild type, for example by inducing the ketolase gene by activators or by introducing nucleic acids encoding a ketolase into the organism.
Unter Erhöhung der Genexpression einer Nukleinsäure, kodierend eine Ketolase, wird erfindungsgemäß in dieser Ausführungsform auch die Manipulation der Expression der Organismen eigenen endogenen Ketolasen verstanden. Dies kann beispielsweise durch Veränderung der Promotor DNA-Sequenz für Ketolase kodierende Gene erreicht werden. Eine solche Veränderung, die eine veränderte oder vorzugsweise erhöhte Expressionsrate mindestens eines endogenen Ketolase Gens zur Folge hat, kann durch Deletion oder Insertion von DNA Sequenzen erfolgen.Increasing the gene expression of a nucleic acid encoding a ketolase means, in this embodiment, the manipulation of the expression of the organisms' own endogenous ketolases. For example can be achieved by changing the promoter DNA sequence for genes coding for ketolase. Such a change, which results in a changed or preferably increased expression rate of at least one endogenous ketolase gene, can be carried out by deleting or inserting DNA sequences.
Es ist wie vorstehend beschrieben möglich, die Expression mindestens einer endogenen Ketolase durch die Applikation exogener Stimuli zu verändern. Dies kann durch besondere physiologische Bedingungen, also durch die Applikation von Fremdsubstanzen erfolgen.As described above, it is possible to change the expression of at least one endogenous ketolase by applying exogenous stimuli. This can take place through special physiological conditions, ie through the application of foreign substances.
Des weiteren kann eine erhöhte Expression mindestens eines endogenen Ketolase- Gens dadurch erzielt werden, dass ein im Wildtyporganismus nicht vorkommendes oder modifiziertes Regulatorprotein mit dem Promotor dieser Gene in Wechselwirkung tritt.Furthermore, an increased expression of at least one endogenous ketolase gene can be achieved in that a regulatory protein which is not found or modified in the wild-type organism interacts with the promoter of these genes.
Solch ein Regulator kann ein chimäres Protein darstellen, welches aus einer DNA- Bindedomäne und einer Transkriptionsaktivator-Domäne besteht, wie beispielsweise in WO 96/06166 beschrieben.Such a regulator can represent a chimeric protein which consists of a DNA binding domain and a transcription activator domain, as described, for example, in WO 96/06166.
In einer bevorzugten Ausführungsform erfolgt die Erhöhung der Ketolase-Aktivität gegenüber dem Wildtyp durch die Erhöhung der Genexpression einer Nukleinsäure, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.In a preferred embodiment, the ketolase activity is increased compared to the wild type by increasing the gene expression of a nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
In einer weiter bevorzugten Ausführungsform erfolgt die Erhöhung der Genexpression einer Nukleinsäure, kodierend eine Ketolase, durch Einbringen von Nukleinsäuren, die Ketolasen kodieren, in die Organismen, wobei die Ketolasen die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz enthalten, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.In a further preferred embodiment, the gene expression of a nucleic acid encoding a ketolase is increased by introducing nucleic acids encoding ketolases into the organisms, the ketolases having the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
In den erfindungsgemäßen transgenen Organismen liegt also in dieser Ausführungs- form gegenüber dem Wildtyp mindestens ein weiteres Ketolase-Gen vor, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von die- ser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.In this embodiment, at least one further ketolase gene is present in the transgenic organisms according to the invention in comparison to the wild type, encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or one of these This sequence is derived by substitution, insertion or deletion of amino acids and has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
In dieser Ausführungsform weist der erfindungsgemäße genetisch veränderte Organismus dementsprechend mindestens eine exogene (=heterologe) Nukleinsäure, kodierend eine Ketolase, auf oder mindestens zwei endogene Nukleinsäuren, kodierend eine Ketolase, auf, wobei die Ketolasen die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz enthalten, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.In this embodiment, the genetically modified organism according to the invention accordingly has at least one exogenous (= heterologous) nucleic acid, coding for a ketolase, or at least two endogenous nucleic acids, coding for a ketolase, the ketolases having the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
In einer anderen, bevorzugten Ausführungsform des erfindungsgemäßen Verfahrens werden als Ausgangsorganismen Organismen verwendet, die als Wildtyp keine Keto- laseaktivität aufweisen.In another preferred embodiment of the method according to the invention, organisms are used as the starting organisms which, as a wild type, have no ketase activity.
In dieser bevorzugten Ausführungsform verursacht die genetische Veränderung die. Ketolase-Aktivität in den Organismen. Der erfindungsgemäße genetisch veränderte Organismus weist somit in dieser bevorzugten Ausführungsform im Vergleich zum ge- netisch nicht veränderten Wildtyp eine Ketolase-Aktivität auf und ist somit vorzugswei- . se in der Lage, transgen eine Ketolase zu exprimieren, enthaltend die Aminosäurese- quenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.In this preferred embodiment, the genetic modification causes it. Ketolase activity in organisms. In this preferred embodiment, the genetically modified organism according to the invention thus has a ketolase activity in comparison to the genetically unmodified wild type and is therefore preferred. It is able to transgenically express a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
In dieser bevorzugten Ausführungsform erfolgt die Verursachung der Genexpression einer Nukleinsäure, kodierend eine Ketolase, analog zu der vorstehend beschriebenen Erhöhung der Genexpression einer Nukleinsäure.kodierend eine Ketolase, vorzugsweise durch Einbringen von Nukleinsäuren, die Ketolasen kodieren, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist, in den Ausgangsorganismus.In this preferred embodiment, the gene expression of a nucleic acid encoding a ketolase is caused analogously to the above-described increase in gene expression of a nucleic acid. Encoding a ketolase, preferably by introducing nucleic acids encoding ketolases containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has, in the starting organism.
Dazu kann in beiden Ausführungsformen prinzipiell jede Nukleinsäuren, die eine Ketolase kodiert, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion öder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist, verwendet werden.In principle, any nucleic acids encoding a ketolase containing the amino acid sequence SEQ can be used in both embodiments. ID. NO. 2 or one of these Sequence derived by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has to be used.
Die Verwendung der erfindungsgemäßen Nukleinsäuren, kodierend eine Ketolase, führt im erfindungsgemäßen Verfahren überraschenderweise zu Ketocarotinoiden mit einer geringeren Menge an hydroxylierten Nebenprodukten als bei der Verwendung der im Stand der Technik verwendeten Ketolase-Gene.The use of the nucleic acids according to the invention, encoding a ketolase, surprisingly leads to ketocarotenoids with a smaller amount of hydroxylated by-products in the method according to the invention than when using the ketolase genes used in the prior art.
Alle in der Beschreibung erwähnten Nukleinsäuren können beispielsweise eine RNA-, DNA- oder cDNA-Sequenz sein.All nucleic acids mentioned in the description can be, for example, an RNA, DNA or cDNA sequence.
Bei genomischen Ketolase-Sequenzen aus eukaryotischen Quellen, die Introns enthalten, sind für den Fall, dass der Wirtsorganismus nicht in der Lage ist oder nicht in die Lage versetzt werden kann, die entsprechenden Ketolase zu exprimieren, bevorzugt bereits prozessierte Nukleinsäuresequenzen wie die entsprechenden cDNAs zu verwenden.In the case of genomic ketolase sequences from eukaryotic sources which contain introns, if the host organism is unable or unable to express the corresponding ketolase, nucleic acid sequences which have already been processed, such as the corresponding cDNAs, are preferred use.
Beispiele für Nukleinsäuren, kodierend eine Ketolase, und die entsprechenden Ketola- sen, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID.Examples of nucleic acids encoding a ketolase and the corresponding ketolases containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID.
NO. 2 aufweist, die im erfindungsgemäßen Verfahren vorteilhaft verwendet werden können, sind beispielsweise Sequenzen ausNO. 2, which can be used advantageously in the inventive method, are, for example, sequences from
Nostoc sp. Strain PCC7120 (Accession NO: AP003592, BAB74888; Nukleinsäure:Nostoc sp. Strain PCC7120 (Accession NO: AP003592, BAB74888; nucleic acid:
SEQ ID NO: 1, Protein SEQ ID NO: 2),SEQ ID NO: 1, protein SEQ ID NO: 2),
Nostoc punctiforme ATTC 29133, Nukleinsäure: Acc.-No. NZ_AABC01000195, Basen- paar 55,604 bis 55,392 (SEQ ID NO: 3); Protein: Acc.-No. ZP_00111258 (SEQ ID NO: 4) (als putatives Protein annotiert) oderNostoc punctiforme ATTC 29133, nucleic acid: Acc.-No. NZ_AABC01000195, base pair 55.604 to 55.392 (SEQ ID NO: 3); Protein: Acc.-No. ZP_00111258 (SEQ ID NO: 4) (annotated as putative protein) or
Nostoc punctiforme ATTC 29133, Nukleinsäure: Acc.-No. NZ_AABC01000196, Basenpaar 140,571 bis 139,810 (SEQ ID NO: 5), Protein: (SEQ ID NO: 6) (nicht annotiert), Synechococcus sp. WH 8102, Nukleinsäure: Acc.-No. NZ_AABD01000001 , Basenpaar 1 ,354,725-1 ,355,528 (SEQ ID NO: 46), Protein: Acc.-No. ZP_00115639 (SEQ ID NO: 47) (als putatives Protein annotiert),Nostoc punctiforme ATTC 29133, nucleic acid: Acc.-No. NZ_AABC01000196, base pair 140.571 to 139.810 (SEQ ID NO: 5), protein: (SEQ ID NO: 6) (not annotated), Synechococcus sp. WH 8102, nucleic acid: Acc.-No. NZ_AABD01000001, base pair 1, 354.725-1, 355.528 (SEQ ID NO: 46), protein: Acc.-No. ZP_00115639 (SEQ ID NO: 47) (annotated as putative protein),
Nodularia spumigena NSOR10, (Accession NO: AY210783, AAO64399; Nukleinsäure: SEQ ID NO: 52, Protein: SEQ ID NO: 53)Nodularia spumigena NSOR10, (Accession NO: AY210783, AAO64399; Nucleic acid: SEQ ID NO: 52, Protein: SEQ ID NO: 53)
oder von diesen Sequenzen abgeleitete Ketolasesequenzen wie beispielsweiseor ketolase sequences derived from these sequences, for example
die Ketolasen der Sequenz SEQ ID NO: 8 oder 10 und die entsprechenden kodierenden Nukleinsäuresequenzen SEQ ID NO: 7 oder SEQ ID NO: 9, die beispielsweise durch Variation/Mutation aus der Sequenz SEQ ID NO: 4 bzw. SEQ ID NO: 3 hervorgehen,the ketolases of the sequence SEQ ID NO: 8 or 10 and the corresponding coding nucleic acid sequences SEQ ID NO: 7 or SEQ ID NO: 9, which result, for example, from the sequence SEQ ID NO: 4 or SEQ ID NO: 3 by variation / mutation .
die Ketolasen der Sequenz SEQ ID NO: 12 oder 14 und die entsprechenden kodierenden Nukleinsäuresequenzen SEQ ID NO: 11 oder SEQ ID NO: 13, die beispielsweise durch Variation/Mutation aus der Sequenz SEQ ID NO: 6 bzw. SEQ ID NO: 5 hervor- gehen, oderthe ketolases of the sequence SEQ ID NO: 12 or 14 and the corresponding coding nucleic acid sequences SEQ ID NO: 11 or SEQ ID NO: 13, which result, for example, from the sequence SEQ ID NO: 6 or SEQ ID NO: 5 by variation / mutation - go, or
die Ketolasen der Sequenz SEQ ID NO: 49 oder 51 und die entsprechenden kodierenden Nukleinsäuresequenzen SEQ ID NO: 48 oder SEQ ID NO: 50, die beispielsweise durch Variation bzw. Mutation aus der Sequenz SEQ ID NO: 47 bzw. SEQ ID NO: 46 hervorgehen.the ketolases of the sequence SEQ ID NO: 49 or 51 and the corresponding coding nucleic acid sequences SEQ ID NO: 48 or SEQ ID NO: 50, for example by variation or mutation from the sequence SEQ ID NO: 47 or SEQ ID NO: 46 emerge.
Weitere natürliche Beispiele für Ketolasen und Ketolase-Gene, die im erfindungsgemäßen Verfahren verwendet werden können, lassen sich beispielsweise aus verschiedenen Organismen, deren genomische Sequenz bekannt ist, durch Identitätsvergleiche der Aminosäuresequenzen oder der entsprechenden rückübersetzten Nukleinsäuresequenzen aus Datenbanken mit der vorstehend beschriebenen Sequenzen SEQ ID NO: 2 leicht auffinden.Further natural examples of ketolases and ketolase genes that can be used in the method according to the invention can be obtained, for example, from different organisms whose genomic sequence is known by comparing the identity of the amino acid sequences or the corresponding back-translated nucleic acid sequences from databases with the sequences SEQ ID NO described above : 2 easy to find.
Weitere natürliche Beispiele für Ketolasen und Ketolase-Gene lassen sich weiterhin ausgehend von den vorstehend beschriebenen Nukleinsäuresequenzen, insbesondere ausgehend von den Sequenzen SEQ ID NO: 1 aus verschiedenen Organismen, deren genomische Sequenz nicht bekannt ist, durch Hybridisierungstechniken in an sich bekannter Weise leicht auffinden. Die Hybridisierung kann unter moderaten (geringe Stringenz) oder vorzugsweise unter stringenten (hohe Stringenz) Bedingungen erfolgen.Further natural examples of ketolases and ketolase genes can also be easily found using hybridization techniques in a manner known per se, starting from the nucleic acid sequences described above, in particular starting from the sequences SEQ ID NO: 1 from various organisms, the genomic sequence of which is not known. The hybridization can take place under moderate (low stringency) or preferably under stringent (high stringency) conditions.
Solche Hybridisierungsbedingungen sind beispielsweise bei Sambrook, J., Fritsch, E.F., Maniatis, T., in: Molecular Cloning (A Laboratory Manual), 2. Auflage, Cold Spring Harbor Laboratory Press, 1989, Seiten 9.31-9.57 oder in Current Protocols in Molecular Biology, John Wiley & Sons, N.Y. (1989), 6.3.1-6.3.6 beschrieben.Such hybridization conditions are described, for example, in Sambrook, J., Fritsch, EF, Maniatis, T., in: Molecular Cloning (A Laboratory Manual), 2nd edition, Cold Spring Harbor Laboratory Press, 1989, pages 9.31-9.57 or in Current Protocols in Molecular Biology, John Wiley & Sons, NY (1989), 6.3.1-6.3.6.
Beispielhaft können die Bedingungen während des Waschschrittes ausgewählt sein aus dem Bereich von Bedingungen begrenzt von solchen mit geringer Stringenz (mit 2X SSC bei 50_C) und solchen mit hoher Stringenz (mit 0.2X SSC bei 50_C, bevorzugt bei 65_C) (20X SSC: 0,3 M Natriumeitrat, 3 M Natriumchlorid, pH 7.0).For example, the conditions during the washing step can be selected from the range of conditions limited by those with low stringency (with 2X SSC at 50_C) and those with high stringency (with 0.2X SSC at 50_C, preferably at 65_C) (20X SSC: 0, 3 M sodium citrate, 3 M sodium chloride, pH 7.0).
Darüberhinaus kann die Temperatur während des Waschschrittes von moderaten Be- dingungen bei Raumtemperatur, 22°C, bis zu stringenten Bedingungen bei 65°C angehoben werden. sIn addition, the temperature during the washing step can be raised from moderate conditions at room temperature, 22 ° C, to stringent conditions at 65 ° C. s
Beide Parameter, Salzkonzentration und Temperatur, können gleichzeitig variiert werden, auch kann einer der beiden Parameter konstant gehalten und nur der andere vari- iert werden. Während der Hybridisierung können auch denaturierende Agenzien wie zum Beispiel Formamid oder SDS eingesetzt werden. In Gegenwart von 50 % Forma- mid wird die Hybridisierung bevorzugt bei 42°C ausgeführt.Both parameters, salt concentration and temperature, can be varied at the same time, one of the two parameters can also be kept constant and only the other can be varied. Denaturing agents such as formamide or SDS can also be used during hybridization. In the presence of 50% formamide, the hybridization is preferably carried out at 42 ° C.
Einige beispielhafte Bedingungen für Hybridisierung und Waschschritt sind infolge ge- geben:Some exemplary conditions for hybridization and washing step are given as a result:
(1) Hybridiserungsbedingungen mit zum Beispiel(1) Hybridization conditions with, for example
(i) 4X SSC bei 65°C, oder(i) 4X SSC at 65 ° C, or
(ii) 6X SSC bei 45°C, oder(ii) 6X SSC at 45 ° C, or
(iii) 6X SSC bei 68°C, 100 mg/ml denaturierter Fischsperma-DNA, oder(iii) 6X SSC at 68 ° C, 100 mg / ml denatured fish sperm DNA, or
(iv) 6X SSC, 0.5 % SDS, 100 mg/ml denaturierte, fragmentierte Lachssperma-DNA bei 68°C, oder (v) 6XSSC, 0.5 % SDS, 100 mg/ml denaturierte, fragmentierte Lachssperma-DNA, 50 % Formamid bei 42°C, oder(iv) 6X SSC, 0.5% SDS, 100 mg / ml denatured, fragmented salmon sperm DNA at 68 ° C, or (v) 6XSSC, 0.5% SDS, 100 mg / ml denatured, fragmented salmon sperm DNA, 50% formamide at 42 ° C, or
(vi) 50 % Formamid, 4X SSC bei 42_C, oder(vi) 50% formamide, 4X SSC at 42_C, or
(vii) 50 % (vol/vol) Formamid, 0.1 % Rinderserumalbumin, 0.1 % Ficoll, 0.1 % Polyvi- nylpyrrolidon, 50 mM Natriumphosphatpuffer pH 6.5, 750 mM NaCI, 75 mM Natriumcit- rat bei 42°C, oder(vii) 50% (vol / vol) formamide, 0.1% bovine serum albumin, 0.1% Ficoll, 0.1% polyvinyl pyrrolidone, 50 mM sodium phosphate buffer pH 6.5, 750 mM NaCI, 75 mM sodium citrate at 42 ° C, or
(viii) 2X oder 4X SSC bei 50°C (moderate Bedingungen), oder(viii) 2X or 4X SSC at 50 ° C (moderate conditions), or
(ix) 30 bis 40 % Formamid, 2X oder 4X SSC bei 42° (moderate Bedingungen).(ix) 30 to 40% formamide, 2X or 4X SSC at 42 ° (moderate conditions).
(2) Waschschritte für jeweils 10 Minuten mit zum Beispiel(2) washing steps for 10 minutes each with for example
(i) 0.015 M NaCI/0.0015 M Natriumcitrat/0.1 % SDS bei 50°C, oder(i) 0.015 M NaCI / 0.0015 M sodium citrate / 0.1% SDS at 50 ° C, or
(ii) 0.1X SSC bei 65°C, oder(ii) 0.1X SSC at 65 ° C, or
(iii) 0.1 X SSC, 0.5 % SDS bei 68°C, oder(iii) 0.1 X SSC, 0.5% SDS at 68 ° C, or
(iv) 0.1 X SSC, 0.5 % SDS, 50 % Formamid bei 42°C, oder(iv) 0.1 X SSC, 0.5% SDS, 50% formamide at 42 ° C, or
(v) 0.2X SSC, 0.1 % SDS bei 42°C, oder(v) 0.2X SSC, 0.1% SDS at 42 ° C, or
(vi) 2X SSC bei 65°C (moderate Bedingungen).(vi) 2X SSC at 65 ° C (moderate conditions).
In einer bevorzugten Ausführungsform der erfindungsgemäßen Verfahren bringt man Nukleinsäuren ein, die eine Ketolase kodieren, enthaltend die Aminosäuresequenz SEQ ID NO: 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 50%, vorzugsweise mindestens 60%, vorzugsweise mindestens 65 %, vorzugsweise mindestens 70 %, bevorzugter mindestens 75 %, bevorzugter mindestens 80 %, bevorzugter mindestens 85 %, bevorzugter mindestens 90 %, bevorzugter mindestens 95 %, be- sonders bevorzugt mindestens 98 % auf Aminosäureebene mit der Sequenz SEQ ID NO: 2 aufweist. Dabei kann es sich um eine natürliche Ketolase-Sequenz handeln, die wie vorstehend beschrieben durch Identitätsvergleich der Sequenzen aus anderen Organismen gefunden werden kann oder um eine künstliche Ketolase-Sequenz, die ausgehend von der Sequenz SEQ ID NO: 2 durch künstliche Variation, beispielsweise durch Substitution, Insertion oder Deletion von Aminosäuren abgewandelt wurde.In a preferred embodiment of the method according to the invention, nucleic acids encoding a ketolase are introduced, containing the amino acid sequence SEQ ID NO: 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which preferably has an identity of at least 50% at least 60%, preferably at least 65%, preferably at least 70%, more preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95%, particularly preferably at least 98% at the amino acid level with the Sequence SEQ ID NO: 2 has. This can be a natural ketolase sequence that can be found as described above by comparing the identity of the sequences from other organisms or an artificial ketolase sequence that can be started from the sequence SEQ ID NO: 2 by artificial variation, for example by Substitution, insertion or deletion of amino acids has been modified.
Unter dem Begriff "Substitution" ist in der Beschreibung der Austausch einer oder mehrerer Aminosäuren durch eine oder mehrere Aminosäuren zu verstehen. Bevorzugt werden sog. konservative Austausche durchgeführt, bei denen die ersetzte Aminosäu- re eine ähnliche Eigenschaft hat wie die ursprüngliche Aminosäure, beispielsweise Austausch von Glu durch Asp, Gin durch Asn, Val durch lle, Leu durch lle, Ser durch Thr.In the description, the term “substitution” is to be understood as meaning the replacement of one or more amino acids by one or more amino acids. So-called conservative exchanges are preferably carried out, in which the replaced amino acid has a similar property to the original amino acid, for example replacement of Glu by Asp, Gin by Asn, Val by Ile, Leu by Ile, Ser by Thr.
Deletion ist das Ersetzen einer Aminosäure durch eine direkte Bindung. Bevorzugte Positionen für Deletionen sind die Termini des Polypeptides und die Verknüpfungen zwischen den einzelnen Proteindomänen.Deletion is the replacement of an amino acid with a direct link. Preferred positions for deletions are the termini of the polypeptide and the links between the individual protein domains.
Insertionen sind Einfügungen von Aminosäuren in die Polypeptidkette, wobei formal eine direkte Bindung durch ein oder mehrere Aminosäuren ersetzt wird.Inserts are insertions of amino acids into the polypeptide chain, with a direct bond being formally replaced by one or more amino acids.
Unter Identität zwischen zwei Proteinen wird die Identität der Aminosäuren über die jeweils gesamte Proteinlänge verstanden, insbesondere die Identität die durch Vergleich mit Hilfe der Vector NTI Suite 7.1 Software der Firma Informax (USA) unter Anwendung der Clustal Methode (Higgins DG, Sharp PM. Fast and sensitive multiple se- quence alignments on a microcomputer. Comput Appl. Biosci. 1989 Apr;5(2):151-1) unter Einstellung folgender Parameter berechnet wird:Identity between two proteins is understood to mean the identity of the amino acids over the respective total protein length, in particular the identity which is obtained by comparison using the Vector NTI Suite 7.1 software from Informax (USA) using the Clustal method (Higgins DG, Sharp PM.Fast and sensitive multiple sequence alignments on a microcomputer. Comput Appl. Biosci. 1989 Apr; 5 (2): 151-1) is calculated using the following parameters:
Multiple alignment parameter:Multiple alignment parameters:
Gap opening penalty 10 Gap extension penalty 10Gap opening penalty 10 Gap extension penalty 10
Gap Separation penalty ränge 8Gap Separation penalty ranks 8th
Gap Separation penalty offGap separation penalty off
% identity for alignment delay 40% identity for alignment delay 40
Residue specific gaps off Hydrophilic residue gap offResidue specific gaps off Hydrophilic residue gap off
Transition weighing 0 Pairwise alignment parameter: FAST algorithm on K-tuple size 1Transition weighing 0 Pairwise alignment parameter: FAST algorithm on K-tuple size 1
Gap penalty 3 Window size 5Gap penalty 3 window size 5
Number of best diagonals 5Number of best diagonals 5
Unter einer Ketolase, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ ID NO: 2 aufweist, wird dementsprechend eine Ketolase verstan- den, die bei einem Vergleich seiner Sequenz mit der Sequenz SEQ ID NO: 2, insbesondere nach obigen Programmlogarithmus mit obigem Parametersatz eine Identität von mindestens 42 % aufweist.A ketolase which has an identity of at least 42% at the amino acid level with the sequence SEQ ID NO: 2 is accordingly understood to be a ketolase which, when comparing its sequence with the sequence SEQ ID NO: 2, in particular according to the above program logarithm with the above parameter set has an identity of at least 42%.
Beispielsweise weist nach obigen Programmlogarithmus mit obigem Parametersatz die Sequenz der Ketolase aus Nostoc punctiforme ATTC 29133 (SEQ ID NO: 4) mit der Sequenz der Ketolase aus Nostoc sp. Strain PCC7120 (SEQ ID NO: 2) eine Identität von 65% auf.For example, according to the above program logarithm with the above set of parameters, the sequence of the ketolase from Nostoc punctiform ATTC 29133 (SEQ ID NO: 4) with the sequence of the ketolase from Nostoc sp. Strain PCC7120 (SEQ ID NO: 2) has an identity of 65%.
Die Sequenz der zweiten Ketolase aus Nostoc punctiforme ATTC 29133 (SEQ ID NO: 6) weist mit der Sequenz der Ketolase aus Nostoc sp. Strain PCC7120 (SEQ ID NO: 2) beispielsweise eine Identität von 58% auf.The sequence of the second ketolase from Nostoc punctiform ATTC 29133 (SEQ ID NO: 6) with the sequence of the ketolase from Nostoc sp. Strain PCC7120 (SEQ ID NO: 2), for example, has an identity of 58%.
Die Sequenz der Ketolase aus Synechococcus sp. WH 8102 (SEQ ID NO: 47) weist mit der Sequenz der Ketolase aus Nostoc sp. Strain PCC7120 (SEQ ID NO: 2) bei- spielsweise eine Identität von 44% auf.The sequence of the ketolase from Synechococcus sp. WH 8102 (SEQ ID NO: 47) with the sequence of the ketolase from Nostoc sp. Strain PCC7120 (SEQ ID NO: 2), for example, has an identity of 44%.
Geeignete Nukleinsäuresequenzen sind beispielsweise durch Rückübersetzung der Polypeptidsequenz gemäß dem genetischen Code erhältlich.Suitable nucleic acid sequences can be obtained, for example, by back-translating the polypeptide sequence in accordance with the genetic code.
Bevorzugt werden dafür solche Codons verwendet, die entsprechend der Organismusspezifischen "codon usage" häufig verwendet werden. Die "codon usage" lässt sich anhand von Computerauswertungen anderer, bekannter Gene der betreffenden Organismen leicht ermitteln.Those codons are preferably used for this which are frequently used in accordance with the organism-specific "codon usage". The "codon usage" can easily be determined on the basis of computer evaluations of other, known genes of the organisms in question.
In einer besonders bevorzugten Ausführungsform bringt man eine Nukleinsäure, enthaltend die Sequenz SEQ ID NO: 1 , in den Organismus ein. Alle vorstehend erwähnten Ketolase-Gene sind weiterhin in an sich bekannter Weise durch chemische Synthese aus den Nukleotidbausteinen wie beispielsweise durch Fragmentkondensation einzelner überlappender, komplementärer Nukleinsäurebau- steine der Doppelhelix herstellbar. Die chemische Synthese von Oligonukleotiden kann beispielsweise, in bekannter Weise, nach der Phosphoamiditmethode (Voet, Voet, 2. Auflage, Wiley Press New York, S. 896-897) erfolgen. Die Anlagerung synthetischer Oligonukleotide und Auffüllen von Lücken mithilfe des Klenow-Fragmentes der DNA- Polymerase und Ligationsreaktionen sowie allgemeine Klonierungsverfahren werden in Sambrook et al. (1989), Molecular cloning: A laboratory manual, Cold Spring Harbor Laboratory Press, beschrieben.In a particularly preferred embodiment, a nucleic acid containing the sequence SEQ ID NO: 1 is introduced into the organism. All of the above-mentioned ketolase genes can also be produced in a manner known per se by chemical synthesis from the nucleotide building blocks, for example by fragment condensation of individual overlapping, complementary nucleic acid building blocks of the double helix. The chemical synthesis of oligonucleotides can be carried out, for example, in a known manner using the phosphoamidite method (Voet, Voet, 2nd edition, Wiley Press New York, pp. 896-897). The attachment of synthetic oligonucleotides and the filling of gaps using the Klenow fragment of DNA polymerase and ligation reactions as well as general cloning methods are described in Sambrook et al. (1989) Molecular cloning: A laboratory manual, Cold Spring Harbor Laboratory Press.
Die Sequenz der Ketolase aus Nostoc sp. Strain PCC7120 (SEQ ID NO: 2) weist mit den Sequenzen der Ketolasen die in den Verfahren des Standes der Technik verwen- det werden eine Identität von 39% (Agrobacterium aurantiacum (EP 735 137, Accession NO: D58420), 40% (Alcaligenes sp. PC-1 (EP 735137, Accession NO: D58422) und 20 bis 21 % (Haematococcus pluvialis Flotow em. Wille und Haematoccus pluvialis,: NIES-144 (EP 725137, WO 98/18910 und Lotan et al, FEBS Letters 1995, 364, 125- 128, Accession NO: X86782 und D45881) auf.The sequence of the ketolase from Nostoc sp. Strain PCC7120 (SEQ ID NO: 2) has an identity of 39% (Agrobacterium aurantiacum (EP 735 137, Accession NO: D58420), 40% (Alcaligenes) with the sequences of the ketolases used in the methods of the prior art sp. PC-1 (EP 735137, Accession NO: D58422) and 20 to 21% (Haematococcus pluvialis Flotow em. Wille and Haematoccus pluvialis ,: NIES-144 (EP 725137, WO 98/18910 and Lotan et al, FEBS Letters 1995 , 364, 125-128, Accession NO: X86782 and D45881).
In einer bevorzugten Ausführungsform werden Organismen kultiviert, die gegenüber dem Wildtyp zusätzlich zur erhöhten Ketolase-Aktivität eine erhöhte Hydroxylase- Aktivität und/oder ß-Cyclase-Aktivität aufweisen.In a preferred embodiment, organisms are cultivated which, in addition to the increased ketolase activity, have an increased hydroxylase activity and / or β-cyclase activity compared to the wild type.
Unter Hydroxylase-Aktivität wird die Enzymaktivität einer Hydroxylase verstanden.Hydroxylase activity means the enzyme activity of a hydroxylase.
Unter einer Hydroxylase wird ein Protein verstanden, das die enzymatische Aktivität aufweist, am, gegebenenfalls substituierten, ß-lonon-Ring von Carotinoiden eine Hydroxy-Gruppe einzuführen.A hydroxylase is understood to mean a protein which has the enzymatic activity of introducing a hydroxyl group on the optionally substituted β-ionone ring of carotenoids.
Insbesondere wird unter einer Hydroxylase ein Protein verstanden, das die enzymatische Aktivität aufweist, ß-Carotin in Zeaxanthin oder Canthaxanthin inIn particular, a hydroxylase is understood to mean a protein which has the enzymatic activity, β-carotene in zeaxanthin or canthaxanthin in
Astaxanthin umzuwandeln. Dementsprechend wird unter Hydroxylase-Aktivität die in einer bestimmten Zeit durch das Protein Hydroxylase umgesetzte Menge ß-Carotin oder Canthaxanthin bzw. gebildete Menge Zeaxanthin oder Astaxanthin verstanden.Convert astaxanthin. Accordingly, hydroxylase activity is understood to mean the amount of β-carotene or canthaxanthin converted or the amount of zeaxanthin or astaxanthin formed in a certain time by the protein hydroxylase.
Bei einer erhöhten Hydroxylase-Aktivität gegenüber dem Wildtyp wird somit im Vergleich zum Wildtyp in einer bestimmten Zeit durch das Protein Hydroxylase die umgesetzte Menge ß-Carotin oder Canthaxantin bzw. die gebildete Menge Zeaxanthin oder Astaxanthin erhöht.If the hydroxylase activity is higher than that of the wild type, the amount of β-carotene or canthaxantine or the amount of zeaxanthin or astaxanthin formed is increased by the protein hydroxylase in a certain time compared to the wild type.
Vorzugsweise beträgt diese Erhöhung der Hydroxylase-Aktivität mindestens 5 %, weiter bevorzugt mindestens 20 %, weiter bevorzugt mindestens 50 %, weiter bevorzugt mindestens 100 %, bevorzugter mindestens 300 %, noch bevorzugter mindestens 500 %, insbesondere mindestens 600 % der Hydroxylase-Aktivität des Wildtyps.This increase is preferably the hydroxylase activity of at least 5%, more preferably at least 20%, more preferably at least 50%, more preferably at least 100%, more preferably at least 300%, more preferably at least 500%, especially at least 600% of the hydroxylase activity of the wild type.
Unter ß-Cyclase-Aktivität wird die Enzymaktivität einer ß-Cyclase verstanden.Β-cyclase activity means the enzyme activity of a β-cyclase.
Unter einer ß-Cyclase wird ein Protein verstanden, das die enzymatische Aktivität auf- weist, einen endständigen, linearen Rest von Lycopin in einen ß-lonon-Ring zu überführen.A β-cyclase is understood to mean a protein which has the enzymatic activity to convert a terminal, linear residue of lycopene into a β-ionone ring.
Insbesondere wird unter einer ß-Cyclase ein Protein verstanden, das die enzymatische Aktivität aufweist, γ-Carotin in ß-Carotin umzuwandeln.In particular, a β-cyclase is understood to be a protein which has the enzymatic activity to convert γ-carotene into β-carotene.
Dementsprechend wird unter ß-Cyclase-Aktivität die in einer bestimmten Zeit durch das Protein ß-Cyclase umgesetzte Menge γ-Carotin bzw. gebildete Menge ß-Carotin verstanden.Accordingly, ß-cyclase activity is understood to mean the amount of γ-carotene converted or the amount of ß-carotene formed in a certain time by the protein ß-cyclase.
Bei einer erhöhten ß-Cyclase -Aktivität gegenüber dem Wildtyp wird somit im Vergleich zum Wildtyp in einer bestimmten Zeit durch das Protein ß-Cyclase die umgesetzte Menge an Lycopin bzw. γ-Carotin oder die gebildete Menge an γ-Carotin aus Lycopin bzw. die gebildete Menge an ß-Carotin aus γ-Carotin erhöht.With an increased ß-cyclase activity compared to the wild type, the amount of lycopene or γ-carotene converted or the amount of γ-carotene formed from lycopene or the formed amount of ß-carotene from γ-carotene increased.
Vorzugsweise beträgt diese Erhöhung der ß-Cyclase-Aktivität mindestens 5 %, weiter bevorzugt mindestens 20 %, weiter bevorzugt mindestens 50 %, weiter bevorzugt min- destens 100 %, bevorzugter mindestens 300 %, noch bevorzugter mindestens 500 %, insbesondere mindestens 600 % der ß-Cyclase-Aktivität des Wildtyps.This increase in the β-cyclase activity is preferably at least 5%, more preferably at least 20%, more preferably at least 50%, more preferably min. at least 100%, more preferably at least 300%, even more preferably at least 500%, in particular at least 600% of the β-cyclase activity of the wild type.
Die Bestimmung der Hydroxylase-Aktivität in erfindungsgemäßen genetisch veränder- ten Organismen und in Wildtyp- bzw. Referenzorganismen erfolgt vorzugsweise unter folgenden Bedingungen:The hydroxylase activity in genetically modified organisms according to the invention and in wild-type or reference organisms is preferably determined under the following conditions:
Die Aktivität der Hydroxylase wird nach Bouvier et al. (Biochim. Biophys. Acta 1391 (1998), 320-328) in vitro bestimmt. Es wird zu einer bestimmten Menge an Organis- musextrakt Ferredoxin, Ferredoxin-NADP Oxidoreductase, Katalase, NADPH sowie ß- Carotin mit Mono- und Digalaktosylglyzeriden zugegeben.The activity of the hydroxylase is according to Bouvier et al. (Biochim. Biophys. Acta 1391 (1998), 320-328) in vitro. Ferredoxin, ferredoxin-NADP oxidoreductase, catalase, NADPH and β-carotene with mono- and digalactosylglycerides are added to a certain amount of organism extract.
Besonders bevorzugt erfolgt die Bestimmung der Hydroxylase-Aktivität unter folgenden Bedingungen nach Bouvier, Keller, d'Harlingue und Camara (Xanthophyll bio- synthesis: molecular and f unctional characterization of carotenoid hydroxylases f rom pepper fruits (Capsicum annuum L; Biochim. Biophys. Acta 1391 (1998), 320-328):The hydroxylase activity is particularly preferably determined under the following conditions according to Bouvier, Keller, d'Harlingue and Camara (Xanthophyll bio-synthesis: molecular and functional identification of carotenoid hydroxylases for rom pepper fruits (Capsicum annuum L; Biochim. Biophys. Acta 1391 (1998), 320-328):
Der in-vitro Assay wird in einem Volumen von 0.250 ml durchgeführt. Der Ansatz enthält 50 mM Kaliumphosphat (pH 7.6), 0.025 mg Ferredoxin von Spinat, 0.5 Einheiten Ferredoxin-NADP+ Oxidoreduktase von Spinat, 0.25 mM NADPH, 0.010 mg beta-The in vitro assay is carried out in a volume of 0.250 ml. The mixture contains 50 mM potassium phosphate (pH 7.6), 0.025 mg ferredoxin from spinach, 0.5 units ferredoxin-NADP + oxidoreductase from spinach, 0.25 mM NADPH, 0.010 mg beta
Carotin (in 0.1 mg Tween 80 emulgiert), 0.05 mM einer Mischung von Mono- und Digalaktosylglyzeriden (1 :1), 1 Einheit Katalyse, 200 Mono- und Digalaktosylglyzeriden (1 :1), 0.2 mg Rinderserumalbumin und Organismusextrakt in unterschiedlichem Volumen. Die Reaktionsmischung wird 2 Stunden bei 30°C inkubiert. Die Reaktionsproduk- te werden mit organischem Lösungsmittel wie Aceton oder Chloroform/Methanol (2:1) extrahiert und mittels HPLC bestimmt.Carotene (emulsified in 0.1 mg Tween 80), 0.05 mM of a mixture of mono- and digalactosylglycerides (1: 1), 1 unit of catalysis, 200 mono- and digalactosylglycerides (1: 1), 0.2 mg bovine serum albumin and organism extract in different volumes. The reaction mixture is incubated at 30 ° C for 2 hours. The reaction products are extracted with organic solvent such as acetone or chloroform / methanol (2: 1) and determined by HPLC.
Die Bestimmung der ß-Cyclase-Aktivität in erfindungsgemäßen genetisch veränderten Organismen und in Wildtyp- bzw. Referenzorganismen erfolgt vorzugsweise unter fol- genden Bedingungen:The β-cyclase activity in genetically modified organisms according to the invention and in wild-type or reference organisms is preferably determined under the following conditions:
Die Aktivität der ß-Cyclase wird nach Fräser und Sandmann (Biochem. Biophys. Res. Comm. 185(1) (1992) 9-15)/n vitro bestimmt. Es werden zu einer bestimmten Menge an Organismusextrakt Kaliumphosphat als Puffer (pH 7.6), Lycopin als Substrat, Stro- maprotein von Paprika, NADP+, NADPH und ATP zugegeben. Besonders bevorzugt erfolgt die Bestimmung der ß-Cyclase -Aktivität unter folgenden Bedingungen nach Bouvier, d'Harlingue und Camara (Molecular Analysis of carotenoid cyclae inhibition; Arch. Biochem. Biophys. 346(1) (1997) 53-64):The activity of the β-cyclase is determined according to Fräser and Sandmann (Biochem. Biophys. Res. Comm. 185 (1) (1992) 9-15) / n vitro. Potassium phosphate as a buffer (pH 7.6), lycopene as a substrate, stomaprotein from paprika, NADP +, NADPH and ATP are added to a certain amount of organism extract. The β-cyclase activity is particularly preferably determined under the following conditions according to Bouvier, d'Harlingue and Camara (Molecular Analysis of carotenoid cyclae inhibition; Arch. Biochem. Biophys. 346 (1) (1997) 53-64):
Der in-vitro Assay wird in einem Volumen von 250 μl Volumen durchgeführt. Der Ansatz enthält 50 mM Kaliumphosphat (pH 7.6), unterschiedliche Mengen an Organismusextrakt, 20 nM Lycopin, 250 μg an chromoplastidärem Stromaprotein aus Paprika, 0.2 mM NADP+, 0.2 mM NADPH und 1 mM ATP. NADP/NADPH und ATP werden in 10 ml Ethanol mit 1 mg Tween 80 unmittelbar vor der Zugabe zum Inkubationsmedium gelöst. Nach einer Reaktionszeit von 60 Minuten bei 30°C wird die Reaktion durch Zugabe von Chloroform/Methanol (2:1) beendet. Die in Chloroform extrahierten Reaktionsprodukte werden mittels HPLC analysiert.The in vitro assay is carried out in a volume of 250 μl volume. The mixture contains 50 mM potassium phosphate (pH 7.6), different amounts of organism extract, 20 nM lycopene, 250 μg of chromoplastid stromal protein from paprika, 0.2 mM NADP +, 0.2 mM NADPH and 1 mM ATP. NADP / NADPH and ATP are dissolved in 10 ml ethanol with 1 mg Tween 80 immediately before adding to the incubation medium. After a reaction time of 60 minutes at 30 ° C., the reaction is terminated by adding chloroform / methanol (2: 1). The reaction products extracted in chloroform are analyzed by HPLC.
Ein alternativer Assay mit radioaktivem Substrat ist beschrieben in Fräser und Sand- mann (Biochem. Biophys. Res. Comm. 185(1 ) (1992) 9-15).An alternative assay with a radioactive substrate is described in Fräser and Sandmann (Biochem. Biophys. Res. Comm. 185 (1) (1992) 9-15).
Die Erhöhung der Hydroxylase-Aktivität und/oder ß-Cyclase-Aktivität kann durch verschiedene Wege erfolgen, beispielsweise durch Ausschalten von hemmenden Regulationsmechanismen auf Expressions- und Proteinebene oder durch Erhöhung der Ge- nexpression von Nukleinsäuren, kodierend eine Hydroxylase, und/oder von Nukleinsäuren, kodierend eine ß-Cyclase, gegenüber dem Wildtyp.The hydroxylase activity and / or β-cyclase activity can be increased in various ways, for example by switching off inhibitory regulatory mechanisms at the expression and protein level or by increasing the gene expression of nucleic acids encoding a hydroxylase and / or of nucleic acids , encoding a β-cyclase, compared to the wild type.
Die Erhöhung der Genexpression der Nukleinsäuren, kodierend eine Hydroxylase, und/oder die Erhöhung der Genexpression der Nukleinsäure, kodierend eine ß- Cyclase, gegenüber dem Wildtyp kann ebenfalls durch verschiedene Wege erfolgen, beispielsweise durch Induzierung des Hydroxylase-Gens und/oder ß-Cyclase-Gens durch Aktivatoren oder durch Einbringen von einer oder mehrerer Hydroxylase- Genkopien und/oder ß-Cyclase-Genkopien, also durch Einbringen mindestens einer Nukleinsäure, kodierend eine Hydroxylase, und/oder mindestens einer Nukleinsäure, kodierend eine ß-Cyclase, in den Organismus.The increase in the gene expression of the nucleic acids encoding a hydroxylase and / or the increase in the gene expression of the nucleic acid encoding a β-cyclase compared to the wild type can also be achieved in various ways, for example by inducing the hydroxylase gene and / or β-cyclase Gene by activators or by introducing one or more hydroxylase gene copies and / or β-cyclase gene copies, ie by introducing at least one nucleic acid encoding a hydroxylase and / or at least one nucleic acid encoding a β-cyclase into the organism ,
Unter Erhöhung der Genexpression einer Nukleinsäure, kodierend eine Hydroxylase und/oder ß-Cyclase, wird erfindungsgemäß auch die Manipulation der Expression der Organismus eigenen endogenen Hydroxylase und/oder ß-Cyclase verstanden. Dies kann beispielsweise durch Veränderung der Promotor DNA-Sequenz für Hydroxy- lasen und/oder ß-Cyclasen kodierende Gene erreicht werden. Eine solche Veränderung, die eine erhöhte Expressionsrate des Gens zur Folge hat, kann beispielsweise durch Deletion oder Insertion von DNA Sequenzen erfolgen.Increasing the gene expression of a nucleic acid encoding a hydroxylase and / or β-cyclase means according to the invention the manipulation of the expression of the organism's own endogenous hydroxylase and / or β-cyclase. This can be achieved, for example, by changing the promoter DNA sequence for genes encoding hydroxylases and / or β-cyclases. Such a change, which results in an increased expression rate of the gene, can take place, for example, by deleting or inserting DNA sequences.
Es ist, wie vorstehend beschrieben, möglich, die Expression der endogenen Hydroxylase und/oder ß-Cyclase durch die Applikation exogener Stimuli zu verändern. Dies kann durch besondere physiologische Bedingungen, also durch die Applikation von Fremdsubstanzen erfolgen.As described above, it is possible to change the expression of the endogenous hydroxylase and / or β-cyclase by applying exogenous stimuli. This can take place through special physiological conditions, ie through the application of foreign substances.
Des weiteren kann eine veränderte bzw. erhöhte Expression eines endogenen Hydroxylase- und/oder ß-Cyclase-Gens dadurch erzielt werden, dass ein im nicht transformierten Organismus nicht vorkommendes Regulator-Protein mit dem Promotor dieses Gens in Wechselwirkung tritt.Furthermore, an altered or increased expression of an endogenous hydroxylase and / or β-cyclase gene can be achieved in that a regulator protein which does not occur in the non-transformed organism interacts with the promoter of this gene.
Solch ein Regulator kann ein chimäres Protein darstellen, welches aus einer DNA- Bindedomäne und einer Transkriptionsaktivator-Domäne besteht, wie beispielsweise inSuch a regulator can represent a chimeric protein which consists of a DNA binding domain and a transcription activator domain, as for example in
WO 96/06166 beschrieben.WO 96/06166.
In einer bevorzugten Ausführungsform erfolgt die Erhöhung der Genexpression einer Nukleinsäure, kodierend eine Hydroxylase, und/oder die Erhöhung der Genexpression einer Nukleinsäure, kodierend eine ß-Cyclase, durch Einbringen von mindestens einer Nukleinsäure, kodierend eine Hydroxylase, und/oder durch Einbringen von mindestens einer Nukleinsäure, kodierend eine ß-Cyclase, in den Organismus.In a preferred embodiment, the gene expression of a nucleic acid encoding a hydroxylase is increased and / or the gene expression of a nucleic acid encoding a β-cyclase is increased by introducing at least one nucleic acid encoding a hydroxylase and / or by introducing at least one a nucleic acid encoding a β-cyclase in the organism.
Dazu kann prinzipiell jedes Hydroxylase-Gen bzw. jedes ß-Cyclase-Gen, also jede Nukleinsäure, die eine Hydroxylase und jede Nukleinsäure, die eine ß-Cyclase kodiert, verwendet werden.In principle, any hydroxylase gene or each β-cyclase gene, that is to say any nucleic acid which codes for a hydroxylase and any nucleic acid which codes for a β-cyclase, can be used for this purpose.
Bei genomischen Hydroxylase-bzw. ß-Cyclase-Nukleinsäure-Sequenzen aus eukaryo- tischen Quellen, die Introns enthalten, sind für den Fall, dass der Wirtsorganismus nicht in der Lage ist oder nicht in die Lage versetzt werden kann, die entsprechende Hydroxylase bzw. ß-Cyclase zu exprimieren, bevorzugt bereits prozessierte Nukleinsäuresequenzen, wie die entsprechenden cDNAs, zu verwenden. Ein Beispiel für ein Hydroxylase-Gen ist eine Nukleinsäure, kodierend eine Hydroxylase, aus Haematococcus pluvialis, Accession AX038729, WO 0061764); (Nukleinsäure: SEQ ID NO: 15, Protein: SEQ ID NO: 16).With genomic hydroxylase or. β-cyclase nucleic acid sequences from eukaryotic sources which contain introns are, in the event that the host organism is unable or cannot be able to express the corresponding hydroxylase or β-cyclase, preferably to use already processed nucleic acid sequences, such as the corresponding cDNAs. An example of a hydroxylase gene is a nucleic acid encoding a hydroxylase from Haematococcus pluvialis, accession AX038729, WO 0061764); (Nucleic acid: SEQ ID NO: 15, protein: SEQ ID NO: 16).
Ein Beispiel für ein ß-Cyclase-Gen ist eine Nukleinsäure, kodierend eine ß-Cyclase aus Tomate (Accession X86452).(Nukleinsäure: SEQ ID NO: 17, Protein: SEQ ID NO: 18).An example of a β-cyclase gene is a nucleic acid encoding a β-cyclase from tomato (Accession X86452) (nucleic acid: SEQ ID NO: 17, protein: SEQ ID NO: 18).
In den erfindungsgemäßen bevorzugten transgenen Organismen liegt also in dieser bevorzugten Ausführungsform gegenüber dem Wildtyp mindestens ein weiteres Hydroxylase-Gen und/oder ß-Cyclase-Gen vor.In this preferred embodiment, the preferred transgenic organisms according to the invention therefore have at least one further hydroxylase gene and / or β-cyclase gene compared to the wild type.
In dieser bevorzugten Ausführungsform weist der genetisch veränderte Organismus beispielsweise mindestens eine exogene Nukleinsäure, kodierend eine Hydroxylase, oder mindestens zwei endogene Nukleinsäuren, kodierend eine Hydroxylase und/oder mindestens eine exogene Nukleinsäure, kodierend eine ß-Cyclase, oder mindestens zwei endogene Nukleinsäuren, kodierend eine ß-Cyclase, auf.In this preferred embodiment, the genetically modified organism has, for example, at least one exogenous nucleic acid encoding a hydroxylase, or at least two endogenous nucleic acids encoding a hydroxylase and / or at least one exogenous nucleic acid encoding a β-cyclase, or at least two endogenous nucleic acids encoding one β-cyclase.
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Bevorzugt verwendet man in vorstehend beschriebener bevorzugter Ausführungsform als Hydroxylase-Gene Nukleinsäuren, die Proteine kodieren, -enthaltend die Aminosäu- resequenz SEQ ID NO: 16 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 30 %, vorzugsweise mindestens 50 %, bevorzugter mindestens 70%, noch bevorzugter mindestens 90 %, am bevorzugtesten mindestens 95 % auf Aminosäureebene mit derIn the preferred embodiment described above, nucleic acids encoding proteins are preferably used as the hydroxylase genes, containing the amino acid sequence SEQ ID NO: 16 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids and having an identity of at least 30%, preferably at least 50%, more preferably at least 70%, even more preferably at least 90%, most preferably at least 95% at the amino acid level with the
Sequenz SEQ ID NO: 16, und die die enzymatische Eigenschaft einer Hydroxylase aufweisen.Sequence SEQ ID NO: 16, and which have the enzymatic property of a hydroxylase.
Weitere Beispiele für Hydroxylasen und Hydroxylase-Gene lassen sich beispielsweise aus verschiedenen Organismen, deren genomische Sequenz bekannt ist, wie vorstehend beschrieben durch Homologievergleiche der Aminosäuresequenzen oder der entsprechenden rückübersetzten Nukleinsäuresequenzen aus Datenbanken mit der SEQ ID. NO: 16 leicht auffinden.Further examples of hydroxylases and hydroxylase genes can be obtained, for example, from various organisms whose genomic sequence is known, as described above, by comparing the homology of the amino acid sequences or the corresponding back-translated nucleic acid sequences from databases with the SEQ ID. NO: 16 easy to find.
Weitere Beispiele für Hydroxylasen und Hydroxylase-Gene lassen sich weiterhin beispielsweise ausgehend von der Sequenz SEQ ID NO: 15 aus verschiedenen Organis- men deren genomische Sequenz nicht bekannt ist, wie vorstehend beschrieben, durch Hybridisierungs- und PCR-Techniken in an sich bekannter Weise leicht auffinden.Further examples of hydroxylases and hydroxylase genes can also be found, for example, starting from the sequence SEQ ID NO: 15 from various organisms. whose genomic sequence is not known, as described above, can easily be found by hybridization and PCR techniques in a manner known per se.
In einer weiter besonders bevorzugten Ausführungsform werden zur Erhöhung der Hydroxylase-Aktivität Nukleinsäuren in Organismen eingebracht, die Proteine kodieren, enthaltend die Aminosäuresequenz der Hydroxylase der Sequenz SEQ ID NO: 16.In a further particularly preferred embodiment, to increase the hydroxylase activity, nucleic acids are introduced into organisms which code for proteins containing the amino acid sequence of the hydroxylase of the sequence SEQ ID NO: 16.
Geeignete Nukleinsäuresequenzen sind beispielsweise durch Rückübersetzung der Polypeptidsequenz gemäß dem genetischen Code erhältlich.Suitable nucleic acid sequences can be obtained, for example, by back-translating the polypeptide sequence in accordance with the genetic code.
Bevorzugt werden dafür solche Kodons verwendet, die entsprechend des Organismusspezifischen "codon usage" häufig verwendet werden. Dieser "codon usage" lässt sich anhand von Computerauswertungen anderer, bekannter Gene der betreffenden Organismen leicht ermitteln.Those codons which are frequently used in accordance with the organism-specific "codon usage" are preferably used for this. This "codon usage" can easily be determined on the basis of computer evaluations of other known genes of the organisms in question.
In einer besonders bevorzugten Ausführungsform bringt man eine Nukleinsäure, enthaltend die Sequenz SEQ. ID. NO: 15, in den Organismus ein.In a particularly preferred embodiment, a nucleic acid containing the sequence SEQ is brought. ID. NO: 15, in the organism.
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Bevorzugt verwendet man in vorstehend beschriebener bevorzugter Ausführungsform als ß-Cyclase-Gene Nukleinsäuren, die Proteine kodieren, enthaltend die Aminosäuresequenz SEQ ID NO: 18 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 30 %, vorzugsweise mindestens 50 %, bevorzugter mindestens 70 %, noch bevorzugter mindestens 90 %, am bevorzugtesten mindestens 95 % auf Aminosäureebene mit der Sequenz SEQ ID NO: 18, und die die enzymatische Eigenschaft einer ß-Cyclase aufweisen.In the preferred embodiment described above, nucleic acids which encode proteins are preferably used as the β-cyclase genes, comprising the amino acid sequence SEQ ID NO: 18 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids and having an identity of at least 30 %, preferably at least 50%, more preferably at least 70%, even more preferably at least 90%, most preferably at least 95% at the amino acid level with the sequence SEQ ID NO: 18, and which have the enzymatic property of a β-cyclase.
Weitere Beispiele für ß-Cyclasen und ß-Cyclase-Gene lassen sich beispielsweise aus verschiedenen Organismen, deren genomische Sequenz bekannt ist, wie vorstehend beschrieben durch Homologievergleiche der Aminosäuresequenzen oder der entsprechenden rückübersetzten Nukleinsäuresequenzen aus Datenbanken mit der SEQ ID NO: 18 leicht auffinden.Further examples of β-cyclases and β-cyclase genes can easily be found, for example, from various organisms whose genomic sequence is known, as described above, by comparing the homology of the amino acid sequences or the corresponding back-translated nucleic acid sequences from databases with SEQ ID NO: 18.
Weitere Beispiele für ß-Cyclasen und ß-Cyclase-Gene lassen sich weiterhin beispiels- weise ausgehend von der Sequenz SEQ ID NO: 17 aus verschiedenen Organismen, deren genomische Sequenz nicht bekannt ist, durch Hybridisierungs- und PCR- Techniken in an sich bekannter Weise leicht auffinden.Further examples of β-cyclases and β-cyclase genes can also be derived, for example, from the sequence SEQ ID NO: 17 from different organisms, whose genomic sequence is not known can easily be found by hybridization and PCR techniques in a manner known per se.
In einer weiter besonders bevorzugten Ausführungsform werden zur Erhöhung der ß- Cyclase-Aktivität Nukleinsäuren in Organismen eingebracht, die Proteine kodieren, enthaltend die Aminosäuresequenz der ß-Cyclase der Sequenz SEQ. ID. NO: 18.In a further particularly preferred embodiment, to increase the β-cyclase activity, nucleic acids are introduced into organisms which encode proteins containing the amino acid sequence of the β-cyclase of the sequence SEQ. ID. NO: 18.
Geeignete Nukleinsäuresequenzen sind beispielsweise durch Rückübersetzung der Polypeptidsequenz gemäß dem genetischen Code erhältlich.Suitable nucleic acid sequences can be obtained, for example, by back-translating the polypeptide sequence in accordance with the genetic code.
Bevorzugt werden dafür solche Kodons verwendet, die entsprechend des Organismusspezifischen "codon usage" häufig verwendet werden. Dieser "codon usage" lässt sich anhand von Computerauswertungen anderer, bekannter Gene der betreffenden Organismen leicht ermitteln.Those codons which are frequently used in accordance with the organism-specific "codon usage" are preferably used for this. This "codon usage" can easily be determined on the basis of computer evaluations of other known genes of the organisms in question.
In einer besonders bevorzugten Ausführungsform bringt man eine Nukleinsäure, enthaltend die Sequenz SEQ. ID. NO: 17 in den Organismus ein.In a particularly preferred embodiment, a nucleic acid containing the sequence SEQ is brought. ID. NO: 17 in the organism.
Alle vorstehend erwähnten Hydroxylase-Gene oder ß-Cyclase-Gene sind weiterhin in an sich bekannter Weise durch chemische Synthese aus den Nukleotidbausteinen wie beispielsweise durch Fragmentkondensation einzelner überlappender, komplementärer Nukleinsäurebausteine der Doppelhelix herstellbar. Die chemische Synthese von Oligonukleotiden kann beispielsweise, in bekannter Weise, nach der Phosphoamidit- methode (Voet, Voet, 2. Auflage, Wiley Press New York, Seite 896-897) erfolgen. Die Anlagerung synthetischer Oiigonukleotide und Auffüllen von Lücken mithilfe des Kle- now-Fragmentes der DNA-Polymerase und Ligationsreaktionen sowie allgemeine Klo- nierungsverfahren werden in Sambrook et al. (1989), Molecular cloning: A laboratory manual, Cold Spring Harbor Laboratory Press, beschrieben.All of the above-mentioned hydroxylase genes or β-cyclase genes can also be produced in a manner known per se by chemical synthesis from the nucleotide building blocks, for example by fragment condensation of individual overlapping, complementary nucleic acid building blocks of the double helix. The chemical synthesis of oligonucleotides can be carried out, for example, in a known manner using the phosphoamidite method (Voet, Voet, 2nd edition, Wiley Press New York, pages 896-897). The attachment of synthetic oligonucleotides and the filling of gaps using the Kleenow fragment of DNA polymerase and ligation reactions as well as general cloning methods are described in Sambrook et al. (1989) Molecular cloning: A laboratory manual, Cold Spring Harbor Laboratory Press.
Besonders bevorzugt werden im erfindungsgemäßen Verfahren genetisch veränderte Organismen mit folgende Kombinationen genetischer Veränderungen verwendet:Genetically modified organisms with the following combinations of genetic changes are particularly preferably used in the method according to the invention:
Genetisch veränderte Organismen, die im Vergleich zum Wildtyp eine erhöhte oder verursachte Ketolase-Aktivität und eine erhöhte Hydroxylase-Aktivität aufweisen, genetisch veränderte Organismen, die im Vergleich zum Wildtyp eine erhöhte oder verursachte Ketolase-Aktivität und eine erhöhte ß-Cyclase-Aktivität aufweisen undGenetically modified organisms that have an increased or caused ketolase activity and an increased hydroxylase activity compared to the wild type, genetically modified organisms which have an increased or caused ketolase activity and an increased ß-cyclase activity compared to the wild type and
genetisch veränderte Organismen, die im Vergleich zum Wildtyp eine erhöhte oder verursachte Ketolase-Aktivität und eine erhöhte Hydroxylase-Aktivität und eine erhöhte ß-Cyclase-Aktivität aufweisen.genetically modified organisms that have an increased or caused ketolase activity and an increased hydroxylase activity and an increased ß-cyclase activity compared to the wild type.
Die Herstellung dieser genetisch veränderten Organismen kann, wie nachstehend beschrieben, beispielsweise durch Einbringen einzelner Nukleinsäurekonstrukte (Expressionskassetten) oder durch Einbringen von Mehrfachkonstrukten erfolgen, die bis zu zwei oder drei der beschriebenen Aktivitäten enthalten.As described below, these genetically modified organisms can be produced, for example, by introducing individual nucleic acid constructs (expression cassettes) or by introducing multiple constructs which contain up to two or three of the activities described.
Unter Organismen werden erfindungsgemäß vorzugsweise Organismen verstanden, die als Wildtyp- oder Ausgangsorganismen natürlicherweise oder durch genetische Komplementierung und/oder Umregulierung der Stoffwechselwege in der Lage sind, Carotinoide, insbesondere ß-Carotin und/oder Zeaxanthin und/oder Neoxanthin und/oder Violaxanthin und/oder Lutein herzustellen.According to the invention, organisms are preferably understood to mean organisms which, as wild-type or starting organisms, naturally or by genetic complementation and / or reorganization of the metabolic pathways, are capable of producing carotenoids, in particular β-carotene and / or zeaxanthin and / or neoxanthine and / or violaxanthin and / or to produce lutein.
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Weiter bevorzugte Organismen weisen als Wildtyp- oder Ausgangsorganismen bereits eine Hydroxylase-Aktivität auf und sind somit als Wildtyp- oder Ausgangsorganismen in der Lage, Zeaxanthin herzustellen.Further preferred organisms already have hydroxylase activity as wild-type or starting organisms and are therefore capable of producing zeaxanthin as wild-type or starting organisms.
Bevorzugte Organismen sind Pflanzen oder Mikroorganismen, wie beispielsweise Bakterien, Hefen, Algen oder Pilze.Preferred organisms are plants or microorganisms, such as bacteria, yeasts, algae or fungi.
Als Bakterien können sowohl Bakterien verwendet werden, die aufgrund des Einbringens von Genen der Carotinoidbiosynthese eines Carotinoid-produzierenden Organismus in der Lage sind, Xanthophylle zu synthetisieren, wie beispielsweise Bakterien der Gattung Escherichia, die beispielsweise crt-Gene aus Erwinia enthalten, als auch Bakterien, die von sich aus in der Lage sind, Xanthophylle zu synthetisieren wie beispiels- weise Bakterien der Gattung Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc oder Cyanobakterien der Gattung Synechocystis.Both bacteria can be used as bacteria that are able to synthesize xanthophylls due to the introduction of genes of the carotenoid biosynthesis of a carotenoid-producing organism, such as bacteria of the genus Escherichia, which contain, for example, crt genes from Erwinia, as well as bacteria. which are capable of synthesizing xanthophylls, such as, for example, bacteria of the genus Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc or cyanobacteria of the genus Synechocystis.
Bevorzugte Bakterien sind Escherichia coli, Erwinia herbicola, Erwinia uredovora, Agrobacterium aurantiacum, Alcaligenes sp. PC-1, Flavobacterium sp. strain R1534, das Cyanobacterium Synechocystis sp. PCC6803, Paracoccus marcusii oder Paracoc- cus carotinifaciens.Preferred bacteria are Escherichia coli, Erwinia herbicola, Erwinia uredovora, Agrobacterium aurantiacum, Alcaligenes sp. PC-1, Flavobacterium sp. strain R1534, the Cyanobacterium Synechocystis sp. PCC6803, Paracoccus marcusii or Paracoccus carotinifaciens.
Bevorzugte Hefen sind Candida, Saccharomyces, Hansenula, Pichia oder Phaffia. Be- sonders bevorzugte Hefen sind Xanthophyllomyces dendrorhous oder Phaffia rhodozyma.Preferred yeasts are Candida, Saccharomyces, Hansenula, Pichia or Phaffia. Particularly preferred yeasts are Xanthophyllomyces dendrorhous or Phaffia rhodozyma.
Bevorzugte Pilze sind Aspergillus, Trichoderma, Ashbya, Neurospora, Blakeslea, Phy- comyces, Fusarium oder weitere in Indian Chem. Engr. Section B. Vol. 37, No. 1 , 2 (1995) auf Seite 15, Tabelle 6 beschriebene Pilze.Preferred fungi are Aspergillus, Trichoderma, Ashbya, Neurospora, Blakeslea, Phycomyces, Fusarium or others in Indian Chem. Engr. Section B. Vol. 37, No. 1, 2 (1995) on page 15, table 6 described mushrooms.
Bevorzugte Algen sind Grünalgen, wie beispielsweise Algen der Gattung Haematococcus, Phaedactylum tricornatum, Volvox oder Dunaliella. Besonders bevorzugte Algen sind Haematococcus puvialis oder Dunaliella bardawil.Preferred algae are green algae, such as algae of the genus Haematococcus, Phaedactylum tricornatum, Volvox or Dunaliella. Particularly preferred algae are Haematococcus puvialis or Dunaliella bardawil.
Weitere brauchbare Mikroorganismen und deren Herstellung zur Durchführung des erfindungsgemäßen Verfahrens sind beispielsweise aus der DE-A-199 16 140 bekannt, x worauf hiermit Bezug genommen wird.Further usable microorganisms and their production for carrying out the method according to the invention are known, for example, from DE-A-199 16 140, to which reference is hereby made.
Besonders bevorzugte Pflanzen sind Pflanzen ausgewählt aus den Familien Ranuncu-. iaceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Lina- ceae, Vitaceae, Brassicaceae, Cucurbitaceae, Primulaceae, Caryophyl Iaceae, Ama- ranthaceae, Gentianaceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Or- chidaceae, Malvaceae, liliaceae oder Lamiaceae.Plants selected from the Ranuncu families are particularly preferred plants. iaceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Lina- ceae, Vitaceae, Brassicaceae, Cucurbitaceae, Primulaceae, Caryophyl Iaceae, Amaranthaceae, Gentianaceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae , Poaceae, Orchidaceae, Malvaceae, liliaceae or Lamiaceae.
Ganz besonders bevorzugte Pflanzen sind ausgewählt aus der Gruppe der Pflanzengattungen Marigold, Tagetes errecta, Tagetes patula, Acacia, Aconitum, Adonis, Arni- ca, Aquilegia, Aster, Astragalus, Bignonia, Calendula, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia, Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Gre- villea, Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kenia, Labumum, Lathyrus, Leontodon, Lili- um, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimulus, Narcissus, Oenothera, Osmanthus, Petunia, Photinia, Physalis, Phyteuma, Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Silphium, Sinapsis, Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussi- lago, Ulex, Viola oder Zinnia, besonders bevorzugt ausgewählt aus der Gruppe der Pflanzengattungen Marigold, Tagetes erecta, Tagetes patula, Lycopersicon, Rosa, Calenduia, Physalis, Medicago, Helianthus, Chrysanthemum, Aster, Tulipa, Narcissus, Petunia, Geranium, Tropaeolum oder Adonis.Very particularly preferred plants are selected from the group of the plant genera Marigold, Tagetes errecta, Tagetes patula, Acacia, Aconitum, Adonis, Arnica, Aquilegia, Aster, Astragalus, Bignonia, Calendula, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum , Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia, Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillaea, Helenium, Helianthus, Hepatica , Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kenya, Labumum, Lathyrus, Leontodon, Lilium, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimulus, Narcissus, Oenothera, Osiaanthus , Photinia, Physalis, Phyteuma, Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Silphium, Sinapsis, Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussilago, Ulex, Viola or Zinnia, particularly preferably selected from the group of the plant genera Marigold, Tagetes erecta, Tagetes patula, Lycopersicon, Rosa, Calenduia, Physalis, Medicago, Helianthus, Chrysanthemum, Aster, Tulipa, Narcissus, Petunia, Geranium, Tropaeolum or Adonis.
Im erfindungsgemäßen Verfahren zur Herstellung von Ketocarotinoiden wird vorzugsweise dem Kultivierungsschritt der genetisch veränderten Organismen ein Ernten der Organismen und weiter bevorzugt zusätzlich ein Isolieren von Ketocarotinoiden aus den Organismen angeschlossen.In the process according to the invention for the production of ketocarotenoids, the cultivation step of the genetically modified organisms is preferably followed by harvesting the organisms and, more preferably, additionally isolating ketocarotenoids from the organisms.
Das Ernten der Organismen erfolgt in an sich bekannter Weise dem jeweiligen Organismus entsprechend. Mikroorganismen, wie Bakterien, Hefen, Algen oder Pilze oder Pflanzenzellen, die durch Fermentation in flüßigen Nährmedien kultiviert werden, können beispielsweise durch Zentrifugieren, Dekantieren oder Filtrieren abgetrennt werden. Pflanzen werden in an sich bekannter Weise auf Nährböden gezogen und ent-' sprechend geerntet.The organisms are harvested in a manner known per se in accordance with the respective organism. Microorganisms, such as bacteria, yeast, algae or fungi or plant cells, which are cultivated by fermentation in liquid nutrient media, can be separated off, for example, by centrifuging, decanting or filtering. Plants are grown in a conventional manner on nutrient media and corresponds' speaking harvested.
Die Kultivierung der genetisch veränderten Mikroorganismen erfolgt bevorzugt in Gegenwart von Sauerstoff bei einer Kultivierungstemperatur von mindestens etwa 20°C, wie z.B. 20°C bis 40 °C, und einem pH-Wert von etwa 6 bis 9. Bei genetisch veränderten Mikroorganismen erfolgt vorzugsweise zunächst die Kultivierung der Mikroorganismen in Gegenwart von Sauerstoff und in einem Komplexmedium, wie z.B. TB- oder LB- Medium bei einer Kultivierungstemperatur von etwa 20 °C oder mehr, und einem pH-Wert von etwa 6 bis 9, bis eine ausreichende Zelldichte erreicht ist. Um die Oxidati- onsreaktion besser steuern zu können, bevorzugt man die Verwendung eines induzierbaren Promotors. Die Kultivierung wird nach Induktion der Ketolaseexpression in Gegenwart von Sauerstoff, z.B. 12 Stunden bis 3 Tage, fortgesetzt.The cultivation of the genetically modified microorganisms is preferably carried out in the presence of oxygen at a cultivation temperature of at least about 20 ° C, e.g. 20 ° C to 40 ° C, and a pH of about 6 to 9. In the case of genetically modified microorganisms, the microorganisms are preferably first cultivated in the presence of oxygen and in a complex medium, such as e.g. TB or LB medium at a cultivation temperature of about 20 ° C or more, and a pH of about 6 to 9 until a sufficient cell density is reached. In order to better control the oxidation reaction, the use of an inducible promoter is preferred. The cultivation is carried out after induction of ketolase expression in the presence of oxygen, e.g. 12 hours to 3 days continued.
Die Isolierung der Ketocarotinoide aus der geernteten Biomasse erfolgt in an sich bekannter Weise, beispielsweise durch Extraktion und gegebenenfalls weiterer chemische oder physikalischer Reinigungsprozesse, wie beispielsweise Fällungsmethoden, Kristallographie, thermische Trennverfahren, wie Rektifizierverfahren oder physikali- sehe Trennverfahren, wie beispielsweise Chromatographie. Wie nachstehend erwähnt, können die ketocarotinoide in den erfindungsgemäßen, genetisch veränderten Pflanzen vorzugsweise in verschiedenen Pflanzengeweben, wie beispielsweise Samen, Blätter, Früchte, Blüten, insbesondere in Blütenblättern spezifisch hergestellt werden.The ketocarotenoids are isolated from the harvested biomass in a manner known per se, for example by extraction and, if appropriate, further chemical or physical purification processes, such as, for example, precipitation methods, crystallography, thermal separation processes, such as rectification processes or physical separation processes, such as, for example, chromatography. As mentioned below, the ketocarotenoids in the genetically modified plants according to the invention can preferably be produced specifically in various plant tissues, such as, for example, seeds, leaves, fruits, flowers, in particular in petals.
Die Isolierung von Ketocarotinoiden aus den geernteten Blütenblättern erfolgt in an sich bekannter Weise, beispielsweise durch Trocknung und anschließender Extraktion und gegebenenfalls weiterer chemischer oder physikalischer Reinigungsprozesse, wie beispielsweise Fällungsmethoden, Kristallographie, thermische Trennverfahren, wie Rektifizierverfahren oder physikalische Trennverfahren, wie beispielsweise Chromatographie. Die Isolierung von Ketocarotinoiden aus den Blütenblättern erfolgt beispielsweise bevorzugt durch organische Lösungsmittel wie Aceton, Hexan, Ether oder tert.-Methylbutylether.Ketocarotenoids are isolated from the harvested petals in a manner known per se, for example by drying and subsequent extraction and, if appropriate, further chemical or physical purification processes, such as, for example, precipitation methods, crystallography, thermal separation processes, such as rectification processes or physical separation processes, such as chromatography. Ketocarotenoids are isolated from the petals, for example, preferably using organic solvents such as acetone, hexane, ether or tert-methylbutyl ether.
Weitere Isolierverfahren von Ketocarotinoiden, insbesondere aus Blütenblättern, sind beispielsweise in Egger und Kleinig (Phytochemistry (1967) 6, 437-440) und Egger (Phytochemistry (1965) 4, 609-618) beschrieben.Further isolation processes for ketocarotenoids, in particular from petals, are described, for example, in Egger and Kleinig (Phytochemistry (1967) 6, 437-440) and Egger (Phytochemistry (1965) 4, 609-618).
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Vorzugsweise sind die Ketocarotinoide ausgewählt aus der .Gruppe Astaxanthin, Canthaxanthin, Echinenon, 3-Hydroxyechinenon, 3'-Hydroxyechinenon, Adonirubin und Adonixanthin.The ketocarotenoids are preferably selected from the group consisting of astaxanthin, canthaxanthin, echinenone, 3-hydroxyechinenone, 3'-hydroxyechinenone, adonirubin and adonixanthin.
Ein besonders bevorzugtes Ketocarotinoid ist Astaxanthin.A particularly preferred ketocarotenoid is astaxanthin.
Je nach verwendetem Organismus fallen die Ketocarotinoide in freier Form oder als Fettsäureester an.Depending on the organism used, the ketocarotenoids are obtained in free form or as fatty acid esters.
In Blütenblättern von Pflanzen fallen die Ketocarotinlide im erfindungsgemäßen Verfahren in Form ihrer Mono- oder Diester mit Fettsäuren an. Einige nachgewiesene Fett- säuren sind z.B. Myristinsäure, Palmitinsäure, Stearinsäure, Ölsäure, Linolensäure, und Laurinsäure (Kamata und Simpson (1987) Comp. Biochem. Physiol. Vol. 86B(3), 587-591).In the petals of plants, the ketocarotenoids are obtained in the process according to the invention in the form of their mono- or diesters with fatty acids. Some proven fatty acids are e.g. Myristic acid, palmitic acid, stearic acid, oleic acid, linolenic acid, and lauric acid (Kamata and Simpson (1987) Comp. Biochem. Physiol. Vol. 86B (3), 587-591).
Die Herstellung der Ketocarotinoide kann in der ganzen Pflanze oder in einer bevor- zugten Ausführungsform spezifisch in Pflanzengeweben, die Chromoplasten enthalten, erfolgen. Bevorzugte Pflanzengewebe sind beispielsweise Wurzeln, Samen, Blätter, Früchte, Blüten und insbesondere Nektarien und Blütenblätter, die auch Petalen bezeichnet werden.The ketocarotenoids can be produced in the whole plant or, in a preferred embodiment, specifically in plant tissues which contain chromoplasts. Preferred plant tissues are, for example, roots, seeds, leaves, Fruits, flowers and especially nectaries and petals, which are also called petals.
In einer besonderes bevorzugten Ausführungsform der erfindungsgemäßen Verfahrens verwendet man genetisch veränderte Pflanzen, die in Blüten die höchste Expressionsrate einer Ketolase aufweisen.In a particularly preferred embodiment of the method according to the invention, genetically modified plants are used which have the highest expression rate of a ketolase in flowers.
Vorzugsweise wird dies dadurch erreicht, dass die Genexpression der Ketolase unter Kontrolle eines blütenspezifischen Promotors erfolgt. Beispielsweise werden dazu die vorstehend beschriebenen Nukleinsäuren, wie nachstehend ausführlich beschrieben, in einem Nukleinsäurekonstrukt funktionell verknüpft mit einem blütenspezifischen Promotor in die Pflanze eingebracht.This is preferably achieved in that the gene expression of the ketolase takes place under the control of a flower-specific promoter. For example, the nucleic acids described above, as described in detail below, are introduced into the plant in a nucleic acid construct functionally linked with a flower-specific promoter.
In einer weiteren, besonderes bevorzugten Ausführungsform der erfindungsgemäßen Verfahrens verwendet man genetisch veränderte Pflanzen, die in Früchten die höchste Expressionsrate einer Ketolase aufweisen.In a further, particularly preferred embodiment of the method according to the invention, genetically modified plants are used which have the highest expression rate of a ketolase in fruits.
Vorzugsweise wird dies dadurch erreicht, dass die Genexpression der Ketolase unter Kontrolle eines fruchtspezifischen Promotors erfolgt. Beispielsweise werden dazu die vorstehend beschriebenen Nukleinsäuren, wie nachstehend ausführlich beschrieben, in einem Nukleinsäurekonstrukt funktionell verknüpft mit einem fruchtspezifischen Promotor in die Pflanze eingebracht.This is preferably achieved in that the gene expression of the ketolase takes place under the control of a fruit-specific promoter. For example, the nucleic acids described above, as described in detail below, are introduced into the plant in a nucleic acid construct functionally linked with a fruit-specific promoter.
In einer weiteren, besonderes bevorzugten, Ausführungsform der erfindungsgemäßen Verfahrens verwendet man genetisch veränderte Pflanzen, die in Samen die höchste Expressionsrate einer Ketolase aufweisen.In a further, particularly preferred, embodiment of the method according to the invention, genetically modified plants are used which have the highest expression rate of a ketolase in seeds.
Vorzugsweise wird dies dadurch erreicht, dass die Genexpression der Ketolase unter Kontrolle eines samenspezifischen Promotors erfolgt. Beispielsweise werden dazu die vorstehend beschriebenen Nukleinsäuren, wie nachstehend ausführlich beschrieben, in einem Nukleinsäurekonstrukt funktionell verknüpft mit einem samenspezifischen Promotor in die Pflanze eingebracht.This is preferably achieved in that the gene expression of the ketolase takes place under the control of a seed-specific promoter. For example, the nucleic acids described above, as described in detail below, are introduced into the plant in a nucleic acid construct functionally linked with a seed-specific promoter.
Das Targeting in die Chromplasten erfolgt durch ein funktionell verknüpftes plastidäres Transitpeptid. Im folgenden wird exemplarisch die Herstellung genetisch veränderter Pflanzen mit erhöhter oder verursachter Ketolase-Aktivität beschrieben. Die Erhöhung weiterer Aktivitäten, wie beispielsweise der Hydroxylase-Aktivität und/oder der ß-Cyclase-Aktivität kann analog unter Verwendung von Nukleinsäuresequenzen, kodierend eine Hydroxy- läse bzw. ß-Cyclase anstelle von Nukleinsäuresequenzen, kodierend eine Ketolase, erfolgen. Die Transformation kann bei den Kombinationen von genetischen Veränderungen einzeln oder durch Mehrfachkonstrukte erfolgen.The targeting in the chrome peaks is carried out by a functionally linked plastid transit peptide. In the following, the production of genetically modified plants with increased or caused ketolase activity is described as an example. Other activities, such as the hydroxylase activity and / or the β-cyclase activity, can be increased analogously using nucleic acid sequences encoding a hydroxylase or β-cyclase instead of nucleic acid sequences encoding a ketolase. In the combination of genetic changes, the transformation can take place individually or through multiple constructs.
Die Herstellung der transgenen Pflanzen erfolgt vorzugsweise durch Transformation der Ausgangspflanzen, mit einem Nukleinsäurekonstrukt, das die vorstehend beschriebenen Nukleinsäuren, kodierend eine Ketolase enthält, die mit einem oder mehreren Regulationssignalen funktionell verknüpft sind, die die Transkription und Translation in Pflanzen gewährleisten.The transgenic plants are preferably produced by transforming the starting plants, using a nucleic acid construct which contains the nucleic acids described above, encoding a ketolase, which are functionally linked to one or more regulation signals which ensure transcription and translation in plants.
Diese Nukleinsäurekonstrukte, in denen die kodierende Nukleinsauresequenz mit einem oder mehreren Regulationssignalen funktionell verknüpft sind, die die Transkription und Translation in Pflanzen gewährleisten, werden im folgenden auch Expressionskassetten genannt.These nucleic acid constructs, in which the coding nucleic acid sequence is functionally linked to one or more regulatory signals which ensure transcription and translation in plants, are also called expression cassettes below.
Vorzugsweise enthalten die Regulationssignale einen oder mehrere Promotoren, die die Transkription und Translation in Pflanzen gewährleisten.The regulation signals preferably contain one or more promoters which ensure transcription and translation in plants.
Die Expressionskassetten beinhalten Regulationssignale, also regulative Nukleinsäuresequenzen, welche die Expression der kodierenden Sequenz in der Wirtszelle steu- em. Gemäß einer bevorzugten Ausführungsform umfasst eine Expressionskassette stromaufwärts, d.h. am 5'-Ende der kodierenden Sequenz, einen Promotor und stromabwärts, d.h. am 3'-Ende, ein Polyadenylierungssignal und gegebenenfalls weitere regulatorische Elemente, welche mit der dazwischenliegenden kodierenden Sequenz für mindestens eines der vorstehend beschriebenen Gene operativ verknüpft sind. Un- ter einer operativen Verknüpfung versteht man die sequenzielle Anordnung von Promotor, kodierender Sequenz, Terminator und ggf. weiterer regulativer Elemente derart, das jedes der regulativen Elemente seine Funktion bei der Expression der kodierenden Sequenz bestimmungsgemäß erfüllen kann. Im folgenden werden beispielhaft die bevorzugten Nukleinsäurekonstrukte, Expressionskassetten und Vektoren für Pflanzen und Verfahren zur Herstellung von transgenen Pflanzen, sowie die transgenen Pflanzen selbst beschrieben.The expression cassettes contain regulation signals, that is to say regulative nucleic acid sequences, which control the expression of the coding sequence in the host cell. According to a preferred embodiment, an expression cassette upstream, ie at the 5 'end of the coding sequence, a promoter and downstream, ie at the 3' end, a polyadenylation signal and, if appropriate, further regulatory elements which match the coding sequence for at least one of the above genes described are operatively linked. An operative link is understood to mean the sequential arrangement of promoter, coding sequence, terminator and, if appropriate, further regulatory elements in such a way that each of the regulatory elements can fulfill its function as intended when expressing the coding sequence. The preferred nucleic acid constructs, expression cassettes and vectors for plants and methods for producing transgenic plants and the transgenic plants themselves are described below by way of example.
Die zur operativen Verknüpfung bevorzugten, aber nicht darauf beschränkten Sequenzen, sind Targeting-Sequenzen zur Gewährleistung der subzellulären Lokalisation im Apoplasten, in der Vakuole, in Piastiden, im Mitochondrium, im Endoplasmatischen Retikulum (ER), im Zellkern, in Ölkörperchen oder anderen Kompartimenten und Translationsverstärkern wie die 5'-Führungssequenz aus dem Tabak-Mosaik- Virus (Gallie et al., Nucl. Acids Res. 15 (1987), 8693 -8711 ).The sequences which are preferred, but not limited to, for operative linking, are targeting sequences to ensure subcellular localization in the apoplast, in the vacuole, in plastids, in the mitochondrion, in the endoplasmic reticulum (ER), in the cell nucleus, in oil bodies or other compartments and Translation enhancers such as the 5 'leader sequence from the tobacco mosaic virus (Gallie et al., Nucl. Acids Res. 15 (1987), 8693-8711).
Als Promotor der Expressionskassette ist grundsätzlich jeder Promotor geeignet, der die Expression von Fremdgenen in Pflanzen steuern kann.In principle, any promoter which can control the expression of foreign genes in plants is suitable as the promoter of the expression cassette.
"Konstitutiver" Promotor meint solche Promotoren, die eine Expression in zahlreichen, bevorzugt allen, Geweben über einen größeren Zeitraum der Pflanzenentwicklung, bevorzugt zu allen Zeitpunkten der Pflanzenentwicklung, gewährleisten.“Constitutive” promoter means those promoters which ensure expression in numerous, preferably all, tissues over a relatively long period of plant development, preferably at all times during plant development.
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Vorzugsweise verwendet man insbesondere einen pflanzlichen Promotor oder einen Promotor, der einem Pflanzenvirus entstammt. Insbesondere bevorzugt ist der Promotor des 35S-Transkript.es des CaMV Blumenkohlmosaikvirus (Franck et al. (1980) Cell 21 :285-294; Odell et al. (1985) Nature 313:810-812; Shewmaker et al. (1985) Virology 140:281-288; Gardner et al. (1986) Plant Mol Biol 6:221-228), der 19S CaMV Promotor (US 5,352,605; WO 84/02913; Benfey et al. (1989) EMBO J 8:2195-2202), den Triose- Phosphat Translokator (TPT) Promotor aus Arabidopsis thallana Acc.-No. AB006698 , Basenpaar 53242 bis 55281 ; das Gen beginnend ab bp 55282 ist mit "phos- phate/triose-phosphate translocator" annotiert, oder den 34S Promoter aus Figwort mosaic virus Acc.-No. X16673, Basenpaar 1 bis 554.In particular, a plant promoter or a plant virus-derived promoter is preferably used. Particularly preferred is the promoter of the 35S transcript of the CaMV cauliflower mosaic virus (Franck et al. (1980) Cell 21: 285-294; Odell et al. (1985) Nature 313: 810-812; Shewmaker et al. (1985) Virology 140: 281-288; Gardner et al. (1986) Plant Mol Biol 6: 221-228), the 19S CaMV promoter (US 5,352,605; WO 84/02913; Benfey et al. (1989) EMBO J 8: 2195- 2202), the triose phosphate translocator (TPT) promoter from Arabidopsis thallana Acc.-No. AB006698, base pair 53242 to 55281; the gene starting from bp 55282 is annotated with "phosphate / triose-phosphate translocator", or the 34S promoter from Figwort mosaic virus Acc.-No. X16673, base pair 1 to 554.
Ein weiterer geeigneter konstitutiver Promotor ist der pds Promoter (Pecker et al. (1992) Proc. Natl. Acad. Sei USA 89: 4962-4966) oder der "Rubisco small subunit (SSU)"-Promotor (US 4,962,028), der LeguminB-Promotor (GenBank Acc.-Nr. X03677), der Promotor der Nopalinsynthase aus Agrobacterium, der TR- Doppelpromotor, der OCS (Octopin Synthase) Promotor aus Agrobacterium, der Ubi- quitin Promotor (Holtorf S et al. (1995) Plant Mol Biol 29:637-649), der Ubiquitin 1 Promotor (Christensen et al. (1992) Plant Mol Biol 18:675-689; Bruce et al. (1989) Proc Natl Acad Sei USA 86:9692-9696), der'Smas Promotor, der Cinnamylalkoholdehydro- genase-Promotor (US 5,683,439), die Promotoren der vakuolärer ATPase Untereinheiten oder der Promotor eines prolinreichen Proteins aus Weizen (WO 91/13991), der Pnit-Promoter (Y07648.L, Hillebrand et al. (1998), Plant. Mol. Biol. 36, 89-99, Hille- brand et al. (1996), Gene, 170, 197-200) sowie weitere Promotoren von Genen, deren konstitutive Expression in Pflanzen dem Fachmann bekannt ist.Another suitable constitutive promoter is the pds promoter (Pecker et al. (1992) Proc. Natl. Acad. Be USA 89: 4962-4966) or the "Rubisco small subunit (SSU)" promoter (US 4,962,028), the LeguminB Promoter (GenBank Acc. No. X03677), the promoter of nopaline synthase from Agrobacterium, the TR double promoter, the OCS (octopine synthase) promoter from Agrobacterium, the ubiquitin promoter (Holtorf S et al. (1995) Plant Mol Biol 29: 637-649), the ubiquitin 1 promoter (Christensen et al. (1992) Plant Mol Biol 18: 675-689; Bruce et al. (1989) Proc Natl Acad Sei USA 86: 9692-9696), the ' Smas promoter, the cinnamyl alcohol dehydrogenase promoter (US 5,683,439), the promoters of the vacuolar ATPase subunits or the promoter of a proline-rich protein from wheat (WO 91/13991), the Pnit Promoter (Y07648.L, Hillebrand et al. (1998), Plant. Mol. Biol. 36, 89-99, Hillebrand et al. (1996), Gene, 170, 197-200) and further promoters of genes whose constitutive expression in plants is known to the person skilled in the art.
Die Expressionskassetten können auch einen chemisch induzierbaren Promotor enthalten (Übersichtsartikel: Gatz et al. (1997) Annu Rev Plant Physiol Plant Mol Biol 48:89-108), durch den die Expression des Ketolase-Gens in der Pflanze zu einem bestimmten Zeitpunkt gesteuert werden kann. Derartige Promotoren, wie z.B. der PRP1 Promotor (Ward et al. (1993) Plant Mol Biol 22:361-366), ein durch Salicylsäure induzierbarer Promotor (WO 95/19443), ein durch Benzolsulfonamid-induzierbarer Promotor (EP 0388 186), ein durch Tetrazyklin-induzierbarer Promotor (Gatz et al. (1992) Plant J 2:397-404), ein durch Abscisinsäure induzierbarer Promotor (EP 0335 528) bzw. ein durch Ethanol- oder Cyclohexanon-induzierbarer Promotor (WO 93/21334) können ebenfalls verwendet werden. XThe expression cassettes can also contain a chemically inducible promoter (review article: Gatz et al. (1997) Annu Rev Plant Physiol Plant Mol Biol 48: 89-108), by means of which the expression of the ketolase gene in the plant is controlled at a specific point in time can. Such promoters, e.g. the PRP1 promoter (Ward et al. (1993) Plant Mol Biol 22: 361-366), a salicylic acid-inducible promoter (WO 95/19443), a benzenesulfonamide-inducible promoter (EP 0388 186), a tetracycline-inducible promoter Promoter (Gatz et al. (1992) Plant J 2: 397-404), a promoter inducible by abscisic acid (EP 0335 528) or a promoter inducible by ethanol or cyclohexanone (WO 93/21334) can also be used. X
Ferner sind Promotoren bevorzugt, die durch biotischen oder abiotischen Stress indu- ziert werden wie beispielsweise der pathogen-induzierbare Promotor des PRP1 -Gens (Ward et al. (1993) Plant Mol Biol 22:361-366), der hitzeinduzierbare hsp70- oder hsp80-Promoter aus Tomate (US 5,187,267), der kälteinduzierbare alpha-Amylase Promoter aus der Kartoffel (WO 96/12814), der licht-induzierbare PPDK Promotor oder der verwundungsinduzierte pinll-Promoter (EP375091).Also preferred are promoters that are induced by biotic or abiotic stress, such as the pathogen-inducible promoter of the PRP1 gene (Ward et al. (1993) Plant Mol Biol 22: 361-366), the heat-inducible hsp70 or hsp80 Promoter from tomato (US 5,187,267), the cold-inducible alpha-amylase promoter from the potato (WO 96/12814), the light-inducible PPDK promoter or the wound-induced pinII promoter (EP375091).
Pathogen-induzierbare Promotoren umfassen die von Genen, die infolge eines Patho- genbefalls induziert werden wie beispielsweise Gene von PR-Proteinen, SAR- Proteinen, b-1 ,3-Glucanase, Chitinase usw. (beispielsweise Redolfi et al. (1983) Neth J Plant Pathol 89:245-254; Uknes, et al. (1992) The Plant Cell4:645-656; Van Loon (1985) Plant Mol Viral 4:111-116; Marineau et al. (1987) Plant Mol Biol 9:335-342; Mat- ton et al. (1987) Molecular Plant-Microbe Interactions 2:325-342; Somssich et al. (1986) Proc Natl Acad Sei USA 83:2427-2430; Somssich et al. (1988) Mol Gen Genet- ics 2:93-98; Chen et al. (1996) Plant J 10:955-966; Zhang and Sing (1994) Proc Natl Acad Sei USA 91 :2507-2511 ; Warner, et al. (1993) Plant J 3:191 -201 ; Siebertz et al. (1989) Plant Cell 1 :961 -968(1989). Umfasst sind auch verwundungsinduzierbare Promotoren wie der des pinll-Gens (Ryan (1990) Ann Rev Phytopath 28:425-449; Duan et al. (1996) Nat Biotech 14:494-498), des wunl und wun2-Gens (US 5,428,148), des winl- und win2-Gens (Stanford et al. (1989) Mol Gen Genet 215:200-208), des Systemin-Gens (McGurl et al. (1992) Science 225:1570-1573), des WIP1-Gens (Rohmeier et al. (1993) Plant Mol BiolPathogen-inducible promoters include those of genes that are induced as a result of a pathogen attack, such as, for example, genes from PR proteins, SAR proteins, b-1, 3-glucanase, chitinase etc. (for example Redolfi et al. (1983) Neth J Plant Pathol 89: 245-254; Uknes, et al. (1992) The Plant Cell 4: 645-656; Van Loon (1985) Plant Mol Viral 4: 111-116; Marineau et al. (1987) Plant Mol Biol 9 : 335-342; Matton et al. (1987) Molecular Plant-Microbe Interactions 2: 325-342; Somssich et al. (1986) Proc Natl Acad Sei USA 83: 2427-2430; Somssich et al. (1988) Mol Gen Genetics 2: 93-98; Chen et al. (1996) Plant J 10: 955-966; Zhang and Sing (1994) Proc Natl Acad Sei USA 91: 2507-2511; Warner, et al. (1993 Plant J 3: 191-201; Siebertz et al. (1989) Plant Cell 1: 961-968 (1989). Also included are wound inducible promoters such as that of the pinll gene (Ryan (1990) Ann Rev Phytopath 28: 425-449; Duan et al. (1996) Nat Biotech 14: 494-498), the wunl and wun2 gene (US 5,428,148 ), the winl and win2 genes (Stanford et al. (1989) Mol Gen Genet 215: 200-208), the systemin gene (McGurl et al. (1992) Science 225: 1570-1573), the WIP1 Gens (Rohmeier et al. (1993) Plant Mol Biol
22:783-792; Ekelkamp et al. (1993) FEBS Letters 323:73-76), des MPI-Gens (Corderok et al. (1994) The Plant J 6(2):141 -150) und dergleichen.22: 783-792; Ekelkamp et al. (1993) FEBS Letters 323: 73-76), the MPI gene (Corderok et al. (1994) The Plant J 6 (2): 141-150) and the like.
Weitere geeignete Promotoren sind beispielsweise fruchtreifung-spezifische Promoto- ren, wie beispielsweise der fruchtreifung-spezifische Promotor aus Tomate (WOFurther suitable promoters are, for example, fruit ripening-specific promoters, such as the fruit ripening-specific promoter from tomato (WO
94/21794, EP 409 625). Entwicklungsabhängige Promotoren schließt zum Teil die gewebespezifischen Promotoren ein, da die Ausbildung einzelner Gewebe naturgemäß entwicklungsabhängig erfolgt.94/21794, EP 409 625). Development-dependent promoters partly include the tissue-specific promoters, since the formation of individual tissues is naturally development-dependent.
Weiterhin sind insbesondere solche Promotoren bevorzugt, die die Expression in Geweben oder Pflanzenteilen sicherstellen, in denen beispielsweise die Biosynthese von Ketocarotinoiden bzw. dessen Vorstufen stattfindet. Bevorzugt sind beispielsweise . Promotoren mit Spezifitäten für die Antheren, Ovarien, Petalen, Sepalen, Blüten, Blätter, Stengel, Samen und Wurzeln und Kombinationen hieraus.Furthermore, promoters are particularly preferred which ensure expression in tissues or parts of plants in which, for example, the biosynthesis of ketocarotenoids or their precursors takes place. For example, are preferred. Promoters with specificities for the anthers, ovaries, petals, sepals, flowers, leaves, stems, seeds and roots and combinations thereof.
Knollen-, Speicherwurzel- oder Wurzel-spezifische Promotoren sind beispielsweise der Patatin-Promotor Klasse I (B33) oder der Promotor des Cathepsin D Inhibitors aus Kartoffel.Tuber, storage root or root-specific promoters are, for example, the patatin class I (B33) promoter or the potato cathepsin D inhibitor promoter.
Blattspezifische Promotoren sind beispielsweise der Promotor der cytosolischenLeaf-specific promoters are, for example, the cytosolic promoter
FBPase aus Kartoffel (WO 97/05900), der SSU Promotor (small subunit) der Rubisco (Ribulose-1 ,5-bisphosphatcarboxylase) oder der ST-LSI Promotor aus Kartoffel (Stockhaus et al. (1989) EMBO J 8:2445-2451).FBPase from potato (WO 97/05900), the SSU promoter (small subunit) of Rubisco (ribulose-1, 5-bisphosphate carboxylase) or the ST-LSI promoter from potato (Stockhaus et al. (1989) EMBO J 8: 2445- 2451).
Blütenspezifische Promotoren sind beispielsweise der Phytoen-Synthase Promotor (WO 92/16635) oder der Promotor des P-rr Gens (WO 98/22593), der AP3 Promoter aus Arabidopsis thaliana (siehe Beispiel 5), der CHRC-Promoter (Chromoplast-specific carotenoid-associated protein (CHRC) gene promoter aus Cucumis sativus Acc.-No. AF099501 , Basenpaar 1 bis 1532), der EPSP_Synthase Promotor (5-enol- pyruvylshikimate-3-phosphate synthase gene promoter aus Petunia hybrida, Acc.-No. M37029, Basenpaar 1 bis 1788), der PDS Promotor (Phytoene desaturase gene pro- moter aus Solanum lycopersicum, Acc.-No. U46919, Basenpaar 1 bis 2078), der DFR- A Promotor (Dihydroflavonol 4-reductase gene A promoter aus Petunia hybrida, Acc.- No. X79723, Basenpaar 32 bis 1902) oder der FBP1 Promotor (Floral Binding Protein 1 gene promoter aus Petunia hybrida, Acc.-No. L10115, Basenpaar 52 bis 1069).Flower-specific promoters are, for example, the phytoene synthase promoter (WO 92/16635) or the promoter of the P-rr gene (WO 98/22593), the AP3 promoter from Arabidopsis thaliana (see Example 5), the CHRC promoter (chromoplast-specific carotenoid-associated protein (CHRC) gene promoter from Cucumis sativus Acc.-No. AF099501, base pair 1 to 1532), the EPSP_Synthase promoter (5-enol-pyruvylshikimate-3-phosphate synthase gene promoter from Petunia hybrida, Acc.-No. M37029, base pair 1 to 1788), the PDS promoter (Phytoene desaturase gene pro- moter from Solanum lycopersicum, Acc.-No. U46919, base pair 1 to 2078), the DFR-A promoter (dihydroflavonol 4-reductase gene A promoter from Petunia hybrida, Acc.- No. X79723, base pair 32 to 1902) or the FBP1 promoter (Floral Binding Protein 1 gene promoter from Petunia hybrida, Acc.-No. L10115, base pair 52 to 1069).
Antheren-spezifische Promotoren sind beispielsweise der 5126-Promotor (US 5,689,049, US 5,689,051), der glob-l Promotor oder der g-Zein Promotor.Anther-specific promoters are, for example, the 5126 promoter (US 5,689,049, US 5,689,051), the glob-1 promoter or the g-zein promoter.
Samen-spezifische Promotoren sind beispielsweise der ACP05-Promotor (Acyl-carrier- Protein Gen, WO9218634), die Promotoren AtS1 und AtS3 von ArabidopsisSeed-specific promoters are, for example, the ACP05 promoter (acyl carrier protein gene, WO9218634), the promoters AtS1 and AtS3 from Arabidopsis
(WO 9920775), der LeB4-Promotor von Vicia faba (WO 9729200 und US 06403371), der Napin-Promotor von Brassica napus (US 5608152; EP 255378; US 5420034),der SBP-Promotor von Vicia faba (DE 9903432) oder die Maispromotoren End1 und End2 (WO 0011177).(WO 9920775), the LeB4 promoter from Vicia faba (WO 9729200 and US 06403371), the napin promoter from Brassica napus (US 5608152; EP 255378; US 5420034), the SBP promoter from Vicia faba (DE 9903432) or the corn promoters End1 and End2 (WO 0011177).
Weitere zur Expression in Pflanzen geeignete Promotoren sind beschrieben in Rogers et al. (1987) Meth in Enzymol 153:253-277; Schardl et al. (1987) Gene 61 :1-11 und Berger et al. (1989) Proc Natl Acad Sei USA 86:8402-8406).Further promoters suitable for expression in plants are described in Rogers et al. (1987) Meth in Enzymol 153: 253-277; Schardl et al. (1987) Gene 61: 1-11 and Berger et al. (1989) Proc Natl Acad Sei USA 86: 8402-8406).
Besonders bevorzugt im erfindungsgemäßen Verfahren sind konstitutive, samenspezifische, fruchtspezifische, blütenspezifische und insbesondere blütenblattspezifische Promotoren.In the method according to the invention, particular preference is given to constitutive, seed-specific, fruit-specific, flower-specific and in particular flower-leaf-specific promoters.
Die vorliegende Erfindung betrifft daher insbesondere ein Nukleinsäurekonstrukt, ent- haltend funktionell verknüpft einen blütenspezifischen oder insbesondere einen blüten- blattspezifischen Promotor und eine Nukleinsäure, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.The present invention therefore relates in particular to a nucleic acid construct containing functionally linked a flower-specific or in particular a petal-specific promoter and a nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
Die Herstellung einer Expressionskassette erfolgt vorzugsweise durch Fusion eines geeigneten Promotors mit einer vorstehend beschriebenen Nukleinsäure, kodierend eine Ketolase, und vorzugsweise einer zwischen Promotor und Nukleinsäure-Sequenz inserierten Nukleinsäure, die für ein plastidenspezifisches Transitpeptid kodiert, sowie einem Polyadenylierungssignal nach gängigen Rekombinations- und Klonierungstech- niken, wie sie beispielsweise in T. Maniatis, E.F. Fritsch und J. Sambrook, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989) sowie in T.J. Silhavy, M.L. Berman und L.W. Enquist, Experiments with Gene Fusions, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1984) und in Ausu- bel, F.M. et al., Current Protocols in Molecular Biology, Greene Publishing Assoc. and Wiley-Interscience (1987), beschrieben sind.An expression cassette is preferably produced by fusing a suitable promoter with a nucleic acid described above, encoding a ketolase, and preferably a nucleic acid inserted between promoter and nucleic acid sequence, which codes for a plastid-specific transit peptide, and a polyadenylation signal according to common recombination and cloning technology. techniques such as those described in T. Maniatis, EF Fritsch and J. Sambrook, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989) as well as in TJ Silhavy, ML Berman and LW Enquist, Experiments with Gene Fusions, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1984) and in Ausuble, FM et al., Current Protocols in Molecular Biology, Greene Publishing Assoc. and Wiley-Interscience (1987).
Die vorzugsweise insertierte Nukleinsäuren, kodierend ein plastidäres Transitpeptid, gewährleisten die Lokalisation in Piastiden und insbesondere in Chromoplasten.The preferably inserted nucleic acids encoding a plastid transit peptide ensure localization in plastids and in particular in chromoplasts.
Es können auch Expressionskassetten verwendet werden, deren Nukleinsauresequenz für ein Ketolase-Fusionsprotein kodiert, wobei ein Teil des Fusionsproteins ein Transitpeptid ist, das die Translokation des Polypeptides steuert. Bevorzugt sind für die Chromoplasten spezifische Transitpeptide, welche nach Translokation der Ketolase in die Chromoplasten vom Ketolase-Teil enzymatisch abgespalten werden.Expression cassettes can also be used, the nucleic acid sequence of which codes for a ketolase fusion protein, part of the fusion protein being a transit peptide which controls the translocation of the polypeptide. Preferred transit peptides are preferred for the chromoplasts, which are cleaved enzymatically from the ketolase part after translocation of the ketolase into the chromoplasts.
Insbesondere bevorzugt ist das Transitpeptid, das von der plastidären Nicotiana taba- cum Transketolase oder einem anderen Transitpeptid (z.B. dem Transitpeptid der kleinen Untereinheit der Rubisco (rbcS) oder der Ferredoxin NADP Oxidoreduktase als auch der Isopentenylpyrophosphat lsomerase-2) oder dessen funktionellem Äquivalent abgeleitet ist.The transit peptide which is derived from the plastid Nicotiana tabacum transketolase or another transit peptide (for example the transit peptide of the small subunit of the Rubisco (rbcS) or the ferredoxin NADP oxidoreductase as well as the isopentenyl pyrophosphate isomerase-2) or its functional equivalent is particularly preferred ,
Besonders bevorzugt sind Nukleinsäure-Sequenzen von drei Kassetten des Plastiden- Transitpeptids der plastidären Transketolase aus Tabak in drei Leserastern als Kpnl/BamHI Fragmente mit einem ATG-Codon in der Ncol Schnittstelle:Nucleic acid sequences of three cassettes of the plastid transit peptide of plastid transketolase from tobacco in three reading frames are particularly preferred as Kpnl / BamHI fragments with an ATG codon in the Ncol interface:
pTP09pTP09
Kpnl_GGTACCATGGCGTCTTCTTCTTCTCTCACTCTCTCTCAAGCTATCCTCTCTC GTTCTGTCCCTCGCCATGGCTCTGCCTCTTCTTCTCAACTTTCCCCTTCTTCTCT- CACTTTTTCCGGCCTTAAATCCAATCCCAATATCACCACCTCCCGCCGCCG- TACTCCTTCCTCCGCCGCCGCCGCCGCCGTCGTAAGGTCACCGGC- GATTCGTGCCTCAGCTGCAACCGAAACCATAGAGAAAACTGAGACTGCGG- GATCC_BamHIKpnl_GGTACCATGGCGTCTTCTTCTTCTCTCACTCTCTCTCAAGCTATCCTCTCTC GTTCTGTCCCTCGCCATGGCTCTGCCTCTTCTTCTCAACTTTCCCCTTCTTCTCT- CACTTTTTCCGGCCTTAAATCCAATCCCAATATCACCACCTCCCGCCGCCG- TACTCCTTCCTCCGCCGCCGCCGCCGCCGTCGTAAGGTCACCGGC- GATTCGTGCCTCAGCTGCAACCGAAACCATAGAGAAAACTGAGACTGCGG- GATCC_BamHI
pTP10 KpnLGGTACCATGGCGTCTTCTTCTtCTCTCACTCTCTCTCAAGCTATCCTCTCTC GTTCTGTCCCTCGCCATGGCTCTGCCTCTTCTTCTCAACTTTCCCCTTCTTCTCT- CACTTTTTCCGGCCTTAAATCCAATCCCAATATCACCACCTCCCGCCGCCG- TACTCCTTCCTCCGCCGCCGCCGCCGCCGTCGTAAGGTCACCGGC- GATTCGTGCCTCAGCTGCAACCGAAACCATAGAGAAAACTGAGACTGCGCTG- GATCC_BamHIPTP10 KpnLGGTACCATGGCGTCTTCTTCTtCTCTCACTCTCTCTCAAGCTATCCTCTCTC GTTCTGTCCCTCGCCATGGCTCTGCCTCTTCTTCTCAACTTTCCCCTTCTTCTCT- CACTTTTTCCGGCCTTAAATCCAATCCCAATATCACCACCTCCCGCCGCCG- TACTCCTTCCTCCGCCGCCGCCGCCGCCGTCGTAAGGTCACCGGC- GATTCGTGCCTCAGCTGCAACCGAAACCATAGAGAAAACTGAGACTGCGCTG- GATCC_BamHI
pTP11pTP11
Kpn LGGTACCATGGCGTCTTCTTCTTCTCTCACTCTCTCTCAAGCTATCCTCTCTC GTTCTGTCCCTCGCCATGGCTCTGCCTCTTCTTCTCAACTTTCCCCTTCTTCTCT- CACI I I I I CCGGCCTTAAATCCAATCCCAATATCACCACCTCCCGCCGCCG- TACTCCTTCCTCCGCCGCCGCCGCCGCCGTCGTAAGGTCACCGGC- GATTCGTGCCTCAGCTGCAACCGAAACCATAGAGAAAACTGAGACTGCGGG- GATCC_BamHIKpn LGGTACCATGGCGTCTTCTTCTTCTCTCACTCTCTCTCAAGCTATCCTCTCTC GTTCTGTCCCTCGCCATGGCTCTGCCTCTTCTTCTCAACTTTCCCCTTCTTCTCT- CACI IIII CCGGCCTTAAATCCAATCCCAATATCACCACCTCCCGCCGCCG- TACTCCTTCCTCCGCCGCCGCCGCCGCCGTCGTAAGGTCACCGGC- GATTCGTGCCTCAGCTGCAACCGAAACCATAGAGAAAACTGAGACTGCGGG- GATCC_BamHI
Weitere Beispiele für ein plastidäres Transitpeptid sind das Transitpeptid der plastidä-Further examples of a plastid transit peptide are the transit peptide of the plastid
X ren Isopentenyl-pyrophosphat lsomerase-2 (IPP-2) aus Arabisopsis thaliana und das Transitpeptid der kleinen Untereinheit der Ribulosebisphosphat Carboxylase (rbcS) aus Erbse (Guerineau, F, Woolston, S, Brooks, L, Mullineaux, P (1988) An expression cas- sette for targeting foreign proteins into the chloroplasts. Nucl. Acids Res. 16: 11380).X ren isopentenyl pyrophosphate isomerase-2 (IPP-2) from Arabisopsis thaliana and the transit peptide of the small subunit of ribulose bisphosphate carboxylase (rbcS) from pea (Guerineau, F, Woolston, S, Brooks, L, Mullineaux, P (1988) An expression casette for targeting foreign proteins into the chloroplasts. Nucl. Acids Res. 16: 11380).
Die erfindungsgemäßen Nukleinsäuren können synthetisch hergestellt oder natürlich gewonnen sein oder eine Mischung aus synthetischen und natürlichen Nukleinsäure- Bestandteilen enthalten, sowie aus verschiedenen heterologen Genabschnitten verschiedener Organismen bestehen.The nucleic acids according to the invention can be produced synthetically or obtained naturally or contain a mixture of synthetic and natural nucleic acid constituents, and can consist of different heterologous gene segments from different organisms.
Bevorzugt sind, wie vorstehend beschrieben, synthetische Nukleotid-Sequenzen mit Kodons, die von Pflanzen bevorzugt werden. Diese von Pflanzen bevorzugten Kodons können aus Kodons mit der höchsten Proteinhäufigkeit bestimmt werden, die in den meisten interessanten Pflanzenspezies exprimiert werden.As described above, preference is given to synthetic nucleotide sequences with codons which are preferred by plants. These plant-preferred codons can be determined from the highest protein frequency codons expressed in most interesting plant species.
Bei der Präparation einer Expressionskassette können verschiedene DNA-Fragmente manipuliert werden, um eine Nukleotid-Sequenz zu erhalten, die zweckmäßigerweise in der korrekten Richtung liest und die mit einem korrekten Leseraster ausgestattet ist. Für die Verbindung der DNA-Fragmente miteinander können an die Fragmente Adap- toren oder Linker angesetzt werden.When preparing an expression cassette, various DNA fragments can be manipulated in order to obtain a nucleotide sequence which expediently reads in the correct direction and which is equipped with a correct reading frame. To connect the DNA fragments to one another, adapters or linkers can be attached to the fragments.
Zweckmäßigerweise können die Promotor- und die Terminator-Regionen in Transkrip- tionsrichtung mit einem Linker oder Polylinker, der eine oder mehrere Restriktionsstellen für die Insertion dieser Sequenz enthält, versehen werden. In der Regel hat der Linker 1 bis 10, meistens 1 bis 8, vorzugsweise 2 bis 6 Restriktionsstellen. Im allgemeinen hat der Linker innerhalb der regulatorischen Bereiche eine Größe von weniger als 100 bp, häufig weniger als 60 bp, mindestens jedoch 5 bp. Der Promotor kann so- wohl nativ bzw. homolog als auch fremdartig bzw. heterolog zur Wirtspflanze sein. Die Expressionskassette beinhaltet vorzugsweise in der 5'-3'-Transkriptionsrichtung den Promotor, eine kodierende Nukleinsauresequenz oder ein Nukleinsäurekonstrukt und eine Region für die transkriptionale Termination. Verschiedene Terminationsbereiche sind gegeneinander beliebig austauschbar.The promoter and terminator regions can expediently be provided in the transcription direction with a linker or polylinker which contains one or more restriction sites for the insertion of this sequence. As a rule, the linker has 1 to 10, usually 1 to 8, preferably 2 to 6, restriction sites. In general, the linker has a size of less than 100 bp, often less than 60 bp, but at least 5 bp within the regulatory ranges. The promoter can be native or homologous as well as foreign or heterologous to the host plant. The expression cassette preferably contains the promoter, a coding nucleic acid sequence or a nucleic acid construct and a region for the transcriptional termination in the 5'-3 'transcription direction. Different termination areas are interchangeable.
Beispiele für einen Terminator sind der 35S-Terminator (Guerineau et al. (1988) Nucl Acids Res. 16: 11380), der nos Terminator (Depicker A, Stachel S, Dhaese P, Zambryski P, Goodman HM. Nopaline synthase: transcript mapping and DNA sequen- ce. J Mol Appl Genet. 1982;1 (6):561-73) oder der ocs Terminator (Gielen, J, de Beu- ckeleer, M, Seurinck, J, Debroek, H, de Greve, H, Lemmers, M, van Montagu, M,Examples of a terminator are the 35S terminator (Guerineau et al. (1988) Nucl Acids Res. 16: 11380), the nos terminator (Depicker A, Stachel S, Dhaese P, Zambryski P, Goodman HM. Nopaline synthase: transcript mapping and DNA sequence. J Mol Appl Genet. 1982; 1 (6): 561-73) or the ocs terminator (Gielen, J, de Beuckeleer, M, Seurinck, J, Debroek, H, de Greve, H , Lemmers, M, van Montagu, M,
Schell, J (1984) The complete sequence of the TL-DNA of the Agrobacterium tumefa- ciens plasmid pTiAchδ. EMBO J. 3: 835-846).Schell, J (1984) The complete sequence of the TL-DNA of the Agrobacterium tumefaciens plasmid pTiAchδ. EMBO J. 3: 835-846).
Ferner können Manipulationen, die passende Restriktionsschnittstellen bereitstellen oder die überflüssige DNA oder Restriktionsschnittstellen entfernen, eingesetzt werden. Wo Insertionen, Deletionen oder Substitutionen wie z.B. Transitionen und Transversionen in Frage kommen, können in w'tro-Mutagenese, "primer-repair", Restriktion oder Ligation verwendet werden.Manipulations which provide suitable restriction sites or which remove superfluous DNA or restriction sites can also be used. Where insertions, deletions or substitutions such as, for example, transitions and transversions come into question, w ' tro mutagenesis, "primer repair", restriction or ligation can be used.
Bei geeigneten Manipulationen, wie z.B. Restriktion, "chewing-back" oder Auffüllen von Überhängen für "bluntends", können komplementäre Enden der Fragmente für die Ligation zur Verfügung gestellt werden.With suitable manipulations, e.g. Restriction, "chewing-back" or filling of overhangs for "bluntends", complementary ends of the fragments can be made available for the ligation.
Bevorzugte Polyadenylierungssignale sind pflanzliche Polyadenyiierungssignale, vor- zugsweise solche, die im wesentlichen T-DNA-Polyadenylierungssignale aus Agrobacterium tumefaciens, insbesondere des Gens 3 der T-DNA (Octopin Synthase) des Ti- Plasmids pTiACHδ entsprechen (Gielen et al., EMBO J. 3 (1984), 835 ff) oder funktio- nelle Äquivalente.Preferred polyadenylation signals are plant polyadenylation signals, preferably those which essentially contain T-DNA polyadenylation signals from Agrobacterium tumefaciens, in particular gene 3 of T-DNA (octopine synthase) from Ti Plasmids correspond to pTiACHδ (Gielen et al., EMBO J. 3 (1984), 835 ff) or functional equivalents.
Die Übertragung von Fremdgenen in das Genom einer Pflanze wird als Transformation bezeichnet.The transfer of foreign genes into the genome of a plant is called transformation.
Dazu können an sich bekannte Methoden zur Transformation und Regeneration von Pflanzen aus Pflanzengeweben oder Pflanzenzellen zur transienten oder stabilen Transformation genutzt werden.Methods known per se for the transformation and regeneration of plants from plant tissues or plant cells for transient or stable transformation can be used for this purpose.
Geeignete Methoden zur Transformation von Pflanzen sind die Protoplastentransfor- mation durch Polyethylenglykol-induzierte DNA-Aufnahme, das biolistische Verfahren mit der Genkanone - die sogenannte "particle bombardment" Methode, die Elektropo- ration, die Inkubation trockener Embryonen in DNA-haltiger Lösung, die Mikroinjektion und der, vorstehend beschriebene, durch Agrobacterium vermittelte Gentransfer. Die genannten Verfahren sind beispielsweise in B. Jenes et al., Techniques for Gene Transfer, in: Transgenic Plants, Vol. 1, Engineering and Utilization, herausgegeben von S.D. Kung und R. Wu, Academic Press (1993), 128-143 sowie in Potrykus, Annu. Rev. Plant Physiol. Plant Molec. Biol. 42 (1991), 205-225) beschrieben.Suitable methods for the transformation of plants are protoplast transformation by polyethylene glycol-induced DNA uptake, the biolistic method with the gene gun - the so-called "particle bombardment" method, electroporation, the incubation of dry embryos in DNA-containing solution, the Microinjection and the Agrobacterium-mediated gene transfer described above. The methods mentioned are described, for example, in B. Jenes et al., Techniques for Gene Transfer, in: Transgenic Plants, Vol. 1, Engineering and Utilization, published by S.D. Kung and R. Wu, Academic Press (1993), 128-143 and in Potrykus, Annu. Rev. Plant Physiol. Plant Molec. Biol. 42 (1991), 205-225).
Vorzugsweise wird das zu exprimierende Konstrukt in einen Vektor kloniert, der geeignet ist, Agrobacterium tumefaciens zu transformieren, beispielsweise pBin19 (Bevan et al., Nucl. Acids Res. 12 (1984), 8711) oder besonders bevorzugt pSUN2, pSUN3, pSUN4 oder pSUN5 (WO 02/00900).The construct to be expressed is preferably cloned into a vector which is suitable for transforming Agrobacterium tumefaciens, for example pBin19 (Bevan et al., Nucl. Acids Res. 12 (1984), 8711) or particularly preferably pSUN2, pSUN3, pSUN4 or pSUN5 (WO 02/00900).
Mit einem Expressionsplasmid transformierte Agrobakterien können in bekannter Weise zur Transformation von Pflanzen verwendet werden, z.B. indem verwundete Blätter oder Blattstücke in einer Agrobakterienlösung gebadet und anschließend in geeigneten Medien kultiviert werden.Agrobacteria transformed with an expression plasmid can be used in a known manner to transform plants, e.g. by bathing wounded leaves or leaf pieces in an agrobacterial solution and then cultivating them in suitable media.
Zur bevorzugten Herstellung von genetisch veränderten Pflanzen, im folgenden auch transgene Pflanzen bezeichnet, wird die fusionierte Expressionskassette, die eine Ketolase exprimiert, in einen Vektor, beispielsweise pBin19 oder insbesondere pSUN5 und pSUN3 kloniert, der geeignet ist, in Agrobacterium tumefaciens transformiert zu werden. Mit einem solchen Vektor transformierte Agrobakterien können dann in bekannter Weise zur Transformation von Pflanzen, insbesondere von Kulturpflanzen ver- wendet werden, indem beispielsweise verwundete Blätter oder Blattstücke in einer Agrobakterienlösung gebadet und anschließend in geeigneten Medien kultiviert werden.For the preferred production of genetically modified plants, hereinafter also referred to as transgenic plants, the fused expression cassette which expresses a ketolase is cloned into a vector, for example pBin19 or in particular pSUN5 and pSUN3, which is suitable for being transformed into Agrobacterium tumefaciens. Agrobacteria transformed with such a vector can then be used in a known manner to transform plants, in particular cultivated plants. are used, for example, by bathing wounded leaves or leaf pieces in an agrobacterial solution and then cultivating them in suitable media.
Die Transformation von Pflanzen durch Agrobakterien ist unter anderem bekannt aus F.F. White, Vectors for Gene Transfer in Higher Plants; in Transgenic Plants, Vol. 1 , Engineering and Utilization, herausgegeben von S.D. Kung und R. Wu, Academic Press, 1993, S. 15-38. Aus den transformierten Zellen der verwundeten Blätter bzw. Blattstücke können in bekannter Weise transgene Pflanzen regeneriert werden, die ein in die Expressionskassette integriertes Gen für die Expression einer Nukleinsäure, kodierend eine Ketolase, enthalten.The transformation of plants by agrobacteria is known, among other things, from F.F. White, Vectors for Gene Transfer in Higher Plants; in Transgenic Plants, Vol. 1, Engineering and Utilization, edited by S.D. Kung and R. Wu, Academic Press, 1993, pp. 15-38. From the transformed cells of the wounded leaves or leaf pieces, transgenic plants can be regenerated in a known manner which contain a gene integrated into the expression cassette for the expression of a nucleic acid encoding a ketolase.
Zur Transformation einer Wirtspflanze mit einer für eine Ketolase kodierenden Nukleinsäure wird eine Expressionskassette als Insertion in einen rekombinanten Vektor ein- gebaut, dessen Vektor-DNA zusätzliche funktionelle Regulationssignale, beispielsweise Sequenzen für Replikation oder Integration enthält. Geeignete Vektoren sind unter anderem in "Methods in Plant Molecular Biology and Biotechnology" (CRC Press), Kap. 6/7, S. 71-119 (1993) beschrieben.To transform a host plant with a nucleic acid coding for a ketolase, an expression cassette is inserted as an insert in a recombinant vector whose vector DNA contains additional functional regulation signals, for example sequences for replication or integration. Suitable vectors are inter alia in "Methods in Plant Molecular Biology and Biotechnology" (CRC Press), Chap. 6/7, pp. 71-119 (1993).
Unter Verwendung der oben zitierten Rekombinations- und Klonierungstechniken können die Expressionskassetten in geeignete Vektoren kloniert werden, die ihre Vermehrung, beispielsweise in E. coli, ermöglichen. Geeignete Klonierungsvektoren sind u.a. PJIT117 (Guerineau et al. (1988) Nucl. Acids Res.16 :11380), pBR332, pUC-Serien, M13mp-Serien und pACYC184. Besonders geeignet sind binäre Vektoren, die sowohl in E. coli als auch in Agrobakterien replizieren können.Using the recombination and cloning techniques cited above, the expression cassettes can be cloned into suitable vectors that allow their proliferation, for example in E. coli. Suitable cloning vectors include PJIT117 (Guerineau et al. (1988) Nucl. Acids Res. 16: 11380), pBR332, pUC series, M13mp series and pACYC184. Binary vectors which can replicate both in E. coli and in agrobacteria are particularly suitable.
Im folgenden wird die Herstellung der erfindungsgemäßen gentisch veränderten Mikroorganismen näher beschrieben:The production of the genetically modified microorganisms according to the invention is described in more detail below:
Die vorstehend beschriebenen Nukleinsäuren, kodierend eine Ketolase oder ß-The nucleic acids described above, coding for a ketolase or β-
Hydroxylase oder ß-Cyclase sind vorzugsweise in Expressionskonstrukte eingebaut, enthaltend unter der genetischen Kontrolle regulativer Nukleinsäuresequenzen eine für ein erfindungsgemäßes Enzym kodierende Nukleinsauresequenz; sowie Vektoren, umfassend wenigstens eines dieser Expressionskonstrukte. Vorzugsweise umfassen solche erfindungsgemäßen Konstrukte 5'-stromaufwärts von der jeweiligen kodierenden Sequenz einen Promotor und 3'-stromabwärts eine Terminatorsequenz sowie gegebenenfalls weitere übliche regulative Elemente, und zwar jeweils operativ verknüpft mit der kodierenden Sequenz. Unter einer "operativen Ver- knüpfung" versteht man die sequentielle Anordnung von Promotor, kodierender Sequenz, Terminator und gegebenenfalls weiterer regulativer Elemente derart, dass jedes der regulativen Elemente seine Funktion bei der Expression der kodierenden Sequenz bestimmungsgemäß erfüllen kann.Hydroxylase or β-cyclase are preferably incorporated into expression constructs containing, under the genetic control of regulatory nucleic acid sequences, a nucleic acid sequence coding for an enzyme according to the invention; and vectors comprising at least one of these expression constructs. Such constructs according to the invention preferably comprise a promoter 5'-upstream of the respective coding sequence and a terminator sequence 3'-downstream and, if appropriate, further customary regulatory elements, in each case operatively linked to the coding sequence. An “operative linkage” is understood to mean the sequential arrangement of promoter, coding sequence, terminator and, if appropriate, further regulatory elements in such a way that each of the regulatory elements can perform its function as intended when expressing the coding sequence.
Beispiele für operativ verknüpfbare Sequenzen sind Targeting-Sequenzen sowieExamples of sequences which can be linked operatively are targeting sequences as well
Translationsverstärker, Enhancer, Polyadenylierungssignale und dergleichen. Weitere regulative Elemente umfassen selektierbare Marker, Amplifikationssignale, Replikati- onsursprünge und dergleichen.Translation enhancers, enhancers, polyadenylation signals and the like. Further regulatory elements include selectable markers, amplification signals, origins of replication and the like.
Zusätzlich zu den artifiziellen Regulationssequenzen kann die natürliche Regulationssequenz vor dem eigentlichen Strukturgen noch vorhanden sein. Durch genetische Veränderung kann diese natürliche Regulation gegebenenfalls ausgeschaltet und dieIn addition to the artificial regulatory sequences, the natural regulatory sequence can still be present before the actual structural gene. This natural regulation can possibly be switched off by genetic modification and the
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Expression der Gene erhöht oder erniedrigt werden. Das Genkonstrukt kann aber auch einfacher aufgebaut sein, das heißt es werden keine zusätzlichen Regulationssignale vor das Strukturgen insertiert und der natürliche Promotor mit seiner Regulation wird nicht entfernt. Statt dessen wird die natürliche Regulationssequenz so mutiert, dass keine Regulation mehr erfolgt und die Genexpression gesteigert oder verringert wird. Die Nukleinsäuresequenzen können in einer oder mehreren Kopien im Genkonstrukt enthalten sein.Expression of the genes can be increased or decreased. However, the gene construct can also have a simpler structure, ie no additional regulation signals are inserted in front of the structural gene and the natural promoter with its regulation is not removed. Instead, the natural regulatory sequence is mutated so that regulation no longer takes place and gene expression is increased or decreased. The nucleic acid sequences can be contained in one or more copies in the gene construct.
Beispiele für brauchbare Promotoren in Mikroorganismen sind: cos-, tac-, trp-, tet-, trp- tet-, Ipp-, lac-, Ipp-lac-, laclq-, T7-, T5-, T3-, gal-, trc-, ara-, SP6-, lambda-PR- oder im lambda-PL-Promotor, die vorteilhafterweise in gram-negativen Bakterien Anwendung finden; sowie die gram-positiven Promotoren amy und SPO2 oder die Hefepromotoren ADC1 , MFa , AC, P-60, CYC1 , GAPDH. Besonders bevorzugt ist die Verwendung induzierbarer Promotoren, wie z.B. licht- und insbesondere temperaturinduzierbarer Promotoren, wie der PrPrPromotor. Prinzipiell können alle natürlichen Prorriotoren mit ihren Regulationssequenzen verwendet werden. Darüber hinaus können auch synthetische Promotoren vorteilhaft verwendet werden.Examples of useful promoters in microorganisms are: cos-, tac-, trp-, tet-, trp-tet-, Ipp-, lac-, Ipp-lac-, laclq-, T7-, T5-, T3-, gal- , trc, ara, SP6, lambda PR or in the lambda PL promoter, which are advantageously used in gram-negative bacteria; as well as the gram-positive promoters amy and SPO2 or the yeast promoters ADC1, MFa, AC, P-60, CYC1, GAPDH. The use of inducible promoters, such as, for example, light and in particular temperature-inducible promoters, such as the P r P r promoter, is particularly preferred. In principle, all natural prorriotors with their regulatory sequences can be used. In addition, synthetic promoters can also be used advantageously.
Die genannten regulatorischen Sequenzen sollen die gezielte Expression der Nukleinsäuresequenzen und die Proteinexpression ermöglichen. Dies kann beispielsweise je nach Wirtsorganismus bedeuten, dass das Gen erst nach Induktion exprimiert oder überexprimiert wird, oder dass es sofort exprimiert und/oder überexprimiert wird.The regulatory sequences mentioned are intended to enable the targeted expression of the nucleic acid sequences and the protein expression. Depending on the host organism, this can mean, for example, that the gene is only expressed or overexpressed after induction, or that it is expressed and / or overexpressed immediately.
Die regulatorischen Sequenzen bzw. Faktoren können dabei vorzugsweise die Expression positiv beeinflussen und dadurch erhöhen oder erniedrigen. So kann eine Verstärkung der regulatorischen Elemente vorteilhafterweise auf der Transkriptionsebene erfolgen, indem starke Transkriptionssignale wie Promotoren und/oder "Enhancer" verwendet werden. Daneben ist aber auch eine Verstärkung der Translation möglich, in- dem beispielsweise die Stabilität der mRNA verbessert wird.The regulatory sequences or factors can preferably have a positive influence on the expression and thereby increase or decrease it. Thus, the regulatory elements can advantageously be strengthened at the transcription level by using strong transcription signals such as promoters and / or "enhancers". In addition, an increase in translation is also possible, for example, by improving the stability of the mRNA.
Die Herstellung einer Expressionskassette erfolgt durch Fusion eines geeigneten Promotors mit den vorstehend beschriebenen Nukleinsäuresequenzen, kodierend eine Ketolase, ß-Hydroxylase oder ß-Cyclase sowie einem Terminator- oder Polyadenylie- rungssignal. Dazu verwendet man gängige Rekombinations- und Klonierungstechniken, wie sie beispielsweise in T. Maniatis, E.F. Fritsch und J. Sambrook, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989) sowie in T.J. Silhavy, M.L. Berman und L.W. Enquist, Experiments with Gene Fusions, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1984) und in Ausu- bei, F.M. et al., Current Protocols in Molecular Biology, Greene Publishing Assoc. and Wiley Interscience (1987) beschrieben sind.An expression cassette is produced by fusing a suitable promoter with the nucleic acid sequences described above, encoding a ketolase, β-hydroxylase or β-cyclase and a terminator or polyadenylation signal. Common recombination and cloning techniques are used, such as those described in T. Maniatis, E.F. Fritsch and J. Sambrook, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989) and in T.J. Silhavy, M.L. Berman and L.W. Enquist, Experiments with Gene Fusions, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1984) and in Ausu, F.M. et al., Current Protocols in Molecular Biology, Greene Publishing Assoc. and Wiley Interscience (1987).
Das rekombinante Nukleinsäurekonstrukt bzw. Genkonstrukt wird zur Expression in einem geeigneten Wirtsorganismus vorteilhafterweise in einen wirtsspezifischen Vektor insertiert, der eine optimale Expression der Gene im Wirt ermöglicht. Vektoren sind dem Fachmann wohl bekannt und können beispielsweise aus "Cloning Vectors" (Pou- wels P. H. et al., Hrsg, Elsevier, Amsterdam-New York-Oxford, 1985) entnommen werden. Unter Vektoren sind außer Plasmiden auch alle anderen dem Fachmann bekannte Vektoren, wie beispielsweise Phagen, Viren, wie SV40, CMV, Baculovirus und Ade- novirus, Transposons, IS-Elemente, Phasmide, Cosmide, und lineare oder zirkuläre DNA zu verstehen. Diese Vektoren körinen autonom im Wirtsorganismus repliziert oder chromosomal repliziert werden.For expression in a suitable host organism, the recombinant nucleic acid construct or gene construct is advantageously inserted into a host-specific vector which enables optimal expression of the genes in the host. Vectors are well known to those skilled in the art and can be found, for example, in "Cloning Vectors" (Pouwels PH et al., Ed., Elsevier, Amsterdam-New York-Oxford, 1985). In addition to plasmids, vectors also include all other vectors known to the person skilled in the art, such as, for example, phages, viruses such as SV40, CMV, baculovirus and adevirus, transposons, IS elements, phasmids, cosmids, and linear or circular Understand DNA. These vectors can be replicated autonomously in the host organism or replicated chromosomally.
Als Beispiele für geeignete Expressionsvektoren können genannt werden:The following may be mentioned as examples of suitable expression vectors:
Übliche Fusionsexpressionsvektoren, wie pGEX (Pharmacia Biotech ine; Smith, D.B. und Johnson, K.S. (1988) Gene 67:31-40), pMAL (New England Biolabs, Beverly, MA) und pRIT 5 (Pharmacia, Piscataway, NJ), bei denen Glutathion-S-Transferase (GST), Maltose E-bindendes Protein bzw. Protein A an das rekombinante Zielprotein fusioniert wird.Common fusion expression vectors such as pGEX (Pharmacia Biotech ine; Smith, DB and Johnson, KS (1988) Gene 67: 31-40), pMAL (New England Biolabs, Beverly, MA) and pRIT 5 (Pharmacia, Piscataway, NJ) which glutathione-S-transferase (GST), maltose E-binding protein or protein A is fused to the recombinant target protein.
Nicht-Fusionsprotein-Expressionsvektoren wie pTrc (Amann et al., (1988) Gene 69:301-315) und pET 11d (Studier et al. Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Kalifornien (19gθ) 60-89) oder pBluesc- ript und pUC- Vektoren.Non-fusion protein expression vectors such as pTrc (Amann et al., (1988) Gene 69: 301-315) and pET 11d (Studier et al. Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, California (19gθ) 60-89) or pBluescript and pUC vectors.
Hefe-Expressionsvektor zur Expression in der Hefe S. cerevisiae , wie pYepSed (Bal- dari et al., (1987) Embo J. 6:229-234), pMFa (Kurjan und Herskowitz (1982) Cell 30:933-943), pJRY88 (Schultz et al. (1987) Gene 54:113-123) sowie pYES2 (Invitrogen Corporation, San Diego, CA).Yeast expression vector for expression in the yeast S. cerevisiae, such as pYepSed (Baldari et al., (1987) Embo J. 6: 229-234), pMFa (Kurjan and Herskowitz (1982) Cell 30: 933-943) , pJRY88 (Schultz et al. (1987) Gene 54: 113-123) and pYES2 (Invitrogen Corporation, San Diego, CA).
Vektoren und Verfahren zur Konstruktion von Vektoren, die sich zur Verwendung in anderen Pilzen, wie filamentösen Pilzen, eignen, umfassen diejenigen, die eingehend beschrieben sind in: van den Hondel, C.A.M.J.J. & Punt, P.J. (1991) "Gene transfer Systems and vector development for filamentous fungi, in: Applied Molecular Genetics of Fungi, J.F. Peberdy et al., Hrsg., S. 1-28, Cambridge University Press: Cambridge.Vectors and methods of constructing vectors suitable for use in other fungi such as filamentous fungi include those described in detail in: van den Hondel, C.A.M.J.J. & Punt, P.J. (1991) "Gene transfer Systems and vector development for filamentous fungi, in: Applied Molecular Genetics of Fungi, J.F. Peberdy et al., Eds., Pp. 1-28, Cambridge University Press: Cambridge.
Baculovirus-Vektoren, die zur Expression von Proteinen in gezüchteten Insektenzellen (bspw. Sf9-Zellen) verfügbar sind, umfassen die pAc-Reihe (Smith et al., (1983) Mol. Cell Biol.. 3:2156-2165) und die pVL-Reihe (Lucklow und Summers (1989) Virology 170:31-39).Baculovirus vectors available for expression of proteins in cultured insect cells (e.g. Sf9 cells) include the pAc series (Smith et al., (1983) Mol. Cell Biol .. 3: 2156-2165) and pVL series (Lucklow and Summers (1989) Virology 170: 31-39).
Weitere geeignete Expressionssysteme für prokaryontische und eukaryotische Zellen sind in Kapitel 16 und 17 von Sambrook, J., Fritsch, E.F. und Maniatis, T., Molecular cloning: A Laboratory Manual, 2. Auflage, Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989 beschrieben. Mit Hilfe der erfindungsgemäßen Expressionskonstrukte bzw. Vektoren sind genetisch veränderte Mikroorganismen herstellbar, welche beispielsweise mit wenigstens einem erfindungsgemäßen Vektor transformiert sind.Further suitable expression systems for prokaryotic and eukaryotic cells are in chapters 16 and 17 of Sambrook, J., Fritsch, EF and Maniatis, T., Molecular cloning: A Laboratory Manual, 2nd edition, Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press , Cold Spring Harbor, NY, 1989. The expression constructs or vectors according to the invention can be used to produce genetically modified microorganisms which have been transformed, for example, with at least one vector according to the invention.
Vorteilhafterweise werden die oben beschriebenen erfindungsgemäßen rekombinanten Konstrukte in ein geeignetes Wirtssystem eingebracht und exprimiert. Dabei werden vorzugsweise dem Fachmann bekannte geläufige Klonierungs- und Transfektions- methoden, wie beispielsweise Co-Präzipitation, Protoplastenfusion, Elektroporation, retrovirale Transfektion und dergleichen, verwendet, um die genannten Nukleinsäuren im jeweiligen Expressionssystem zur Expression zu bringen. Geeignete Systeme werden beispielsweise in Current Protocols in Molecular Biology, F. Ausubel et al., Hrsg., Wiley Interscience, New York 1997, beschrieben.The recombinant constructs according to the invention described above are advantageously introduced and expressed in a suitable host system. Common cloning and transfection methods known to the person skilled in the art, such as, for example, co-precipitation, protoplast fusion, electroporation, retroviral transfection and the like, are preferably used to bring the nucleic acids mentioned into expression in the respective expression system. Suitable systems are described, for example, in Current Protocols in Molecular Biology, F. Ausubel et al., Ed., Wiley Interscience, New York 1997.
Die Selektion erfolgreich transformierter Organismen kann durch Markergene erfolgen, die ebenfalls im Vektor oder in der Expressionskassette enthalten sind. Beispiele für solche Markergene sind Gene für Antibiotikaresistenz und für Enzyme, die eine farb- gebende Reaktion katalysieren, die ein Anfärben der transformierten Zelle bewirkt. Diese können dann mittels automatischer Zellsortierung selektiert werden.Successfully transformed organisms can be selected using marker genes, which are also contained in the vector or in the expression cassette. Examples of such marker genes are genes for antibiotic resistance and for enzymes which catalyze a coloring reaction which stains the transformed cell. These can then be selected using automatic cell sorting.
Erfolgreich mit einem Vektor transformierte Mikroorganismen, die ein entsprechendes Antibiotikaresistenzgen (z.B. G418 oder Hygromycin) tragen, lassen sich durch entsprechende Antibiotika-enthaltende Medien oder Nährböden selektieren. Markerproteine, die an der Zelloberfläche präsentiert werden, können zur Selektion mittels Affinitätschromatographie genutzt werden.Microorganisms successfully transformed with a vector and carrying an appropriate antibiotic resistance gene (e.g. G418 or hygromycin) can be selected using appropriate antibiotic-containing media or nutrient media. Marker proteins that are presented on the cell surface can be used for selection by means of affinity chromatography.
Die Kombination aus den Wirtsorganismen und den zu den Organismen passenden Vektoren, wie Plasmide, Viren oder Phagen, wie beispielsweise Plasmide mit dem RNA-Polymerase/Promoter-System, die Phagen 8 oder andere temperente Phagen oder Transposons und/oder weiteren vorteilhaften regulatorischen Sequenzen bildet ein Expressionssystem.The combination of the host organisms and the vectors which match the organisms, such as plasmids, viruses or phages, such as, for example, plasmids with the RNA polymerase / promoter system, which forms phages 8 or other temperate phages or transposons and / or further advantageous regulatory sequences an expression system.
Die Erfindung betrifft ferner ein Verfahren zur Herstellung von genetisch veränderten Organismen, dadurch gekennzeichnet, das man ein Nukleinsäurekonstrukt, enthaltend funktionell verknüpft einen Promotor und Nukleinsäuren, kodierend eine Ketolase, ent- haltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Amiήosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist, und gegebenenfalls einen Terminator in das Genom des Ausgangsorganismus oder extrachromosomal in den Ausgangsorganismus einführt.The invention further relates to a method for producing genetically modified organisms, characterized in that a nucleic acid construct comprising functionally linked a promoter and nucleic acids encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which a Identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2, and optionally introduces a terminator into the genome of the starting organism or extrachromosomally into the starting organism.
Die Erfindung betrifft ferner die genetisch veränderten Organismen, wobei die genetische Veränderung die Aktivität einer KetolaseThe invention further relates to the genetically modified organisms, the genetic modification being the activity of a ketolase
A für den Fall, dass der Wildtyporganismus bereits eine Ketolase-Aktivität aufweist, gegenüber dem Wildtyp erhöht undA in the event that the wild-type organism already has ketolase activity, increased compared to the wild-type and
B für den Fall, dass der Wildtyporganismus keine Ketolase-Aktivitätaufweist, gegenüber dem Wildtyp verursachtB in the event that the wild-type organism has no ketolase activity against the wild-type
und die nach A erhöhte oder nach B verursachte Ketolase-Aktivität durch eine Ketolase verursacht wird, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.and the ketolase activity increased after A or caused after B is caused by a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
Wie vorstehend ausgeführt erfolgt die Erhöhung oder Verursachung der Ketolase- Aktivität gegenüber dem Wildtyp vorzugsweise durch eine Erhöhung oder Verursachung der Genexpression einer Nukleinsäure, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.As stated above, the ketolase activity is increased or caused compared to the wild type, preferably by increasing or causing the gene expression of a nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
In einer weiter bevorzugten Ausführungsform erfolgt, wie vorstehend ausgeführt, die Erhöhung oder Verursachung der Genexpression einer Nukleinsäure, kodierend eine Ketolase, durch Einbringen von Nukleinsäuren, kodierend eine Ketolase, in die Pflan- zen und damit vorzugsweise durch Überexpression oder transgene Expression von Nukleinsäuren, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist. Die Erfindung betrifft ferner einen genetisch veränderten Organismus, enthaltend mindestens eine transgene Nukleinsäure, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von min- destens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist. Dies ist der Fall, wenn der Ausgangsorganismus keine Ketolase oder eine endogen Ketolase aufweist und eine transgene Ketolase überexprimiert wird.In a further preferred embodiment, as stated above, the gene expression of a nucleic acid, coding for a ketolase, is increased or caused by introducing nucleic acids, coding for a ketolase, into the plants and thus preferably for overexpression or transgenic expression of nucleic acids, coding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has. The invention further relates to a genetically modified organism containing at least one transgenic nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has. This is the case if the starting organism has no ketolase or an endogenous ketolase and a transgenic ketolase is overexpressed.
Die Erfindung betrifft ferner einen genetisch veränderten Organismus, enthaltend min- destens zwei endogene Nukleinsäuren, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist. Dies ist der Fall, wenn der Ausgangsorganismus eine endogen Ketolase aufweist und die endogene Ketolase überexprimiert wird.The invention further relates to a genetically modified organism containing at least two endogenous nucleic acids encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has. This is the case if the starting organism has an endogenous ketolase and the endogenous ketolase is overexpressed.
Besonders bevorzugte, genetisch veränderte Organismen weisen, wie vorstehend er- x wähnt, zusätzlich eine erhöhte Hydroxlase-Aktivität und/oder ß-Cyclase-Aktivität gegenüber einem Wildtyporganismus auf. Weiter bevorzugte Ausführungsformen sind vorstehend im erfindungsgemäßen Verfahren beschrieben.Particularly preferred, genetically modified organisms, as mentioned above, additionally have an increased hydroxlase activity and / or β-cyclase activity compared to a wild-type organism. Further preferred embodiments are described above in the method according to the invention.
Unter Organismen werden erfindungsgemäß vorzugsweise Organismen verstanden, die als Wildtyp- oder Ausgangsorganismen natürlicherweise oder durch genetische Komplementierung und/oder Umregulierung der Stoffwechselwege in der Lage sind, Carotinoide, insbesondere ß-Carotin und/oder Zeaxanthin und/oder Neoxanthin und/oder Violaxanthin und/oder Lutein herzustellen.According to the invention, organisms are preferably understood to mean organisms which, as wild-type or starting organisms, naturally or by genetic complementation and / or reorganization of the metabolic pathways, are capable of producing carotenoids, in particular β-carotene and / or zeaxanthin and / or neoxanthine and / or violaxanthin and / or to produce lutein.
Weiter bevorzugte Organismen weisen als Wildtyp- oder Ausgangsorganismen bereits eine Hydroxylase-Aktivität auf und sind somit als Wildtyp- oder Ausgangsorganismen in der Lage, Zeaxanthin herzustellen.Further preferred organisms already have hydroxylase activity as wild-type or starting organisms and are therefore capable of producing zeaxanthin as wild-type or starting organisms.
Bevorzugte Organismen sind Pflanzen oder Mikroorganismen, wie beispielsweise Bakterien, Hefen, Algen oder Pilze.Preferred organisms are plants or microorganisms, such as bacteria, yeasts, algae or fungi.
Als Bakterien können sowohl Bakterien verwendet werden, die aufgrund des Einbringens von Genen der Carotinoidbiosynthese eines Carotinoid-produzierenden Organis- mus in der Lage sind, Xanthophylle zu synthetisieren, wie beispielsweise Bakterien der Gattung Escherichia, die beispielsweise crt-Gene aus Erwinia enthalten, als auch Bakterien, die von sich aus in der Lage sind, Xanthophylle zu synthetisieren wie beispielsweise Bakterien der Gattung Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc oder Cyanobakterien der Gattung Synechocystis.Both bacteria can be used as bacteria which, due to the introduction of genes of the carotenoid biosynthesis of a carotenoid-producing organism, must be able to synthesize xanthophylls, such as, for example, bacteria of the genus Escherichia, which, for example, contain crt genes from Erwinia, and also bacteria which are capable of synthesizing xanthophylls, such as, for example, bacteria of the genus Erwinia, Agrobacterium , Flavobacterium, Alcaligenes, Paracoccus, Nostoc or cyanobacteria of the genus Synechocystis.
Bevorzugte Bakterien sind Escherichia coli, .Erwinia herbicola, Erwinia uredovora, Agrobacterium aurantiacum, Alcaligenes sp. PC-1 , Flavobacterium sp. strain R1534, das Cyanobacterium Synechocystis sp. PCC6803, Paracoccus marcusii oder Paracoc- cus carotinifaciens.Preferred bacteria are Escherichia coli, .Erwinia herbicola, Erwinia uredovora, Agrobacterium aurantiacum, Alcaligenes sp. PC-1, Flavobacterium sp. strain R1534, the Cyanobacterium Synechocystis sp. PCC6803, Paracoccus marcusii or Paracoccus carotinifaciens.
Bevorzugte Hefen sind Candida, Saccharomyces, Hansenula, Pichia oder Phaffia. Besonders bevorzugte Hefen sind Xanthophyllomyces dendrorhous oder Phaffia rhodozyma.Preferred yeasts are Candida, Saccharomyces, Hansenula, Pichia or Phaffia. Particularly preferred yeasts are Xanthophyllomyces dendrorhous or Phaffia rhodozyma.
Bevorzugte Pilze sind Aspergillus, Trichoderma, Ashbya, Neurospora, Blakeslea, Phy- comyces, Fusarium oder weitere in Indian Chem. Engr. Section B. Vol. 37, No. 1, 2Preferred fungi are Aspergillus, Trichoderma, Ashbya, Neurospora, Blakeslea, Phycomyces, Fusarium or others in Indian Chem. Engr. Section B. Vol. 37, No. 1, 2
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(1995) auf Seite 15, Tabelle 6 beschriebene Pilze.(1995) on page 15, table 6 described mushrooms.
Bevorzugte Algen sind Grünalgen, wie beispielsweise Algen der Gattung Haematococcus, Phaedactylum tricornatum, Volvox oder Dunaliella. Besonders bevorzugte Algen sind Haematococcus puvialis oder Dunaliella bardawil.Preferred algae are green algae, such as algae of the genus Haematococcus, Phaedactylum tricornatum, Volvox or Dunaliella. Particularly preferred algae are Haematococcus puvialis or Dunaliella bardawil.
Weitere brauchbare Mikroorganismen und deren Herstellung zur Durchführung des erfindungsgemäßen Verfahrens sind beispielsweise aus der DE-A-199 16 140 bekannt, worauf hiermit Bezug genommen wird.Further useful microorganisms and their preparation for carrying out the method according to the invention are known, for example, from DE-A-199 16 140, to which reference is hereby made.
Besonders bevorzugte Pflanzen sind Pflanzen ausgewählt aus den Familien Ranuncu- laceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Lina- ceae, Vitaceae, Brassicaceae, Cucurbitaceae, Primulaceae, Caryophyllaceae, Ama- ranthaceae, Gentianaceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, •Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Or- chidaceae, Malvaceae, liliaceae oder Lamiaceae.Particularly preferred plants are plants selected from the Ranuncu-laceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Lina- ceae, Vitaceae, Brassicaceae, Cucurbitaceae, Primulaceae, Caryophyllaceae, Amaranthaceae, Geraniaceaeaceae, Gentianaceaeaea, Gentianaceae , • Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Orchidaceae, Malvaceae, liliaceae or Lamiaceae.
Ganz besonders bevorzugte Pflanzen sind ausgewählt aus der Gruppe der Pflanzengattungen Mangold, Tagetes errecta, Tagetes patula, Acacia, Aconitum, Adonis, Ami- ca, Aquilegia, Aster, Astragalus, Bignonia, Calenduia, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia, Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Gre- villea, Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kerria, Laburnum, Lathyrus, Leontodon, Lili- um, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimulus, Narcissus, Oenothera, Osmanthus, Petunia, Photinia, Physalis, Phyteuma, Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Silphium, Sinapsis, Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussi- lago, Ulex, Viola oder Zinnia, besonders bevorzugt ausgewählt aus der Gruppe der Pflanzengattungen Marigold, Tagetes erecta, Tagetes patula, Lycopersicon, Rosa, " Calenduia, Physalis, Medicago, Helianthus, Chrysanthemum, Aster, Tulipa, Narcissus, Petunia, Geranium, Tropaeolum oder Adonis.Very particularly preferred plants are selected from the group of the plant species chard, tagetes errectta, tagetes patula, acacia, aconite, adonis, ami ca, Aquilegia, Aster, Astragalus, Bignonia, Calenduia, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Foria, Forsy Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillea, Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kerria, Laburnum, Lathyrus, Leontodon, Lili- um, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimulus, Narcissus, Oenothera, Osmanthus, Petunia, Photinia, Physalis, Phyteuma, Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Silphium, Sinapsis Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussilago, Ulex, Viola or Zinnia, particularly preferably selected from the group of the plant genera Marigold, Tagetes erecta, Tagetes patula, Lycopersicon, Rosa, " Calend uia, Physalis, Medicago, Helianthus, Chrysanthemum, Aster, Tulipa, Narcissus, Petunia, Geranium, Tropaeolum or Adonis.
Ganz besonders bevorzugte genetisch veränderte Pflanzen sind ausgewählt aus den Pflanzengattungen Marigold, Tagetes erecta, Tagetes patula, Adonis, Lycopersicon; Rosa, Calenduia, Physalis, Medicago, Helianthus, Chrysanthemum, Aster, Tulipa, Narcissus, Petunia, Geranium oder Tropaeolum, wobei die genetisch veränderte Pflanze mindestens eine transgene Nukleinsäure, kodierend eine Ketolase, enthält.Very particularly preferred genetically modified plants are selected from the plant genera Marigold, Tagetes erecta, Tagetes patula, Adonis, Lycopersicon; Rosa, Calenduia, Physalis, Medicago, Helianthus, Chrysanthemum, Aster, Tulipa, Narcissus, Petunia, Geranium or Tropaeolum, the genetically modified plant containing at least one transgenic nucleic acid, coding for a ketolase.
Die transgenen Pflanzen, deren Vermehrungsgut, sowie deren Pflanzenzellen, - gewebe oder -teile, insbesondere deren Früchte, Samen, Blüten und Blütenblätter sind ein weiterer Gegenstand der vorliegenden Erfindung.The present invention further relates to the transgenic plants, their reproductive material and their plant cells, tissue or parts, in particular their fruits, seeds, flowers and petals.
Die genetisch veränderten Pflanzen können, wie vorstehend beschrieben, zur Herstellung von Ketocarotinoiden, insbesondere Astaxanthin verwendet werden.As described above, the genetically modified plants can be used to produce ketocarotenoids, in particular astaxanthin.
Von Menschen und Tieren verzehrbare erfindungsgemäße, genetisch veränderte Or- ganismen, insbesondere Pflanzen oder Pflanzenteile, wie insbesondere Blütenblätter mit erhöhtem Gehalt an Ketocarotinoiden, insbesondere Astaxanthin können auch beispielsweise direkt oder nach an sich bekannter Prozessierung als Nahrungsmittel oder Futtermittel oder als Futter- und Nahrungsergänzungsmittel verwendet werden. Ferner können die genetisch veränderten Organismen zur Herstellung von Ketocaroti- noid-haltigen Extrakten der Organismen und/oder zur Herstellung von Futter- und Nah- rungsergänzungsmitteln verwendet werden.Genetically modified organisms according to the invention which can be consumed by humans and animals, in particular plants or parts of plants, such as in particular petals with an increased content of ketocarotenoids, in particular astaxanthin, can also be used, for example, directly or after processing known per se as foods or feeds or as feed and food supplements become. Furthermore, the genetically modified organisms can be used for the production of ketocarotenoid-containing extracts of the organisms and / or for the production of feed and food supplements.
Die genetisch veränderten Organismen weisen im Vergleich zum Wildtyp einen erhöhten Gehalt an Ketocarotinoiden auf.The genetically modified organisms have an increased ketocarotenoid content compared to the wild type.
Unter einem erhöhten Gehalt an Ketocarotinoiden wird in der Regel ein erhöhter Gehalt an Gesamt-Ketocarotinoid verstanden.An increased ketocarotenoid content is generally understood to mean an increased total ketocarotenoid content.
Unter einem erhöhten Gehalt an Ketocarotinoiden wird aber auch insbesondere ein veränderter Gehalt der bevorzugten Ketocarotinoide verstanden, ohne dass zwangsläufig der Gesamt-Carotinoidgehalt erhöht sein muss.An increased content of ketocarotenoids is also understood to mean, in particular, a changed content of the preferred ketocarotenoids, without the total carotenoid content necessarily having to be increased.
In einer besonders bevorzugten Ausführungsform weisen die erfindungsgemäßen, genetisch veränderten Pflanzen im Vergleich zum Wildtyp einen erhöhten Gehalt an Astaxanthin auf.In a particularly preferred embodiment, the genetically modified plants according to the invention have an increased astaxanthin content compared to the wild type.
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Unter einem erhöhten Gehalt wird in diesem Fall auch ein verursachter Gehalt an Ke- tocarotinoiden, bzw. Astaxanthin verstanden.In this case, an increased content is also understood to mean a caused content of ketocarotenoids or astaxanthin.
Die Erfindung betrifft ferner die neuen Ketolasen sowie die neuen Nukleinsäuren, die diese kodieren.The invention further relates to the new ketolases and the new nucleic acids encoding them.
Insbesondere betrifft die Erfindung Ketolasen, enthaltend die Aminosäuresequenz SEQ. ID. NO. 8 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 70 %, vorzugsweise mindestens 75%, besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindestens 90%, bevorzugter mindestens 95% auf Ami- nosäureebene mit der Sequenz SEQ. ID. NO. 8 aufweist, mit der Maßgabe, dass die Aminosäuresequenzen SEQ ID NO: 4 nicht enthalten ist. Die Sequenz SEQ ID NO: 4 ist, wie vorstehend erwähnt, als putatives Protein in Datenbanken annotiert.In particular, the invention relates to ketolases containing the amino acid sequence SEQ. ID. NO. 8 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 8, with the proviso that the amino acid sequences SEQ ID NO: 4 is not included. The sequence SEQ ID NO: 4, as mentioned above, is annotated as a putative protein in databases.
Ferner betrifft die Erfindung Ketolasen, enthaltend die Aminosäuresequenz SEQ. ID. NO. 6 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 70 % auf Amino- säureebene mit der Sequenz SEQ. ID. NO. 6 aufweist. Die Sequenz SEQ ID NO: 6 ist, wie vorstehend erwähnt, in Datenbanken nicht annotiert.The invention further relates to ketolases containing the amino acid sequence SEQ. ID. NO. 6 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70% on amino acid level with the sequence SEQ. ID. NO. 6 has. The sequence SEQ ID NO: 6, as mentioned above, is not annotated in databases.
In einer weiteren Ausführungsform betrifft die Erfindung Ketolasen, enthaltend die Ami- nosäuresequenz SEQ. ID. NO. 12 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 70 %, vorzugsweise mindestens 75%, besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindestens 90%, bevorzugter mindestens 95% auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 12 aufweist, mit der Maßgabe, dass die Aminosäuresequenzen SEQ ID NO: 6 nicht enthalten ist.In a further embodiment, the invention relates to ketolases containing the amino acid sequence SEQ. ID. NO. 12 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 12, with the proviso that the amino acid sequences SEQ ID NO: 6 is not included.
Ferner betrifft die Erfindung Ketolasen, enthaltend die Aminosäuresequenz SEQ. ID. NO. 49 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 50 %, vorzugs- weise mindestens 60%, besonders bevorzugt mindestens 70%, bevorzugter mindestens 80%, bevorzugter mindestens 90%, bevorzugter mindestens 95% auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 49 aufweist, mit der Maßgabe, dass die Aminosäuresequenzen SEQ ID NO: 47 nicht enthalten ist. Die Sequenz SEQ ID NO: 47 ist, wie vorstehend erwähnt, als putatives Protein in Datenbanken annotiert.The invention further relates to ketolases containing the amino acid sequence SEQ. ID. NO. 49 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 50%, preferably at least 60%, particularly preferably at least 70%, more preferably at least 80%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 49, with the proviso that the amino acid sequences SEQ ID NO: 47 is not included. The sequence SEQ ID NO: 47 is, as mentioned above, annotated as a putative protein in databases.
Die Erfindung betrifft ferner Nukleinsäuren, kodierend ein vorstehend beschriebenes Protein, mit der Maßgabe, dass die Nukleinsäure nicht die Sequenz SEQ ID NO: 5 enthält.The invention further relates to nucleic acids encoding a protein described above, with the proviso that the nucleic acid does not contain the sequence SEQ ID NO: 5.
Überraschenderweise wurde gefunden, dass ein Protein enthaltend die Aminosäuresequenz SEQ. ID. NO. 4 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 70 %, vorzugsweise mindestens 75%, besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindestens 90%, bevorzugter mindestens 95% auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 4 und die Eigenschaft einer Ketolase aufweist, eine Eigenschaft als Ketolase aufweist.Surprisingly, it was found that a protein containing the amino acid sequence SEQ. ID. NO. 4 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids and having an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 4 and has the property of a ketolase, has a property as a ketolase.
Die Erfindung betrifft daher auch die Verwendung eines Proteins, enthaltend die Aminosäuresequenz SEQ. ID. NO. 4 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 70 %, vorzugsweise mindestens 75%, besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindestens 90%, bevorzugter mindestens 95% auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 4 und die Eigenschaft einer Ketolase aufweist, als Ketolase.The invention therefore also relates to the use of a protein containing the amino acid sequence SEQ. ID. NO. 4 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the SEQ sequence. ID. NO. 4 and has the property of a ketolase as a ketolase.
Ferner wurde überraschenderweise gefunden, dass ein Protein enthaltend die Aminosäuresequenz SEQ. ID. NO. 6 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 65%, vorzugsweise mindestens 70 %, vorzugsweise mindestens 75%, besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindes- tens 90%, bevorzugter mindestens 95% auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 6 und die Eigenschaft einer Ketolase aufweist, eine Egenschaft als Ketolase aufweist.Furthermore, it was surprisingly found that a protein containing the amino acid sequence SEQ. ID. NO. 6 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 65%, preferably at least 70%, preferably at least 75%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level with the SEQ sequence. ID. NO. 6 and has the property of a ketolase, has a property as a ketolase.
Die Erfindung betrifft daher auch die Verwendung eines Proteins, enthaltend die Ami- nosäuresequenz SEQ. ID. NO. 6 oder eine von dieser Sequenz durch Substitution,The invention therefore also relates to the use of a protein containing the amino acid sequence SEQ. ID. NO. 6 or one of this sequence by substitution,
Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 65%, vorzugsweise mindestens 70 %, vorzugsweise mindestens 75%, x besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindestens 90%, bevorzugter mindestens 95%auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 6 und die Eigenschaft einer Ketolase aufweist, als Ketolase.Insertion or deletion of amino acid-derived sequence which has an identity of at least 65%, preferably at least 70%, preferably at least 75%, x particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90%, more preferably at least 95% at the amino acid level the sequence SEQ. ID. NO. 6 and has the property of a ketolase as a ketolase.
Ferner wurde überraschenderweise gefunden, dass ein Protein enthaltend die Aminosäuresequenz SEQ. ID. NO. 47 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 50%, vorzugsweise mindestens 60 %, vorzugsweise mindestens 70%, besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindestens 90%, bevorzugter mindestens 95% auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 47 und die Eigenschaft einer Ketolase aufweist, eine Egenschaft als Ketolase aufweist.Furthermore, it was surprisingly found that a protein containing the amino acid sequence SEQ. ID. NO. 47 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 50%, preferably at least 60%, preferably at least 70%, particularly preferably at least 80%, more preferably at least 85%, more preferably at least 90% , more preferably at least 95% at the amino acid level with the sequence SEQ. ID. NO. 47 and has the property of a ketolase, has a property as a ketolase.
Die Erfindung betrifft daher auch die Verwendung eines Proteins, enthaltend die Aminosäuresequenz SEQ. ID. NO. 47 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 50%, vorzugsweise mindestens 60 %, vorzugsweise mindestens 70%, besonders bevorzugt mindestens 80%, bevorzugter mindestens 85%, bevorzugter mindestens 90%, bevorzugter mindestens 95%auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 47 und die Eigenschaft einer Ketolase aufweist, als Ketolase.The invention therefore also relates to the use of a protein containing the amino acid sequence SEQ. ID. NO. 47 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 50%, preferably at least 60%, preferably at least 70%, particularly preferably at least 80%, more preferably at least 85% at least 90%, more preferably at least 95% at the amino acid level with the SEQ sequence. ID. NO. 47 and has the property of a ketolase as ketolase.
Im Vergleich zu den Verfahren des Standes der Technik, liefert das erfindungsgemäße Verfahren eine höhere Menge an Ketocarotinoide, insbesondere Astaxanthin mit einer geringeren Menge an hydroxylierten Nebenprodukten.In comparison to the processes of the prior art, the process according to the invention provides a higher amount of ketocarotenoids, in particular astaxanthin with a lower amount of hydroxylated by-products.
Die Erfindung wird durch die nun folgenden Beispiele erläutert, ist aber nicht auf diese beschränkt:The invention is illustrated by the following examples, but is not limited to these:
Allgemeine Experimentelle Bedingungen: Sequenzanalyse rekombinanter DNAGeneral experimental conditions: Sequence analysis of recombinant DNA
Die Sequenzierung rekombinanter DNA-Moleküle erfolgte mit einem Laserfluoreszenz- DNA-Sequenzierer der Firma Licor (Vertrieb durch MWG Biotech, Ebersbach) nach derThe sequencing of recombinant DNA molecules was carried out using a laser fluorescence DNA sequencer from Licor (distributed by MWG Biotech, Ebersbach) according to the
Methode von Sanger (Sanger et al., Proc. Natl. Acad. Sei. USA 74 (1977), 5463-5467).Sanger's method (Sanger et al., Proc. Natl. Acad. Sci. USA 74 (1977), 5463-5467).
Beispiel 1 :Example 1 :
Amplifikation einer DNA, die die gesamte Primärsequenz der NOST-Ketolase aus Nostoc sp. PCC 7120 codiertAmplification of a DNA that contains the entire primary sequence of the NOST ketolase from Nostoc sp. PCC 7120 coded
Die DNA, die für die NOST-Ketolase aus Nostoc sp. PCC 7120 kodiert, wurde mittels PCR aus Nostoc sp. PCC 7120 (Stamm der "Pasteur Culture Collection of Cyanobac- terium") amplifiziert.The DNA required for the NOST ketolase from Nostoc sp. PCC 7120 coded, was by means of PCR from Nostoc sp. PCC 7120 (strain of the "Pasteur Culture Collection of Cyanobacterium") amplified.
Für die Präparation von genomischer DNA aus einer Suspensionskultur von Nostoc sp. PCC 7120, die 1 Woche mit Dauerlicht und konstantem Schütteln (150 rpm) at 25°C in BG 77-Medium (1.5 g/l NaN03, 0.04 g/l K2P04x3H2O, 0.075 g/l MgSO4xH2O, 0.036 g/l CaCI2x2H2O, 0.006 g/l citric aeid, 0.006 g/l Ferric ammonium citrate, 0.001 g/l ED- TA disodium magnesium, 0.04 g/l Na2CO3, 1 ml trace metal mix A5+Co (2.86 g/lFor the preparation of genomic DNA from a suspension culture from Nostoc sp. PCC 7120, the 1 week with continuous light and constant shaking (150 rpm) at 25 ° C in BG 77 medium (1.5 g / l NaN03, 0.04 g / l K2P04x3H2O, 0.075 g / l MgSO4xH2O, 0.036 g / l CaCI2x2H2O, 0.006 g / l citric aeid, 0.006 g / l ferric ammonium citrate, 0.001 g / l EDTA disodium magnesium, 0.04 g / l Na2CO3, 1 ml trace metal mix A5 + Co (2.86 g / l
H3BO3, 1.81 g/l MnCI2x4H2o, 0.222 g/i ZnSO4x7H2o,0.39 g/l NaMoO4X2H2o, 0.079 g/l CuSO4x5H2O, 0.0494 g/l Co(NO3)2x6H2O) gewachsen war, wurden die Zellen durch Zentrifugation geerntet, in flüssigem Stickstoff eingefroren und im Mörser pulverisiert. Protokoll für DNA Isolation aus Nostoc PCC7120:H3BO3, 1.81 g / l MnCI2x4H2o, 0.222 g / i ZnSO4x7H2o, 0.39 g / l NaMoO4X2H2o, 0.079 g / l CuSO4x5H2O, 0.0494 g / l Co (NO3) 2x6H2O), the cells were harvested by centrifugation, nitrogen was harvested, by centrifugation and powdered in a mortar. Protocol for DNA isolation from Nostoc PCC7120:
Aus einer 10 ml Flüssigkultur wurden die Bakterienzellen durch 10minütige Zentrifuga- tion bei 8 000 rpm pelletiert. Anschließend wurden die Bakterienzellen in flüssigem Stickstoff mit einem Mörser zerstoßen und gemahlen. Das Zellmaterial wurde in 1 ml 10mM Tris HCI (pH 7.5) resuspendiert und in ein Eppendorf Reaktionsgefäß (2ml Volumen) überführt. Nach Zugabe von 100 μl Proteinase K (Konzentration: 20 mg/ml) wurde die Zellsuspension für 3 Stunden bei 37°C inkubiert. Anschließend wurde die Suspension mit 500 μl Phenol extrahiert. Nach δminütiger Zentrifugation bei 13 000 upm wurde die obere, wässrige Phase in ein neues 2 ml-Eppendorf Reaktionsgefäß überführt. Die Extraktion mit Phenol wurde 3mal wiederholt. Die DNA wurde durch Zugabe von 1/10 Volumen 3 M Natriumacetat (pH 5.2) und 0.6 Volumen Isopropanol gefällt und anschließend mit 70% Ethanol gewaschen. Das DNA-Pellet wurde bei Raumtemperatur getrocknet, in 25 μl Wasser aufgenommen und unter Erhitzung auf 65°C gelöst.The bacterial cells were pelleted from a 10 ml liquid culture by centrifugation at 8,000 rpm for 10 minutes. The bacterial cells were then crushed and ground in liquid nitrogen using a mortar. The cell material was resuspended in 1 ml of 10 mM Tris HCl (pH 7.5) and transferred to an Eppendorf reaction vessel (2 ml volume). After adding 100 μl Proteinase K (concentration: 20 mg / ml), the cell suspension was incubated for 3 hours at 37 ° C. The suspension was then extracted with 500 μl of phenol. After centrifugation at 13,000 rpm for δ minutes, the upper, aqueous phase was transferred to a new 2 ml Eppendorf reaction vessel. The extraction with phenol was repeated 3 times. The DNA was precipitated by adding 1/10 volume of 3 M sodium acetate (pH 5.2) and 0.6 volume of isopropanol and then washed with 70% ethanol. The DNA pellet was dried at room temperature, taken up in 25 μl of water and dissolved with heating to 65 ° C.
Die Nukleinsäure, kodierend eine Ketolase aus Nostoc PCC 7120, wurde mittels "po- lymerase chain reaction" (PCR) aus Nostoc sp. PCC 7120 unter Verwendung eines sense-spezifischen Primers (NOSTF, SEQ ID No. 19) und eines antisense- spezifischen Primers (NOSTG SEQ ID No. 20) amplifiziert.The nucleic acid encoding a ketolase from Nostoc PCC 7120 was determined by means of a "polymerase chain reaction" (PCR) from Nostoc sp. PCC 7120 was amplified using a sense-specific primer (NOSTF, SEQ ID No. 19) and an antisense-specific primer (NOSTG SEQ ID No. 20).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA, die für ein Ketolase Protein bestehend aus der gesamten Primärsequenz kodiert, erfolgte in einem 50 ul Reaktionsansatz, in dem enthalten war:The PCR for the amplification of the DNA, which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 μl reaction mixture which contained:
1 ul einer Nostoc sp. PCC 7120 DNA (hergestellt wie oben beschrieben) 0.25 mM dNTPs - 0.2 mM NOSTF (SEQ ID No. 19) 0.2 mM NOSTG (SEQ ID No. 20) 5 ul 10X PCR-Puffer (TAKARA) 0.25 ul R Taq Polymerase (TAKARA) 25.8 ul Aq. Dest.1 ul of a Nostoc sp. PCC 7120 DNA (prepared as described above) 0.25 mM dNTPs - 0.2 mM NOSTF (SEQ ID No. 19) 0.2 mM NOSTG (SEQ ID No. 20) 5 ul 10X PCR buffer (TAKARA) 0.25 ul R Taq polymerase (TAKARA) 25.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt: 1X 94°C 2 Minuten 35X 94°C 1 Minute 55°C 1 Minuten 72°C 3 MinutenThe PCR was carried out under the following cycle conditions: 1X 94 ° C 2 minutes 35X 94 ° C 1 minute 55 ° C 1 minutes 72 ° C 3 minutes
1X 72°C 10 Minuten1X 72 ° C 10 minutes
Die PCR-Amplifikation mit SEQ ID No. 19 und SEQ ID No. 20 resultierte in einem 805 Bp-Fragment, das für ein Protein bestehend aus der gesamten Primärsequenz kodiert (SEQ ID No. 21). Unter Verwendung von Standardmethoden wurde das Amplifikat in den PCR-Klonierungsvektor pGEM-T (Promega) kloniert und der Klon pNOSTF-G erhalten.PCR amplification with SEQ ID No. 19 and SEQ ID No. 20 resulted in an 805 bp fragment that codes for a protein consisting of the entire primary sequence (SEQ ID No. 21). Using standard methods, the amplificate was cloned into the PCR cloning vector pGEM-T (Promega) and the clone pNOSTF-G was obtained.
Sequenzierung des Klons pNOSTF-G mit dem M13F- und dem M13R-Primer bestätig- te eine Sequenz, weiche mit der DNA-Sequenz von 88,886-89,662 des Datenbankeintrages AP003592 identisch ist. Diese Nukleotidsequenz wurde in einem unabhängigem Amplifikationsexperiment reproduziert und repräsentiert somit die Nukleotidsequenz im verwendeten Nostoc sp. PCC 7120.Sequencing of the clone pNOSTF-G with the M13F and M13R primers confirmed a sequence which is identical to the DNA sequence from 88.886-89.662 of the database entry AP003592. This nucleotide sequence was reproduced in an independent amplification experiment and thus represents the nucleotide sequence in the Nostoc sp. PCC 7120.
Dieser Klon pNOSTF-G wurde daher für die Klonierung in den Expressionsvektor pJIT117 (Guerineau et al. i g88, Nucl. Acids Res. 16: 11380) verwendet. Die Klonierung erfolgte durch Isolierung des 799 Bp Sphl-Fragmentes aus pNOSTF-G und Ligie- rung in den Sphl geschnittenen Vektor pJIT117. Der Klon, der die Ketolase von Nostoc sp. PCC 7120 in der korrekten Orientierung als N-terminale translationale Fusion mit dem rbcS Transitpeptid enthält, heisst pJNOST.This clone pNOSTF-G was therefore used for the cloning into the expression vector pJIT117 (Guerineau et al. I g88, Nucl. Acids Res. 16: 11380). Cloning was carried out by isolating the 799 bp Sphl fragment from pNOSTF-G and ligation into the Sphl cut vector pJIT117. The clone that is the ketolase from Nostoc sp. PCC 7120, in the correct orientation as an N-terminal translational fusion with the rbcS transit peptide, is called pJNOST.
Beispiel 2:Example 2:
Konstruktion des Plasmides pMCL-CrtYlBZ/idi/gps für die Synthese von Zeaxanthin inConstruction of the plasmid pMCL-CrtYlBZ / idi / gps for the synthesis of zeaxanthin in
E. coliE. coli
Die Konstruktion von pMCL-CrtYlBZ/idi/gps erfolgte in drei Schritten über die Zwischenstufen pMCL-CrtYlBZ und pMCL-CrtYlBZ/idi. Als Vektor wurde das mit high- copy-number Vektoren kompatible Plasmid pMCL200 verwendet (Nakano, Y., Yoshida, Y., Yamashita, Y. und Koga, T.; Construction of a series of pACYC-derived plasmid vectors; Gene 162 (1995), 157-158). Beispiel 2.1. : Konstruktion von pMCL-CrtYlBZPMCL-CrtYlBZ / idi / gps was constructed in three steps using the intermediate stages pMCL-CrtYlBZ and pMCL-CrtYlBZ / idi. The plasmid pMCL200 compatible with high-copy-number vectors was used as the vector (Nakano, Y., Yoshida, Y., Yamashita, Y. and Koga, T .; Construction of a series of pACYC-derived plasmid vectors; Gene 162 ( 1995), 157-158). Example 2.1. : Construction of pMCL-CrtYlBZ
Die Biosynthesegene crtY, crtB, crtl und crtZ entstammen dem Bakterium Erwinia ure- dovora und wurden mittels PCR amplifiziert. Genomische DNA von Erwinia uredovora (DSM 30080) wurde von der Deutschen Sammlung von Mikroorganismen und Zellkutu- ren (DSMZ, Braunschweig) innerhalb eines Service-Dienstes präpariert. Die PCR- Reaktion wurde entsprechend den Angaben des Herstellers durchgeführt (Röche, Long Template PCR: Procedure for amplification of 5-20 kb targets with the expand long template PCR System). Die PCR-Bedingungen für die Amplifikation des Biosynthesec- lusters von Erwinia uredovora waren die folgenden:The biosynthetic genes crtY, crtB, crtl and crtZ come from the bacterium Erwinia ure- dovora and were amplified by PCR. Erwinia uredovora genomic DNA (DSM 30080) was prepared by the German Collection of Microorganisms and Cell Culture (DSMZ, Braunschweig) as part of a service. The PCR reaction was carried out according to the manufacturer's instructions (Röche, Long Template PCR: Procedure for amplification of 5-20 kb targets with the expand long template PCR system). The PCR conditions for the amplification of the Erwinia uredovora biosynthesis cluster were as follows:
Master Mix 1 :Master Mix 1:
1.75 ul dNTPs (Endkonzentration 350 μM) 0.3 μM Primer Crt1 (SEQ ID No. 22) - 0.3 μM Primer Crt2 (SEQ ID No. 23)1.75 ul dNTPs (final concentration 350 μM) 0.3 μM Primer Crt1 (SEQ ID No. 22) - 0.3 μM Primer Crt2 (SEQ ID No. 23)
250 - 500 ng genomische DNA von DSM 30080 Aq. Dest. bis zu einem Gesamtvolumen von 50 μl x250-500ng genomic DNA from DSM 30080 Aq. Dest. Up to a total volume of 50 ul x
Master Mix 2:Master Mix 2:
5 ul 10x PCR Puffer 1 (Endkonzentration 1x, mit 1.75 mM Mg2+) 10x PCR Puffer 2 (Endkonzentration 1 x, mit 2.25 mM Mg2+) 10x PCR Puffer 3 (Endkonzentration 1 x, mit 2.25 mM Mg2+) 0.75 ul Expand Long Template Enzyme Mix (Endkonzentration 2.6 Units) Aq. Dest. bis zu einem Gesamtvolumen von 50 μl5 ul 10x PCR buffer 1 (final concentration 1x, with 1.75 mM Mg2 +) 10x PCR buffer 2 (final concentration 1 x, with 2.25 mM Mg2 +) 10x PCR buffer 3 (final concentration 1 x, with 2.25 mM Mg2 +) 0.75 ul Expand Long Template Enzyme Mix (Final concentration 2.6 units) Aq. Dest. Up to a total volume of 50 μl
Die beiden Ansätze "Master Mix 1" und "Master Mix 2" wurden zusammenpipetiert. Die PCR wurde in einem Gesamtvolumen von 50 ul unter folgenden Zyklusbedingungen durchgeführt:The two approaches "Master Mix 1" and "Master Mix 2" were pipetted together. The PCR was carried out in a total volume of 50 μl under the following cycle conditions:
1X 94°C 2 Minuten 30X 94°C 30 Sekunden 58°C 1 Minute 68°C 4 Minuten 1 X 72°C 10 Minuten Die PCR-Amplifikation mit SEQ ID No. 22 und SEQ ID No. 23 resultierte in einem Fragment (SEQ ID NO: 24), das für die Gene CrtY (Protein: SEQ ID NO: 25), CrtI (Protein: SEQ ID NO: 26), crtB (Protein: SEQ ID NO: 27) und CrtZ(iDNA) kodiert. Unter Verwendung von Standardmethoden wurde das Amplifikat in den PCR- Klonierungsvektor pCR2.1 (Invitrogen) kloniert und der Klon pCR2.1-CrtYIBZ erhalten.1X 94 ° C 2 minutes 30X 94 ° C 30 seconds 58 ° C 1 minute 68 ° C 4 minutes 1 X 72 ° C 10 minutes PCR amplification with SEQ ID No. 22 and SEQ ID No. 23 resulted in a fragment (SEQ ID NO: 24), which for the genes CrtY (protein: SEQ ID NO: 25), CrtI (protein: SEQ ID NO: 26), crtB (protein: SEQ ID NO: 27) and CrtZ (iDNA) encoded. Using standard methods, the amplificate was cloned into the PCR cloning vector pCR2.1 (Invitrogen) and the clone pCR2.1-CrtYIBZ was obtained.
Das Plasmid pCR2.1-CrtYIBZ wurde Sall und Hindill geschnitten, das resultierende Sall/Hindlll-Fragment isoliert und durch Ligierung in den Sall/Hindlll geschnittenen Vektor pMCL200 transferiert. Das in pMCL 200 klonierte Sall/Hindlll Fragment aus pCR2.1-CrtYIBZ ist 4624 Bp lang, kodiert für die Gene CrtY, CrtI, crtB und CrtZ und entspricht der Sequenz von Position 2295 bis 6918 in D90087 (SEQ ID No. 24). Der resultierende Klon heisst pMCL-CrtYlBZ.The plasmid pCR2.1-CrtYIBZ was cut Sall and Hindill, the resulting Sall / Hindlll fragment isolated and transferred by ligation into the Sall / Hindlll cut vector pMCL200. The Sall / Hindlll fragment from pCR2.1-CrtYIBZ cloned in pMCL 200 is 4624 bp long, codes for the genes CrtY, CrtI, crtB and CrtZ and corresponds to the sequence from positions 2295 to 6918 in D90087 (SEQ ID No. 24). The resulting clone is called pMCL-CrtYlBZ.
Beispiel 2.2.: Konstruktion von pMCL-CrtYlBZ/idi Das Gen /d/' (lsopentenyldiphosphat-lsomerase; IPP-lsomerase) wurde aus E coli mittels PCR amplifiziert. Die Nukleinsäure, kodierend das gesamte /cf Gen mit idi- Promotor und Ribosomenbindestelle, wurde aus E. coli mittels "polymerase chain reac- tion" (PCR) unter Verwendung eines sense-spezifischen Primers (5'-idi SEQ ID No. 28) und eines antisense-spezifischen Primers (3'-idi SEQ ID No.29) amplifiziert.Example 2.2 .: Construction of pMCL-CrtYlBZ / idi The gene / d / ' (isopentenyl diphosphate isomerase; IPP isomerase) was amplified from E coli by means of PCR. The nucleic acid encoding the entire / cf gene with idi promoter and ribosome binding site was extracted from E. coli by means of "polymerase chain reaction" (PCR) using a sense-specific primer (5'-idi SEQ ID No. 28) and an antisense-specific primer (3'-idi SEQ ID No.29).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA erfolgte in einem 50 μl Reaktionsansatz, in dem enthalten war:The PCR for the amplification of the DNA was carried out in a 50 μl reaction mixture, which contained:
1 ul einer E. coli TOP10- Suspension 0.25 mM dNTPs 0.2 mM 5'-idi (SEQ ID No. 28) 0.2 mM 3'-idi (SEQ ID No. 29) - 5 ul 10X PCR-Puffer (TAKARA)1 ul of an E. coli TOP10 suspension 0.25 mM dNTPs 0.2 mM 5'-idi (SEQ ID No. 28) 0.2 mM 3'-idi (SEQ ID No. 29) - 5 ul 10X PCR buffer (TAKARA)
0.25 ul R Taq Polymerase (TAKARA) 28.8 ul Aq. Dest0.25 ul R Taq Polymerase (TAKARA) 28.8 ul Aq. least
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt: 1X 94°C 2 Minuten 20X 94°C 1 MinuteThe PCR was carried out under the following cycle conditions: 1X 94 ° C 2 minutes 20X 94 ° C 1 minute
62 °C1 Minute62 ° C1 minute
72°C 1 Minute 1 X 72°C 10 Minuten72 ° C 1 minute 1 X 72 ° C 10 minutes
Die PCR-Amplifikation mit SEQ ID No. 28 und SEQ ID No. 29 resultierte in einem 679 Bp-Fragment, das für ein Protein bestehend aus der gesamten Primärsequenz kodiert (SEQ ID No. 30). Unter Verwendung von Standardmethoden wurde das Amplifikat in den PCR-Klonierungsvektor pCR2.1 (Invitrogen) kloniert und der Klon pCR2.1-idi erhalten.PCR amplification with SEQ ID No. 28 and SEQ ID No. 29 resulted in a 679 bp fragment coding for a protein consisting of the entire primary sequence (SEQ ID No. 30). Using standard methods, the amplificate was cloned into the PCR cloning vector pCR2.1 (Invitrogen) and the clone pCR2.1-idi was obtained.
Sequenzierung des Klons pCR2.1-idi bestätigte eine Sequenz, die sich nicht von der publizierten Sequenz AE000372 in Position 8774 bis Position 9440 unterscheidet. Die- se Region umfaßt die Promotor-Region, die potentielle Ribosomenbindestelle und den gesamten "open reading frame" für die IPP-lsomerase. Das in pCR2.1-idi klonierte Fragment hat durch das Einfügen einer Xhol-Schnittstelle am 5'-Ende und eine Sall- Schnittstelle am 3'-Ende des -Gens eine Gesamtlänge von 679 Bp.Sequencing of the clone pCR2.1-idi confirmed a sequence that does not differ from the published sequence AE000372 in position 8774 to position 9440. This region comprises the promoter region, the potential ribosome binding site and the entire "open reading frame" for the IPP isomerase. The fragment cloned into pCR2.1-idi has a total length of 679 bp by inserting an Xhol site at the 5 'end and a SalI site at the 3' end of the gene.
Dieser Klon wurde daher für die Klonierung des /oY-Gens in den Vektor pMCL-CrtYlBZ verwendet. Die Klonierung erfolgte durch Isolierung des Xhol/Sall-Fragmentes aus pCR2.1-idi und Ligierung in den Xhol/Sall geschnittenen Vektor pMCL-CrtYlBZ. Der resultierende Klon heisst pMCL-CrtYlBZ/idi.This clone was therefore used for the cloning of the / oY gene in the vector pMCL-CrtYlBZ. The cloning was carried out by isolating the Xhol / Sall fragment from pCR2.1-idi and ligating into the Xhol / Sall cut vector pMCL-CrtYlBZ. The resulting clone is called pMCL-CrtYlBZ / idi.
Beispiel 2.3.: Konstruktion von pMCL-CrtYlBZ/idi/gpsExample 2.3 .: Construction of pMCL-CrtYlBZ / idi / gps
Das Gen gps (Geranylgeranylpyrophosphat-Synthase; ; GGPP-Synthase) wurde aus Archaeoglobus fulgidus mittels PCR amplifiziert. Die Nukleinsäure, kodierend gps aus Archaeoglobus fulgidus, wurde mittels "polymerase chain reaction" (PCR) unter Verwendung eines sense-spezifischen Primers (5'-gps SEQ ID No. 32) und eines anti- sense-spezifischen Primers (3'-gps SEQ ID No. 33) amplifiziert.The gene gps (geranylgeranyl pyrophosphate synthase; GGPP synthase) was amplified from Archaeoglobus fulgidus by means of PCR. The nucleic acid, encoding gps from Archaeoglobus fulgidus, was determined by means of "polymerase chain reaction" (PCR) using a sense-specific primer (5'-gps SEQ ID No. 32) and an anti-sense-specific primer (3'-gps SEQ ID No. 33).
Die DNA von Archaeoglobus fulgidus wurde von der Deutschen Sammlung von Mikroorganismen und Zellkulturen (DSMZ, Braunschweig) innerhalb eines Service-Dienstes präpariert. Die PCR-Bedingungen waren die folgenden: Die PCR zur Amplifikation der DNA, die für ein GGPP-Synthase Protein bestehend aus der gesamten Primärsequenz kodiert, erfolgte in einem 50 μl Reaktionsansatz, in dem enthalten war:The DNA of Archaeoglobus fulgidus was prepared by the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig) as part of a service. The PCR conditions were as follows: The PCR for the amplification of the DNA, which codes for a GGPP synthase protein consisting of the entire primary sequence, was carried out in a 50 μl reaction mixture which contained:
- 1 ul einer Archaeoglobus fulgidus-DNA 0.25 mM dNTPs 0.2 mM 5'-gps (SEQ ID No. 32) 0.2 mM 3'-gps (SEQ ID No. 33) 5 ul 10X PCR-Puffer (TAKARA) - 0.25 ul R Taq Polymerase (TAKARA) 28.8 ul Aq. Dest.- 1 µl of Archaeoglobus fulgidus DNA 0.25 mM dNTPs 0.2 mM 5'-gps (SEQ ID No. 32) 0.2 mM 3'-gps (SEQ ID No. 33) 5 µl 10X PCR buffer (TAKARA) - 0.25 µl R Taq Polymerase (TAKARA) 28.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94°C 2 Minuten 20X 94°C 1 Minute1X 94 ° C 2 minutes 20X 94 ° C 1 minute
56°C 1 Minute56 ° C for 1 minute
72°C 1 Minute 1 X 72°C 10 Minuten72 ° C 1 minute 1 X 72 ° C 10 minutes
Das mittels PCR und den Primern SEQ ID No. 32 und SEQ ID No. 33 amplifizierte DNA-Fragment wurde mit an sich bekannten Methoden aus dem Agarosegel eluiert und mit den Restriktionsenzymen Ncol und Hindill geschnitten. Daraus resultiert ein 962 Bp-Fragment, das für ein Protein bestehend aus der gesamten Primärsequenz kodiert (SEQ ID No. 34). Unter Verwendung von Standardmethoden wurde das Ncol/Hindlll geschnittene Amplifikat in den Vektor pCB97-30 kloniert und der Klon pCB-gps erhalten.Using PCR and the primers SEQ ID No. 32 and SEQ ID No. 33 amplified DNA fragments were eluted from the agarose gel using methods known per se and cut with the restriction enzymes Ncol and Hindill. This results in a 962 bp fragment which codes for a protein consisting of the entire primary sequence (SEQ ID No. 34). Using standard methods, the Ncol / HindIII cut amplificate was cloned into the vector pCB97-30 and the clone pCB-gps was obtained.
Sequenzierung des Klons pCB-gps bestätigte eine Sequenz für die GGPP-Synthase aus A. fulgidus, die sich von der publizierten Sequenz AF120272 in einem Nukleotid unterscheidet. Durch das Einfügen einer Ncol-Schnittstelle im gps-Gen wurde das zweite Kodon der GGPP-Synthase verändert. In der publizierten Sequenz AF120272 kodiert CTG (Position 4-6) für Leucin. Durch die Amplifikation mit den beiden Primern SEQ ID No. 32 und SEQ ID No. 33 wurde dieses zweite Kodon in GTG verändert, wel- ches für Valin kodiert. Der Klon pCB-gps wurde daher für die Klonierung des gps-Gens in den Vektor pMCL- CrtYlBZ/idi verwendet. Die Klonierung erfolgte durch Isolierung des Kpnl/Xhol- Fragmentes aus pCB-gps und Ligierung in den Kpnl und Xhol geschnittenen Vektor pMCL-CrtYlBZ/idi. Das Monierte Kpnl/Xhol-Fragment (SEQ ID No. 34) trägt den Prm16-Promotor zusammen mit einer minimalen 5'-UTR-Sequenz von rbcL, den ersten 6 Kodons von rbcL, die die GGPP-Synthase N-terminal verlängern, und 3' vom gps-Gen die psbA-Sequenz. Der N-Terminus der GGPP-Synthase hat somit anstelle der natürlichen Aminosäure-Abfolge mit Met-Leu-Lys-Glu (Aminosäure 1 bis 4 aus AF120272) die veränderte Aminosäure-Abfolge Met-Thr-Pro-Gln-Thr-Ala-Met-Val-Lys- GIu. Daraus resultiert, dass die rekombinante GGPP-Synthase, beginnend mit Lys in Position 3 (in AF120272) identisch ist und keine weiteren Änderungen in der Aminosäuresequenz aufweist. Die rbcL- und psbA-Sequenzen wurden gemäß einer Referenz nach Eibl et al. (Plant J. 1 . (i 99), 1-13) verwendet. Der resultierende Klon heisst pMCL-CrtYlBZ/idi/gps.Sequencing of the clone pCB-gps confirmed a sequence for the GGPP synthase from A. fulgidus, which differs from the published sequence AF120272 in one nucleotide. The second codon of the GGPP synthase was changed by inserting an Ncol site in the gps gene. In the published sequence AF120272, CTG (position 4-6) codes for leucine. By amplification with the two primers SEQ ID No. 32 and SEQ ID No. In 33 this second codon was changed to GTG, which codes for valine. The clone pCB-gps was therefore used for the cloning of the gps gene into the vector pMCL-CrtYlBZ / idi. The cloning was carried out by isolating the Kpnl / Xhol fragment from pCB-gps and ligation into the Kpnl and Xhol cut vector pMCL-CrtYlBZ / idi. The cloned Kpnl / Xhol fragment (SEQ ID No. 34) carries the Prm16 promoter together with a minimal 5 'UTR sequence of rbcL, the first 6 codons of rbcL, which extend the GGPP synthase N-terminally, and 3 'from the gps gene the psbA sequence. The N-terminus of the GGPP synthase thus has the changed amino acid sequence Met-Thr-Pro-Gln-Thr-Ala-Met instead of the natural amino acid sequence with Met-Leu-Lys-Glu (amino acid 1 to 4 from AF120272) -Val-Lys- GIu. As a result, the recombinant GGPP synthase, starting with Lys in position 3 (in AF120272), is identical and has no further changes in the amino acid sequence. The rbcL and psbA sequences were based on a reference according to Eibl et al. (Plant J. 1. (I 99), 1-13). The resulting clone is called pMCL-CrtYlBZ / idi / gps.
Beispiel 3:Example 3:
Biotransformation von Zeaxanthin in rekombinanten E. coli-StämmenBiotransformation of zeaxanthin in recombinant E. coli strains
XX
Zur Zeaxanthin-Biotransformation wurden rekombinante E. co//-Stämme hergestellt, welche durch heterologe Komplementation zur Zeaxanthin-Produktion befähigt sind. Stämme von E. coli TOP10 wurden als Wirtszellen für die Komplementations- Experimente mit den Plasmiden pNOSTF-G und pMCL-CrtYlBZ/idi/gps verwendet.For zeaxanthin biotransformation, recombinant E. co // strains were produced which are capable of producing zeaxanthin by heterologous complementation. Strains of E. coli TOP10 were used as host cells for the complementation experiments with the plasmids pNOSTF-G and pMCL-CrtYlBZ / idi / gps.
Um E. co//-Stämme herzustellen, die die Synthese von Zeaxanthin in hoher Konzentra- tion ermöglichen, wurde das Plasmid pMCL-CrtYlBZ/idi/gps konstruiert. Das Plasmid trägt die Bioynthesegene crtY, crtB, crtl und crtY von Erwinia uredovora, das Gen gps (für Geranylgeranylpyrophoshat-Synthastase) aus Archaeoglobus fulgidus und das Gen /^/(Isopentenyldiphosphat-Isomerase) aus E. coli. Mit diesem Konstrukt wurden limitierende Schritte für eine hohe Akkumulation von Carotinoiden und deren bio- synthtischen Vorstufen beseitigt. Dies wurde zuvor von Wang et al. in ähnlicher Weise mit mehreren Plasmiden beschrieben (Wang, C.-W., Oh, M.-K. und Liao, J.C.; Engi- neered isoprenoid pathway enhances astaxanthin production in Escherichia coli, Bio- technology and Bioengineering 62 (1999), 235-241). Kulturen von E.coli TOP 10 wurden in ah sich bekannter Weise mit den beiden Plasmiden pNOSTF-G und pMCL-CrtYlBZ/idi/gps transformiert und in LB-Medium bei 30°C bzw. 37°C über Nacht kultiviert. Ampicillin (50 μg/ml), Chloramphenicol (50 μg/ml) und Isopropyl-ß-thiogalactosid (1 mmol) wurden in an sich üblicher Weise ebenfalls über Nacht zugegeben.The plasmid pMCL-CrtYlBZ / idi / gps was constructed in order to produce E. co // strains which enable the synthesis of zeaxanthin in high concentrations. The plasmid carries the genes crtY, crtB, crtl and crtY from Erwinia uredovora, the gene gps (for geranylgeranyl pyrophoshate synthastase) from Archaeoglobus fulgidus and the gene / ^ / (isopentenyl diphosphate isomerase) from E. coli. Limiting steps for a high accumulation of carotenoids and their biosynthetic precursors were eliminated with this construct. This was previously reported by Wang et al. similarly described with several plasmids (Wang, C.-W., Oh, M.-K. and Liao, JC; engineered isoprenoid pathway enhancements astaxanthin production in Escherichia coli, Biotechnology and Bioengineering 62 (1999), 235-241). Cultures of E. coli TOP 10 were transformed in a known manner with the two plasmids pNOSTF-G and pMCL-CrtYlBZ / idi / gps and cultured in LB medium at 30 ° C. and 37 ° C. overnight. Ampicillin (50 μg / ml), chloramphenicol (50 μg / ml) and isopropyl-β-thiogalactoside (1 mmol) were also added overnight in a conventional manner.
Zur Isolierung der Carotinoide aus den rekombinanten Stämmen wurden die Zellen mit Aceton extrahiert, das organische Lösungsmittel zur Trockne eingedampft und die Carotinoide mittels HPLC über eine C30-Säule aufgetrennt. Folgende Verfahrensbedin- gungen wurden eingestellt.To isolate the carotenoids from the recombinant strains, the cells were extracted with acetone, the organic solvent was evaporated to dryness and the carotenoids were separated by means of HPLC on a C30 column. The following procedural conditions were set.
Trennsäule: Prontosil C30-Säule, 250 x 4,6 mm, (Bischoff, Leonberg)Separation column: Prontosil C30 column, 250 x 4.6 mm, (Bischoff, Leonberg)
Flussrate: 1.0 ml/minFlow rate: 1.0 ml / min
Eluenten: Laufmittel A - 100% MethanolEluents: mobile phase A - 100% methanol
Laufmittel B - 80% Methanol, 0.2% AmmoniumacetatMobile solvent B - 80% methanol, 0.2% ammonium acetate
Laufmittel C - 100% t-Butyl-methyletherMobile phase C - 100% t-butyl methyl ether
Detektion: 300 - 500 nmDetection: 300 - 500 nm
Die Spektren wurden direkt aus den Elutionspeaks unter Verwendung eines Photodio- denarraydetektors bestimmt. Die isolierten Substanzen wurden über ihre Absorptions- spektren und ihre Retentionszeiten im Vergleich zu Standardproben identifiziert.The spectra were determined directly from the elution peaks using a photodiode array detector. The isolated substances were identified by their absorption spectra and their retention times in comparison to standard samples.
Abbildung 1 zeigt die chromatographische Analyse einer Probe erhalten aus einem mit pNOSTF-G und pMCL-CrtYlBZ/idi/gps transformierten E. co//-Stamm. Es zeigt sich, daß dieser Stamm aufgrund der heterologen Komplementation verschiedene Ketocarotinoide synthetisieren kann. Mit zunehmender Retentionszeit werden Astaxanthin (Peak 1), Adonirubin (Peak 2) und Canthaxanthin (Peak 3) eluiert.Figure 1 shows the chromatographic analysis of a sample obtained from an E. co // strain transformed with pNOSTF-G and pMCL-CrtYlBZ / idi / gps. It appears, that this strain can synthesize various ketocarotenoids due to the heterologous complementation. With increasing retention time, astaxanthin (peak 1), adonirubin (peak 2) and canthaxanthin (peak 3) are eluted.
Beispiel 3.1Example 3.1
VergleichsbeispielComparative example
Analog zu den vorhergehenden Beispielen wurde als Vergleichsbeispiel ein E.coli- Stamm hergestellt, der eine Ketolase aus Haematococcus pluvialis Flotow em. Wille exprimiert. Dazu wurde die cDNA die für die gesamte Primärsequenz der Ketolase aus Haematococcus pluvialis Flotow em. Wille codiert amplifiziert und gemäß Beispiel 1 in den gleichen Expressionsvektor kloniert.Analogously to the previous examples, a E. coli strain was produced as a comparative example, which contains a ketolase from Haematococcus pluvialis Flotow em. Will expressed. For this purpose, the cDNA was used for the entire primary sequence of the ketolase from Haematococcus pluvialis Flotow em. Wille coded amplified and cloned into the same expression vector according to Example 1.
Die cDNA, die für die Ketolase aus Haematococcus pluvialis codiert, wurde mittels PCR aus Haematococcus pluvialis (Stamm 192.80 der "Sammlung von Algenkulturen der Universität Göttingen")Suspensionskultur amplifiziert. Für die Präparation von To- tal-RNA aus einer Suspensionskultur von Haematococcus pluvialis (Stamm 192.80), die 2 Wochen mit indirektem Tageslicht bei Raumtemperatur in Haematococcus- Medium (1.2 g/l Natriumacetat, 2 g/l Hefeextrakt, 0.2 g/l MgCI2x6H2O, 0.02 CaCI2x2H2O; pH 6.8; nach Autoklavieren Zugabe von 400 mg/l L-Asparagin, 10 mg/l FeSO4xH2O) gewachsen war, wurden die Zellen geerntet, in flüssigem Stickstoff eingefroren und im Mörser pulverisiert. Anschließend wurden 100 mg der gefrorenen, pulverisierten Algenzellen in ein Reaktionsgefäß überführt und in 0.8 ml Trizol-Puffer (LifeTechnolo- gies) aufgenommen. Die Suspension wurde mit 0.2 ml Chloroform extrahiert. Nach 15 minütiger Zentrifugation bei 12000 g wurde der wässrige Überstand abgenommen und in ein neues Reaktionsgefäß überführt und mit einem Volumen Ethanol extrahiert. Die RNA wurde mit einem Volumen Isopropanol gefällt, mit 75% Ethanol gewaschen und das Pellet in DEPC Wasser (über Nacht Inkubation von Wasser mit 1/1000 Volumen Diethylpyrocarbonat bei Raumtemperatur, anschließend autoklaviert) gelöst. Die RNA- Konzentration wurde photometrisch bestimmt.The cDNA coding for the ketolase from Haematococcus pluvialis was amplified by means of PCR from Haematococcus pluvialis (strain 192.80 from the "Collection of algal cultures of the University of Göttingen") suspension culture. For the preparation of total RNA from a suspension culture of Haematococcus pluvialis (strain 192.80), which with indirect daylight at room temperature for 2 weeks in Haematococcus medium (1.2 g / l sodium acetate, 2 g / l yeast extract, 0.2 g / l MgCI2x6H2O , 0.02 CaCI2x2H2O; pH 6.8; after autoclaving 400 mg / l L-Asparagine, 10 mg / l FeSO4xH2O) had been grown, the cells were harvested, frozen in liquid nitrogen and pulverized in a mortar. Then 100 mg of the frozen, pulverized algae cells were transferred to a reaction vessel and taken up in 0.8 ml of Trizol buffer (Life Technologies). The suspension was extracted with 0.2 ml chloroform. After centrifugation at 12,000 g for 15 minutes, the aqueous supernatant was removed and transferred to a new reaction vessel and extracted with a volume of ethanol. The RNA was precipitated with a volume of isopropanol, washed with 75% ethanol and the pellet dissolved in DEPC water (overnight incubation of water with 1/1000 volume of diethyl pyrocarbonate at room temperature, then autoclaved). The RNA concentration was determined photometrically.
Für die cDNA-Synthese wurden 2.5 ug Gesamt-RNA für 10 min bei 60_C denaturiert, für 2 min auf Eis abgekühlt und mittels eines cDNA-Kits (Ready-to-go-you-prime- beads, Pharmacia Biotech) nach Herstellerangaben unter Verwendung eines antisense spezifischen Primers PR1 (gcaagctcga cagctacaaa cc) in cDNA umgeschrieben. Die Nukleinsäure codierend eine Ketolase aus Haematococcus pluvialis (Stamm 192.80) wurde mittels polymerase chain reaction (PCR) aus Haematococcus pluvialis unter Verwendung eines sense spezifischen Primers PR2 (gaagcatgca gctagcagcg acag) und eines antisense spezifischen Primers PR1 amplifiziert.For the cDNA synthesis, 2.5 μg of total RNA were denatured for 10 min at 60_C, cooled on ice for 2 min and used using a cDNA kit (ready-to-go-you-prime-beads, Pharmacia Biotech) according to the manufacturer's instructions of an antisense-specific primer PR1 (gcaagctcga cagctacaaa cc) was rewritten in cDNA. The nucleic acid encoding a kematolase from Haematococcus pluvialis (strain 192.80) was amplified by means of a polymerase chain reaction (PCR) from Haematococcus pluvialis using a sense-specific primer PR2 (gaagcatgca gctagcagcg acag) and an antisense-specific primer PR1.
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der cDNA, die für ein Ketolase Protein bestehend aus der gesamten Primärsequenz codiert, erfolgte in einem 50 ml Reaktionsansatz, in dem enthalten war:The PCR for the amplification of the cDNA, which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 ml reaction mixture which contained:
4 ml einer Haematococcus pluvialis cDNA (hergestellt wie oben beschrieben). 0.25 mM dNTPs4 ml of a Haematococcus pluvialis cDNA (prepared as described above). 0.25 mM dNTPs
0.2 mM PR1 - 0.2 mM PR20.2 mM PR1 - 0.2 mM PR2
5 ml 10X PCR-Puffer (TAKARA) 0.25 ml R Taq Polymerase (TAKARA)5 ml 10X PCR buffer (TAKARA) 0.25 ml R Taq Polymerase (TAKARA)
25.8 ml Aq. Dest. x 25.8 ml Aq. Dest. X
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94_C 2 Minuten 35X 94_C 1 Minute1X 94_C 2 minutes 35X 94_C 1 minute
53_C 2 Minuten 72_C 3 Minuten53_C 2 minutes 72_C 3 minutes
1X 72 C 10 Minuten1X 72 C 10 minutes
Die PCR-Amplifikation mit PR1 und PR2 resultierte in einem 1155 Bp-Fragment, das für ein Protein bestehend aus der gesamten Primärsequenz codiert: gaagcatgca gctagcagcg acagtaatgt tggagcagct taccggaagc gctgaggcac 60 tcaaggagaa ggagaaggag gttgcaggca gctctgacgt gttgcgtaca tgggcgaccc 120 agtactcgct tccgtcagag gagtcagacg cggcccgccc gggactgaag aatgcctaca 180 agccaccacc ttccgacaca aagggcatca caatggcgct agctgtcatc ggctcctggg 240 ccgcagtgtt cctccacgcc atttttcaaa tcaagcttcc gacctccttg gaccagctgc 300 actggctgcc cgtgtcagat gccacagctc agctggttag cggcagcagc agcctgctgc 360 acatcgtcgt agtattcttt gtcctggagt tcctgtacac aggccttttt atcaccacgc 420 atgatgctat gcatggcacc atcgccatga gaaacaggca gcttaatgac ttcttgggca 480 gagtatgcat ctccttgtac gcctggtttg attacaacat gctgcaccgc aagcattggg 540 agcaccacaa ccacactggc gaggtgggca aggaccctga cttccacagg ggaaaccctg 600 gcattgtgcc ctggtttgcc agcttcatgt ccagctacat gtcgatgtgg cagtttgcgc 660 gcctcgcatg gtggacggtg gtcatgcagc tgctgggtgc gccaatggcg aacctgctgg 720 tgttcatggc ggccgcgccc atcctgtccg ccttccgctt gttctacttt ggcacgtaca 780 tgccccacaa gcctgagcct ggcgccgcgt caggctcttc accagccgtc atgaactggt 840 ggaagtcgcg cactagccag gcgtccgacc tggtcagctt tctgacctgc taccacttcg 900 acctgcactg ggagcaccac cgctggccct ttgccccctg gtgggagctg cccaactgcc 960 gccgcctgtc tggccgaggt ctggttcctg cctagctgga cacactgcag tgggccctgc 1020 tgccagctgg gcatgcaggt tgtggcagga ctgggtgagg tgaaaagctg caggcgctgc 1080 tgccggacac gctgcatggg ctaccctgtg tagctgccgc cactagggga gggggtttgt 1140 agctgtcgag cttgcThe PCR amplification with PR1 and PR2 resulted in a 1155 bp fragment consisting encodes a protein consisting of the entire primary sequence: gaagcatgca gctagcagcg acagtaatgt tggagcagct taccggaagc gctgaggcac 60 tcaaggagaa ggagaaggag gttgcaggca gctctgacgt gttgcgtaca tgggcgaccc 120 agtactcgct tccgtcagag gagtcagacg cggcccgccc gggactgaag aatgcctaca 180 agccaccacc ttccgacaca aagggcatca caatggcgct agctgtcatc ggctcctggg 240 ccgcagtgtt cctccacgcc atttttcaaa tcaagcttcc gacctccttg gaccagctgc 300 actggctgcc cgtgtcagat gccacagctc agctggttag cggcagcagc agcctgctgc 360 acatcgtcgt agtattcttt gtcctggagt tcctgtacac aggccttttt atcaccacgc 420 atgatgctat gcatggcacc atcgccatga gaaacaggca gcttaatgac ttcttgggca 480 gagtatgcat ctccttgtac gcctggtttg attacaacat gctgcaccgc aagcattggg 540 agcaccacaa ccacactggc gaggtgggca aggaccctga cttccacagg ggaaaccctg 600 gcattgtgcc ctggtttgcc agcttcatgt ccagctacat gtcgatgtgg cagtttgcgc 660 gcctcgcatg gtggacggtg gtcatgcagc tgctgggtgc gccaatggcg aacctgctgg 720 tgttcatggc ggccgcgccc atcctgtccg ccttccgctt gttctacttt ggcacgtaca 780 tgccccacaa gcctgagcct ggcgccgcgt caggctcttc accagccgtc atgaactggt 840 ggaagtcgcg cactagccag gcgtccgacc tggtcagctt tctgacctgc taccacttcg 900 acctgcactg ggagcaccac cgctggccct ttgccccctg gtgggagctg cccaactgcc 960 gccgcctgtc tggccgaggt ctggttcctg cctagctgga cacactgcag tgggccctgc 1020 tgccagctgg gcatgcaggt tgtggcagga ctgggtgagg tgaaaagctg caggcgctgc 1080 tgccggacac gctgcatggg ctaccctgtg tagctgccgc cactagggga gggggtttgt 1140 agctgtcgag cttgc
Unter Verwendung von Standardmethoden wurde das Amplifikat in den PCR- Klonierungsvektor pGEM-Teasy (Promega) kloniert und der Klon pGKETO2 erhalten.Using standard methods, the amplificate was cloned into the PCR cloning vector pGEM-Teasy (Promega) and the clone pGKETO2 was obtained.
Sequenzierung des Klons pGKETO2 mit dem T7- und dem SP6-Primer bestätigte eine Sequenz, die sich lediglich in den drei Codons 73, 114 und 119 in je einer Base von der publizierten Sequenz X86782 unterscheidet. Diese Nukleotidaustausche wurden in einem unabhängigem Amplifikationsexperiment reproduziert und repräsentieren sornit die Nukleotidsequenz im verwendeten Haematococcus pluvialis Stamm 192.80.Sequencing of the clone pGKETO2 with the T7 and SP6 primers confirmed a sequence which differs from the published sequence X86782 only in the three codons 73, 114 and 119 in one base each. These nucleotide changes were reproduced in an independent amplification experiment and now represent the nucleotide sequence in the Haematococcus pluvialis strain 192.80 used.
Dieser Klon wurde für die Klonierung in den unter Beispiel 1 beschriebenen Expressionsvektor verwendet. Die Klonierung erfolgte analog wie in Beispiel 1 beschrieben. Die Transformation der E.coli Stämme, deren Kultivierung und die Analyse des Caroti- noidprofils erfolgte wie in Beispiel 3 beschrieben.This clone was used for the cloning in the expression vector described in Example 1. The cloning was carried out analogously to that described in Example 1. The transformation of the E. coli strains, their cultivation and the analysis of the carotenoid profile were carried out as described in Example 3.
Abbildung 2 zeigt die chromatographische Analyse einer Probe erhalten aus einem mit diesem Expressionsvektor und pMCL-CrtYlBZ/idi/gps transformierten E. co//-Stamm. Unter Verwendung einer Ketolase aus Haematococcus pluvialis, wie beispielsweise in EP 725137 beschrieben, eluieren mit zunehmender Retentionszeit Astaxanthin (Peak 1), Adonixanthin (Peak 2) und nicht umgesetztes Zeaxanthin (Peak 3). Dieses Caroti- noidprofil wurde bereits in EP 0725137 beschrieben.Figure 2 shows the chromatographic analysis of a sample obtained from an E. co // strain transformed with this expression vector and pMCL-CrtYlBZ / idi / gps. Using a ketolase from Haematococcus pluvialis, as described for example in EP 725137, elute with increasing retention time astaxanthin (peak 1), adonixanthin (peak 2) and unreacted zeaxanthin (peak 3). This carotenoid profile has already been described in EP 0725137.
Tabelle 1 zeigt einen Vergleich der bakteriell produzierten Carotinoidmengen:Table 1 shows a comparison of the bacterially produced amounts of carotenoids:
Tablelle 1 : Vergleich der bakteriellen Ketocarotinoid-Synthese bei Verwendung zweier verschiedener Ketolasen, der erfindungsgemäßen NOST-Ketolase aus Nostoc sp. PCC7120 (Beispiel 3) und der Ketolase aus Haematococcus pluvialis als Vergleichsbeispiel (Beispiel 3.1). Carotinoidmengen sind in ng/ ml Kulturflüssigkeit angegeben. Table 1: Comparison of the bacterial ketocarotenoid synthesis using two different ketolases, the NOST ketolase from Nostoc sp. PCC7120 (Example 3) and the ketolase from Haematococcus pluvialis as a comparative example (Example 3.1). Amounts of carotenoids are given in ng / ml culture fluid.
Die erfindungsgemäße Expression der Ketolase aus Nostoc sp. Strain PCC7120 führt zu einem Carotinoidmuster, welches sich von dem Carotinoidmuster nach Expression einer Ketolase aus Haematococcus pluvialis deutlich unterscheidet. Während die Keto- läse aus dem Stand der Technik nur sehr unvollständig das gewünschte Ketocarotinoid Astaxanthin liefert, ist Astaxanthin bei der Verwendung der erfindungsgemäßen Ketolase das Hauptprodukt. Im erfindungsgemäßen Verfahren treten hydroxylierte Nebenprodukte in einer deutlich geringeren Menge auf.The expression of the ketolase from Nostoc sp. Strain PCC7120 leads to a carotenoid pattern, which differs significantly from the carotenoid pattern after expression of a ketolase from Haematococcus pluvialis. While the keto lens from the prior art provides the desired ketocarotenoid astaxanthin only incompletely, astaxanthin is the main product when using the ketolase according to the invention. In the process according to the invention, hydroxylated by-products occur in a significantly smaller amount.
Beispiel 4:Example 4:
Herstellung von Expressionsvektoren zur konstitutiven Expression der Nostoc sp. PCC 7120 NOST-Ketolase in Lycopersicon esculentum und Tagetes erecta. / Production of expression vectors for the constitutive expression of Nostoc sp. PCC 7120 NOST-Ketolase in Lycopersicon esculentum and Tagetes erecta. /
Die Expression der NOST-Ketolase aus Nostoc sp. PCC7120 in L esculentum und in Tagetes erecta erfolgte unter Kontrolle des konstitutiven Promoters FNR (Ferredoxin- NADPH- Oxidoreductase, Datenbankeintrag AB011474 Position 70127 bis 69493; WO03/006660), aus Arabidopsis thallana. Das FNR-Gen beginnt bei Basenpaar 69492 und ist mit "Ferredoxin-NADP+ Reductase" annotiert. Die Expression erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al. 1986, Biochem J. 240:709-715).The expression of the NOST ketolase from Nostoc sp. PCC7120 in Lesculentum and in Tagetes erecta was carried out under control of the constitutive promoter FNR (ferredoxin-NADPH-oxidoreductase, database entry AB011474 position 70127 to 69493; WO03 / 006660) from Arabidopsis thallana. The FNR gene begins at base pair 69492 and is annotated with "ferredoxin-NADP + reductase". Expression was carried out using the pea transit peptide rbcS (Anderson et al. 1986, Biochem J. 240: 709-715).
Das DNA Fragment, das die FNR Promotorregion aus Arabidopsis thallana beinhaltet, wurde mittels PCR unter Verwendung genomischer DNA (nach Standardmethoden aus Arabidopsis thallana isoliert) sowie der Primer FNR-A (SEQ ID No.38) und FNR-B (SEQ ID No. 39) hergestellt.The DNA fragment containing the FNR promoter region from Arabidopsis thallana was PCR-analyzed using genomic DNA (isolated from Arabidopsis thallana according to standard methods) as well as the primers FNR-A (SEQ ID No.38) and FNR-B (SEQ ID No. 39).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA, die das FNR-Promotorfragment FNR#1 ) beinhaltet, erfolgte in einem 50 ul Reaktionsansatz, in dem enthalten war: 100 ng genomischer DNA aus A.thaliana 0.25 mM dNTPs 0.2 mM FNR-A (SEQ ID No. 38) 0.2 mM FNR-B (SEQ ID No. 39) - 5 ul IOX PCR-Puffer (Stratagene)The PCR for the amplification of the DNA, which contains the FNR promoter fragment FNR # 1), was carried out in a 50 μl reaction mixture which contained: 100 ng genomic DNA from A.thaliana 0.25 mM dNTPs 0.2 mM FNR-A (SEQ ID No. 38) 0.2 mM FNR-B (SEQ ID No. 39) - 5 μl IOX PCR buffer (Stratagene)
0.25 ul Pfu Polymerase (Stratagene) 28.8 ul Aq. Dest.0.25 µl Pfu Polymerase (Stratagene) 28.8 µl Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94°C 2 Minuten 35X g4°C 1 Minute 50°C 1 Minute 72°C 1 Minute 1 X 72°C 10 Minuten1X 94 ° C 2 minutes 35X g4 ° C 1 minute 50 ° C 1 minute 72 ° C 1 minute 1 X 72 ° C 10 minutes
Das 647 bp Amplifikat wurde unter Verwendung von Standardmethoden in den PCR-The 647 bp amplificate was determined using standard methods in the PCR
XX
Klonierungsvektor pCR 2.1 (Invitrogen) kloniert und das Plasmid pFNR#1 erhalten.Cloning vector pCR 2.1 (Invitrogen) cloned and the plasmid pFNR # 1 obtained.
Sequenzierung des Klons pFNR#1 bestätigte eine Sequenz,die mit einem Sequenzabschnitt auf Chromosom 5 von Arabidopsis thaliana (Datenbankeintrag AB011474; WO03/006660) von Position 70127 bis 6g4g3 übereinstimmt. Das FNR-Gen beginnt - bei Basenpaar 6g4 2 und ist mit "Ferredoxin-NADP+ Reductase" annotiert.Sequencing of clone pFNR # 1 confirmed a sequence which corresponds to a sequence section on chromosome 5 of Arabidopsis thaliana (database entry AB011474; WO03 / 006660) from position 70127 to 6g4g3. The FNR gene begins - at base pair 6g4 2 and is annotated with "ferredoxin-NADP + reductase".
pFNR wurde daher für die Klonierung in den Expressionsvektor pJIT117 (Guerineau et al. 1988, Nucl. Acids Res. 16: 11380) verwendet.pFNR was therefore used for cloning into the expression vector pJIT117 (Guerineau et al. 1988, Nucl. Acids Res. 16: 11380).
Die Klonierung erfolgte durch Isolierung des 637 bp Sacl-Hindlll Fragmentes aus pFNR#1 (partialle Sacl Hydrolyse) und Ligierung in den Sacl-Hindlll geschnittenen Vektor pJIT117. Der Klon, der den Promoter FNR#1 anstelle des ursprünglichen Promoters d35S enthält, heisst pJITFNR.The cloning was carried out by isolating the 637 bp Sacl-Hindlll fragment from pFNR # 1 (partial Sacl hydrolysis) and ligating into the Sacl-Hindlll cut vector pJIT117. The clone that contains the promoter FNR # 1 instead of the original promoter d35S is called pJITFNR.
Zur Herstellung einer Expressionskassette pJFNRNOST wurde das 799 bp SpHI- Fragment NOSTF-G (in Beispiel 1 beschrieben) in den SpHI geschnittenen Vektor pJITFNR kloniert. Der Klon, der das Fragment NOSTF-G in der korrekten Orientierung als N-terminale Fusion mit dem rbcS Transitpeptid enthält, heisst pJFNRNOST.To produce an expression cassette pJFNRNOST, the 799 bp SpHI fragment NOSTF-G (described in Example 1) was cut into the SpHI vector pJITFNR cloned. The clone that contains the fragment NOSTF-G in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJFNRNOST.
Die Herstellung einer Expressionskassette für die Agrobacterium vermittelte Transfor- mation der Ketolase aus Nostoc in L esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO0200900).An expression cassette for the Agrobacterium -mediated transformation of the ketolase from Nostoc into lesculentum was produced using the binary vector pSUN3 (WO0200900).
Zur Herstellung des Expressionsvektors pS3FNR:NOST (MSP101) wurde das 2.425 bp Sacl-Xhol Fragment (partialle Sacl Hydrolyse) aus pJFNRNOST mit dem Sacl-Xhol geschnittenen Vektor pSUN3 ligiert (Abbildung 3, Konstruktkarte). In der Abbildung 3 beinhaltet Fragment FNR-Promotor den FNR Promotor (635 bp), Fragment rbcS TP Fragment das rbcS Transitpeptid aus Erbse (194 bp), Fragment Nost Ketolase CDS (777 bp) die gesamte Primärsequenz, kodierend für die Nostoc Ketolase, Fragment 35S Term (746 bp) das Polyadenylierungssignal von CaMV.To produce the expression vector pS3FNR: NOST (MSP101), the 2,425 bp Sacl-Xhol fragment (partial Sacl hydrolysis) from pJFNRNOST was ligated with the Sacl-Xhol cut vector pSUN3 (Figure 3, construct map). In Figure 3 fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP fragment the rbcS transit peptide from pea (194 bp), fragment Nost Ketolase CDS (777 bp) the entire primary sequence coding for the Nostoc Ketolase, fragment 35S Term (746 bp) the polyadenylation signal of CaMV.
Die Herstellung einer Expressionskassette für die Agrobacterium-vet rMeWe Transformation des Expressionsvektor mit der Ketolase aus Nostoc in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO02/00900).An expression cassette for the Agrobacterium-vet rMeWe transformation of the expression vector with the ketolase from Nostoc in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00900).
Zur Herstellung des Tagetes-Expressionsvektors pS5FNR:NOST (MSP102) wurde das 2.425 bp Sacl-Xhol Fragment (partielle Sacl Hydrolyse) aus pJFNRNOST mit dem Sacl-Xhol geschnittenen Vektor pSUN5 ligiert (Abbildung 4, Konstruktkarte). In der Abbildung 4 beinhaltet Fragment FNR Promotor den FNR Promotor (635 bp), Fragment rbcS Transit Peptide das rbcS Transitpeptid aus Erbse (1 g4 bp), Fragment Nost Ketolase (777 bp) die gesamte Primärsequenz, kodierend für die Nostoc Ketolase, Fragment 35S Terminator (746 bp) das Polyadenylierungssignal von CaMV.To produce the Tagetes expression vector pS5FNR: NOST (MSP102), the 2,425 bp Sacl-Xhol fragment (partial Sacl hydrolysis) from pJFNRNOST was ligated with the Sacl-Xhol cut vector pSUN5 (Figure 4, construct map). In Figure 4, fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS transit peptide the rbcS transit peptide from pea (1 g4 bp), fragment Nost ketolase (777 bp) the entire primary sequence, coding for the nostoc ketolase, fragment 35S Terminator (746 bp) the CaMV polyadenylation signal.
Beispiel 5:Example 5:
Herstellung von Expressionsvektoren zur blütenspezifischen Expression der Nostoc sp. PCC 7120 NOST-Ketolase in Lycopersicon esculentum und Tagetes erecta.Production of expression vectors for the flower-specific expression of Nostoc sp. PCC 7120 NOST-Ketolase in Lycopersicon esculentum and Tagetes erecta.
Die Expression der Ketolase aus Nostoc in L. esculentum und Tagetes erecta erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al. 1986, Biochem J. 240:709-715). Die Expression erfolgte unter Kontrolle einer modifizierten Version AP3P des blüten- spezifischen Promoters AP3 aus Arabidopsis thaliana (AL132971 : Nukleotidregion 9298-10200; Hill et al. (1998) Development 125: 1711-1721). Das DNA Fragment, das die AP3 Promoterregion -902 bis +15 aus Arabidopsis thalia- na beinhaltet, wurde mittels PCR unter Verwendung genomischer DNA (nach Standardmethoden aus Arabidopsis thaliana isoliert) sowie der Primer AP3-1 (SEQ ID No.41) und AP3-2 (SEQ ID No. 42) hergestellt.The expression of the ketolase from Nostoc in L. esculentum and Tagetes erecta was carried out with the transit peptide rbcS from pea (Anderson et al. 1986, Biochem J. 240: 709-715). The expression was carried out under the control of a modified version AP3P of the flower-specific promoter AP3 from Arabidopsis thaliana (AL132971: nucleotide region 9298-10200; Hill et al. (1998) Development 125: 1711-1721). The DNA fragment, which contains the AP3 promoter region -902 to +15 from Arabidopsis thalia- na, was PCR-analyzed using genomic DNA (isolated from Arabidopsis thaliana according to standard methods) and the primers AP3-1 (SEQ ID No.41) and AP3 -2 (SEQ ID No. 42).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA, die das AP3-Promoterfragment (-902 bis +15) beinhaltet, erfolgte in einem 50 μl Reaktionsansatz, in dem enthalten war:The PCR for the amplification of the DNA, which contains the AP3 promoter fragment (-902 to +15), was carried out in a 50 μl reaction mixture, which contained:
100 ng genomischer DNA aus A.thaliana100ng of A. thaliana genomic DNA
0.25 mM dNTPs0.25 mM dNTPs
0.2 mM AP3-1 (SEQ ID No. 41 )0.2 mM AP3-1 (SEQ ID No. 41)
0.2 mM AP3-2 (SEQ ID No. 42) - 5 ul IOX PCR-Puffer (Stratagene)0.2 mM AP3-2 (SEQ ID No. 42) - 5 ul IOX PCR buffer (Stratagene)
0.25 ul Pfu Polymerase (Stratagene)0.25 µl Pfu polymerase (Stratagene)
28.8 ul Aq. Dest.28.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1 X 94°C 2 Minuten 35X 94°C 1 Minute 50°C 1 Minute 72°C 1 Minute 1X 72°C 10 Minuten1 X 94 ° C 2 minutes 35X 94 ° C 1 minute 50 ° C 1 minute 72 ° C 1 minute 1X 72 ° C 10 minutes
Das 2 Bp Amplifikat wurde unter Verwendung von Standardmethoden in den PCR- Klonierungsvektor pCR 2.1 (Invitrogen) kloniert und das Plasmid pAP3 erhalten.The 2 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) using standard methods and the plasmid pAP3 was obtained.
Sequenzierung des Klons pAP3 bestätigte eine Sequenz, die sich lediglich in durch eine Insertion (ein G in Position g765 der Sequenz AL132g71) und einen Basenaustausch (ein G statt ein A in Position g726 der Sequenz AL132971) von der publizierten AP3 Sequenz (AL132g71 , Nukleotidregion g2g8-10200) unterscheidet. Diese Nukleoti- dunterschiede wurden in einem unabhängigen Amplifikationsexperiment reproduziert und repräsentieren somit die tatsächliche Nukleotidsequenz in den verwendeten Arabidopsis thaliana Pflanzen.Sequencing of the clone pAP3 confirmed a sequence consisting only of an insertion (a G in position g765 of the sequence AL132g71) and a base exchange (a G instead of an A in position g726 of the sequence AL132971) of the published AP3 sequence (AL132g71, nucleotide region g2g8-10200) differs. These nucleotide differences were reproduced in an independent amplification experiment and thus represent the actual nucleotide sequence in the Arabidopsis thaliana plants used.
Die modifizierte Version AP3P wurde mittels rekombinanter PCR unter Verwendung des Plasmids pAP3 hergestellt. Die Region 10200 - g771 wurde mit den Primern AP3-1 (SEQ ID No. 41) und Primern AP3-4 (SEQ ID No. 44) amplifiziert (Amplifikat A1/4), die Region g526-g285 wurde mit den AP3-3 (SEQ ID No. 43) und AP3-2 (SEQ ID No. 42) amplifiziert (Amplifikat A2/3).The modified version AP3P was produced by means of recombinant PCR using the plasmid pAP3. The region 10200 - g771 was amplified with the primers AP3-1 (SEQ ID No. 41) and primers AP3-4 (SEQ ID No. 44) (amplificate A1 / 4), the region g526-g285 with the AP3-3 (SEQ ID No. 43) and AP3-2 (SEQ ID No. 42) amplified (amplificate A2 / 3).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR-Reaktionen zur Amplifikation der DNA- Fragmente, die die Regionen Region 10200 - 9771 und Region 9526-9285 des AP3 Promoters beinhalten, erfolgte in 50 ul Reaktionsansätzen, in denen enthalten war:The PCR reactions for the amplification of the DNA fragments, which contain the regions region 10200-9771 and region 9526-9285 of the AP3 promoter, were carried out in 50 μl reaction batches which contained:
100 ng AP3 Amplifikat (oben beschrieben) 0.25 mM dNTPs100ng AP3 amplificate (described above) 0.25mM dNTPs
0.2 mM sense Primer (AP3-1 SEQ ID No. 41 bzw. AP3-3 SEQ ID No. 43) 0.2 mM antisense Primer (AP3-4 SEQ ID No. 44 bzw. AP3-2 SEQ ID No. 42) - 5 ul IOX PCR-Puffer (Stratagene)0.2 mM sense primer (AP3-1 SEQ ID No. 41 or AP3-3 SEQ ID No. 43) 0.2 mM antisense primer (AP3-4 SEQ ID No. 44 or AP3-2 SEQ ID No. 42) - 5 ul IOX PCR buffer (Stratagene)
0.25 ul Pfu Taq Polymerase (Stratagene) 28.8 ul Aq. Dest.0.25 µl Pfu Taq Polymerase (Stratagene) 28.8 µl Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94°C 2 Minuten 35X g4°C 1 Minute1X 94 ° C 2 minutes 35X g4 ° C 1 minute
50°C 1 Minute50 ° C for 1 minute
72°C 1 Minute 1 X 72°C 10 Minuten72 ° C 1 minute 1 X 72 ° C 10 minutes
Die rekombinante PCR beinhaltet Annealing der sich über eine Sequenz von 25 Nukleotiden überlappenden Amplifikate A1/4 und A2/3, Vervollständigung zu einem Doppelstrang und anschließende Amplifizierung. Dadurch entsteht eine modifizierte Version des AP3 Promoters, AP3P, in dem die Positionen g670 - 9526 deletiert sind. Die Denaturierung (5 min bei 95°C) und Annealing (langsame Abkühlung bei Raumtemperatur auf 40°C) beider Amplifikate A1/4 und A2/3 erfolgte in einem 17.6 ul Reaktionsansatz, in dem enthalten war:The recombinant PCR includes annealing of the amplificates A1 / 4 and A2 / 3, which overlap over a sequence of 25 nucleotides, completion into a double strand and subsequent amplification. This creates a modified version of the AP3 promoter, AP3P, in which positions g670 - 9526 are deleted. The denaturation (5 min at 95 ° C.) and annealing (slow cooling at room temperature to 40 ° C.) of both amplicons A1 / 4 and A2 / 3 was carried out in a 17.6 μl reaction mixture which contained:
0.5 ug A1/4 Amplifikat 0.25 ug A2/3 Amplifikat0.5 ug A1 / 4 amplificate 0.25 ug A2 / 3 amplificate
Das Auffüllen der 3'-Enden (30 min bei 30°C) erfolgte in einem 20 ul Reaktionsansatz, in dem enthalten war:The 3 'ends were filled in (30 min at 30 ° C.) in a 20 μl reaction mixture which contained:
17.6 ul A1/4 und A2/3-Annealingsreaktion (hergestellt wie oben beschrieben)17.6 ul A1 / 4 and A2 / 3 annealing reaction (prepared as described above)
50 uM dNTPs50 µM dNTPs
2 ul IX KIenow Puffer2 ul IX KIenow buffer
2U Klenow Enzym2U Klenow enzyme
Die Nukleinsäure kodierend für die modifizierte Promoterversion AP3P wurde mittels PCR unter Verwendung eines sense spezifischen Primers (AP3-1 SEQ ID No. 41) und eines antisense spezifischen Primers (AP3-2 SEQ ID No. 42) amplifiziert.The nucleic acid coding for the modified promoter version AP3P was amplified by means of PCR using a sense-specific primer (AP3-1 SEQ ID No. 41) and an antisense-specific primer (AP3-2 SEQ ID No. 42).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation des AP3P Fragmentes erfolgte in einem 50 ul Reaktionsansatz, in dem enthalten war:The PCR for the amplification of the AP3P fragment was carried out in a 50 μl reaction mixture, which contained:
- 1 ul Annealingsreaktion (hergestellt wie oben beschrieben)- 1 ul annealing reaction (prepared as described above)
0.25 mM dNTPs0.25 mM dNTPs
0.2 mM AP3-1(SEQ ID No. 41)0.2 mM AP3-1 (SEQ ID No. 41)
0.2 mM AP3-2 (SEQ ID No. 42)0.2 mM AP3-2 (SEQ ID No. 42)
5 ul IOX PCR-Puffer (Stratagene) - 0.25 ul Pfu Taq Polymerase (Stratagene)5 µl IOX PCR buffer (Stratagene) - 0.25 µl Pfu Taq Polymerase (Stratagene)
28.8 ul Aq. Dest.28.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94°C 2 Minuten 35X g4°C 1 Minute 50°C 1 Minute 72°C 1 Minute 1X 72°C 10 Minuten1X 94 ° C 2 minutes 35X g4 ° C 1 minute 50 ° C 1 minute 72 ° C 1 minute 1X 72 ° C 10 minutes
Die PCR-Amplifikation mit SEQ ID No. 41 (AP3-1) und SEQ ID No. 42 (AP3-2) resultierte in einem 777 Bp Fragment, das für die modifizierte Promoterversion AP3P kodiert. Das Amplifikat wurde in den Klonierungsvektor pCR2.1 (Invitrogen) kloniert und das Plasmid pAP3P erhalten. Sequenzierungen mit den Primern T7 und M13 bestätigten eine zur Sequenz AL132971 , Region 10200-92g8 identische Sequenz, wobei die interne Region g285 - g526 deletiert wurde. Diese Klon wurde daher für die Klonierung in den Expressionsvektor pJIT117 (Guerineau et al. 1988, Nucl. Acids Res. 16: 11380) verwendet.PCR amplification with SEQ ID No. 41 (AP3-1) and SEQ ID No. 42 (AP3-2) resulted in a 777 bp fragment which codes for the modified promoter version AP3P. The amplificate was cloned into the cloning vector pCR2.1 (Invitrogen) and the plasmid pAP3P was obtained. Sequencing with the primers T7 and M13 confirmed a sequence identical to the sequence AL132971, region 10200-92g8, the internal region g285-g526 being deleted. This clone was therefore used for the cloning into the expression vector pJIT117 (Guerineau et al. 1988, Nucl. Acids Res. 16: 11380).
Die Klonierung erfolgte durch Isolierung des 767 Bp Sacl-Hindlll Fragmentes aus pAP3P und Ligierung in den Sacl-Hindlll geschnittenen Vektor pJIT117. Der Klon, der den Promoter AP3P anstelle des ursprünglichen Promoters d35S enthält, heisst pJI- TAP3P. Zur Herstellung einer Expressionskassette pJAP3NOST wurde das 79g Bp SpHI-Fragment NOSTF-G (in Beispiel 1 beschrieben) in den SpHI geschnittenen Vektor pJITAP3P kloniert. Der Klon, der das Fragment NOSTF-G in der korrekten Orientie- rung als N-terminale Fusion mit dem rbcS Transitpeptid enthält, heisst pJAP3PNOST.The cloning was carried out by isolating the 767 bp SacI-HindIII fragment from pAP3P and ligating into the SacI-HindIII cut vector pJIT117. The clone that contains the promoter AP3P instead of the original promoter d35S is called pJITAP3P. To produce an expression cassette pJAP3NOST, the 79 g bp SpHI fragment NOSTF-G (described in Example 1) was cloned into the SpHI-cut vector pJITAP3P. The clone that contains the fragment NOSTF-G in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJAP3PNOST.
Die Herstellung eines Expressionsvektors für die Agrobacterium-vermittelte Transformation der AP3P-kontrollierten Ketolase aus Nostoc in L esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO02/00900).An expression vector for the Agrobacterium -mediated transformation of the AP3P-controlled ketolase from Nostoc to Lesculentum was produced using the binary vector pSUN3 (WO02 / 00900).
Zur Herstellung des Expressionsvektors pS3AP3:NOST (MSP103) wurde das 2.555 bp Sacl-Xhol Fragment aus pJAP3NOST mit dem Sacl-Xhol geschnittenen Vektor pSUN3 ligiert (Abbildung 5, Konstruktkarte). In der Abbildung 5 beinhaltet Fragment AP3P PROMOTER den modifizierten AP3P Promoter ( 765 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (194 bp), Fragment NOST KETOLASE CDS (777bp) die gesamte Primärsequenz kodierend für die Nostoc Ketolase, Fragment 35S TERM (746 bp) das Polyadenylierungssignal von CaMV. Die Herstellung einer Expressionsvektors für die Agrobacterium-vermittelte Transformation der AP3P-kontrollierten Ketolase aus Nostoc in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO02/00900).To produce the expression vector pS3AP3: NOST (MSP103), the 2,555 bp Sacl-Xhol fragment from pJAP3NOST was ligated with the Sacl-Xhol cut vector pSUN3 (Figure 5, construct map). In Figure 5 fragment AP3P PROMOTER contains the modified AP3P promoter (765 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NOST KETOLASE CDS (777bp) the entire primary sequence coding for the nostoc ketolase, fragment 35S TERM (746 bp) the polyadenylation signal of CaMV. An expression vector for the Agrobacterium -mediated transformation of the AP3P-controlled ketolase from Nostoc into Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00900).
Zur Herstellung des Expressionsvektors pS5AP3:NOST (MSP104) wurde das 2.555 bp Sacl-Xhol Fragment aus pS5AP3PNOST mit dem Sacl-Xhol geschnittenen Vektor pSUN5 ligiert (Abbildung 6, Konstruktkarte). In der Abbildung 6 beinhaltet Fragment AP3P PROMOTER den modifizierten AP3P Promoter (765 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (207 bp), Fragment NOST KETOLASE CDS (777 bp) die gesamte Primärsequenz codierend für die Nostoc Ketolase, Fragment 35S TERM (746 bp) das Polyadenylierungssignal von CaMV.To produce the expression vector pS5AP3: NOST (MSP104), the 2,555 bp Sacl-Xhol fragment from pS5AP3PNOST was ligated with the Sacl-Xhol cut vector pSUN5 (Figure 6, construct map). In Figure 6 fragment AP3P PROMOTER contains the modified AP3P promoter (765 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (207 bp), fragment NOST KETOLASE CDS (777 bp) the entire primary sequence coding for the nostoc ketolase, fragment 35S TERM (746 bp) the polyadenylation signal of CaMV.
Beispiel 6Example 6
Amplifikation einer DNA, die die gesamte Primärsequenz der NPigβ-Ketolase aus Nostoc punctiforme A TCC 29133 kodiertAmplification of a DNA encoding the entire primary sequence of NPigβ ketolase from Nostoc punctiforme A TCC 29133
Die DNA, die für die NPigβ-Ketolase aus Nostoc punctiforme ATCC 29133 kodiert,-The DNA coding for the NPigβ ketolase from Nostoc punctiforme ATCC 29133,
X wurde mittels PCR aus Nostoc punctiforme ATCC 29133 (Stamm der "American Type Culture Collection") amplifiziert.X was amplified by PCR from Nostoc punctiform ATCC 29133 (strain of the "American Type Culture Collection").
Für die Präparation von genomischer DNA aus einer Suspensionskultur von Nostoc punctiforme ATCC 29133, die 1 Woche mit Dauerlicht und konstantem Schütteln (150 rpm) at 25°C in BG 17-Medium (1.5 g/l NaNO3, 0.04 g/l K2PO4x3H2O, 0.075 g/l MgSO4xH O, 0.036 g/l CaCI2x2H2O, 0.006 g/l citric acid, 0.006 g/l Ferric ammonium citrate, 0.001 g/l EDTA disodium magnesium, 0.04 g/l Na2CO3, 1ml Trace Metal Mix "A5+Co" (2.86 g/l H3BO3, 1.81 g/l MnCI2x4H2o, 0.222 g/l ZnSO4x7H20, 0.3g g/l Na- MoO4X2H2o, 0.07g g/l CuSO4x5H2O, 0.04g4 g/l Co(NO3)2x6H2O) gewachsen war, wurden die Zellen durch Zentrifugation geerntet, in flüssigem Stickstoff eingefroren und im Mörser pulverisiert.For the preparation of genomic DNA from a suspension culture of Nostoc punctiforme ATCC 29133, which is maintained for 1 week with continuous light and constant shaking (150 rpm) at 25 ° C in BG 17 medium (1.5 g / l NaNO 3 , 0.04 g / l K 2 PO 4 x3H 2 O, 0.075 g / l MgSO 4 xH O, 0.036 g / l CaCI 2 x2H 2 O, 0.006 g / l citric acid, 0.006 g / l Ferric ammonium citrate, 0.001 g / l EDTA disodium magnesium, 0.04 g / l Na 2 CO 3 , 1ml trace metal mix "A5 + Co" (2.86 g / l H 3 BO 3 , 1.81 g / l MnCI 2 x4H 2 o, 0.222 g / l ZnSO 4 x7H 2 0, 0.3gg / l Na-MoO 4 X2H 2 o, 0.07gg / l CuSO 4 x5H 2 O, 0.04g4 g / l Co (NO 3 ) 2 x6H 2 O), the cells were harvested by centrifugation, frozen in liquid nitrogen and in a mortar pulverized.
Protokoll für die DNA-Isolation aus Nostoc punctiforme ATCC 29133:Protocol for DNA isolation from Nostoc punctiform ATCC 29133:
Aus einer 10 ml Flüssigkultur wurden die Bakterienzellen durch 10 minütige Zentrifugation bei 8000 rpm pelletiert. Anschließend wurden die Bakterienzellen in flüssigem Stickstoff mit einem Mörser zerstoßen und gemahlen. Das Zellmaterial wurde in 1 ml 10mM Tris_HCI (pH 7.5) resuspendiert und in ein Eppendorf-Reaktionsgefäß (2ml Vo- lumen) überführt. Nach Zugabe von 100 μl Proteinase K (Konzentration: 20 mg/ml) wurde die Zellsuspension für 3 Stunden bei 37°C inkubiert. Anschließend wurde die Suspension mit 500 μl Phenol extrahiert. Nach δminütiger Zentrifugation bei 13 000 upm wurde die obere, wässrige Phase in ein neues 2 ml-Eppendorf-Reaktionsgefäß i überführt. Die Extraktion mit Phenol wurde 3mal wiederholt. Die DNA wurde durch Zugabe von 1/10 Volumen 3 M Natriumacetat (pH 5.2) und 0.6 Volumen Isopropanol gefällt und anschließend mit 70% Ethanol gewaschen. Das DNA-Pellet wurde bei Raumtemperatur getrocknet, in 25 μl Wasser aufgenommen und unter Erhitzung auf 65°C gelöst.The bacterial cells were pelleted from a 10 ml liquid culture by centrifugation at 8000 rpm for 10 minutes. The bacterial cells were then crushed and ground in liquid nitrogen using a mortar. The cell material was resuspended in 1 ml of 10 mM Tris_HCI (pH 7.5) and placed in an Eppendorf reaction vessel (2 ml of lumen) transferred. After adding 100 μl Proteinase K (concentration: 20 mg / ml), the cell suspension was incubated for 3 hours at 37 ° C. The suspension was then extracted with 500 μl of phenol. After centrifugation at 13,000 rpm for δ minutes, the upper, aqueous phase was transferred to a new 2 ml Eppendorf reaction vessel i. The extraction with phenol was repeated 3 times. The DNA was precipitated by adding 1/10 volume of 3 M sodium acetate (pH 5.2) and 0.6 volume of isopropanol and then washed with 70% ethanol. The DNA pellet was dried at room temperature, taken up in 25 μl of water and dissolved with heating to 65 ° C.
Die Nukleinsäure, kodierend eine Ketolase aus Nostoc punctiforme ATCC 29133, wurde mittels "polymerase chain reaction" (PCR) aus Nostoc punctiforme ATCC 29133 unter Verwendung eines sense-spezifischen Primers (NP196-1 , SEQ ID No. 54) und eines antisense-spezifischen Primers (NP196-2 SEQ ID No. 55) amplifiziert.The nucleic acid encoding a ketolase from Nostoc punctiform ATCC 29133 was determined by means of a "polymerase chain reaction" (PCR) from Nostoc punctiform ATCC 29133 using a sense-specific primer (NP196-1, SEQ ID No. 54) and an antisense-specific Primers (NP196-2 SEQ ID No. 55) amplified.
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
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Die PCR zur Amplifikation der DNA, die für ein Ketolase Protein bestehend aus der gesamten Primärsequenz kodiert, erfolgte in einem 50 ul Reaktionsansatz, in dem ent- halten warThe PCR for the amplification of the DNA, which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 μl reaction mixture which contained
1 ul einer Nostoc punctiforme ATCC 29133 DNA (hergestellt wie oben beschrieben)1 µl of a Nostoc punctiform ATCC 29133 DNA (prepared as described above)
0.25 mM dNTPs - 0.2 mM NPig6-1 (SEQ ID No. 54)0.25 mM dNTPs - 0.2 mM NPig6-1 (SEQ ID No. 54)
0.2 mM NP196-2 (SEQ ID No. 55)0.2 mM NP196-2 (SEQ ID No. 55)
5 ul 10X PCR-Puffer (TAKARA)5 ul 10X PCR buffer (TAKARA)
0.25 ul R Taq Polymerase (TAKARA)0.25 ul R Taq polymerase (TAKARA)
25.8 ul Aq. Dest.25.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94°C 2 Minuten1X 94 ° C for 2 minutes
35X 94°C 1 Minute35X 94 ° C 1 minute
55°C 1 Minuten 72°C 3 Minuten55 ° C for 1 minute 72 ° C for 3 minutes
1X 72°C 10 Minuten1X 72 ° C 10 minutes
Die PCR-Amplifikation mit SEQ ID No. 54 und SEQ ID No. 55 resultierte in einem 792 Bp-Fragment, das für ein Protein bestehend aus der gesamten Primärsequenz kodiert (NPigβ, SEQ ID No. 56). Unter Verwendung von Standardmethoden wurde das Amplifikat in den PCR-Klonierungsvektor pCR 2.1 (Invitrogen) kloniert und der Klon pNP196 erhalten.PCR amplification with SEQ ID No. 54 and SEQ ID No. 55 resulted in a 792 bp fragment that codes for a protein consisting of the entire primary sequence (NPigβ, SEQ ID No. 56). Using standard methods, the amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) and the clone pNP196 was obtained.
Sequenzierung des Klons pNP196 mit dem M13F- und dem M13R-Primer bestätigte eine Sequenz, welche mit der DNA-Sequenz von 140.571 -13g.810 des Datenbankeintrages NZ_AABC01000196 identisch ist (inverse orientiert zum veröffentlichen Datenbankeintrag) mit der Ausnahme, daß G in Position 140.571 durch A ersetzt wurde, um ein Standard-Startkodon ATG zu erzeugen. Diese Nukleotidsequenz wurde in ei- nem unabhängigem Amplif ikationsexperiment reproduziert und repräsentiert somit die Nukleotidsequenz im verwendeten Nostoc punctiforme ATCC 29133. x Dieser Klon pNP196 wurde daher für die Klonierung in den Expressionsvektor pJIT117(Guerineau et al. ig88, Nucl. Acids Res. 16: 11380) verwendet.Sequencing of the clone pNP196 with the M13F and M13R primers confirmed a sequence which is identical to the DNA sequence from 140.571 -13g.810 of the database entry NZ_AABC01000196 (inverse oriented to the published database entry) with the exception that G in position 140.571 was replaced by A to create a standard start codon ATG. This nucleotide sequence was reproduced in an independent amplification experiment and thus represents the nucleotide sequence in the Nostoc punctiform ATCC 29133 used. X This clone pNP196 was therefore used for cloning into the expression vector pJIT117 (Guerineau et al. Ig88, Nucl. Acids Res. 16: 11380) is used.
pJIT117 wurde modifiziert, indem der 35S-Terminator durch den OCS-Terminator (Oc- topine Synthase) des Ti-Plasmides pTi15g55 von Agrobacterium tumefaciens (Datenbankeintrag X004g3 von Position 12,541-12,350, Gielen et al. (ig84) EMBO J. 3835- 846) ersetzt wurde.pJIT117 was modified by using the 35S terminator through the OCS terminator (octopine synthase) of the Ti plasmid pTi15g55 from Agrobacterium tumefaciens (database entry X004g3 from position 12.541-12.350, Gielen et al. (ig84) EMBO J. 3835-846 ) was replaced.
Das DNA-Fragment, das die OCS-Terminatorregion beinhaltet, wurde mittels PCR unter Verwendung des Plasmides pHELLSGATE (Datenbankeintrag AJ311874, Wesley et al. (2001) Plant J. 27581-590, nach Standardmethoden aus E.coli isoliert) sowie der Primer OCS-1 (SEQ ID No. 58) und OCS-2 (SEQ ID No. 59) hergestellt.The DNA fragment which contains the OCS terminator region was PCR-isolated using the plasmid pHELLSGATE (database entry AJ311874, Wesley et al. (2001) Plant J. 27581-590, isolated from E. coli by standard methods) and the primer OCS -1 (SEQ ID No. 58) and OCS-2 (SEQ ID No. 59).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA, die die Octopin Synthase (OCS) Terminatorregion (SEQ ID No. 60) beinhaltet, erfolgte in einem 50 ul Reaktionsansatz, in dem enthalten waren: 100 ng pHELLSGATE plasmid DNA 0.25 mM dNTPs 0.2 mM OCS-1 (SEQ ID No. 58) 0.2 mM OCS-2 (SEQ ID No. 5 ) 5 ul IOX PCR-Puffer (Stratagene) 0.25 ul Pfu Polymerase (Stratagene) 28.8 ul Aq. Dest.The PCR for the amplification of the DNA, which contains the octopine synthase (OCS) terminator region (SEQ ID No. 60), was carried out in a 50 μl reaction mixture, which contained: 100 ng pHELLSGATE plasmid DNA 0.25 mM dNTPs 0.2 mM OCS-1 (SEQ ID No. 58) 0.2 mM OCS-2 (SEQ ID No. 5) 5 ul IOX PCR buffer (Stratagene) 0.25 ul Pfu polymerase (Stratagene) 28.8 ul aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94°C 2 Minuten 35X 94°C 1 Minute1X 94 ° C 2 minutes 35X 94 ° C 1 minute
50°C 1 Minute50 ° C for 1 minute
72°C 1 Minute 1X 72°C 10 Minuten72 ° C 1 minute 1X 72 ° C 10 minutes
Das 210 bp Amplifikat wurde unter Verwendung von Standardmethoden in den, PCR- Klonierungsvektor pCR 2.1 (Invitrogen) kloniert und das Plasmid pOCS erhalten.The 210 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) using standard methods and the plasmid pOCS was obtained.
Sequenzierung des Klons pOCS bestätigte eine Sequenz, die mit einem Sequenzab- schnitt auf dem Ti-Plasmid pTi15955 von Agrobacterium tumefaciens (Datenbankeintrag X00493) von Position 12.541 bis 12.350 übereinstimmt.Sequencing of the clone pOCS confirmed a sequence which corresponds to a sequence section on the Ti plasmid pTi15955 from Agrobacterium tumefaciens (database entry X00493) from positions 12,541 to 12,350.
Die Klonierung erfolgte durch Isolierung des 210 bp Sall-Xhol Fragmentes aus pOCS und Ligierung in den Sall-Xhol geschnittenen Vektor pJIT117.The cloning was carried out by isolating the 210 bp Sall-Xhol fragment from pOCS and ligation into the Sall-Xhol cut vector pJIT117.
Dieser Klon heisst pJO und wurde daher für die Klonierung in den Expressionsvektor pJONP196 verwendet.This clone is called pJO and was therefore used for the cloning into the expression vector pJONP196.
Die Klonierung erfolgte durch Isolierung des 782 Bp Sphl-Fragmentes aus pNP196 und Ligierung in den SphI geschnittenen Vektor pJO. Der Klon, der die NPig6-Ketolase von Nostoc punctiforme in der korrekten Orientierung als N-terminale translationale Fusion mit dem rbcS Transitpeptid enthält, heisst pJONP196. Beispiel 7:The cloning was carried out by isolating the 782 bp Sphl fragment from pNP196 and ligating into the SphI cut vector pJO. The clone that contains the Nostoc punctiforme NPig6 ketolase in the correct orientation as an N-terminal translational fusion with the rbcS transit peptide is called pJONP196. Example 7:
Herstellung von Expressionsvektoren zur konstitutiven Expression der NP1 gβ-Ketolase aus Nostoc punctiforme ATCC 29133 in Lycopersicon esculentum und Tagetes erecta.Production of expression vectors for the constitutive expression of NP1 gβ-ketolase from Nostoc punctiforme ATCC 29133 in Lycopersicon esculentum and Tagetes erecta.
Die Expression der NP196-Ketolase aus Nostoc punctiforme in L. esculentum und in Tagetes erecta erfolgte unter Kontrolle des konstitutiven Promoters FNR (Ferredoxin- NADPH- Oxidoreductase, Datenbankeintrag AB011474 Position 70127 bis 694g3; WO03/006660), aus Arabidopsis thallana. Das FNR-Gen beginnt bei Basenpaar 69492 und ist mit "Ferredoxin-NADP+ Reductase" annotiert. Die Expression erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al. 1986, Biochem J. 240:709-715).The expression of the NP196 ketolase from Nostoc punctiforme in L. esculentum and in Tagetes erecta was carried out under the control of the constitutive promoter FNR (ferredoxin NADPH oxidoreductase, database entry AB011474 position 70127 to 694g3; WO03 / 006660), from Arabidopsis thallana. The FNR gene begins at base pair 69492 and is annotated with "ferredoxin-NADP + reductase". Expression was carried out using the pea transit peptide rbcS (Anderson et al. 1986, Biochem J. 240: 709-715).
Das DNA Fragment, das die FNR Promotorregion aus Arabidopsis thallana beinhaltet, wurde mittels PCR unter Verwendung genomischer DNA (nach Standardmethoden aus Arabidopsis thaliana isoliert) sowie der Primer FNR-1 (SEQ ID No. 61 ) und FNR-2 (SEQ ID No. 62) hergestellt.The DNA fragment containing the FNR promoter region from Arabidopsis thallana was PCR-analyzed using genomic DNA (isolated from Arabidopsis thaliana according to standard methods) and the primers FNR-1 (SEQ ID No. 61) and FNR-2 (SEQ ID No. 62).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
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Die PCR zur Amplifikation der DNA, die das FNR-Promotorfragment FNR (SEQ ID No. 63) beinhaltet, erfolgte in einem 50 ul Reaktionsansatz, in dem enthalten war:The PCR for the amplification of the DNA, which contains the FNR promoter fragment FNR (SEQ ID No. 63), was carried out in a 50 μl reaction mixture which contained:
100 ng genomischer DNA aus A.thaliana 0.25 mM dNTPs 0.2 mM FNR-1 (SEQ ID No. 61) - 0.2 mM FNR-2 (SEQ ID No. 62) 5 ul IOX PCR-Puffer (Stratagene) 0.25 ul Pfu Polymerase (Stratagene) 28.8 ul Aq. Dest.100 ng genomic DNA from A.thaliana 0.25 mM dNTPs 0.2 mM FNR-1 (SEQ ID No. 61) - 0.2 mM FNR-2 (SEQ ID No. 62) 5 μl IOX PCR buffer (Stratagene) 0.25 μl Pfu polymerase ( Stratagene) 28.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 94°C 2 Minuten 35X g4°C 1 Minute 50°C 1 Minute 72°C 1 Minute 1X 72°C 10 Minuten1X 94 ° C 2 minutes 35X g4 ° C 1 minute 50 ° C 1 minute 72 ° C 1 minute 1X 72 ° C 10 minutes
Das 652 bp Amplifikat wurde unter Verwendung von Standardmethoden in den PCR- Klonierungsvektor pCR 2.1 (Jnvitrogen) kloniert und das Plasmid pFNR erhalten.The 652 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Jnvitrogen) using standard methods and the plasmid pFNR was obtained.
Sequenzierung des Klons pFNR bestätigte eine Sequenz, die mit einem Sequenzabschnitt auf Chromosom 5 von Arabidopsis thaliana (Datenbankeintrag AB011474) von Position 70127 bis 6g493 übereinstimmt.Sequencing of the clone pFNR confirmed a sequence which corresponds to a sequence section on chromosome 5 of Arabidopsis thaliana (database entry AB011474) from position 70127 to 6g493.
Dieser Klon heisst pFNR und wurde daher für die Klonierung in den Expressionsvektor pJONP196 (in Beispiel 6 beschrieben) verwendet.This clone is called pFNR and was therefore used for the cloning into the expression vector pJONP196 (described in Example 6).
Die Klonierung erfolgte durch Isolierung des 644 bp Smal-Hindlll Fragmentes aus pFNR und Ligierung in den Ecl136ll-Hindlll geschnittenen Vektor pJONP196. Der Klon, der den Promoter FNR anstelle des ursprünglichen Promoters d35S und das Fragment NP196 in der korrekten Orientierung als N-terminale Fusion mit dem rbcS Transitpeptid enthält, heisst pJOFNR:NP196.The cloning was carried out by isolating the 644 bp Smal-Hindlll fragment from pFNR and ligating into the Ecl136ll-Hindlll cut vector pJONP196. The clone which contains the promoter FNR instead of the original promoter d35S and the fragment NP196 in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJOFNR: NP196.
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Die Herstellung einer Expressionskassette für die Agrobacterium vermittelte Transfor- mation der NP196-Ketolase aus Nostoc in L esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO02/00g00).An expression cassette for the Agrobacterium -mediated transformation of the NP196-ketolase from Nostoc in Lesculentum was produced using the binary vector pSUN3 (WO02 / 00g00).
Zur Herstellung des Expressionsvektors MSP105 wurde das 1.83g bp EcoRI-Xhol Fragment aus pJOFNR:NPig6 mit dem EcoRI-Xhol geschnittenen Vektor pSUN3 li- giert (Abbildung 7, Konstruktkarte). In der Abbildung 7 beinhaltet Fragment FNR Promotor den FNR Promotor (635 bp), Fragment rbcS TP FRAGMENTdas rbcS Transitpeptid aus Erbse (ig4 bp), Fragment NP196 KETO CDS (761 bp), kodierend für die Nostoc punctiforme NPigβ-Ketolase , Fragment OCS Terminator W2 bp) das Polyadenylierungssignal von der Octopin- Synthase.To produce the expression vector MSP105, the 1.83g bp EcoRI-Xhol fragment from pJOFNR: NPig6 was ligated with the EcoRI-Xhol cut vector pSUN3 (Figure 7, construct map). In Figure 7 fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (ig4 bp), fragment NP196 KETO CDS (761 bp), coding for the nostoc punctiform NPigβ ketolase, fragment OCS W2 bp) the polyadenylation signal from the octopine synthase.
Die Herstellung einer Expressionskassette für die ,4groöacter/'um-vermittelte Transformation des Expressionsvektor mit der NPi β-Ketolase aus Nostoc punctiforme in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO 02/00900). Zur Herstellung des Tagetes-Expressionsvektors MSP106 wurde das 1.839 bp EcoRI- Xhol Fragment aus pJOFNR:NP196 mit dem EcoRI-Xhol geschnittenen Vektor pSUN5 ligiert (Abbildung 8, Konstruktkarte). In der Abbildung 8 beinhaltet Fragment FNR Promotor den FNR Promotor (635 bp), Fragment rbcS TP FRAGMENT das rbcS Transit- peptid aus Erbse (194 bp), Fragment NP196 KETO CDS (761 bp), kodierend für die Nostoc punctiforme NP196-Ketolase , Fragment OCS Terminator (192 bp) das Polyadenylierungssignal von Octopin-Synthase.An expression cassette for the '4groöacter / ' um-mediated transformation of the expression vector with the NPi β-ketolase from Nostoc punctiforme in Tagetes erecta was produced using the binary vector pSUN5 (WO 02/00900). To produce the Tagetes expression vector MSP106, the 1,839 bp EcoRI-Xhol fragment from pJOFNR: NP196 was ligated with the EcoRI-Xhol cut vector pSUN5 (Figure 8, construct map). In Figure 8, fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NP196 KETO CDS (761 bp), coding for the nostoc punctiform NP196 ketolase, Fragment OCS terminator (192 bp) the octopine synthase polyadenylation signal.
Beispiel 8: Herstellung von Expressionsvektoren zur blütenspezifischen Expression der NP196- Ketolase aus Nostoc punctiforme ATCC 29133 in Lycopersicon esculentum und Tagetes erectaExample 8: Production of expression vectors for the flower-specific expression of the NP196 ketolase from Nostoc punctiforme ATCC 29133 in Lycopersicon esculentum and Tagetes erecta
Die Expression der NPigβ-Ketolase aus Nostoc punctiforme in L esculentum und Ta- getes erecta erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al. 1986, Biochem J. 240:709-715). Die Expression erfolgte unter Kontrolle des blütenspezifischen Promoters EPSPS aus Petunia hybrida (Datenbankeintrag M37029: Nukleotidregion 7- 1787; Benfey et al. (1990) Plant Cell 2: 849-856).The expression of the NPigβ-ketolase from Nostoc punctiforme in Lesculentum and Tageses erecta was carried out with the transit peptide rbcS from pea (Anderson et al. 1986, Biochem J. 240: 709-715). Expression was carried out under the control of the flower-specific promoter EPSPS from Petunia hybrida (database entry M37029: nucleotide region 7-1787; Benfey et al. (1990) Plant Cell 2: 849-856).
Das DNA Fragment, das die EPSPS Promoterregion (SEQ ID No. 66) aus Petunia hybrida beinhaltet, wurde mittels PCR unter Verwendung genomischer DNA (nach Standardmethoden aus Petunia hybrida isoliert) sowie der Primer EPSPS-1 (SEQ ID No. 64) und EPSPS-2 (SEQ ID No. 65) hergestellt.The DNA fragment, which contains the EPSPS promoter region (SEQ ID No. 66) from Petunia hybrida, was PCR-analyzed using genomic DNA (isolated from Petunia hybrida according to standard methods) and the primers EPSPS-1 (SEQ ID No. 64) and EPSPS -2 (SEQ ID No. 65).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA, die das EPSPS-Promoterfragment (Datenbankeintrag M37029: Nukleotidregion 7-1787) beinhaltet, erfolgte in einem 50 μl Reaktionsansatz, in dem enthalten war:The PCR for the amplification of the DNA, which contains the EPSPS promoter fragment (database entry M37029: nucleotide region 7-1787), was carried out in a 50 μl reaction mixture which contained:
100 ng genomischer DNA aus A.thaliana100ng of A. thaliana genomic DNA
0.25 mM dNTPs0.25 mM dNTPs
0.2 mM EPSPS-1 (SEQ ID No. 64)0.2 mM EPSPS-1 (SEQ ID No. 64)
0.2 mM EPSPS-2 (SEQ ID No. 65) - 5 ul IOX PCR-Puffer (Stratagene)0.2 mM EPSPS-2 (SEQ ID No. 65) - 5 µl IOX PCR buffer (Stratagene)
0.25 ul Pfu Polymerase (Stratagene) 28.8 ul Aq. Dest.0.25 µl Pfu polymerase (Stratagene) 28.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X g4°C 2 Minuten 35X g4°C 1 Minute1X g4 ° C 2 minutes 35X g4 ° C 1 minute
50°C 1 Minute50 ° C for 1 minute
72°C 2 Minute 1X 72°C 10 Minuten72 ° C 2 minutes 1X 72 ° C 10 minutes
Das 1773 Bp Amplifikat wurde unter Verwendung von Standardmethoden in den PCR- Klonierungsvektor pCR 2.1 (Invitrogen) kloniert und das Plasmid pEPSPS erhalten.The 1773 bp amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) using standard methods and the plasmid pEPSPS was obtained.
Sequenzierung des Klons pEPSPS bestätigte eine Sequenz, die sich lediglich durch zwei Deletion (Basen ctaagtttcagga in Position 46-58 der Sequenz M3702g; Basen aaaaatat in Position 1422-142g der Sequenz M3702g) und die Basenaustausche (T statt G in Position 1447 der Sequenz M3702g; A statt C in Position 1525 der Sequenz M3702g; A statt G in Position 1627 der Sequenz M3702g) von der publizierten EPSPS- Sequenz (Datenbankeintrag M3702g: Nukleotidregion 7-1787) unterscheidet. Die zwei Deletionen and die zwei Basenaustausche an den Positionen 1447 und 1627 der Sequenz M3702g wurden in einem unabhängigen Amplifikationsexperiment reproduziert und repräsentieren somit die tatsächliche Nukleotidsequenz in den verwendeten Petunia hybrida Pflanzen.Sequencing of the clone pEPSPS confirmed a sequence consisting only of two deletions (bases ctaagtttcagga in position 46-58 of sequence M3702g; bases aaaaatat in positions 1422-142g of sequence M3702g) and the base exchanges (T instead of G in position 1447 of sequence M3702g ; A instead of C in position 1525 of sequence M3702g; A instead of G in position 1627 of sequence M3702g) differs from the published EPSPS sequence (database entry M3702g: nucleotide region 7-1787). The two deletions and the two base changes at positions 1447 and 1627 of the sequence M3702g were reproduced in an independent amplification experiment and thus represent the actual nucleotide sequence in the Petunia hybrida plants used.
Der Klon pEPSPS wurde daher für die Klonierung in den Expressionsvektor pJONPI g6 (in Beispiel 6 beschrieben) verwendet.The clone pEPSPS was therefore used for the cloning into the expression vector pJONPI g6 (described in Example 6).
Die Klonierung erfolgte durch Isolierung des 1763 Bp Sacl-Hindlll Fragmentes aus pEPSPS und Ligierung in den Sacl-Hindlll geschnittenen Vektor pJONPI 6. Der Klon, der den Promoter EPSPS anstelle des ursprünglichen Promoters d35S enthält, heisst pJOESP:NP196. Diese Expressionskassette enthält das Fragment NP196 in der korrekten Orientierung als N-terminale Fusion mit dem rbcS-Transitpeptid.The cloning was carried out by isolating the 1763 bp SacI-HindIII fragment from pEPSPS and ligation into the SacI-HindIII cut vector pJONPI 6. The clone which contains the promoter EPSPS instead of the original promoter d35S is called pJOESP: NP196. This expression cassette contains the fragment NP196 in the correct orientation as an N-terminal fusion with the rbcS transit peptide.
Die Herstellung eines Expressionsvektors für die Agrobacterium-vermittelte Transfor- mation der EPSPS-kontroilierten NP196-Ketolase aus Nostoc punctiforme ATCC 29133 in L. esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO02/00900).The production of an expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NP196 ketolase from Nostoc punctiforme ATCC 29133 in L. esculentum was carried out using the binary vector pSUN3 (WO02 / 00900).
Zur Herstellung des Expressionsvektors MSP107 wurde das 2.g61 KB bp Sacl-Xhol Fragment aus pJOESP:NP1 gβ mit dem Sacl-Xhol geschnittenen Vektor pSUN3 ligiert (Abbildung g, Konstruktkarte). In der Abbildung beinhaltet Fragment EPSPS den EPSPS Promoter (1761 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (1 g4 bp), Fragment NP196 KETO CDS (761 bp), kodierend für die Nostoc punctiforme NPigβ-Ketolase, Fragment OCS Terminator (ig2 bp) das Polyadenylie- rungssignal von Octopin-Synthase.To produce the expression vector MSP107, the 2.g61 KB bp Sacl-Xhol fragment from pJOESP: NP1 gβ was ligated with the Sacl-Xhol cut vector pSUN3 (Figure g, construct map). In the figure, fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (1 g4 bp), fragment NP196 KETO CDS (761 bp), coding for the Nostoc punctiform NPigβ-ketolase, fragment OCS terminator (ig2 bp) the polyadenylation signal of octopine synthase.
Die Herstellung einer Expressionsvektors für die Agrobacterium-vermittelte Transformation der EPSPS-kontrollierten NP196-Ketolase aus Nostoc punctiforme in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO02/00g00).An expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NP196 ketolase from Nostoc punctiforme in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00g00).
Zur Herstellung des Expressionsvektors MSP108 wurde das 2.g61 KB bp Sacl-Xhol Fragment aus pJOESP:NPig6 mit dem Sacl-Xhol geschnittenen Vektor pSUN5 ligiertTo produce the expression vector MSP108, the 2.g61 KB bp Sacl-Xhol fragment from pJOESP: NPig6 was ligated to the Sacl-Xhol cut vector pSUN5
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(Abbildung 10, Konstruktkarte). In der Abbildung 10 beinhaltet Fragment EPSPS den EPSPS Promoter (1761 bp), Fragment rbcS TP FRAGMENTdas rbcS Transitpeptid aus Erbse (1 4 bp), Fragment NP196 KETO CDS (761 bp), kodierend für die Nostoc punctiforme NPigβ-Ketolase , Fragment OCS Terminator (192 bp) das Polyadenylierungssignal von Octopin-Synthase.(Figure 10, construct card). In Figure 10, fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (1 4 bp), fragment NP196 KETO CDS (761 bp), coding for the Nostoc punctiform NPigβ ketolase, fragment OCS terminator (192 bp) the polyadenylation signal of octopine synthase.
Beispiel g: Amplifikation einer DNA, die die gesamte Primärsequenz der NP1 g5-Ketolase aus Nostoc punctiforme ATCC 29133 kodiertExample g: Amplification of a DNA encoding the entire primary sequence of the NP1 g5 ketolase from Nostoc punctiforme ATCC 29133
Die DNA, die für die NPi δ-Ketolase aus Nostoc punctiforme ATCC 29133 ' kodiert, wurde mittels PCR aus Nostoc punctiforme ATCC 29133 (Stamm der "American Type Culture Collection") amplifiziert. Die Präparation von genomischer DNA aus einer Suspensionskultur von Nostoc punctiforme ATCC 29133 wurde in Beispiel 19 beschrieben.The DNA coding for the NPi δ-ketolase from Nostoc punctiform ATCC 29133 'was amplified by PCR from Nostoc punctiform ATCC 29133 (strain of the "American Type Culture Collection"). The preparation of genomic DNA from a suspension culture of Nostoc punctiforme ATCC 29133 was described in Example 19.
Die Nukleinsäure, kodierend eine Ketolase aus Nostoc punctiforme ATCC 29133, wurde mittels "polymerase chain reaction" (PCR) aus Nostoc punctiforme ATCC 29133 unter Verwendung eines sense-spezifischen Primers (NP195-1 , SEQ ID No. 67) und eines antisense-spezifischen Primers (NPig5-2 SEQ ID No. 68) amplifiziert. Die PCR-Bedingungen waren die folgenden:The nucleic acid encoding a Nostoc punctiform ATCC 29133 ketolase was synthesized by means of a "polymerase chain reaction" (PCR) from Nostoc punctiform ATCC 29133 using a sense-specific primer (NP195-1, SEQ ID No. 67) and an antisense-specific one Primers (NPig5-2 SEQ ID No. 68) amplified. The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA, die für ein Ketolase Protein bestehend aus der gesamten Primärsequenz kodiert, erfolgte in einem 50 ul Reaktionsansatz, in dem ent- halten war:The PCR for the amplification of the DNA, which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 μl reaction mixture, which contained:
1 ul einer Nostoc punctiforme ATCC 29133 DNA (hergestellt wie oben beschrieben)1 µl of a Nostoc punctiform ATCC 29133 DNA (prepared as described above)
0.25 mM dNTPs - 0.2 mM NPig5-1 (SEQ ID No. 67) 0.2 mM NP105-2 (SEQ ID No. 68) 5 ul 10X PCR-Puffer (TAKARA) 0.25 ul R Taq Polymerase (TAKARA) 25.8 ul Aq. Dest.0.25 mM dNTPs - 0.2 mM NPig5-1 (SEQ ID No. 67) 0.2 mM NP105-2 (SEQ ID No. 68) 5 ul 10X PCR buffer (TAKARA) 0.25 ul R Taq Polymerase (TAKARA) 25.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X g4°C 2 Minuten1X g4 ° C 2 minutes
35X 94°C 1 Minute 55°C 1 Minuten35X 94 ° C 1 minute 55 ° C 1 minute
72°C 3 Minuten 1 X 72°C 10 Minuten72 ° C 3 minutes 1 X 72 ° C 10 minutes
Die PCR-Amplifikation mit SEQ ID No. 67 und SEQ ID No. 68 resultierte in einem 819 Bp-Fragment, das für ein Protein bestehend aus der gesamten Primärsequenz kodiert (NP195, SEQ ID No. 69). Unter Verwendung von Standardmethoden wurde das Amplifikat in den PCR-Klonierungsvektor pCR 2.1 (Invitrogen) kloniert und der Klon pNP195 erhalten.PCR amplification with SEQ ID No. 67 and SEQ ID No. 68 resulted in an 819 bp fragment coding for a protein consisting of the entire primary sequence (NP195, SEQ ID No. 69). Using standard methods, the amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) and the clone pNP195 was obtained.
Sequenzierung des Klons pNPi δ mit dem M13F- und dem M13R-Primer bestätigte eine Sequenz, welche mit der DNA-Sequenz von 55,604-56,3g2 des Datenbankeintrages NZ_AABC010001065 identisch ist, mit der Ausnahme, daß T in Position 55.604 durch A ersetzt wurde, um ein Standard-Startkodon ATG zu erzeugen. Diese Nukleotidsequenz wurde in einem unabhängigem Amplifikationsexperiment reprodu- ziert und repräsentiert somit die Nukleotidsequenz im verwendeten Nostoc punctiforme ATCC 29133.Sequencing of the clone pNPi δ with the M13F and M13R primers confirmed a sequence which is identical to the DNA sequence of 55.604-56.3g2 of the database entry NZ_AABC010001065, with the exception that T in position 55.604 was replaced by A, to create a standard start codon ATG. This nucleotide sequence was reproduced in an independent amplification experiment. graces and represents the nucleotide sequence in the used Nostoc punctiform ATCC 29133.
Dieser Klon pNP105 wurde daher für die Klonierung in den Expressionsvektor pJO (in Beispiel 6 beschrieben) verwendet. Die Klonierung erfolgte durch Isolierung des 800 Bp Sphl-Fragmentes aus pNPigs und Ligierung in den SphI geschnittenen Vektor pJO. Der Klon, der die NPigδ-Ketolase von Nostoc punctiforme in der korrekten Orientierung als N-terminale translationale Fusion mit dem rbcS Transitpeptid enthält, heisst pJONPI 95.This clone pNP105 was therefore used for the cloning into the expression vector pJO (described in Example 6). The cloning was carried out by isolating the 800 bp Sphl fragment from pNPigs and ligation into the SphI cut vector pJO. The clone which contains the NPigδ ketolase from Nostoc punctiforme in the correct orientation as an N-terminal translational fusion with the rbcS transit peptide is called pJONPI 95.
Beispiel 10:Example 10:
Herstellung von Expressionsvektoren zur konstitutiven Expression der NP195-Ketolase aus Nostoc punctiforme ATCC 29133 in Lycopersicon esculentum und Tagetes erecta.Production of expression vectors for the constitutive expression of NP195-ketolase from Nostoc punctiforme ATCC 29133 in Lycopersicon esculentum and Tagetes erecta.
Die Expression der NP195-Ketolase aus Nostoc punctiforme in L. esculentum und in Tagetes erecta erfolgte unter Kontrolle des konstitutiven Promoters FNR (Ferredoxin- NADPH-Oxidoreductase, Datenbankeintrag AB011474 Position 70127 bis 69493; WO03/006660), aus Arabidopsis thallana. Das FNR-Gen beginnt bei Basenpaar 694g2 und ist mit "Ferredoxin-NADP+ Reductase" annotiert. Die Expression erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al. 1086, Biochem J. 240:700-715).The expression of the NP195 ketolase from Nostoc punctiforme in L. esculentum and in Tagetes erecta was carried out under the control of the constitutive promoter FNR (ferredoxin NADPH oxidoreductase, database entry AB011474 position 70127 to 69493; WO03 / 006660), from Arabidopsis thallana. The FNR gene begins at base pair 694g2 and is annotated with "ferredoxin-NADP + reductase". Expression was carried out using the pea transit peptide rbcS (Anderson et al. 1086, Biochem J. 240: 700-715).
Der Klon pFNR (in Beispiel 7 beschrieben) wurde daher für die Klonierung in den Expressionsvektor pJONPI 05 (in Beispiel 10 beschrieben) verwendet.The clone pFNR (described in Example 7) was therefore used for the cloning into the expression vector pJONPI 05 (described in Example 10).
Die Klonierung erfolgte durch Isolierung des 644 bp Sma-Hindlll Fragmentes aus pFNR und Ligierung in den Ecl136ll-Hindlll geschnittenen Vektor pJONPI 05. Der Klon, der den Promoter FNR anstelle des ursprünglichen Promoters d35S und das Fragment NPi δ in der korrekten Orientierung als N-terminale Fusion mit dem rbcS Transitpeptid enthält, heisst pJOFNR:NP195.The cloning was carried out by isolating the 644 bp Sma-Hindlll fragment from pFNR and ligating into the Ecl136ll-Hindlll cut vector pJONPI 05. The clone which contained the promoter FNR instead of the original promoter d35S and the fragment NPi δ in the correct orientation as contains terminal fusion with the rbcS transit peptide is called pJOFNR: NP195.
Die Herstellung einer Expressionskassette für die Agrobacterium vermittelte Transformation der NP195-Ketolase aus Nostoc punctiforme in L esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO02/00000).An expression cassette for the Agrobacterium-mediated transformation of the NP195 ketolase from Nostoc punctiforme into lesculentum was produced using the binary vector pSUN3 (WO02 / 00000).
Zur Herstellung des Expressionsvektors MSP100 wurde das 1.866 bp EcoRI-Xhol Fragment aus pJOFNR:NPi 5 mit dem EcoRI-Xhol geschnittenen Vektor pSUN3 li- giert (Abbildung 11 , Konstruktkarte). In "der Abbildung 11 beinhaltet Fragment FNR Promotor den FNR Promotor (635 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (104 bp), Fragment NP195 KETO CDS (78g bp), kodierend für die Nostoc punctiforme NPi δ-Ketolase, Fragment OCS Terminator (192 bp) das Polya- denylierungssignal von der Octopin- Synthase.To produce the expression vector MSP100, the 1,866 bp EcoRI-Xhol fragment from pJOFNR: NPi 5 was cut with the EcoRI-Xhol vector pSUN3 li greed (Figure 11, construct card). In "Figure 11 fragment FNR promoter the FNR promoter (635 bp) fragment rbcS TP FRAGMENT the rbcS transit peptide of pea (104 bp) fragment NP195 KETO CDS (78g bp), coding for the Nostoc punctiforme NPi δ-ketolase Fragment OCS terminator (192 bp) the polyadenylation signal from the octopine synthase.
Die Herstellung einer Expressionskassette für die /.grobacfer/um-vermittelte Transformation des Expressionsvektor mit der NPigδ-Ketolase aus Nostoc punctiforme punctiforme in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO 02/00000).An expression cassette for the /.grobacfer/um -mediated transformation of the expression vector with the NPigδ-ketolase from Nostoc punctiforme punctiforme in Tagetes erecta was carried out using the binary vector pSUN5 (WO 02/00000).
Zur Herstellung des Tagetes-Expressionsvektors MSP110 wurde das 1.866 bp EcoRI- Xhol Fragment aus pJOFNR:NP105 mit dem EcoRI-Xhol geschnittenen Vektor pSUN5 ligiert (Abbildung 12, Konstruktkarte). In der Abbildung 12 beinhaltet Fragment FNR Promotor den FNR Promotor (635 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (194 bp), Fragment NP195 KETO CDS (78g bp), kodierend für die Nostoc punctiforme NPi gδ-Ketolase, Fragment OCS Terminator (ig2 bp) das Polyadenylierungssignal von Octopin-Synthase.To produce the Tagetes expression vector MSP110, the 1,866 bp EcoRI-Xhol fragment from pJOFNR: NP105 was ligated with the EcoRI-Xhol cut vector pSUN5 (Figure 12, construct map). In Figure 12 fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NP195 KETO CDS (78g bp), coding for the nostoc punctiform NPi gδ-ketolase, fragment OCS terminator (ig2 bp) the polyadenylation signal of octopine synthase.
Beispiel 11 :Example 11:
Herstellung von Expressionsvektoren zur blütenspezifischen Expression der NP195- Ketolase aus Nostoc punctiforme ATCC 2gi33 in Lycopersicon esculentum und Tagetes erecta.Production of expression vectors for the flower-specific expression of the NP195 ketolase from Nostoc punctiform ATCC 2gi33 in Lycopersicon esculentum and Tagetes erecta.
Die Expression der NP1 g5-Ketolase aus Nostoc punctiforme in L. esculentum und Tagetes erecta erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al. ig86, Biochem J. 240:700-715). Die Expression erfolgte unter Kontrolle des blütenspezifischen Promoters EPSPS aus Petunia hybrida (Datenbankeintrag M37020: Nukleotidregion 7- 1787; Benfey et al. (1990) Plant Cell 2: 840-856).The expression of the NP1 g5 ketolase from Nostoc punctiforme in L. esculentum and Tagetes erecta was carried out with the transit peptide rbcS from pea (Anderson et al. Ig86, Biochem J. 240: 700-715). The expression was carried out under the control of the flower-specific promoter EPSPS from Petunia hybrida (database entry M37020: nucleotide region 7-1787; Benfey et al. (1990) Plant Cell 2: 840-856).
Der Klon pEPSPS (in Beispiel 8 beschrieben) wurde daher für die Klonierung in den Expressionsvektor pJONPI 95 (in Beispiel 10 beschrieben) verwendet.The clone pEPSPS (described in Example 8) was therefore used for the cloning into the expression vector pJONPI 95 (described in Example 10).
Die Klonierung erfolgte durch Isolierung des 1763 Bp Sacl-Hindlll Fragmentes aus pEPSPS und Ligierung in den Sacl-Hindlll geschnittenen Vektor pJONPI 05. Der Klon, der den Promoter EPSPS anstelle des ursprünglichen Promoters d35S enthält, heisst pJOESP:NPig5. Diese Expressionskassette enthält das Fragment NPi δ in der korrekten Orientierung als N-terminale Fusion mit dem rbcS-Transitpeptid.The cloning was carried out by isolating the 1763 bp SacI-HindIII fragment from pEPSPS and ligation into the SacI-HindIII cut vector pJONPI 05. The clone, which contains the promoter EPSPS instead of the original promoter d35S, is called pJOESP: NPig5. This expression cassette contains the fragment NPi δ in the correct orientation as an N-terminal fusion with the rbcS transit peptide.
Die Herstellung eines Expressionsvektors für die Agrobacterium-vermittelte Transfor- mation der EPSPS-kontrollierten NP195-Ketolase aus Nostoc punctiforme ATCC 2gi33 in L. esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO 02/00000).An expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NP195 ketolase from Nostoc punctiforme ATCC 2gi33 in L. esculentum was produced using the binary vector pSUN3 (WO 02/00000).
Zur Herstellung des Expressionsvektors MSP111 wurde das 2.088 KB bp Sacl-Xhol Fragment aus pJOESP:NP105 mit dem Sacl-Xhol geschnittenen Vektor pSUN3 ligiert (Abbildung 13, Konstruktkarte). In der Abbildung 13 beinhaltet Fragment EPSPS den EPSPS Promoter (1761 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (194 bp), Fragment NP195 KETO CDS (789 bp), kodierend für die Nostoc punctiforme NPigδ-Ketolase, Fragment OCS Terminator (192 bp) das Polyadenylie- rungssignal von Octopin-Synthase.To produce the expression vector MSP111, the 2,088 KB bp Sacl-Xhol fragment from pJOESP: NP105 was ligated with the Sacl-Xhol cut vector pSUN3 (Figure 13, construct map). In Figure 13, fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NP195 KETO CDS (789 bp), coding for the Nostoc punctiform NPigδ-ketolase, fragment OCS terminator (192 bp) the polyadenylation signal of octopine synthase.
Die Herstellung einer Expressionsvektors für die Agrobacterium-vermittelte Transformation der EPSPS-kontrollierten NPigδ-Ketolase aus Nostoc punctiforme in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO02/00Θ00).An expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NPigδ-ketolase from Nostoc punctiforme in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00Θ00).
Zur Herstellung des Expressionsvektors MSP112 wurde das 2.088 KB bp Sacl-Xhol Fragment aus pJOESP:NP195 mit dem Sacl-Xhol geschnittenen Vektor pSUN5 ligiert (Abbildung 14, Konstruktkarte). In der Abbildung 14 beinhaltet Fragment EPSPS den EPSPS Promoter (1761 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (1 g4 bp), Fragment NP195 KETO CDS (78g bp), kodierend für die Nostoc punctiforme NPigδ-Ketolase, Fragment OCS Terminator (192 bp) das Polyadenylierungssignal von Octopin-Synthase.To produce the expression vector MSP112, the 2,088 KB bp Sacl-Xhol fragment from pJOESP: NP195 was ligated with the Sacl-Xhol cut vector pSUN5 (Figure 14, construct map). In Figure 14 fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (1 g4 bp), fragment NP195 KETO CDS (78g bp), coding for the Nostoc punctiform NPigδ-ketolase, fragment OCS Terminator (192 bp) the polyadenylation signal of octopine synthase.
Beispiel 12: Amplifikation einer DNA, die die gesamte Primärsequenz der NODK-Ketolase aus No- dularia spumignea Λ/SOft 70 codiert.Example 12: Amplification of a DNA encoding the entire primary sequence of the NODK ketolase from Noularia spumignea Λ / SOft 70.
Die DNA, die für die Ketolase aus Nodularia spumignea NSOR 10 kodiert, wurde mittels PCR aus Nodularia spumignea NSOR10 amplifiziert. Für die Präparation von genomischer DNA aus einer Suspensionskultur von Nodularia spumignea NSOR10 , d\e 1 Woche mit Dauerlicht und konstantem Schütteln (150 rpm) at 25°C in BG 77-Medium (1.5 g/l NaN03, 0.04 g/l K2P04x3H20, 0.075 g/l MgS04xH2O, 0.036 g/l CaCI2x2H2O, 0.006 g/l citric acid, 0.006 g/l Ferric ammonium citrate, 0.001 g/l EDTA disodium magnesium, 0.04 g/l Na2CO3, 1ml Trace Metal Mix "A5+Co" (2.86 g/l H3BO3, 1.81 g/l MnCI2x4H2o, 0.222 g/l ZnSO4x7H20, 0.30 g/l NaMoO4X2H2o, 0.070 g/l CuSO4x5H2O, 0.0404 g/l Co(NO3)2x6H2O) gewachsen war, wurden die Zellen durch Zentrifugation geerntet, in flüssigem Stickstoff eingefroren und im Mörser pulverisiert.The DNA encoding the ketolase from Nodularia spumignea NSOR 10 was amplified by PCR from Nodularia spumignea NSOR10. For the preparation of genomic DNA from a suspension culture of Nodularia spumignea NSOR10, d \ e 1 week with continuous light and constant shaking (150 rpm) at 25 ° C in BG 77 medium (1.5 g / l NaN0 3 , 0.04 g / l K 2 P0 4 x3H 2 0, 0.075 g / l MgS0 4 xH 2 O, 0.036 g / l CaCI 2 x2H 2 O, 0.006 g / l citric acid, 0.006 g / l Ferric ammonium citrate, 0.001 g / l EDTA disodium magnesium, 0.04 g / l Na 2 CO 3 , 1 ml trace metal mix "A5 + Co" (2.86 g / l H 3 BO 3 , 1.81 g / l MnCI 2 x4H 2 o, 0.222 g / l ZnSO 4 x7H 2 0, 0.30 g / l NaMoO 4 X2H 2 o, 0.070 g / l CuSO 4 x5H 2 O, 0.0404 g / l Co (NO 3 ) 2 x6H 2 O), the cells were harvested by centrifugation, frozen in liquid nitrogen and pulverized in a mortar ,
Protokoll für die DNA-Isolation aus Nodularia spumignea NSOR10 :Protocol for DNA isolation from Nodularia spumignea NSOR10:
Aus einer 10 ml Flüssigkultur wurden die Bakterienzellen durch 10 minütige Zentrifugation bei 8000 rpm pelletiert. Anschließend wurden die Bakterienzellen in flüssigem Stickstoff mit einem Mörser zerstoßen und gemahlen. Das Zellmaterial wurde in 1 ml 10mM Tris HCI (pH 7.5) resuspendiert und in ein Eppendorf-Reaktionsgefäß (2ml Volumen) überführt. Nach Zugabe von 100 μl Proteinase K (Konzentration: 20 mg/ml) wurde die Zellsuspension für 3 Stunden bei 37°C inkubiert. Anschließend wurde dieThe bacterial cells were pelleted from a 10 ml liquid culture by centrifugation at 8000 rpm for 10 minutes. The bacterial cells were then crushed and ground in liquid nitrogen using a mortar. The cell material was resuspended in 1 ml of 10 mM Tris HCl (pH 7.5) and transferred to an Eppendorf reaction vessel (2 ml volume). After adding 100 μl Proteinase K (concentration: 20 mg / ml), the cell suspension was incubated for 3 hours at 37 ° C. Then the
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Suspension mit 500 μl Phenol extrahiert. Nach δminütiger Zentrifugation bei 13000 upm wurde die obere, wässrige Phase in ein neues 2 ml-Eppendorf-Reaktionsgefäß überführt. Die Extraktion mit Phenol wurde 3mal wiederholt. Die DNA wurde durch Zugabe von 1/10 Volumen 3 M Natriumacetat (pH 5.2) und 0.6 Volumen Isopropanol gefällt und anschließend mit 70% Ethanol gewaschen. Das DNA-Pellet wurde bei Raumtemperatur getrocknet, in 25 μl Wasser aufgenommen und unter Erhitzung auf 65°C gelöst.Suspension extracted with 500 ul phenol. After centrifugation at 13,000 rpm for δ minutes, the upper, aqueous phase was transferred to a new 2 ml Eppendorf reaction vessel. The extraction with phenol was repeated 3 times. The DNA was precipitated by adding 1/10 volume of 3 M sodium acetate (pH 5.2) and 0.6 volume of isopropanol and then washed with 70% ethanol. The DNA pellet was dried at room temperature, taken up in 25 μl of water and dissolved with heating to 65 ° C.
Die Nukleinsäure, kodierend eine Ketolase aus Nodularia spumignea NSOR10, wurde mittels "polymerase chain reaction" (PCR) aus Nodularia spumignea NSOR10 unter Verwendung eines sense-spezifischen Primers (NODK-1, SEQ ID No. 71) und eines antisense-spezifischen Primers (NODK-2 SEQ ID No. 72) amplifiziert.The nucleic acid encoding a ketolase from Nodularia spumignea NSOR10 was determined by means of a "polymerase chain reaction" (PCR) from Nodularia spumignea NSOR10 using a sense-specific primer (NODK-1, SEQ ID No. 71) and an antisense-specific primer ( NODK-2 SEQ ID No. 72).
Die PCR-Bedingungen waren die folgenden:The PCR conditions were as follows:
Die PCR zur Amplifikation der DNA, die für ein Ketolase Protein bestehend aus der gesamten Primärsequenz kodiert, erfolgte in einem 50 ul Reaktionsansatz, in dem ent- halten war: 1 ul einer Nodularia spumignea NSOR10 DNA (hergestellt wie oben beschrieben)The PCR for the amplification of the DNA, which codes for a ketolase protein consisting of the entire primary sequence, was carried out in a 50 μl reaction mixture, which contained: 1 ul of a Nodularia spumignea NSOR10 DNA (prepared as described above)
0.25 mM dNTPs0.25 mM dNTPs
0.2 mM NODK-1 (SEQ ID No. 71) - 0.2 mM NODK-2 (SEQ ID No. 72) 5 ul 10X PCR-Puffer (TAKARA) 0.25 ul R Taq Polymerase (TAKARA) 25.8 ul Aq. Dest.0.2 mM NODK-1 (SEQ ID No. 71) - 0.2 mM NODK-2 (SEQ ID No. 72) 5 ul 10X PCR buffer (TAKARA) 0.25 ul R Taq polymerase (TAKARA) 25.8 ul Aq. Least.
Die PCR wurde unter folgenden Zyklusbedingungen durchgeführt:The PCR was carried out under the following cycle conditions:
1X 04°C 2 Minuten 35X g4°C 1 Minute 55°C 1 Minuten 72°C 3 Minuten1X 04 ° C 2 minutes 35X g4 ° C 1 minute 55 ° C 1 minutes 72 ° C 3 minutes
1 X 72°C 10 Minuten1 X 72 ° C 10 minutes
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Die PCR-Amplifikation mit SEQ ID No. 71 und SEQ ID No. 72 resultierte in einem 720 Bp-Fragment, das für ein Protein bestehend aus der gesamten Primärsequenz kodiert (NODK, SEQ ID No. 73). Unter Verwendung von Standardmethoden wurde das Amplifikat in den PCR-Klonierungsvektor pCR 2.1 (Invitrogen) kloniert und der Klon pNODK erhalten.PCR amplification with SEQ ID No. 71 and SEQ ID No. 72 resulted in a 720 bp fragment coding for a protein consisting of the entire primary sequence (NODK, SEQ ID No. 73). Using standard methods, the amplificate was cloned into the PCR cloning vector pCR 2.1 (Invitrogen) and the clone pNODK was obtained.
Sequenzierung des Klons pNODK mit dem M13F- und dem M13R-Primer bestätigte eine Sequenz, welche mit der DNA-Sequenz von 2130-2810 des Datenbank-eintrages AY210783 identisch ist (inverse orientiert zum veröffentlichen Datenbankeintrag). Diese Nukleotidsequenz wurde in einem unabhängigem Amplifikationsexperiment reproduziert und repräsentiert somit die Nukleotidsequenz im verwendeten Nodularia spumignea NSOR10.Sequencing of the clone pNODK with the M13F and M13R primers confirmed a sequence which is identical to the DNA sequence from 2130-2810 of the database entry AY210783 (inverse to the published database entry). This nucleotide sequence was reproduced in an independent amplification experiment and thus represents the nucleotide sequence in the Nodularia spumignea NSOR10 used.
Dieser Klon pNODK wurde daher für die Klonierung in den Expressionsvektor pJO (in Beispiel 6 beschrieben) verwendet. Die Klonierung erfolgte durch Isolierung des 710 Bp Sphl-Fragmentes aus pNODK und Ligierung in den SphI geschnittenen Vektor pJO. Der Klon, der die NODK-Ketolase von Nodularia spumignea in der korrekten Orientie- rung als N-terminale translationale Fusion mit dem rbcS Transitpeptid enthält, heisst pJONODK.This clone pNODK was therefore used for the cloning into the expression vector pJO (described in Example 6). The cloning was carried out by isolating the 710 bp Sphl fragment from pNODK and ligation into the SphI-cut vector pJO. The clone that shows the NODK ketolase from Nodularia spumignea in the correct orientation contains as an N-terminal translational fusion with the rbcS transit peptide is called pJONODK.
Beispiel 13: Herstellung von Expressionsvektoren zur konstitutiven Expression der NODK-Ketolase aus Nodularia spumignea NSOR10 in Lycopersicon esculentum und Tagetes erecta.Example 13: Production of expression vectors for the constitutive expression of the NODK ketolase from Nodularia spumignea NSOR10 in Lycopersicon esculentum and Tagetes erecta.
Die Expression der NODK-Ketolase aus Nodularia spumignea NSOR10 in L. esculentum und in Tagetes erecta erfolgte unter Kontrolle des konstitutiven Promoters FNR (Ferredoxin-NADPH- Oxidoreductase, Datenbankeintrag AB011474 Position 70127 bis 60403; WO03/006660), aus Arabidopsis thallana. Das FNR-Gen beginnt bei Basenpaar 604g2 und ist mit "Ferredoxin-NADP+ Reductase" annotiert. Die Expression erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al. ig86, Biochem J. 240:700-715).The expression of the NODK ketolase from Nodularia spumignea NSOR10 in L. esculentum and in Tagetes erecta was carried out under the control of the constitutive promoter FNR (ferredoxin-NADPH-oxidoreductase, database entry AB011474 position 70127 to 60403; WO03 / 006660) from Arabidopsis thall. The FNR gene begins at base pair 604g2 and is annotated with "ferredoxin-NADP + reductase". Expression was carried out using the pea transit peptide rbcS (Anderson et al. Ig86, Biochem J. 240: 700-715).
Der Klon pFNR (in Beispiel 7 beschrieben) wurde daher für die Klonierung in den Expressionsvektor pJONODK (in Beispiel 12 beschrieben) verwendet.The clone pFNR (described in Example 7) was therefore used for the cloning into the expression vector pJONODK (described in Example 12).
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Die Klonierung erfolgte durch Isolierung des 644 bp Sma-Hindlll Fragmentes aus pFNR und Ligierung in den Ecl136ll-Hindlll geschnittenen Vektor pJONODK. Der Klon, der den Promoter FNR anstelle des ursprünglichen Promoters d35S und das Fragment NODK in der korrekten Orientierung als N-terminale Fusion mit dem rbcS Transitpeptid enthält, heisst pJOFNR:NODK.The cloning was carried out by isolating the 644 bp Sma-HindIII fragment from pFNR and ligating into the Ecl136II-HindIII cut vector pJONODK. The clone which contains the promoter FNR instead of the original promoter d35S and the fragment NODK in the correct orientation as an N-terminal fusion with the rbcS transit peptide is called pJOFNR: NODK.
Die Herstellung einer Expressionskassette für die Agrobacterium vermittelte Transformation der NODK-Ketolase aus Nodularia spumignea NSOR10 in L. esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO02/00Θ00).An expression cassette for the Agrobacterium-mediated transformation of the NODK ketolase from Nodularia spumignea NSOR10 into L. esculentum was produced using the binary vector pSUN3 (WO02 / 00Θ00).
Zur Herstellung des Expressionsvektors MSP113 wurde das 1.767 bp EcoRI-Xhol Fragment aus pJOFNR:NODK mit dem EcoRI-Xhol geschnittenen Vektor pSUN3 ligiert (Abbildung 15, Konstruktkarte). In der Abbildung 15 beinhaltet Fragment FNR Promotor den FNR Promotor (635 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (104 bp), Fragment NODK KETO CDS (600 bp), kodierend für die Nodularia spumignea NSOR10 NODK-Ketolase, Fragment OCS Terminator (102 bp) das Polya- denylierungssignal von der Octopin- Synthase. Die Herstellung einer Expressionskassette für die /4grobactet/um-vermittelte Transformation des Expressionsvektor mit der NODK-Ketolase aus Nodularia spumignea NSOR10 punctiforme in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO02/00900).To produce the expression vector MSP113, the 1,767 bp EcoRI-Xhol fragment from pJOFNR: NODK was ligated with the EcoRI-Xhol cut vector pSUN3 (Figure 15, construct map). In Figure 15, fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (104 bp), fragment NODK KETO CDS (600 bp), coding for the Nodularia spumignea NSOR10 NODK ketolase, fragment OCS terminator (102 bp) the polyadenylation signal from the octopine synthase. An expression cassette for the / 4grobactet / um-mediated transformation of the expression vector with the NODK ketolase from Nodularia spumignea NSOR10 punctiforme in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00900).
Zur Herstellung des Tagetes- Expressionsvektors MSP114 wurde das 1.767 bp EcoRI- Xhol Fragment aus pJOFNR:NODK mit dem EcoRI-Xhol geschnittenen Vektor pSUN5 ligiert (Abbildung 16, Konstruktkarte). In der Abbildung 16 beinhaltet Fragment FNR Promotor den FNR Promotor (635 bp), Fragment rbcS TP FRAGMENT das rbcS Tran- sitpeptid aus Erbse (194 bp), Fragment NODK KETO CDS (6gθ bp), kodierend für die Nodularia spumignea NSOR10 NODK-Ketolase, Fragment OCS Terminator (102 bp) das Polyadenylierungssignal von Octopin-Synthase.To produce the Tagetes expression vector MSP114, the 1,767 bp EcoRI-Xhol fragment from pJOFNR: NODK was ligated with the EcoRI-Xhol cut vector pSUN5 (Figure 16, construct map). In Figure 16, fragment FNR promoter contains the FNR promoter (635 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NODK KETO CDS (6gθ bp), coding for the Nodularia spumignea NSOR10 NODK ketolase , Fragment OCS terminator (102 bp) the polyadenylation signal of octopine synthase.
Beispiel 14: Herstellung von Expressionsvektoren zur blütenspezifischen Expression der NODK- Ketolase aus Nodularia spumignea NSORW ln Lycopersicon esculentum und Tagetes erecta.Example 14: Production of expression vectors for the flower-specific expression of the NODK ketolase from Nodularia spumignea NSORW in Lycopersicon esculentum and Tagetes erecta.
Die Expression der NODK-Ketolase aus Nodularia spumignea NSOR10 \n L. esculen- tum und Tagetes erecta erfolgte mit dem Transitpeptid rbcS aus Erbse (Anderson et al: 1086, Biochem J. 240:709-715). Die Expression erfolgte unter Kontrolle des blütenspezifischen Promoters EPSPS aus Petunia hybrida (Datenbankeintrag M37029: Nukleotidregion 7-1787; Benfey et al. (1990) Plant Cell 2: 840-856).The NODK ketolase from Nodularia spumignea NSOR10 \ n L. esculenum and Tagetes erecta was expressed with the transit peptide rbcS from pea (Anderson et al: 1086, Biochem J. 240: 709-715). The expression was carried out under the control of the flower-specific promoter EPSPS from Petunia hybrida (database entry M37029: nucleotide region 7-1787; Benfey et al. (1990) Plant Cell 2: 840-856).
Der Klon pEPSPS (in Beispiel 8 beschrieben) wurde daher für die Klonierung in den Expressionsvektor pJONODK (in Beispiel 12 beschrieben) verwendet.The clone pEPSPS (described in Example 8) was therefore used for the cloning into the expression vector pJONODK (described in Example 12).
Die Klonierung erfolgte durch Isolierung des 1763 Bp Sacl-Hindlll Fragmentes aus pEPSPS und Ligierung in den Sacl-Hindlll geschnittenen Vektor pJONODK. Der Klon, der den Promoter EPSPS anstelle des ursprünglichen Promoters d35S enthält, heisst pJOESP:NODK. Diese Expressionskassette enthält das Fragment NODK in der korrekten Orientierung als N-terminale Fusion mit dem rbcS-Transitpeptid.The cloning was carried out by isolating the 1763 bp SacI-HindIII fragment from pEPSPS and ligation into the SacI-HindIII cut vector pJONODK. The clone that contains the promoter EPSPS instead of the original promoter d35S is called pJOESP: NODK. This expression cassette contains the fragment NODK in the correct orientation as an N-terminal fusion with the rbcS transit peptide.
Die Herstellung eines Expressionsvektors für die Agrobacterium-vermittelte Transfor- mation der EPSPS-kontrollierten NODK-Ketolase aus Nodularia spumignea NSOR10 in L. esculentum erfolgte unter der Verwendung des binären Vektors pSUN3 (WO 02/00000).The production of an expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NODK ketolase from Nodularia spumignea NSOR10 in L. esculentum was carried out using the binary vector pSUN3 (WO 02/00000).
Zur Herstellung des Expressionsvektors MSP115 wurde das 2.889 KB bp Sacl-Xhol Fragment aus pJOESP:NODK mit dem Sacl-Xhol geschnittenen Vektor pSUN3 ligiert (Abbildung 17, Konstruktkarte). In der Abbildung 17 beinhaltet Fragment EPSPS den EPSPS Promoter (1761 bp), Fragment rbcS TP FRAGMENT das rbcS Transitpeptid aus Erbse (194 bp), Fragment NODK KETO CDS (690 bp), kodierend für die Nodularia spumignea NSOR 10 NODK-Ketolase, Fragment OCS Terminator (102 bp) das Polya- denylierungssignal von Octopin-Synthase.To produce the expression vector MSP115, the 2,889 KB bp Sacl-Xhol fragment from pJOESP: NODK was ligated with the Sacl-Xhol cut vector pSUN3 (Figure 17, construct map). In Figure 17, fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT the rbcS transit peptide from pea (194 bp), fragment NODK KETO CDS (690 bp), coding for the Nodularia spumignea NSOR 10 NODK ketolase, fragment OCS terminator (102 bp) the polyadenylation signal of octopine synthase.
Die Herstellung einer Expressionsvektors für die Agrobacterium-vermittelte Transformation der EPSPS-kontrollierten NODK-Ketolase aus Nodularia spumignea NSOR10 in Tagetes erecta erfolgte unter der Verwendung des binären Vektors pSUN5 (WO02/00Θ00).An expression vector for the Agrobacterium -mediated transformation of the EPSPS-controlled NODK ketolase from Nodularia spumignea NSOR10 in Tagetes erecta was produced using the binary vector pSUN5 (WO02 / 00Θ00).
Zur Herstellung des Expressionsvektors MSP116 wurde das 2.880 KB bp Sacl-XholThe 2,880 KB bp Sacl-Xhol was used to produce the expression vector MSP116
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Fragment aus pJOESP:NODK mit dem Sacl-Xhol geschnittenen Vektor pSUN5 ligiert (Abbildung 18, Konstruktkarte). In der Abbildung 18 beinhaltet Fragment EPSPS den EPSPS Promoter (1761 bp), Fragment rbcS TP FRAGMENT 'das rbcS Transitpeptid aus Erbse (104 bp), Fragment NODK KETO CDS (600 bp), kodierend für die Nodularia spumignea NSOR10 NODK-Ketolase, Fragment OCS Terminator (102 bp) das Polyadenylierungssignal von Octopin-Synthase.Fragment from pJOESP: NODK ligated with the Sacl-Xhol cut vector pSUN5 (Figure 18, construct map). In Figure 18 fragment EPSPS contains the EPSPS promoter (1761 bp), fragment rbcS TP FRAGMENT ' the rbcS transit peptide from pea (104 bp), fragment NODK KETO CDS (600 bp), coding for the Nodularia spumignea NSOR10 NODK-Ketolase, fragment OCS terminator (102 bp) the polyadenylation signal of octopine synthase.
Beispiel 15:Example 15:
Herstellung transgener Lycopersicon esculentum PflanzenProduction of transgenic Lycopersicon esculentum plants
Transformation und Regeneration von Tomatenpflanzen erfolgte nach der publizierten Methode von Ling und Mitarbeitern (Plant Cell Reports (1998), 17:843-847). Für die Varietät Microtom wurde mit höherer Kanamycin-Konzentration (100mg/L) selektioniert.Transformation and regeneration of tomato plants was carried out according to the published method by Ling and co-workers (Plant Cell Reports (1998), 17: 843-847). For the Microtome variety, higher kanamycin concentrations (100 mg / L) were selected.
Als Ausgangsexplantat für die Transformation dienten Kotyledonen und Hypokotyle sieben bis zehn Tage alter Keimlinge der Linie Microtom. Für die Keimung wurde das Kulturmedium nach Murashige und Skoog (1062: Murashige and Skoog, 1062, Physiol. Plant 15, 473-) mit 2% Saccharose, pH 6,-1 verwendet. Die Keimung fand bei 21 °C bei wenig Licht (20 - 100 μE) statt. Nach sieben bis zehn Tagen wurden die Kotyledonen quer geteilt und die Hypokotyle in ca. 5 - 10 mm lange Abschnitte geschnitten und auf das Medium MSBN (MS, pH 6,1, 3% Saccharose + 1 mg/l BAP, 0,1 mg/l NAA) gelegt, das am Vortag mit suspensionskultivierten Tomatenzellen beschickt wurde. Die Tomatenzellen wurden luftblasenfrei mit sterilem Filterpapier abgedeckt. Die Vorkultur der Explantate auf dem beschriebenen Medium erfolgte für drei bis fünf Tage. Zellen des Stammes Agrobakterium tumefaciens LBA4404 wurden einzeln mit den Plasmiden pS3FNR:NOST,pS3AP3:NOST, pS3FNR:NP106, pS3EPS:NP106, pS3FNR:NP105, pS3EPS:NP105, pS3FNR:NODK und pS3EPS:NODK transformiert. Von den einzelnen mit den Binärvektoren pS3FNRNOST,pS3AP3NOST, pS3FNR:NP106, pS3EPS:NP106, pS3FNR:NP195, pS3EPS:NP195, pS3FNR:NODK und pS3EPS:NODK transformierten Agrobakterium-Stämmen wurde jeweils eine Übernachtkultur in YEB Medium mit Kanamycin (20 mg/l) bei 28 °C kultiviert und die Zellen zentrifugiert.Das Bakterienpellet wurde mit flüssigem MS Medium (3% Saccharose, pH 6,1 ) resuspendiert und auf eine optische Dichte von 0,3 (bei 600 nm) eingestellt. Die vorkultivierten Explantate wurden in die Suspension überführt und für 30 Minuten bei Zimmertemperatur unter leichtem Schütteln inkubiert. Anschließend wurden die Explantate mit sterilem Filterpapier getrocknet und für die dreitägige Co-Kultur (21 °C) auf ihr Vorkulturmedium zurück gelegt.The starting explant for the transformation was cotyledons and hypocotyls, seven to ten day old seedlings of the Microtome line. The culture medium according to Murashige and Skoog (1062: Murashige and Skoog, 1062, Physiol. Plant 15, 473-) with 2% sucrose, pH 6.1 was used for the germination. Germination took place at 21 ° C in low light (20 - 100 μE). After seven to ten days, the cotyledons became divided transversely and the hypocotyls cut into sections about 5 to 10 mm long and placed on the medium MSBN (MS, pH 6.1, 3% sucrose + 1 mg / l BAP, 0.1 mg / l NAA), which on The previous day was loaded with suspension-cultivated tomato cells. The tomato cells were covered with sterile filter paper without air bubbles. The explants were precultured on the medium described for three to five days. Cells from the Agrobacterium tumefaciens LBA4404 strain were individually transformed with the plasmids pS3FNR: NOST, pS3AP3: NOST, pS3FNR: NP106, pS3EPS: NP106, pS3FNR: NP105, pS3EPS: NP105, pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: NODK and pS3FNR: transform. Agrobacterium B-20 strains / agonacteria B l) cultivated at 28 ° C and the cells centrifuged. The bacterial pellet was resuspended with liquid MS medium (3% sucrose, pH 6.1) and adjusted to an optical density of 0.3 (at 600 nm). The precultivated explants were transferred to the suspension and incubated for 30 minutes at room temperature with gentle shaking. The explants were then dried with sterile filter paper and placed back on their preculture medium for the three-day co-culture (21 ° C.).
Nach der Co-kultur wurden die Explantate auf MSZ2 Medium (MS pH 6,1 + 3% Saccharose, 2 mg/l Zeatin, 100 mg/l Kanamycin, 160 mg/l Timentin) transferiert und für die selektive Regeneration bei 21 °C unter Schwachlicht Bedingungen (20 - 100 μE, Lichtrhythmus 16h/8h) aufbewahrt. Aller zwei bis drei Wochen erfolgte der Transfer der Explantate bis sich Sprosse bilden. Kleine Sprosse konnten vom Explantat abgetrennt werden und auf MS (pH 6,1 + 3% Saccharose) 160 mg/l Timentin, 30 mg/l Kanamycin, 0,1 mg/l IAA bewurzelt werden. Bewurzelte Pflanzen wurden ins Gewächshaus überführt.After the co-culture, the explants were transferred to MSZ2 medium (MS pH 6.1 + 3% sucrose, 2 mg / l zeatin, 100 mg / l kanamycin, 160 mg / l timentin) and for selective regeneration at 21 ° C stored under low light conditions (20 - 100 μE, light rhythm 16h / 8h). The explants were transferred every two to three weeks until shoots formed. Small shoots could be separated from the explant and rooted on MS (pH 6.1 + 3% sucrose) 160 mg / l timentin, 30 mg / l kanamycin, 0.1 mg / l IAA. Rooted plants were transferred to the greenhouse.
Gemäß der oben beschriebenen Transformationsmethode wurden mit folgenden Ex- pressionskonstrukten folgende Linien erhalten:According to the transformation method described above, the following lines were obtained with the following expression constructs:
Mit pS3FNR:NOST wurde erhalten: MSP101-1 , MSP101-2, MSP101-3With pS3FNR: NOST was obtained: MSP101-1, MSP101-2, MSP101-3
Mit pS3AP3:NOST wurde erhalten: MSP103-1 , MSP103-2, MSP103-3 Mit pS3FNR:NP106 wurde erhalten: MSP105-1 , MSP105-2, MSP105-3With pS3AP3: NOST was obtained: MSP103-1, MSP103-2, MSP103-3 With pS3FNR: NP106 was obtained: MSP105-1, MSP105-2, MSP105-3
Mit pS3EPS:NP196 wurde erhalten: MSP107-1 , MSP107-2, MSP107-3With pS3EPS: NP196 was obtained: MSP107-1, MSP107-2, MSP107-3
Mit pS3FNR:NP105 wurde erhalten: MSP100-1 , MSP100-2, MSP100-3With pS3FNR: NP105 was obtained: MSP100-1, MSP100-2, MSP100-3
Mit pS3EPS:NP105 wurde erhalten: MSP111-1 , MSP111 -2, MSP111 -3With pS3EPS: NP105 it was obtained: MSP111-1, MSP111 -2, MSP111 -3
Mit pS3FNR:NODK wurde erhalten: MSP113-1 , MSP113-2, MSP113-3With pS3FNR: NODK was obtained: MSP113-1, MSP113-2, MSP113-3
Mit pS3EPS:NODK wurde erhalten: MSP115-1 , MSP115-2, MSP115-3With pS3EPS: NODK was obtained: MSP115-1, MSP115-2, MSP115-3
Beispiel 16:Example 16:
Herstellung transgener Tagetes PflanzenProduction of transgenic tagetes plants
Tagetessamen werden sterilisiert und auf Keimungsmedium (MS-Medium; Murashige and Skoog, Physiol. Plant. 15(1062), 473-407) pH 5,8, 2% Saccharose) aufgelegt. Die Keimung erfolgt in einem Temperatur/Licht/Zeitintervall von 18-28°C/20-200 μE/3 - 16 Wochen, bevorzugt jedoch bei 21 °C, 20-70 μE, für 4-8 Wochen.Day tea seeds are sterilized and placed on germination medium (MS medium; Murashige and Skoog, Physiol. Plant. 15 (1062), 473-407) pH 5.8, 2% sucrose). Germination takes place in a temperature / light / time interval of 18-28 ° C / 20-200 μE / 3-16 weeks, but preferably at 21 ° C, 20-70 μE, for 4-8 weeks.
Alle Blätter der sich bis dahin entwickelten in vitro Pflanzen werden geerntet und quer zur Mittelrippe geschnitten. Die dadurch entstehenden Blattexplantate mit einer Größe von 10 - 60 mm2 werden im Verlaufe der Präparation in flüssigem MS - Medium bei Raumtemperatur für maximal 2 h aufbewahrt.All leaves of the in vitro plants that had developed up to that point are harvested and cut across the midrib. The resulting leaf explants with a size of 10 - 60 mm 2 are kept in the course of the preparation in liquid MS medium at room temperature for a maximum of 2 h.
Ein beliebiger Agrobakterium tumefaciens Stamm, bevorzugt aber ein supervirulenter Stamm, wie z.B. EHA105 mit einem entsprechenden Binärplasmid, das ein Selekti- onsmarkergen (bevorzugt bar oder pat) sowie ein oder mehrere Trait- oder Reportergene tragen kann wird (pS5FNR:NOST,pS5AP3:NOST pS5FNR:NP106, pS5EPS:NP196, pS5FNR:NP1 5, pS5EPS:NP1 g5, pS5FNR:NODK und pS5EPS:NODK), über Nacht angezogen und für die Co-Kultivierung mit dem Blattmaterial verwendet. Die Anzucht des Bakterienstammes kann wie folgt erfolgen: Eine Einzelkolonie des entsprechenden Stammes wird in YEB (0,1 % Hefeextrakt, 0,5 % Rindfleischextrakt, 0,5 % Pepton, 0,5 % Saccharose, 0,5 % Magnesiumsulfat x 7 H20) mit 25 mg/l Kanamycin angeimpft und bei 28°C für 16 bis 20 h angezogen. Anschließend wird die Bakteriensuspension durch Zentrifugation bei 6000 g für 10 min geerntet und derart in flüssigem MS Medium resuspendiert, daß eine OD600 von ca. 0,1 bis 0,8 entstand. Diese Suspension wird fuer die C-Kultivierung mit dem Blattmateria! verwendet.Any Agrobacterium tumefaciens strain, but preferably a supervirulent strain, such as EHA105 with a corresponding binary plasmid, which can carry a selection marker gene (preferably bar or pat) and one or more trait or reporter genes (pS5FNR: NOST, pS5AP3: NOST pS5FNR: NP106, pS5EPS: NP196, pS5FNR: NP1 5, pS5EPS: NP1 g5, pS5FNR: NODK and pS5EPS: NODK), grown overnight and used for the co-cultivation with the leaf material. The bacterial strain can be grown as follows: A single colony of the corresponding strain is in YEB (0.1% yeast extract, 0.5% beef extract, 0.5% peptone, 0.5% sucrose, 0.5% magnesium sulfate x 7 H) 2 0) inoculated with 25 mg / l kanamycin and dressed at 28 ° C for 16 to 20 h. The bacterial suspension is then harvested by centrifugation at 6000 g for 10 min and resuspended in liquid MS medium such that an OD 600 of approximately 0.1 to 0.8 was formed. This suspension is used for C cultivation with the leaf matter! used.
Unmittelbar vor der Co-Kultivierung wird das MS-Medium, in dem die Blätter aufbe- wahrt worden sind, durch die Bakteriensuspension ersetzt. Die Inkubation der Blättchen in der Agrobakteriensuspension erfolgte für 30 min unter leichtem Schütteln bei Raumtemperatur. Anschließend werden die infizierten Explantate auf ein mit Agar (z.B. 0,8 % Plant Agar (Duchefa, NL) verfestigtes MS-Medium mit Wachstumsregulatoren, wie beispielsweise 3 mg/l Benzylaminopurin (BAP) sowie 1 mg/l Indolylessigsäure (IAA) aufgelegt. Die Orientierung der Blätter auf dem Medium ist bedeutungslos. Die Kultivierung der Explantate findet für 1 bis 8 Tage, bevorzugt aber für 6 Tage statt, dabei können folgende Bedingungen angewendet werden: Lichtintensität: 30 - 80 - μMol/m2 x sec, Temperatur: 22 - 24°C, hell/dunkel Wechsel von 16/8 Stunden. Anschließend werden die co-kultivierten Explantate auf frisches MS-Medium, bevorzugt mit den gleichen Wachstumsregulatoren übertragen, wobei dieses zweite Medium zusätzlich ein Antibiotikum zur Unterdrückung des Bakterienwachstums enthält. Timentin in einer Konzentration von 200 bis 500 mg/l ist für diesen Zweck sehr geeignet. Als zweite selektive Komponente wird eine für die Selektion des Transformationserfolges eingesetzt. Phosphinothricin in einer Konzentration von 1 bis'5 mg/l selektiert sehr effi- zient, aber auch andere selektive Komponenten gemäß des zu verwendenden Verfahrens sind denkbar.Immediately before the co-cultivation, the MS medium in which the leaves have been kept is replaced by the bacterial suspension. The leaflets were incubated in the agrobacterial suspension for 30 min with gentle shaking at room temperature. The infected explants are then placed on an MS medium solidified with agar (for example 0.8% plant agar (Duchefa, NL) with growth regulators, such as 3 mg / l benzylaminopurine (BAP) and 1 mg / l indolylacetic acid (IAA). The orientation of the leaves on the medium is irrelevant: the explants are cultivated for 1 to 8 days, but preferably for 6 days, the following conditions can be used: light intensity: 30-80 μmol / m 2 x sec, temperature: 22-24 ° C., light / dark change of 16/8 hours, after which the co-cultivated explants are transferred to fresh MS medium, preferably with the same growth regulators, this second medium additionally containing an antibiotic to suppress bacterial growth A concentration of 200 to 500 mg / l is very suitable for this purpose, and the second selective component is one used to select the success of the transformation. Phosphinothricin in a concentration of 1 to 5 mg / l selects very efficiently, but other selective components according to the method to be used are also conceivable.
Nach jeweils ein bis drei Wochen erfolgt der Transfer der Explantate auf frisches Medium bis sich Sproßknospen und kleine Sprosse entwickeln, die dann auf das gleiche Basalmedium einschließlich Timentin und PPT oder alternative Komponenten mit Wachstumsregulatoren, nämlich z.B. 0,5 mg/l Indolylbuttersäure (IBA) und 0,5 mg/l Gibberillinsäure GA3, zur Bewurzelung übertragen werden. Bewurzelte Sprosse können ins Gewächshaus überführt werden.After one to three weeks, the explants are transferred to fresh medium until shoot buds and small shoots develop, which are then on the same basal medium including timentin and PPT or alternative components with growth regulators, namely, for example, 0.5 mg / l indolylbutyric acid (IBA) and 0.5 mg / l gibberillic acid GA 3 , are transferred for rooting. Rooted shoots can be transferred to the greenhouse.
Zusätzlich zu der beschriebenen Methode sind folgende vorteilhafte Modifikationen möglich:In addition to the described method, the following advantageous modifications are possible:
Bevor die Explantate mit den Bakterien infiziert werden, können sie für 1 bis 12 Tage, bevorzugt 3 - 4, auf das oben beschriebene Medium für die Co-Kultur vorinkubiert werden. Anschließend erfolgt die Infektion, Co-Kultur und selektive Regeneration wie oben beschrieben.Before the explants are infected with the bacteria, they can be pre-incubated for 1 to 12 days, preferably 3-4, on the medium described above for the co-culture become. The infection, co-culture and selective regeneration then take place as described above.
Der pH Wert für die Regeneration (normalerweise 5,8) kann auf pH 5,2 gesenkt wer- den. Dadurch wird die Kontrolle des Agrobakterienwachstums verbessert.The pH value for regeneration (normally 5.8) can be lowered to pH 5.2. This improves the control of agrobacterial growth.
Die Zugabe von AgNO3 (3 - 10 mg/l) zum Regenerationsmedium verbessert den Zustand der Kultur einschließlich der Regeneration selbst.The addition of AgNO 3 (3 - 10 mg / l) to the regeneration medium improves the condition of the culture including the regeneration itself.
Komponenten, die die Phenolbildung reduzieren und dem Fachmann bekannt sind, wie z.B. Zitronensäure, Ascorbinsäure, PVP u.v.a.m., wirken sich positiv auf die Kultur aus.Components that reduce phenol formation and are known to those skilled in the art, e.g. Citric acid, ascorbic acid, PVP and many more have a positive effect on the culture.
Für das gesamte Verfahren kann auch flüssiges Kulturmedium Verwendung finden. Die Kultur kann auch auf handelsüblichen Trägern, die auf dem flüssigen Medium positio- niert werden inkubiert werden.Liquid culture medium can also be used for the entire process. The culture can also be incubated on commercially available carriers which are positioned on the liquid medium.
Gemäß der oben beschriebenen Transformationsmethode wurden mit folgenden Ex- pressionskonstrukten folgende Linien erhalten:According to the transformation method described above, the following lines were obtained with the following expression constructs:
Mit pS5FNR:NOST wurde beispielsweise erhalten: MSP102-1 , MSP102-2, MSP102-3,With pS5FNR: NOST, for example, the following was obtained: MSP102-1, MSP102-2, MSP102-3,
Mit pS5AP3:NOST wurde beispielsweise erhalten: MSP104-1 , MSP104-2, MSP104-3With pS5AP3: NOST, for example, the following was obtained: MSP104-1, MSP104-2, MSP104-3
Mit pS5FNR:NP106 wurde erhalten: MSP106-1 , MSP106-2, MSP106-3With pS5FNR: NP106 was obtained: MSP106-1, MSP106-2, MSP106-3
Mit pS5EPS:NP106 wurde erhalten: MSP108-1 , MSP108-2, MSP108-3With pS5EPS: NP106 was obtained: MSP108-1, MSP108-2, MSP108-3
Mit pS5FNR:NP105 wurde erhalten: MSP110-1 , MSP110-2, MSP110-3With pS5FNR: NP105 was obtained: MSP110-1, MSP110-2, MSP110-3
Mit pS5EPS:NP105 wurde erhalten: MSP112-1 , MSP1 12-2, MSP112-3With pS5EPS: NP105 it was obtained: MSP112-1, MSP1 12-2, MSP112-3
Mit pS5FNR:NODK wurde erhalten: MSP114-1 , MSP114-2, MSP114-3With pS5FNR: NODK was obtained: MSP114-1, MSP114-2, MSP114-3
Mit pS5EPS:NODK wurde erhalten: MSP116-1 , MSP116-2, MSP116-3 Beispiel 17With pS5EPS: NODK, the following was obtained: MSP116-1, MSP116-2, MSP116-3 Example 17
Charakterisierung der transgenen PflanzenblütenCharacterization of the transgenic plant flowers
Beispiel 9.1 Trennung von Carotinoidestem in Blütenblättern transgener PflanzenExample 9.1 Separation of Carotenoid Esters in Petals of Transgenic Plants
Allgemeine Arbeitsvorschrift:General working instructions:
Die Blütenblätter der transgenen Pflanzen werden in flüssigem Stickstoff gemörsert und das Petalenpulver (etwa 40 mg) mit 100% Aceton extrahiert (dreimal je 500 ul). Das Lösungsmittel wird evaporiert und die Carotinoide in 100-200 ul Petrolether/Aceton (5:1 , v/v) resuspendiert.The petals of the transgenic plants are mortarized in liquid nitrogen and the petalen powder (about 40 mg) extracted with 100% acetone (three times 500 ul). The solvent is evaporated and the carotenoids are resuspended in 100-200 ul of petroleum ether / acetone (5: 1, v / v).
Die Carotinoide werden in konzentrierter Form mittels Dünnschicht-Chromatographie (TLC) auf SilicaβO F254- Platten (Merck) in einem organischen Lauf mittel (Petrolether/Aceton; 5:1) entsprechend ihrer Phobizität aufgetrennt. Gelbe (Xanthophyllester), rote (Ketocarotinoidester) und orange Banden (Mischung aus Xanthophyll- und Ketoca- rotinoidestern)auf der TLC werden ausgekratzt.The carotenoids are separated in concentrated form by means of thin layer chromatography (TLC) on SilicaβO F254 plates (Merck) in an organic solvent (petroleum ether / acetone; 5: 1) according to their phobicity. Yellow (xanthophyll esters), red (ketocarotenoid esters) and orange bands (mixture of xanthophyll and ketocarotenoid esters) are scraped out on the TLC.
Die an Silica gebundenen Carotinoide werden dreimal mit 500 ul Aceton eluiert, das Lösungsmittel evaporiert und die Carotinoide mittels HPLC aufgetrennt und identifiziert.The carotenoids bound to silica are eluted three times with 500 μl of acetone, the solvent is evaporated and the carotenoids are separated and identified by means of HPLC.
Mittels einer C30-reverse phase-Säule kann zwischen Mono- und Diestem der Carotinoide unterschieden werden. HPLC-Laufbedingungen waren nahezu identisch mit ei- ner publizierten Methode (Frazer et al.(2000), Plant Journal 24(4): 551-558). Folgende Verfahrensbedingungen wurden eingestellt.A C30 reverse phase column can be used to differentiate between mono- and diesters of carotenoids. HPLC running conditions were almost identical to a published method (Frazer et al. (2000), Plant Journal 24 (4): 551-558). The following process conditions were set.
Trennsäule: Prontosil C30-Säule, 250 x 4,6 mm, (Bischoff, Leonberg) Flussrate: 1.0 ml/min Eluenten: Lauf mittel A - 100% MethanolSeparation column: Prontosil C30 column, 250 x 4.6 mm, (Bischoff, Leonberg) Flow rate: 1.0 ml / min Eluents: mobile phase A - 100% methanol
Laufmittel B - 80% Methanol, 0.2% Ammoniumacetat Lauf mittel C - 100% t-Butyl-methylether Gradientprofil:Solvent B - 80% methanol, 0.2% ammonium acetate solvent C - 100% t-butyl methyl ether gradient profile:
Detektion: 300 - 500 nmDetection: 300 - 500 nm
Eine Identifizierung der Carotinoide ist aufgrund der UV-VIS-Spektren möglich.The carotenoids can be identified on the basis of the UV-VIS spectra.
Petalenmaterial der transgenen Tomatenpflanzen wird gemörsert und mit Aceton extrahiert. Extrahierte Carotinoide werden mittels TLC aufgetrennt. In den Linien könnenPetal material from the transgenic tomato plants is ground and extracted with acetone. Extracted carotenoids are separated by means of TLC. In the lines can
XX
Mono- und Diester von Ketocarotinoiden detektiert werden; die Monoester sind in deut- lieh geringerer Konzentration als die Diester vorhanden.Mono and diesters of ketocarotenoids can be detected; the monoesters are present in a significantly lower concentration than the diesters.
Beispiel 18Example 18
Enzymatische Hydrolyse von Carotinoidestem und Identifizierung der CarotinoideEnzymatic hydrolysis of carotenoid esters and identification of carotenoids
Allgemeine ArbeitsvorschriftGeneral working instructions
Gemörsertes Petalenmaterial (30-100 mg Frischgewicht) wird mit 100% Aceton (dreimal 500ul; jeweils etwa 15 Minuten schütteln) extrahiert. Das Lösungsmittel wird evaporiert. Carotinoide werden anschließend in 405 ul Aceton aufgenommen, 4,95 ml Ka- lium-phosphatpuffer (100 mM, pH7.4) zugegeben und gut gemischt. Danach erfolgt die Zugabe von ca. 17 mg Bile-Salze (Sigma) und 140 μl einer NaCI/CaCI2-Lösung (3M NaCI und 75 mM CaCI2). Die Suspension wird für 30 Minuten bei 37C inkubiert. Für die enzymatische Hydrolyse der Carotinoidester wird 505 μl einer Lipaselösung (50 mg/ml Lipase Typ7 von Candida rugosa(Sigma)) zugegeben und unter Schütteln bei 37C inkubiert. Nach etwa 21 Stunden erfolgte nochmals eine Zugabe von 595 μl Lipase mit erneuter Inkubation von mindestens 5 Stunden bei 37C. Anschließend werden etwa ca. 700 mg Na2SO4x10H20 in der Lösung gelöst. Nach Zugabe von 1800 μl Petrolether werden die Carotinoide durch kräftig Mischen in die organische Phase extrahiert. Dieses Ausschütteln wird solange wiederholt, bis die organische Phase frablos bleibt. Die Petroletherfraktionen werden vereinigt und der Petrolether evaporiert. Freie Carotinoide werden in 100-120 ul Aceton aufgenommen. Mittels HPLC und C30- reverse phase-Säuie können freie Carotinoide aufgrund von Retentionszeit und UV- VlS-Spektren identifiziert werden. Mortar petal material (30-100 mg fresh weight) is extracted with 100% acetone (three times 500 ul; shake for about 15 minutes each). The solvent is evaporated. Carotenoids are then taken up in 405 μl of acetone, 4.95 ml of potassium phosphate buffer (100 mM, pH 7.4) are added and mixed well. Then about 17 mg of Bile salts (Sigma) and 140 μl of a NaCI / CaCI2 solution (3M NaCI and 75 mM CaCI2) are added. The suspension is incubated for 30 minutes at 37C. For the enzymatic hydrolysis of the carotenoid esters, 505 μl of a lipase solution (50 mg / ml lipase type 7 from Candida rugosa (Sigma)) is added and incubated with shaking at 37C. After about 21 hours, 595 μl of lipase was added again and incubation was continued for at least 5 hours at 37C. Then be about 700 mg of Na2SO4x10H20 dissolved in the solution. After adding 1800 μl of petroleum ether, the carotenoids are extracted into the organic phase by vigorous mixing. This shaking is repeated until the organic phase remains indolent. The petroleum ether fractions are combined and the petroleum ether evaporated. Free carotenoids are taken up in 100-120 ul acetone. Free carotenoids can be identified on the basis of retention time and UV-VlS spectra by means of HPLC and C30 reverse phase acid.

Claims

Patentansprüche Patent claims
1. Verfahren zur Herstellung von Ketocarotinoiden durch Kultivierung von genetisch veränderten Organismen, die im Vergleich zum Wildtyp eine veränderte Ketolase-Aktivität aufweisen, und die veränderte Ketolase-Aktivität durch eine Ketolase verursacht wird, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.1. Process for the production of ketocarotenoids by culturing genetically modified organisms which have an altered ketolase activity compared to the wild type, and the altered ketolase activity is caused by a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 42% identity at the amino acid level with the sequence SEQ. ID. NO. 2 has.
2. Verfahren nach Anspruch 1, dadurch gekennzeichnet, dass man Organismen - verwendet, die als Wildtyp bereits eine Ketolase-Aktivität aufweisen, und die genetische Veränderung eine Erhöhung der Ketolase-Aktivität im Vergleich zum Wildtyp bewirkt.2. The method according to claim 1, characterized in that organisms are used which, as wild type, already have ketolase activity, and the genetic modification causes an increase in ketolase activity compared to the wild type.
3. Verfahren nach Anspruch 2, dadurch gekennzeichnet, dass man zur Erhöhung der Ketolase-Aktivität die Genexpression einer Nukleinsäure, kodierend'eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf3. The method according to claim 2, characterized in that to increase the ketolase activity, the gene expression of a nucleic acid, encoding a ketolase, containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42%
Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist, gegenüber dem Wildtyp erhöht.Amino acid level with the sequence SEQ. ID. NO. 2 has increased compared to the wild type.
4. Verfahren nach Anspruch 3, dadurch gekennzeichnet, dass man zur Erhöhung der Genexpression Nukleinsäuren in den Organismus einbringt, die Ketolasen kodieren, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.4. The method according to claim 3, characterized in that, in order to increase gene expression, nucleic acids which encode ketolases and contain the amino acid sequence SEQ are introduced into the organism. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 42% identity at the amino acid level with the sequence SEQ. ID. NO. 2 has.
5. Verfahren nach Anspruch 1 , dadurch gekennzeichnet, dass man Organismen verwendet, die als Wildtyp keine Ketolase-Aktivität aufweisen und die genetische Veränderung eine Ketolase-Aktivität im Vergleich zum Wildtyp verursacht.5. The method according to claim 1, characterized in that organisms are used which, as wild type, have no ketolase activity and the genetic modification causes ketolase activity compared to the wild type.
6. Verfahren nach Anspruch 5, dadurch gekennzeichnet, dass man genetisch ver- änderte Organismen verwendet, die transgen eine Ketolase, enthaltend die Ami-6. The method according to claim 5, characterized in that genetically modified organisms are used which transgenically produce a ketolase containing the amino acids.
Fig/Seq nosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist, exprimieren.Fig/Seq noacid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids that has at least 42% identity at the amino acid level with the sequence SEQ. ID. NO. 2 has, express.
7. Verfahren nach Anspruch 5 oder 6, dadurch gekennzeichnet, dass man zur Verursachung der Genexpression Nukleinsäuren in die Organismen einbringt, die Ketolasen kodieren, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Amino- säuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.7. The method according to claim 5 or 6, characterized in that to cause gene expression, nucleic acids which encode ketolases containing the amino acid sequence SEQ are introduced into the organisms. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 has.
8. Verfahren nach Anspruch 5 oder 7, dadurch gekennzeichnet, dass man Nukleinsäuren, enthaltend die Sequenz SEQ. ID. NO. 1 einbringt.8. The method according to claim 5 or 7, characterized in that nucleic acids containing the sequence SEQ. ID. NO. 1 brings in.
0. Verfahren nach einem der Ansprüche 1 bis 8, dadurch gekennzeichnet, dass die Organismen zusätzlich gegenüber dem Wildtyp eine erhöhte Aktivität mindestens einer der Aktivitäten, ausgewählt aus der Gruppe Hydroxylase-Aktivität und ß-Cyclase-Aktivität, aufweisen.0. The method according to any one of claims 1 to 8, characterized in that the organisms additionally have an increased activity compared to the wild type of at least one of the activities selected from the group of hydroxylase activity and ß-cyclase activity.
10. Verfahren nach Anspruch 0, dadurch gekennzeichnet, dass man zur zusätzlichen Erhöhung mindestens einer der Aktivitäten, die Genexpression mindestens einer Nukleinsäure ausgewählt aus der Gruppe Nukleinsäuren, kodierend eine Hydroxylase, und Nukleinsäuren, kodierend eine ß-Cyclase, gegenüber dem Wildtyp erhöht.10. The method according to claim 0, characterized in that to additionally increase at least one of the activities, the gene expression of at least one nucleic acid selected from the group of nucleic acids encoding a hydroxylase and nucleic acids encoding a ß-cyclase is increased compared to the wild type.
11. Verfahren nach Anspruch 10, dadurch gekennzeichnet, dass man zur Erhöhung der Genexpression mindestens eine Nukleinsäure ausgewählt aus der Gruppe, Nukleinsäuren kodierend eine Hydroxylase und Nukleinsäuren kodierend eine ß- Cyclase in den Organismus einbringt.11. The method according to claim 10, characterized in that to increase gene expression, at least one nucleic acid selected from the group consisting of nucleic acids encoding a hydroxylase and nucleic acids encoding a ß-cyclase is introduced into the organism.
12. Verfahren nach Anspruch 11 , dadurch gekennzeichnet, dass man als Nukleinsäure, kodierend eine Hydroxylase, Nukleinsäuren einbringt, die eine Hydroxylase kodieren, enthaltend die Aminosäuresequenz SEQ ID NO: 16 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 20 % auf Aminosäureebene mit der Sequenz SEQ ID NO: 16 aufweist.12. The method according to claim 11, characterized in that as nucleic acid encoding a hydroxylase, nucleic acids are introduced which encode a hydroxylase containing the amino acid sequence SEQ ID NO: 16 or one of this sequence by substitution, insertion or deletion of amino acids derived sequence that has at least 20% identity at the amino acid level with the sequence SEQ ID NO: 16.
13. Verfahren nach Anspruch 12, dadurch gekennzeichnet, dass man Nukleinsäuren, enthaltend die Sequenz SEQ ID NO: 15 einbringt.13. The method according to claim 12, characterized in that nucleic acids containing the sequence SEQ ID NO: 15 are introduced.
14. Verfahren nach Anspruch 11, dadurch gekennzeichnet, dass man als Nukleinsäure, kodierend eine ß-Cyclase, Nukleinsäuren einbringt, die eine ß-Cyclase kodieren, enthaltend die Aminosäuresequenz SEQ ID NO: 18 oder eine von die- ser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 20 % auf Aminosäureebene mit der Sequenz SEQ ID NO: 18 aufweist.14. The method according to claim 11, characterized in that, as nucleic acid encoding a ß-cyclase, nucleic acids are introduced which encode a ß-cyclase, containing the amino acid sequence SEQ ID NO: 18 or one of this sequence by substitution, insertion or deletion of amino acids derived sequence that has at least 20% identity at the amino acid level with the sequence SEQ ID NO: 18.
15. Verfahren nach Anspruch 14, dadurch gekennzeichnet, dass man Nukleinsäuren, enthaltend die Sequenz SEQ ID NO: 17 einbringt.15. The method according to claim 14, characterized in that nucleic acids containing the sequence SEQ ID NO: 17 are introduced.
16. Verfahren nach einem der Ansprüche 1 bis 15, dadurch gekennzeichnet, dass man nach dem Kultivieren die genetisch veränderten Organismen erntet und anschließend die Ketocarotinoide aus den Organismen isoliert.16. The method according to any one of claims 1 to 15, characterized in that after cultivation the genetically modified organisms are harvested and the ketocarotenoids are then isolated from the organisms.
17. Verfahren nach einem der Ansprüche 1 bis 16, dadurch gekennzeichnet daß man als Organismus einen Organismus verwendet, der als Ausgangsorganismus natürlicherweise oder durch genetische Komplementierung oder Umregulie- rung von Stoffwecheselwegen in der Lage ist, Carotinoide herzustellen.17. The method according to one of claims 1 to 16, characterized in that the organism used is an organism which, as the starting organism, is capable of producing carotenoids naturally or through genetic complementation or reregulation of metabolic pathways.
18. Verfahren nach einem der Ansprüche 1 bis 17, dadurch gekennzeichnet, daß man als Organismen Mikroorganismen oder Pflanzen verwendet.18. The method according to any one of claims 1 to 17, characterized in that microorganisms or plants are used as organisms.
10. Verfahren nach Anspruch 18, dadurch gekennzeichnet, daß man als Mikroorga- nismen Bakterien, Hefen, Algen oder Pilze verwendet.10. The method according to claim 18, characterized in that bacteria, yeasts, algae or fungi are used as microorganisms.
20. Verfahren nach Anspruch 10, dadurchgekennzeichnet, daß die Mikroorganismen ausgwählt sind aus der Gruppe Escherichia, Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc, Cyanobakterien der Gattung Synecho- cystis, Candida, Saccharomyces, Hansenula, Phaffia, Pichia, Aspergillus, Tri- choderma, Ashbya, Neurospora, Blakeslea, Phycomyces, Fusarium, Haematococcus, Phaedactylum tricornatum, Volvox oder Dunaliella.20. The method according to claim 10, characterized in that the microorganisms are selected from the group Escherichia, Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc, cyanobacteria of the genus Synechocystis, Candida, Saccharomyces, Hansenula, Phaffia, Pichia, Aspergillus, Tri- choderma, Ashbya, Neurospora, Blakeslea, Phycomyces, Fusarium, Haematococcus, Phaedactylum tricornatum, Volvox or Dunaliella.
21. Verfahren nach Anspruch 18, dadurch gekennzeichnet, daß man als Organis- mus Pflanzen verwendet.21. The method according to claim 18, characterized in that plants are used as the organism.
22. Verfahren nach Anspruch 21 , dadurch gekennzeichnet, dass man als Pflanze eine Pflanze, ausgewählt aus den Familien Ranunculaceae, Berberidaceae, Pa- paveraceae, Cannabaceae, Rosaceae, Fabaceae, Linaceae, Vitaceae, Brassi- ceae, Cucurbitaceae, Pri ulaceae, Caryophyllaceae, Amaranthaceae, Gentia- naceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Orchida- ceae, Malvaceae, liliaceae oder Lamiaceae verwendet.22. The method according to claim 21, characterized in that the plant is a plant selected from the families Ranunculaceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Linaceae, Vitaceae, Brassiceae, Cucurbitaceae, Priulaceae, Caryophyllaceae, Amaranthaceae, Gentianaceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Orchida-ceae, Malvaceae, liliaceae or Lamiaceae.
23. Verfahren nach Anspruch 22, dadurch gekennzeichnet, dass man als Pflanze eine Pflanze, ausgewählt aus den Pflanzengattungen Marigold, Tagetes erecta, Tagetes patula, Acacia, Aconitum, Adonis, Arnica, Aqulegia, Aster, Astragalus, Bignonia, Calenduia, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphini- um, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia,23. The method according to claim 22, characterized in that the plant is a plant selected from the plant genera Marigold, Tagetes erecta, Tagetes patula, Acacia, Aconitum, Adonis, Arnica, Aqulegia, Aster, Astragalus, Bignonia, Calenduia, Caltha, Campanula , Canna, Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia,
Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillea, Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kerria, Laburnum, Lathyrus, Leonto- don, Lilium, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimu- lus, Narcissus, Oenothera, Osmanthus, Petunia, Photinia, Physalis, Phyteuma,Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillea, Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kerria, Laburnum, Lathyrus, Leontodon, Lilium, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimulus, Narcissus, Oenothera, Osmanthus, Petunia, Photinia, Physalis, Phyteuma,
Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Silphium, Sinapsis, Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussilago, Ulex, Viola oder Zinnia verwendet.Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Silphium, Sinapsis, Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussilago, Ulex, Viola or Zinnia.
24. Verfahren nach einem der Ansprüche 1 bis 23, dadurch gekennzeichnet, dass die Ketocarotinoide ausgewählt sind aus der Gruppe Astaxanthin, Canthaxanthin, Echinenon, 3-Hydroxyechinenon, 3'-Hydroxyechinenon, Adonirubin und Adonixanthin. 24. The method according to any one of claims 1 to 23, characterized in that the ketocarotenoids are selected from the group astaxanthin, canthaxanthin, echinenone, 3-hydroxyechinenone, 3'-hydroxyequinenone, adonirubin and adonixanthin.
25. Genetisch veränderter Organismus, wobei die genetische Veränderung die Aktivität einer Ketolase25. Genetically modified organism, where the genetic modification affects the activity of a ketolase
A für den Fall, dass der Wildtyporganismus bereits eine Ketolase-Aktivität auf- weist, gegenüber dem Wildtyp erhöht undA in the event that the wild-type organism already has ketolase activity, increased compared to the wild type and
B für den Fall, dass der Wildtyporganismus keine Ketolase-Aktivitätaufweist, gegenüber dem Wildtyp verursachtB in the event that the wild-type organism has no ketolase activity compared to the wild type
und die nach A erhöhte oder nach B verursachte Ketolase-Aktivität durch eineand the ketolase activity increased after A or caused after B by a
Ketolase verursacht wird, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.Ketolase is caused, containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 42% identity at the amino acid level with the sequence SEQ. ID. NO. 2 has.
26. Genetisch veränderter Organismus nach Anspruch 25, dadurch gekennzeichnet, dass die Erhöhung oder Verursachung der Ketolase-Aktivität durch eine Erhöhung oder Verursachung der Genexpression einer Nukleinsäure, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von die- ser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist, gegenüber dem Wildtyp bewirkt wird.26. Genetically modified organism according to claim 25, characterized in that increasing or causing ketolase activity by increasing or causing gene expression of a nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has an identity of at least 42% at the amino acid level with the sequence SEQ. ID. NO. 2 compared to the wild type.
27. Genetisch veränderter Organismuse nach Anspruch 26, dadurch gekennzeich- net, dass man zur Erhöhung oder Verursachung der Genexpression Nukleinsäuren in den Organismus einbringt, die Ketolasen kodieren, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.27. Genetically modified organisms according to claim 26, characterized in that in order to increase or cause gene expression, nucleic acids which encode ketolases and which contain the amino acid sequence SEQ are introduced into the organism. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 42% identity at the amino acid level with the sequence SEQ. ID. NO. 2 has.
28. Genetisch veränderter Organismus, enthaltend mindestens eine transgene Nukleinsäure, kodierend eine Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.28. Genetically modified organism containing at least one transgenic nucleic acid encoding a ketolase containing the amino acid sequence SEQ. ID. NO. 2 or any of this sequence by substitution, insertion or deletion amino acid derived sequence that has at least 42% identity at the amino acid level with the sequence SEQ. ID. NO. 2 has.
29. Genetisch veränderter Organismus, enthaltend mindestens zwei endogene Nuk- leinsäuren, kodierend eine Ketolase, enthaltend die Aminosäuresequenz29. Genetically modified organism containing at least two endogenous nucleic acids encoding a ketolase containing the amino acid sequence
SEQ. ID. NO. 2 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 42 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 2 aufweist.SEQ. ID. NO. 2 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 42% identity at the amino acid level with the sequence SEQ. ID. NO. 2 has.
30. Genetisch veränderter Organismus nach einem der Ansprüche 25 bis 20, dadurch gekennzeichnet, dass die genetische Veränderung zusätzlich mindestens eine der Aktivitäten, ausgewählt aus der Gruppe Hydroxlase-Aktivität und ß- Cyclase-Aktivität gegenüber dem Wildtypp erhöht.30. Genetically modified organism according to one of claims 25 to 20, characterized in that the genetic modification additionally increases at least one of the activities selected from the group of hydroxlase activity and ß-cyclase activity compared to the wild type.
31. Genetisch veränderter Organismus nach einem der Ansprüche 25 bis 30, dadurch gekennzeichnet daß er als Ausgangsorganismus natürlicherweise ode durch genetische Komplementierung in der Lage ist, Carotinoide herzustellen.31. Genetically modified organism according to one of claims 25 to 30, characterized in that as a starting organism it is naturally capable of producing carotenoids or through genetic complementation.
32. Genetisch veränderter Organismus nach einem der Ansprüche 25 bis 31 , aus- gewählt aus der Gruppe Mikroorganismen oder Pflanzen.32. Genetically modified organism according to one of claims 25 to 31, selected from the group of microorganisms or plants.
33. Genetisch veränderter Mikroorganismus nach Anspruch 32, dadurch gekennzeichnet, daß die Mikroorganismen ausgewählt sind aus der Gruppe Bakterien, Hefen, Algen oder Pilze.33. Genetically modified microorganism according to claim 32, characterized in that the microorganisms are selected from the group of bacteria, yeasts, algae or fungi.
34. Genetisch veränderter Mikroorganismus nach Anspruch 33, dadurch gekennzeichnet, daß die Mikroorganismen ausgwählt sind aus der Gruppe Escherichia, Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc, Cya- nobakterien der Gattung Synechocystis, Candida, Saccharomyces, Hansenula, Pichia, Aspergillus, Trichoderma, Ashbya, Neurospora, Blakeslea, Phycomyces,34. Genetically modified microorganism according to claim 33, characterized in that the microorganisms are selected from the group Escherichia, Erwinia, Agrobacterium, Flavobacterium, Alcaligenes, Paracoccus, Nostoc, cyanobacteria of the genus Synechocystis, Candida, Saccharomyces, Hansenula, Pichia, Aspergillus , Trichoderma, Ashbya, Neurospora, Blakeslea, Phycomyces,
Fusahum, Haematococcus, Phaedactylum tricomatum, Volvox oder Dunaliella.Fusahum, Haematococcus, Phaedactylum tricomatum, Volvox or Dunaliella.
35. Genetisch veränderte Pflanze nach Anspruch 32, dadurch gekennzeichnet, dass die Pflanzen ausgewählt sind aus den Familien Ranuncuiaceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Linaceae, Vitaceae, Bras- siceae, Cucurbitaceae, Primulaceae, Caryophyllaceae, Amaranthaceae, Gentianaceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Orchidaceae, Malvaceae, liliaceae oder Lamiaceae verwendet.35. Genetically modified plant according to claim 32, characterized in that the plants are selected from the families Ranuncuiaceae, Berberidaceae, Papaveraceae, Cannabaceae, Rosaceae, Fabaceae, Linaceae, Vitaceae, Bras- siceae, Cucurbitaceae, Primulaceae, Caryophyllaceae, Amaranthaceae, Gentianaceae, Geraniaceae, Caprifoliaceae, Oleaceae, Tropaeolaceae, Solanaceae, Scrophulariaceae, Asteraceae, Liliaceae, Amaryllidaceae, Poaceae, Orchidaceae, Malvaceae, liliaceae or Lamiaceae.
36. Genetisch veränderte Pflanze nach Anspruch 35, dadurch gekennzeichnet, dass Pflanzen ausgewählt sind aus den Pflanzengattungen Marigold, Tagetes erecta, Tagetes patula, Acacia, Aconitum, Adonis, Arnica, Aqulegia, Aster, Astragalus, Bignonia, Calenduia, Caltha, Campanula, Canna, Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphini- um, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia, Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillea, Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kerria, Labumum, Lathyrus, Leonto- don, Lilium, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimulus, Narcissus, Oenothera, Osmanthus, Petunia, Photinia, Physalis, Phyteuma,36. Genetically modified plant according to claim 35, characterized in that plants are selected from the plant genera Marigold, Tagetes erecta, Tagetes patula, Acacia, Aconitum, Adonis, Arnica, Aqulegia, Aster, Astragalus, Bignonia, Calenduia, Caltha, Campanula, Canna , Centaurea, Cheiranthus, Chrysanthemum, Citrus, Crepis, Crocus, Curcurbita, Cytisus, Delonia, Delphinium, Dianthus, Dimorphotheca, Doronicum, Eschscholtzia, Forsythia, Fremontia, Gazania, Gelsemium, Genista, Gentiana, Geranium, Gerbera, Geum, Grevillea , Helenium, Helianthus, Hepatica, Heracleum, Hisbiscus, Heliopsis, Hypericum, Hypochoeris, Impatiens, Iris, Jacaranda, Kerria, Labumum, Lathyrus, Leontodon, Lilium, Linum, Lotus, Lycopersicon, Lysimachia, Maratia, Medicago, Mimulus, Narcissus , Oenothera, Osmanthus, Petunia, Photinia, Physalis, Phyteuma,
X' X '
Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Siiphium, Sinapsis, Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussilago, Ulex, Viola oder Zinnia verwendet.Potentilla, Pyracantha, Ranunculus, Rhododendron, Rosa, Rudbeckia, Senecio, Silene, Siiphium, Sinapsis, Sorbus, Spartium, Tecoma, Torenia, Tragopogon, Trollius, Tropaeolum, Tulipa, Tussilago, Ulex, Viola or Zinnia.
37. Verwendung der genetisch veränderten Organismen nach einem der Ansprüche 25 bis 36 als Futter- oder Nahrungsmittel.37. Use of the genetically modified organisms according to one of claims 25 to 36 as feed or food.
38. Verwendung der genetisch veränderten Organismen nach einem der Ansprüche 25 bis 36 zur Herstellung von Ketocarotinoid-haltigen Extrakten oder zur Herstellung von Futter- und Nahrungsergänzungsmittel.38. Use of the genetically modified organisms according to one of claims 25 to 36 for the production of ketocarotenoid-containing extracts or for the production of feed and nutritional supplements.
30. Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 8 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abge- leitete Sequenz, die eine Identität von mindestens 70 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 8 aufweist, mit der Maßgabe, dass die Aminosäuresequenzen SEQ ID NO: 4 nicht enthalten ist.30. Ketolase containing the amino acid sequence SEQ. ID. NO. 8 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has an identity of at least 70% at the amino acid level with the sequence SEQ. ID. NO. 8, with the proviso that the amino acid sequences SEQ ID NO: 4 is not included.
40. Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 6 oder eine von die- ser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abge- leitete Sequenz, die eine Identität von mindestens 70 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 6 aufweist.40. Ketolase containing the amino acid sequence SEQ. ID. NO. 6 or one of this sequence by substitution, insertion or deletion of amino acids derived sequence that has at least 70% identity at the amino acid level with the sequence SEQ. ID. NO. 6 has.
41. Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 12 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 70 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 12 aufweist, mit der Maßgabe, dass die Aminosäuresequenzen SEQ ID NO: 6 nicht enthalten ist.41. Ketolase containing the amino acid sequence SEQ. ID. NO. 12 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 70% identity at the amino acid level with the sequence SEQ. ID. NO. 12, with the proviso that the amino acid sequences SEQ ID NO: 6 is not included.
42. Ketolase, enthaltend die Aminosäuresequenz SEQ. ID. NO. 40 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren, abgeleitete Sequenz, die eine Identität von mindestens 50 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 40 aufweist, mit der Maßgabe, dass die Aminosäuresequenzen SEQ ID NO: 47 nicht enthalten ist.42. Ketolase containing the amino acid sequence SEQ. ID. NO. 40 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids, which has at least 50% identity at the amino acid level with the sequence SEQ. ID. NO. 40, with the proviso that the amino acid sequences SEQ ID NO: 47 is not included.
43. Nukleinsäure, kodierend ein Protein gemäß einem der Ansprüche 30 bis 42, mit43. Nucleic acid encoding a protein according to one of claims 30 to 42
X der Maßgabe, dass die Sequenz SEQ ID NO: 5 nicht enthalten ist.X with the proviso that the sequence SEQ ID NO: 5 is not included.
44. Verwendung eines Proteins, enthaltend die Aminosäuresequenz SEQ. ID. NO. 4 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von44. Use of a protein containing the amino acid sequence SEQ. ID. NO. 4 or any of this sequence by substitution, insertion or deletion of
Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 70 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 4 und die Eigenschaft einer Ketolase aufweist, als Ketolase.Amino acid derived sequence that has at least 70% identity at the amino acid level with the sequence SEQ. ID. NO. 4 and has the property of a ketolase, as ketolase.
45. Verwendung eines Proteins, enthaltend die Aminosäuresequenz SEQ. ID. NO. 6 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 65 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 6 und die Eigenschaft einer Ketolase aufweist, als Ketolase.45. Use of a protein containing the amino acid sequence SEQ. ID. NO. 6 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 65% identity at the amino acid level with the sequence SEQ. ID. NO. 6 and has the property of a ketolase, as ketolase.
46. Verwendung eines Proteins, enthaltend die Aminosäuresequenz SEQ. ID. NO. 47 oder eine von dieser Sequenz durch Substitution, Insertion oder Deletion von Aminosäuren abgeleitete Sequenz, die eine Identität von mindestens 50 % auf Aminosäureebene mit der Sequenz SEQ. ID. NO. 47 und die Eigenschaft einer Ketolase aufweist, als Ketolase. 46. Use of a protein containing the amino acid sequence SEQ. ID. NO. 47 or a sequence derived from this sequence by substitution, insertion or deletion of amino acids which has at least 50% identity at the amino acid level with the sequence SEQ. ID. NO. 47 and has the property of a ketolase, as ketolase.
EP03792348A 2002-08-20 2003-08-18 Method for producing ketocarotinoids in genetically modified organisms Withdrawn EP1532265A2 (en)

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DE2002138980 DE10238980A1 (en) 2002-08-20 2002-08-20 Method for preparing ketocarotenoids, useful e.g. as food or feed supplements, by increasing, or introducing, ketolase activity in the petals of transgenic plants, also new nucleic acid constructs
DE10238979A DE10238979A1 (en) 2002-08-20 2002-08-20 Preparing zeaxanthin and its precursors or products, useful as food and feed supplements, comprises growing transgenic plants that have reduced epsilon-cyclase activity
DE10238980 2002-08-20
DE10238978A DE10238978A1 (en) 2002-08-20 2002-08-20 Method for preparing ketocarotenoids, useful e.g. as food or feed supplements, by increasing, or introducing, ketolase activity in the fruits of transgenic plants, also new nucleic acid constructs
DE10238979 2002-08-20
DE10238978 2002-08-20
DE10253112 2002-11-13
DE2002153112 DE10253112A1 (en) 2002-11-13 2002-11-13 Production of ketocarotenoids with low hydroxylated by-product content, for use e.g. in pigmenting feedstuffs, by culturing genetically modified organisms having modified ketolase activity
DE10258971 2002-12-16
DE2002158971 DE10258971A1 (en) 2002-12-16 2002-12-16 Use of astaxanthin-containing plant material, or extracts, from Tagetes for oral administration to animals, particularly for pigmentation of fish, crustacea, birds and their products
PCT/EP2003/009106 WO2004018694A2 (en) 2002-08-20 2003-08-18 Method for producing ketocarotinoids in genetically modified organisms

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EP03792347A Withdrawn EP1542945A2 (en) 2002-08-20 2003-08-18 Method for the production of zeaxanthin and/or the biosynthetic intermediates and/or subsequent products thereof
EP03792349A Withdrawn EP1532266A2 (en) 2002-08-20 2003-08-18 Method for producing ketocarotinoids in plant fruit
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EP03792349A Withdrawn EP1532266A2 (en) 2002-08-20 2003-08-18 Method for producing ketocarotinoids in plant fruit
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