Classifications

• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
  • C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
  • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
  • C12N15/09—Recombinant DNA-technology
  • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
  • C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
  • C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
  • C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
  • C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
  • C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
  • C12N15/8279—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
  • C12N15/8283—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for virus resistance
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
  • C12N2770/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses positive-sense
  • C12N2770/00011—Details
  • C12N2770/00022—New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes

Definitions

• the present invention is related to a method for inducing viral resistance into a cell and a plant, especially BNYW-resistance into a sugar beet cell and plant .
• Rhizomania The widespread viral disease of the sugar beet plant (Beta vulgari s) called Rhizomania is caused by a benyvirus, the beet necrotic yellow vein virus (BNYW) (23, 24) which is transmitted to the root of the beet by the soilborne fungus Polymyxa betae (25) .
• BNYW beet necrotic yellow vein virus
• a variety of such tolerance genes to the virus have been identified and, some have been successfully used in the breeding of commercial sugar beet varieties (29, 30, 31) . Only the use of BNYW-resistant or tolerant varieties will enable farmers to grow sugar beet plants m
• the expression of a certain level of resistance m the transgenic plant might be attributed to different mechanisms such as RNA co-suppression and not necessarily to the production of tne protein sequence.
• the virus sequence will be transferred m an appropriate cell or tissue culture of the plant species using an Agroba cterium mediated transformation system or a direct gene transfer method according to the constraints of the tissue culture or cell culture method which can be successfully applied m a given species A whole plant will be regenerated and the expression of the transgene will be characterized.
• sugar beet is known as a recalcitrant species m cell culture, limiting the extent of practical genetic engineering applications m that species, there are number of isolated reports of successful transformation and regeneration of whole plants (38) .
• a few examples of engineering tolerance to the BNYW by transforming and expressing the BNYW coat -protein sequence m the sugar beet genome have also been published (39, W091/13159) though they rarely report data on whole functional transgenic sugar beet plants (40) .
• reports show limited data on the level of resistance observed m infected conditions with transgenic sugar beet plants transformed with a gene encoding a BNYW coat-protein sequence (41, 42) .
• the coat-protem mediated resistance mechanism provides any potential for conferring to the sugar beet plant a total immunity to the B ⁇ YW- infection by inhibiting completely the virus multiplication and diffusion mechanisms.
• To identify a resistance mechanism which significantly blocks the spread of the virus at the early stage of the infection process would be a major step toward successfully developing such a transgenic resistance.
• such resistance would diversify the mechanisms of resistance available.
• BNY ⁇ N The genome of beet necrotic yellow vein benyvirus (BNY ⁇ N) consists of five plus-sense R ⁇ As , two of which (R ⁇ As 1 and 2) encode functions essential for infection of all plants while the other three (R ⁇ As 3, 4 and 5) are implicated m vector-mediated infections of host plants (Beta macrocarpa , Beta vulgar is , Spinacear oleracea, Chenopodium quinoa, etc.) roots (1).
• TGB triple gene block
• TGB genes and the corresponding proteins will be identified by the following terms: TGBl, TGB2 , TGB3 or by their encoded viral protein number P42, P13 and P15.
• TGB counterparts are present m other plant viruses and the characteristics of their TGB have allowed the classification of said viruses m two groups: the viruses of group I which include hordeiviruses, benyviruses, pecluviruses and pomoviruses and the viruses of group II represented by potexviruses and carlaviruses (4, 5, 6, 44) .
• capsid protein is also involved m the cell-to-cell movement of viruses.
• the development of a resistance to viral infections into a plant by blocking the cell-to-cell movement has been described for the potato viruses X (PVX) (45) and for the white clover mosaic virus (WC1MV) (46) m Nicotiana benthamiana .
• PVX potato viruses X
• WC1MV white clover mosaic virus
• the present invention aims to provide a new method for introducing various viral resistances into a cell and a plant and the viral resistant cell and plant obtained.
• a ma aim of the invention is to provide a new method for introducing BNY resistance into a cell and a plant and the BNYW-resistant cell and plant, particular a sugar beet cell and plant (Beta vulgar is ssp . ) , obtained.
• the present invention provides the use of an alternative sequence of plant virus, especially the BNY ⁇ /N, to obtain a high degree of tolerance to the viral infection, particular to ensure a rapid and total blocking of virus multiplication and diffusion mechanisms a plant, especially m the sugar beet plant (Beta vulgar i s) , including fodder beet, Swiss chard and table beet, which may also be subject to this viral infection.
• m the sugar beet plant Beta vulgar i s
• fodder beet including fodder beet, Swiss chard and table beet
• Expression of the resistance will be obtained m transgenic cell and plant, especially sugar beet cells and plants produced by the transformation method subject to the Patent Application WO95/10178 or by other transformation methods based on Agrobacteriu tumefaci ens or direct gene transfer.
• the transformation method as described WO95/10178 enables the production of large numbers of transformed plants, especially sugar beet plants, and will be preferred to develop transgenic plants which may be analysed and characterized for their level of viral resistance, especially BNYW Resistance, including their field evaluation.
• viruses having a TGB2 sequence In the table 1 are represented viruses having a TGB2 sequence, the molecular weight of TGB2 of said viruses, their host and references.
• the Inventors propose herewith a new method for providing resistance to plant viruses into a plant by blocking virus multiplication and diffusion mechanisms into said plant, especially into its root tissue.
• the Inventors describe hereafter the effect of the overexpression of TGB2 sequence alone or combination upon BNYW multiplication and diffusion mechanism plants of C . qumoa which are also the hosts of the BNYW virus and which could be more easily manipulated by the man skilled the art.
• BNY ⁇ /N does not require synthesis of viral coat protein for production of local lesions on leaves of hosts such as Chenopodium qumoa (7) , indicating that virion formation is not required for cell- to-cell movement.
• the manner which the TGB components assist m the movement process is not understood although computer-assisted sequence comparisons have detected characteristic conserved sequences which may provide clues to their function.
• the 5 ' -proximal TGB protein invariably contains a series of sequence motifs characteristic of an ATP/GTP-b dmg helicase while the second protein (TGB2) always has two potentially membrane-spanning hydrophobic domains separated by a hydrophilic sequence which contains a highly conserved peptide motif of unknown significance (6) .
• the present invention concerns a method for inducing viral resistance to a virus of group I comprising the triple gene block (TGB2) .
• Said viruses of group I comprise hordeiviruses , benyviruses, pecluviruses and pomoviruses, preferably viruses selected from the group consisting of the beet necrotic yellow vein virus, the barley stripe mosaic virus, the potato mop top virus, the peanut clump virus and tne beet soil -borne virus; said method comprises the following steps: - preparing a nucleotide construct comprising a nucleotide sequence corresponding to at least 70% of the wild-type nucleotide sequence of TGB2 of said group I virus or its corresponding cDNA, being operably linked to one or more regulatory sequence (s) active a plant,
• the nucleotide sequence corresponding to at least 70% of the wild-type nucleotide sequence of TGB2 or its corresponding cDNA comprise the substitution of at least one ammo acid into another different ammo acid m the TGB2 wild-type sequence SEQ ID NO. 1 (Fig. 1) .
• the substitution of at least one ammo acid into another different ammo acid is made m regions rich m hydrophilic ammo acids usually present at the surface of the corresponding protein m its native configuration.
• a modification is made m the hydrophilic region of the wild-type sequence downstream the N-terminal hydrophobic domain and ust upstream the conserved central domain.
• said ammo acids are each substituted by the ammo acid Alanme.
• the plant or plant cell is a plant or plant cell which may be infected by the above- described virus and is preferably selected from the group consisting of potato, barley, peanut and sugar beet.
• the present invention concerns also the obtained plant cell and transgenic (or transformed) plant (made of said plant cells) resistant to said viruses and comprising said nucleotide construct.
• a method wnich comprises the following steps : - preparing a nucleotide construct comprising a nucleotide sequence corresponding to at least 70%, preferably at least 80%, more preferably at least 90%, of the wild-type nucleotide sequence comprised between the nucleotides 3287 and 3643 of the 5' strand of the genomic or subgenomic wild-type RNA 2 of the BNYW or its corresponding cDNA, being operably linked to one or more regulatory sequence (s) active m a plant,
• nucleotide sequence comprised between the nucleotides 3287 and 3643 of the 5' strand of the genomic or subgenomic RNA 2 encoding the P13 protein is described the Fig. 1 (SEQ ID NO. 1) .
• SEQ ID NO. 1 SEQ ID NO. 1
• a preferred mutated nucleotide sequence and its corresponding mutated ammo acid sequence are described the following specification as SEQ ID NO. 3 (Fig. 2) .
• Another aspect of the present invention concerns a plant cell and a transgenic plant (made of said plant cells) resistant to BNYW and comprising a nucleotide construct having a nucleotide sequence corresponding to at least 70%, preferably at least 80%, more preferably at least 90%, of the nucleotide sequence comprised between the nucleotides 3287 and 3643 of the 5' strand of the genomic or subgenomic wild-type RNA 2 of BNY ⁇ /N or its corresponding cD ⁇ A, being operably linked to one or more regulatory sequence (s) active m the plant.
• said plant cell or transgenic plant (made of said plant cells) resistant to B ⁇ YVN is obtained by the method according to the invention.
• the variants of the wild-type nucleotide sequence comprise insertion, substitution or deletion of nucleotides encoding the same or different ammo ac ⁇ d(s) (see Fig 2) . Therefore, the present invention concerns also said variants of the nucleotide sequence of SEQ ID NO. 1, for example SEQ ID NO. 3, which present at least 70%, preferably at least 80%, more preferably at least 90%, homology with said nucleotide sequence and which are preferably able to hybridise to said nucleotide sequence m stringent or non-stringent conditions as described by Sambrook et al . , ⁇ 9.47-9.51 m Molecular Cloning : A Labora tory Manual , Cold Spring Harbor, Laboratory Press, Cold Spring Harbor, New York (1989) .
• a nucleotide sequence corresponding to at least 70%, preferably at least 80%, more preferably at least 90%, of the nucleotide sequence comprised between the nucleotides 3287 and 3643 of the 5' strand of the genomic or subgenomic wild-type RNA 2 of BNYW or its corresponding cDNA is preferably a sequence comprising a substitution of at least one ammo acid into another different ammo acid m the wild-type RNA2 sequence of the BNYW or its corresponding cDNA.
• said substitution of one or more ammo acids is a mutation which allows the substitution of one or more ammo acids into one or more Alanme ammo acids .
• said nucleotide sequence is SEQ ID NO . 3.
• said sequences are also able to induce BNYW resistance into a plant.
• induce a viral resistance into a plant mean inducing a possible reduction or a significant delay into the appearance of infection symptoms, virus multiplication or its diffusion mechanisms into the plant, especially m the root tissues.
• Fig. 3 are represented results snowing the capacity of a plant comoculated with virus containing a replicon construct with the nucleotide sequence according to the invention, especially the sequence SEQ ID NO. 3, to inhibit the movement by BNY ⁇ N m C. Qumoa .
• the infectious factor of B ⁇ Y ⁇ /N is shown by the appearance of local lesions of leaves of said plant after co- oculation of wild-type virus S12.
• Fig. 3 presents the number of local lesions upon leaves of a plant by a B ⁇ YW S12 isolate (comprising R ⁇ A1 and R ⁇ A2) when co- inoculated with various replicons incorporating either mutated sequences including SEQ ID NO. 3 identified Fig. 2 or a wild-type nucleotide sequence (T) .
• the regulatory sequence (s) of the nucleotide sequence according to the invention are promoter sequence (s) and terminator sequence (s) active into a plant.
• the nucleotide construct may also include a selectable marker gene, which could be used to identify the transformed cell or plant and express the nucleotide construct according to the invention
• the cell is a stomatal cell and the plant is a sugar beet (Beva vulga ⁇ s ssp . ) made of said cells .
• the promoter sequence is a constitutive or foreigner promoter sequence. Examples are 35S Cauliflower Mosaic Virus promoter sequence, polyubiquitin Arabidopsi s thai i ana promoter (43), a promoter which is mainly active in root tissues such as the par promoter of the haemoglobin gene from Perosponia andersonii (Landsman et al . , Mol. Gen . Genet. 214 : 68-73 (1988)) or a mixture thereof.
• a last aspect of the present invention is related to a transgenic plant tissue such as fruit, stem, root, tuber, seed of the transgenic plant according to the invention or a reproducible structure (preferably selected from the group consisting of calluses, buds or embryos) obtained from the transgenic plant or the cell according to the invention.
• a transgenic plant tissue such as fruit, stem, root, tuber, seed of the transgenic plant according to the invention or a reproducible structure (preferably selected from the group consisting of calluses, buds or embryos) obtained from the transgenic plant or the cell according to the invention.

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• 1999
  • 1999-03-16 EP EP99200773A patent/EP1038961A1/de not_active Withdrawn
• 2000
  • 2000-03-07 AU AU38105/00A patent/AU3810500A/en not_active Abandoned
  • 2000-03-07 EA EA200100884A patent/EA005168B1/ru not_active IP Right Cessation
  • 2000-03-07 HU HU0200240A patent/HUP0200240A3/hu unknown
  • 2000-03-07 EP EP00916929A patent/EP1161538A2/de not_active Withdrawn
  • 2000-03-07 WO PCT/EP2000/002176 patent/WO2000055301A2/en not_active Application Discontinuation
  • 2000-03-07 EE EEP200100481A patent/EE200100481A/xx unknown
  • 2000-03-07 PL PL00351521A patent/PL351521A1/xx not_active Application Discontinuation
  • 2000-03-07 SK SK1284-2001A patent/SK12842001A3/sk not_active Application Discontinuation

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