DK3692173T3 - Vurdering af cellulær jak-stat1/2-signalvejsaktivitet under anvendelse af matematisk modellering af målgenekspression - Google Patents

Vurdering af cellulær jak-stat1/2-signalvejsaktivitet under anvendelse af matematisk modellering af målgenekspression Download PDF

Info

Publication number
DK3692173T3
DK3692173T3 DK18773226.8T DK18773226T DK3692173T3 DK 3692173 T3 DK3692173 T3 DK 3692173T3 DK 18773226 T DK18773226 T DK 18773226T DK 3692173 T3 DK3692173 T3 DK 3692173T3
Authority
DK
Denmark
Prior art keywords
moal
stat1
evaluation
gene expression
mathematical modeling
Prior art date
Application number
DK18773226.8T
Other languages
English (en)
Inventor
Wilhelmus Franciscus Johannes Verhaegh
meng Dou
De Stolpe Anja Van
Rick Velter
Original Assignee
Koninklijke Philips Nv
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Koninklijke Philips Nv filed Critical Koninklijke Philips Nv
Application granted granted Critical
Publication of DK3692173T3 publication Critical patent/DK3692173T3/da

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6851Quantitative amplification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809Methods for determination or identification of nucleic acids involving differential detection
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N7/00Computing arrangements based on specific mathematical models
    • G06N7/01Probabilistic graphical models, e.g. probabilistic networks
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G16B5/20Probabilistic models
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10Gene or protein expression profiling; Expression-ratio estimation or normalisation

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Pathology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Probability & Statistics with Applications (AREA)
  • Oncology (AREA)
  • General Physics & Mathematics (AREA)
  • Physiology (AREA)
  • Hospice & Palliative Care (AREA)
  • Mathematical Analysis (AREA)
  • Databases & Information Systems (AREA)
  • Bioethics (AREA)
  • Algebra (AREA)
  • Mathematical Physics (AREA)
  • Mathematical Optimization (AREA)
  • Pure & Applied Mathematics (AREA)
  • Data Mining & Analysis (AREA)
DK18773226.8T 2017-10-02 2018-09-27 Vurdering af cellulær jak-stat1/2-signalvejsaktivitet under anvendelse af matematisk modellering af målgenekspression DK3692173T3 (da)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
EP17194291.5A EP3461915A1 (en) 2017-10-02 2017-10-02 Assessment of jak-stat1/2 cellular signaling pathway activity using mathematical modelling of target gene expression
PCT/EP2018/076334 WO2019068562A1 (en) 2017-10-02 2018-09-27 EVALUATION OF THE ACTIVITY OF THE JAK-STAT1 / 2 CELL SIGNALING PATH USING MATHEMATICAL MODELING OF A TARGET GENE EXPRESSION

Publications (1)

Publication Number Publication Date
DK3692173T3 true DK3692173T3 (da) 2021-05-31

Family

ID=60037387

Family Applications (1)

Application Number Title Priority Date Filing Date
DK18773226.8T DK3692173T3 (da) 2017-10-02 2018-09-27 Vurdering af cellulær jak-stat1/2-signalvejsaktivitet under anvendelse af matematisk modellering af målgenekspression

Country Status (8)

Country Link
US (1) US11649488B2 (da)
EP (2) EP3461915A1 (da)
JP (1) JP6931125B2 (da)
CN (1) CN111479933A (da)
CA (1) CA3078278A1 (da)
DK (1) DK3692173T3 (da)
ES (1) ES2868887T3 (da)
WO (1) WO2019068562A1 (da)

Families Citing this family (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3882363A1 (en) 2020-03-17 2021-09-22 Koninklijke Philips N.V. Prognostic pathways for high risk sepsis patients
EP3978628A1 (en) 2020-10-01 2022-04-06 Koninklijke Philips N.V. Prognostic pathways for viral infections
EP4136261A1 (en) 2020-04-16 2023-02-22 InnoSIGN B.V. Prognostic pathways for viral infections
EP3940704A1 (en) * 2020-07-14 2022-01-19 Koninklijke Philips N.V. Method for determining the differentiation state of a stem cell
EP3960875A1 (en) 2020-08-28 2022-03-02 Koninklijke Philips N.V. Pcr method and kit for determining pathway activity
EP3974540A1 (en) 2020-09-25 2022-03-30 Koninklijke Philips N.V. Method for predicting immunotherapy resistance
EP4015651A1 (en) 2020-12-17 2022-06-22 Koninklijke Philips N.V. Treatment prediction and effectiveness of anti-tnf alpha treatment in ibd patients
EP4039825A1 (en) 2021-02-09 2022-08-10 Koninklijke Philips N.V. Comparison and standardization of cell and tissue culture
JP2024514404A (ja) 2021-03-11 2024-04-02 コーニンクレッカ フィリップス エヌ ヴェ 高リスク敗血症患者のための予後経路

Family Cites Families (51)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4711955A (en) 1981-04-17 1987-12-08 Yale University Modified nucleotides and methods of preparing and using same
US6004761A (en) 1986-11-19 1999-12-21 Sanofi Method for detecting cancer using monoclonal antibodies to new mucin epitopes
US5660985A (en) 1990-06-11 1997-08-26 Nexstar Pharmaceuticals, Inc. High affinity nucleic acid ligands containing modified nucleotides
US5436134A (en) 1993-04-13 1995-07-25 Molecular Probes, Inc. Cyclic-substituted unsymmetrical cyanine dyes
US5658751A (en) 1993-04-13 1997-08-19 Molecular Probes, Inc. Substituted unsymmetrical cyanine dyes with selected permeability
US6720149B1 (en) 1995-06-07 2004-04-13 Affymetrix, Inc. Methods for concurrently processing multiple biological chip assays
US5545531A (en) 1995-06-07 1996-08-13 Affymax Technologies N.V. Methods for making a device for concurrently processing multiple biological chip assays
US6146897A (en) 1995-11-13 2000-11-14 Bio-Rad Laboratories Method for the detection of cellular abnormalities using Fourier transform infrared spectroscopy
US6391550B1 (en) 1996-09-19 2002-05-21 Affymetrix, Inc. Identification of molecular sequence signatures and methods involving the same
NZ516848A (en) 1997-06-20 2004-03-26 Ciphergen Biosystems Inc Retentate chromatography apparatus with applications in biology and medicine
DE69823206T2 (de) 1997-07-25 2004-08-19 Affymetrix, Inc. (a Delaware Corp.), Santa Clara Verfahren zur herstellung einer bio-informatik-datenbank
US6953662B2 (en) 1997-08-29 2005-10-11 Human Genome Sciences, Inc. Follistatin-3
US6020135A (en) 1998-03-27 2000-02-01 Affymetrix, Inc. P53-regulated genes
US6884578B2 (en) 2000-03-31 2005-04-26 Affymetrix, Inc. Genes differentially expressed in secretory versus proliferative endometrium
US6783934B1 (en) 2000-05-01 2004-08-31 Cepheid, Inc. Methods for quantitative analysis of nucleic acid amplification reaction
CN1262337C (zh) 2000-11-16 2006-07-05 赛弗根生物系统股份有限公司 质谱分析方法
AU2002314715B2 (en) 2001-02-16 2006-07-27 Ciphergen Biosystems, Inc. Method for correlating gene expression profiles with protein expression profiles
JP2005519624A (ja) 2002-03-13 2005-07-07 ジェノミック ヘルス, インコーポレイテッド 生検腫瘍組織での遺伝子発現プロファイリング
US7097976B2 (en) 2002-06-17 2006-08-29 Affymetrix, Inc. Methods of analysis of allelic imbalance
JP4606879B2 (ja) 2002-11-15 2011-01-05 ジェノミック ヘルス, インコーポレイテッド Egfr陽性癌の遺伝子発現プロファイリング
US20040231909A1 (en) 2003-01-15 2004-11-25 Tai-Yang Luh Motorized vehicle having forward and backward differential structure
PL3470535T3 (pl) 2003-06-24 2020-08-24 Genomic Health, Inc. Prognozowanie prawdopodobieństwa ponownego wystąpienia raka
US7526387B2 (en) 2003-07-10 2009-04-28 Genomic Health, Inc. Expression profile algorithm and test for cancer prognosis
JP2005176804A (ja) 2003-12-24 2005-07-07 Japan Health Science Foundation Stat3の活性化能を指標とする肝疾患治療剤のスクリーニング法
CA3061785A1 (en) 2004-11-05 2006-05-18 Genomic Health, Inc. Predicting response to chemotherapy using gene expression markers
CA2602951A1 (en) 2005-03-23 2006-09-28 Bio-Rad Laboratories, Inc. Diverse chemical libraries bound to small particles with paramagnetic properties
US7919261B2 (en) 2005-12-05 2011-04-05 Merck Sharp & Dohme Corp. Methods for predicting treatment response based on the expression profiles of protein and transcription biomarkers
KR100806274B1 (ko) 2005-12-06 2008-02-22 한국전자통신연구원 멀티 쓰레디드 프로세서 기반의 병렬 시스템을 위한 적응형실행 방법
JP5297202B2 (ja) 2006-01-11 2013-09-25 ジェノミック ヘルス, インコーポレイテッド 結腸直腸癌の予後のための遺伝子発現マーカー
US7888019B2 (en) 2006-03-31 2011-02-15 Genomic Health, Inc. Genes involved estrogen metabolism
US8518639B2 (en) 2006-04-11 2013-08-27 Bio-Rad Innovations HPV detection and quantification by real-time multiplex amplification
CA2706881A1 (en) 2007-11-30 2009-06-11 Brian Z. Ring Tle3 as a marker for chemotherapy
WO2009114836A1 (en) 2008-03-14 2009-09-17 Genomic Health, Inc. Gene expression markers for prediction of patient response to chemotherapy
GB2477705B (en) 2008-11-17 2014-04-23 Veracyte Inc Methods and compositions of molecular profiling for disease diagnostics
US8765383B2 (en) 2009-04-07 2014-07-01 Genomic Health, Inc. Methods of predicting cancer risk using gene expression in premalignant tissue
WO2011014697A1 (en) 2009-07-31 2011-02-03 The Translational Genomics Research Institute Methods of assessing a risk of cancer progression
US8451450B2 (en) 2009-09-14 2013-05-28 Bio-Rad Laboratories, Inc. Near real time optical phase conjugation
WO2011146619A2 (en) 2010-05-19 2011-11-24 The Regents Of The University Of California Systems and methods for identifying drug targets using biological networks
US8703736B2 (en) 2011-04-04 2014-04-22 The Translational Genomics Research Institute Therapeutic target for pancreatic cancer cells
US20130042333A1 (en) * 2011-05-06 2013-02-14 Jean-Gabriel JUDDE Markers for cancer prognosis and therapy and methods of use
KR20140044341A (ko) 2011-06-02 2014-04-14 알막 다이아그노스틱스 리미티드 암에 대한 분자적 진단 검사
EP2549399A1 (en) 2011-07-19 2013-01-23 Koninklijke Philips Electronics N.V. Assessment of Wnt pathway activity using probabilistic modeling of target gene expression
MX366164B (es) 2012-01-31 2019-07-01 Genomic Health Inc Algoritmo de perfil de expresion genica y prueba para determinar la prognosis de cancer de prostata.
US10081838B2 (en) 2012-05-03 2018-09-25 Qiagen Sciences, Llc Gene expression signature for IL-6/STAT3 signaling pathway and use thereof
RU2721130C2 (ru) * 2012-12-26 2020-05-18 Конинклейке Филипс Н.В. Оценка активности путей клеточной сигнализации с помощью линейной комбинации(ий) экспрессий генов-мишеней
KR102256141B1 (ko) 2013-04-26 2021-05-27 코닌클리케 필립스 엔.브이. 다수의 세포 신호전달 경로 활성을 이용하는 치료 반응의 의학적 예후 및 예측
WO2015050844A1 (en) 2013-10-01 2015-04-09 Dana-Farber Cancer Institute, Inc. Methods of treating cancer with atovaquone-related compounds
JP6077178B2 (ja) * 2014-01-03 2017-02-08 コーニンクレッカ フィリップス エヌ ヴェKoninklijke Philips N.V. 標的遺伝子発現の数学的モデリングを用いるpi3k細胞内シグナル伝達経路活性の評価
JP6704861B2 (ja) 2014-06-16 2020-06-03 ワールドワイド・イノベイティブ・ネットワークWorldwide Innovative Network 癌処置のための個別化三剤治療を選択するための方法
EP3210144B1 (en) * 2014-10-24 2020-10-21 Koninklijke Philips N.V. Medical prognosis and prediction of treatment response using multiple cellular signaling pathway activities
AU2015334840B2 (en) * 2014-10-24 2021-10-21 Innosign B.V. Assessment of TGF-beta cellular signaling pathway activity using mathematical modelling of target gene expression

Also Published As

Publication number Publication date
JP2020535822A (ja) 2020-12-10
EP3461915A1 (en) 2019-04-03
ES2868887T3 (es) 2021-10-22
JP6931125B2 (ja) 2021-09-01
EP3692173A1 (en) 2020-08-12
CA3078278A1 (en) 2019-04-11
US11649488B2 (en) 2023-05-16
US20190100795A1 (en) 2019-04-04
CN111479933A (zh) 2020-07-31
WO2019068562A1 (en) 2019-04-11
EP3692173B1 (en) 2021-03-31

Similar Documents

Publication Publication Date Title
DK3692173T3 (da) Vurdering af cellulær jak-stat1/2-signalvejsaktivitet under anvendelse af matematisk modellering af målgenekspression
DK3334837T3 (da) Vurdering af nfkb-cellulær signaleringsvejaktivitet under anvendelse af matematisk modellering af målgenekspression
DK3210142T3 (da) Vurdering af tgf-cellulær signaleringsvejaktivitet under anvendelse af matematisk modellering af målgenekspression
DK3584654T3 (da) Hierarkisk fordelt ledger
DK3288294T3 (da) In-situ kompensation af akustiske målinger
DE112019002623T8 (de) Distanzmesssystem
DK3528475T3 (da) Målesystem
DK3706699T3 (da) Badekonstruktion
DE112017003142T8 (de) Messung der Aktivität der LP-PLA2
DK3737482T3 (da) Legetøjskonstruktionselement
DK3714101T3 (da) Sporskifte
UA41559S (uk) Ваги торговельні
UA41937S (uk) Ваги торгівельні
UA41573S (uk) Ваги торговельні
NO20180824A1 (no) Brokonstruksjon
KR20210030271A9 (ko) 스텐트
UA41578S (uk) Ложка столова
TWI799529B (zh) 放大器
ES1219205Y (es) Cepillo ampliable
ES1232839Y (es) Maqueta tiflológica sensor-táctil
ES1218142Y (es) Pantalon transformable
JP1651883S (ja) 増幅器
TH1902001643S (th) ชุดกระโปรง
UA35073S (uk) Комплект логопедичних зондів
TH190865S (th) ปากกา