DE60018052D1 - Vergleichende fluoreszenz-hybridisierung auf oligonukleotid mikroarrays - Google Patents

Vergleichende fluoreszenz-hybridisierung auf oligonukleotid mikroarrays

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Publication number
DE60018052D1
DE60018052D1 DE60018052T DE60018052T DE60018052D1 DE 60018052 D1 DE60018052 D1 DE 60018052D1 DE 60018052 T DE60018052 T DE 60018052T DE 60018052 T DE60018052 T DE 60018052T DE 60018052 D1 DE60018052 D1 DE 60018052D1
Authority
DE
Germany
Prior art keywords
nucleic acid
acid sequences
oligonucleotide microarrays
fluorescence hybridization
solid surface
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE60018052T
Other languages
English (en)
Other versions
DE60018052T2 (de
Inventor
W Gray
Dan Pinkel
G Albertson
C Collins
A Baldocchi
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
University of California
Original Assignee
University of California
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by University of California filed Critical University of California
Publication of DE60018052D1 publication Critical patent/DE60018052D1/de
Application granted granted Critical
Publication of DE60018052T2 publication Critical patent/DE60018052T2/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
    • C12Q1/6855—Ligating adaptors

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
DE60018052T 1999-04-29 2000-04-28 Vergleichende fluoreszenz-hybridisierung auf oligonukleotid mikroarrays Expired - Lifetime DE60018052T2 (de)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US09/302,056 US6465182B1 (en) 1999-04-29 1999-04-29 Comparative fluorescence hybridization to oligonucleotide microarrays
US302056 1999-04-29
PCT/US2000/011433 WO2000066779A1 (en) 1999-04-29 2000-04-28 Comparative fluorescence hybridization to oligonucleotide microarrays

Publications (2)

Publication Number Publication Date
DE60018052D1 true DE60018052D1 (de) 2005-03-17
DE60018052T2 DE60018052T2 (de) 2006-05-18

Family

ID=23166074

Family Applications (1)

Application Number Title Priority Date Filing Date
DE60018052T Expired - Lifetime DE60018052T2 (de) 1999-04-29 2000-04-28 Vergleichende fluoreszenz-hybridisierung auf oligonukleotid mikroarrays

Country Status (7)

Country Link
US (1) US6465182B1 (de)
EP (1) EP1173621B1 (de)
AT (1) ATE288963T1 (de)
CA (1) CA2369878C (de)
DE (1) DE60018052T2 (de)
ES (1) ES2235882T3 (de)
WO (1) WO2000066779A1 (de)

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* Cited by examiner, † Cited by third party
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ATE537270T1 (de) * 1997-10-30 2011-12-15 Cold Spring Harbor Lab Sondenanordnungen und deren verwendungen für verfahren zur dns-unterscheidung
US20030087231A1 (en) * 2000-05-19 2003-05-08 Albertson Donna G. Methods and compositions for preparation of a polynucleotide array
EP1343008A4 (de) * 2000-11-13 2007-08-22 Toyo Kohan Co Ltd Hybridisierungsträger und verfahren zur immobilisierung von hybriden
US7414111B2 (en) 2001-09-19 2008-08-19 Alexion Pharmaceuticals, Inc. Engineered templates and their use in single primer amplification
DE60234369D1 (de) * 2001-09-19 2009-12-24 Alexion Pharma Inc Manipulierte matrizen und ihre verwendung bei der single-primer-amplifikation
US20030186220A1 (en) * 2002-03-28 2003-10-02 Jizhong Zhou Detecting microorganisms using whole genomic DNA or RNA microarray
US9388459B2 (en) * 2002-06-17 2016-07-12 Affymetrix, Inc. Methods for genotyping
US7822555B2 (en) 2002-11-11 2010-10-26 Affymetrix, Inc. Methods for identifying DNA copy number changes
EP1576192B1 (de) * 2002-12-23 2014-10-29 Agilent Technologies, Inc. Vergleichende genomischehybridisierungstests unter verwendung von merkmalen immobilisierteroligonukleotide sowie zusammensetzungen zur durchführung davon
US20040166518A1 (en) * 2003-01-02 2004-08-26 The Regents Of The University Of California Multilabeling mouse FISH assay for detecting structural and numerical chromosomal abnormalities
NZ544235A (en) * 2003-05-23 2009-12-24 Cold Spring Harbor Lab Virtual representations of nucleotide sequences
US7211384B2 (en) 2003-05-28 2007-05-01 Agilent Technologies, Inc. Comparative genomic hybridization assays using immobilized oligonucleotide targets with initially small sample sizes and compositions for practicing the same
US7108979B2 (en) * 2003-09-03 2006-09-19 Agilent Technologies, Inc. Methods to detect cross-contamination between samples contacted with a multi-array substrate
US20050147975A1 (en) * 2003-12-24 2005-07-07 Schembri Carol T. Methods and compositions for amplification of genomic DNA
WO2005079474A2 (en) * 2004-02-17 2005-09-01 The Regents Of The University Of California Detection of nucleic acid sequence differences by comparative genomic hybridization
US8321138B2 (en) * 2005-07-29 2012-11-27 Agilent Technologies, Inc. Method of characterizing quality of hybridized CGH arrays
US20070031883A1 (en) * 2004-03-04 2007-02-08 Kincaid Robert H Analyzing CGH data to identify aberrations
US20050233339A1 (en) * 2004-04-20 2005-10-20 Barrett Michael T Methods and compositions for determining the relationship between hybridization signal of aCGH probes and target genomic DNA copy number
EP1766061B1 (de) * 2004-05-20 2013-07-17 Quest Diagnostics Investments Incorporated Vergleichende einfachmarkierung-hybridisierung
EP1774043A4 (de) * 2004-05-28 2009-09-02 Dana Farber Cancer Inst Inc Zusammensetzungen, kits und verfahren zur identifizierung, beurteilung, vorbeugung und therapie von krebs
US20060035258A1 (en) * 2004-08-06 2006-02-16 Affymetrix, Inc. Methods for identifying DNA copy number changes
US20060078899A1 (en) * 2004-10-12 2006-04-13 Scheffer Alicia F Methods and compositions for reducing label variation in array-based comparative genome hybridization assays
US20060080043A1 (en) * 2004-10-12 2006-04-13 Sampas Nicholas M Comparative genomic hybridization significance analysis using data smoothing with shaped response functions
US20070099227A1 (en) * 2004-10-12 2007-05-03 Curry Bo U Significance analysis using data smoothing with shaped response functions
US20060110744A1 (en) * 2004-11-23 2006-05-25 Sampas Nicolas M Probe design methods and microarrays for comparative genomic hybridization and location analysis
US20070020654A1 (en) * 2005-05-19 2007-01-25 Affymetrix, Inc. Methods and kits for preparing nucleic acid samples
ES2371664T3 (es) * 2005-06-03 2012-01-09 Beacon Biotechnology Llc Ensayo de ácidos nucleicos de proximidad de quimioluminiscencia.
EP1939287B1 (de) 2005-08-12 2016-11-23 Fuso Pharmaceutical Industries, Ltd. Für eine trophektodermale zelle spezifisches gentransfer-verfahren
US20070048743A1 (en) * 2005-08-26 2007-03-01 Sampas Nicholas M Methods and compositions for assessing candidate aCGH probe nucleic acids
US20070087355A1 (en) * 2005-10-14 2007-04-19 Barrett Michael T Comparative genomic hybridization assays and compositions for practicing the same
US11306351B2 (en) 2005-12-21 2022-04-19 Affymetrix, Inc. Methods for genotyping
US20080090236A1 (en) * 2006-10-13 2008-04-17 Yakhini Zohar H Methods and systems for identifying tumor progression in comparative genomic hybridization data
US20080102453A1 (en) * 2006-10-31 2008-05-01 Jayati Ghosh Methods and systems and analysis of CGH data
US20080207960A1 (en) * 2007-02-28 2008-08-28 Eric Lin Methods, compositions, and kits for post-hybridization processing of arrays
US8200440B2 (en) 2007-05-18 2012-06-12 Affymetrix, Inc. System, method, and computer software product for genotype determination using probe array data
WO2011011426A2 (en) 2009-07-20 2011-01-27 Bar Harbor Biotechnology, Inc. Methods for assessing disease risk
US8774488B2 (en) 2010-03-11 2014-07-08 Cellscape Corporation Method and device for identification of nucleated red blood cells from a maternal blood sample
US11094398B2 (en) 2014-10-10 2021-08-17 Life Technologies Corporation Methods for calculating corrected amplicon coverages

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE69330750T2 (de) 1992-03-04 2002-07-04 Univ California Vergleichende genomhybridisierung
US5830645A (en) * 1994-12-09 1998-11-03 The Regents Of The University Of California Comparative fluorescence hybridization to nucleic acid arrays

Also Published As

Publication number Publication date
EP1173621B1 (de) 2005-02-09
US6465182B1 (en) 2002-10-15
EP1173621A4 (de) 2002-10-09
EP1173621A1 (de) 2002-01-23
CA2369878C (en) 2009-12-08
ES2235882T3 (es) 2005-07-16
CA2369878A1 (en) 2000-11-09
ATE288963T1 (de) 2005-02-15
DE60018052T2 (de) 2006-05-18
WO2000066779A1 (en) 2000-11-09

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