CY1105063T1 - Η χρηση της διepγασιας χτενισματος για την αναγνωριση των σημειων εναρξης αναδιπλασιασμου του dna - Google Patents

Η χρηση της διepγασιας χτενισματος για την αναγνωριση των σημειων εναρξης αναδιπλασιασμου του dna

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Publication number
CY1105063T1
CY1105063T1 CY20061100908T CY061100908T CY1105063T1 CY 1105063 T1 CY1105063 T1 CY 1105063T1 CY 20061100908 T CY20061100908 T CY 20061100908T CY 061100908 T CY061100908 T CY 061100908T CY 1105063 T1 CY1105063 T1 CY 1105063T1
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CY
Cyprus
Prior art keywords
replication
dna
initiation sites
genome
combing
Prior art date
Application number
CY20061100908T
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English (en)
Inventor
Aaron Bensimon
John Herrick
Olivier Hyrien
Original Assignee
Institut Pasteur
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Filing date
Publication date
Application filed by Institut Pasteur filed Critical Institut Pasteur
Publication of CY1105063T1 publication Critical patent/CY1105063T1/el

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6804Nucleic acid analysis using immunogens

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Pathology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Saccharide Compounds (AREA)
  • Polysaccharides And Polysaccharide Derivatives (AREA)

Abstract

Τα ευκαρυωτικά γονιδιώματα διπλασιάζονται από την ενεργοποίηση πολλαπλών αμφίδρομων σημείων έναρξης του αναδιπλασιασμού. Τα προγράμματα αναδιπλασιασμού αυτών των κυττάρων εξαρτώνται από τη περιστασιακή και χωροταξική οργάνωση των σημείων έναρξης του αναδιπλασιασμού σε όλη την έκταση του γονιδιώματος. Για να ερευνηθεί το πρόγραμμα του αναδιπλασιασμού σε ένα ανώτερο ευκαρυωτικό, χρησιμοποιήσαμε μια τεχνική που ονομάζεται μοριακό χτένισμα. Αυτή η τεχνική επιτρέπει μια ποσοτική ανάλυση του αναδιπλασιασμού του DNA ενός γονιδιώματος ευρείας βάσης. Σαν σύστημα μοντέλο, η χρωματίνη του σπέρματος του Xenopus laevis σημάνθηκε διαφορικά σε διαδοχικά χρονικά σημεία μετά την έναρξη της σύνθεσης του DNA. Το γενωμικό DNA στη συνέχεια εξήχθη και χτενίστηκε επί μιας γυάλινης επιφάνειας. Απ' ευθείας μετρήσεις που πραγματοποιήθηκαν επί του σημασμένου DNA, παρείχαν μια κατανοητή ανάλυση της χωροταξικής και περιστασιακής οργάνωσης του προγράμματος αναδιπλασιασμού του πρώιμου εμβρύου του Χ. laevis και αποκάλυψαν ότι ο αριθμός των σημείων έναρξης αναδιπλασιασμού που ενεργοποιείται ανά κιλοβάσεις, αυξάνει σε όλη τη χρονική έκταση της σύνθεσης του DNA.
CY20061100908T 1999-05-28 2006-07-03 Η χρηση της διepγασιας χτενισματος για την αναγνωριση των σημειων εναρξης αναδιπλασιασμου του dna CY1105063T1 (el)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US13679299P 1999-05-28 1999-05-28
PCT/IB2000/001240 WO2000073503A2 (en) 1999-05-28 2000-05-29 Use of the combing process for the identification of dna origins of replication

Publications (1)

Publication Number Publication Date
CY1105063T1 true CY1105063T1 (el) 2010-03-03

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Application Number Title Priority Date Filing Date
CY20061100908T CY1105063T1 (el) 1999-05-28 2006-07-03 Η χρηση της διepγασιας χτενισματος για την αναγνωριση των σημειων εναρξης αναδιπλασιασμου του dna

Country Status (12)

Country Link
US (3) US6248537B1 (el)
EP (1) EP1192283B1 (el)
AT (1) ATE330035T1 (el)
AU (1) AU6590400A (el)
CA (1) CA2375534C (el)
CY (1) CY1105063T1 (el)
DE (1) DE60028768T2 (el)
DK (1) DK1192283T3 (el)
ES (1) ES2265962T3 (el)
IL (1) IL146796A0 (el)
PT (1) PT1192283E (el)
WO (1) WO2000073503A2 (el)

Families Citing this family (28)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2005504275A (ja) * 2001-09-18 2005-02-10 ユー.エス. ジェノミクス, インコーポレイテッド 高分解能線形解析用のポリマーの差示的タグ付け
US8423294B2 (en) * 2001-09-18 2013-04-16 Pathogenetix, Inc. High resolution linear analysis of polymers
AU2003238796A1 (en) * 2002-05-28 2003-12-12 U.S. Genomics, Inc. Methods and apparati using single polymer analysis
WO2004038037A2 (en) * 2002-09-20 2004-05-06 Intel Corporation Controlled alignment of nano-barcodes encoding specific information for scanning probe microscopy (spm) reading
US7361821B2 (en) 2002-09-20 2008-04-22 Intel Corporation Controlled alignment of nanobarcodes encoding specific information for scanning probe microscopy (SPM) reading
US7606403B2 (en) 2002-10-17 2009-10-20 Intel Corporation Model-based fusion of scanning probe microscopic images for detection and identification of molecular structures
JP2006522940A (ja) * 2003-04-10 2006-10-05 ユー.エス. ジェノミクス, インコーポレイテッド マイクロチャネルにおけるポリマーの操作
US20050064435A1 (en) * 2003-09-24 2005-03-24 Xing Su Programmable molecular barcodes
US20050147976A1 (en) * 2003-12-29 2005-07-07 Xing Su Methods for determining nucleotide sequence information
US20050151126A1 (en) * 2003-12-31 2005-07-14 Intel Corporation Methods of producing carbon nanotubes using peptide or nucleic acid micropatterning
US7977048B2 (en) * 2004-01-13 2011-07-12 Pathogenetix, Inc. Detection and quantification of analytes in solution using polymers
EP1711163A2 (en) * 2004-02-05 2006-10-18 Baxter International Inc. Dispersions prepared by use of self-stabilizing agents
US20050196790A1 (en) * 2004-02-05 2005-09-08 U.S. Genomics, Inc. Methods for detection and quantitation of minimum length polymers
WO2006017274A2 (en) * 2004-07-13 2006-02-16 U.S. Genomics, Inc. Systems and methods for sample modification using fluidic chambers
US7736818B2 (en) 2004-12-27 2010-06-15 Inphase Technologies, Inc. Holographic recording medium and method of making it
US20070128083A1 (en) * 2005-07-18 2007-06-07 U.S. Genomics, Inc. Microfluidic methods and apparatuses for sample preparation and analysis
WO2007056250A2 (en) * 2005-11-04 2007-05-18 U.S. Genomics, Inc. Heterogeneous assay of analytes in solution using polymers
EP2175037B1 (en) 2008-09-26 2017-10-11 Genomic Vision Method for analyzing D4Z4 tandem repeat arrays of nucleic acid and kit therefore
CA2796294C (en) 2010-04-23 2019-03-26 Genomic Vision Diagnosis of viral infections by detection of genomic and infectious viral dna by molecular combing
CA2811716A1 (en) 2010-09-24 2012-03-29 Genomic Vision A method for detecting, quantifying and mapping damage and/or repair of dna strands
US20130084564A1 (en) 2011-06-03 2013-04-04 Genomic Vision Assessment of cancer risk based on rnu2 cnv and interplay between rnu2 cnv and brca1
US20180135080A1 (en) 2016-11-15 2018-05-17 Genomic Vision Sa Method for the monitoring of modified nucleases induced-gene editing events by molecular combing
CN110199031A (zh) 2016-11-29 2019-09-03 基因组影像公司 设计用于分析感兴趣的遗传区域中的特定事件的一组多核苷酸序列的方法
WO2019077412A1 (en) 2017-10-16 2019-04-25 Genomic Vision DETECTION, MEASUREMENT AND ANALYSIS OF DNA REPLICATION SIGNALS
US20230235379A1 (en) 2020-04-30 2023-07-27 Dimensiongen Devices and methods for macromolecular manipulation
US20230321653A1 (en) 2020-06-01 2023-10-12 Dimensiongen Devices and methods for cytogenetic analysis
WO2022035729A1 (en) 2020-08-10 2022-02-17 Dimensiongen Devices and methods for multi-dimensional genome analysis
WO2023055776A1 (en) 2021-09-29 2023-04-06 Michael David Austin Devices and methods for interrogating macromolecules

Family Cites Families (37)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4278651A (en) 1978-09-27 1981-07-14 Becton Dickinson & Company Supported receptor and use thereof in an assay
US4698302A (en) 1983-05-12 1987-10-06 Advanced Magnetics, Inc. Enzymatic reactions using magnetic particles
US4554088A (en) 1983-05-12 1985-11-19 Advanced Magnetics Inc. Magnetic particles for use in separations
GB8314523D0 (en) 1983-05-25 1983-06-29 Lowe C R Diagnostic device
US4539061A (en) 1983-09-07 1985-09-03 Yeda Research And Development Co., Ltd. Process for the production of built-up films by the stepwise adsorption of individual monolayers
US4724207A (en) 1984-02-02 1988-02-09 Cuno Incorporated Modified siliceous chromatographic supports
US5447841A (en) 1986-01-16 1995-09-05 The Regents Of The Univ. Of California Methods for chromosome-specific staining
DE3717210C2 (de) 1987-05-22 1993-11-25 Diagen Inst Molekularbio Verfahren zur Modifizierung von Nukleinsäuren
US5098977A (en) 1987-09-23 1992-03-24 Board Of Regents, The University Of Texas System Methods and compositions for providing articles having improved biocompatability characteristics
US4921809A (en) 1987-09-29 1990-05-01 Findley Adhesives, Inc. Polymer coated solid matrices and use in immunoassays
FR2634023B1 (fr) 1988-07-08 1994-03-25 Bio Merieux Reactif sous forme de support solide permettant de fixer par covalence un ligand biologique amine, sa preparation et son utilisation
US5102798A (en) 1988-09-08 1992-04-07 Allage Associates Surface functionalized Langmuir-Blodgett films for immobilization of active moieties
US5237016A (en) 1989-01-05 1993-08-17 Siska Diagnostics, Inc. End-attachment of oligonucleotides to polyacrylamide solid supports for capture and detection of nucleic acids
JP2910929B2 (ja) 1989-03-23 1999-06-23 浜松ホトニクス株式会社 磁気粒子よりなる粒子の表面改質方法
EP0391674B1 (en) 1989-04-05 1996-03-20 New York University A method for characterising particles
US5240846A (en) 1989-08-22 1993-08-31 The Regents Of The University Of Michigan Gene therapy vector for cystic fibrosis
US5232829A (en) 1989-09-29 1993-08-03 Hoffmann-La Roche Inc. Detection of chlamydia trachomatis by polymerase chain reaction using biotin labelled lina primers and capture probes
US5215882A (en) 1989-11-30 1993-06-01 Ortho Diagnostic Systems, Inc. Method of immobilizing nucleic acid on a solid surface for use in nucleic acid hybridization assays
FR2656319B1 (fr) 1989-12-27 1992-03-20 Rhone Poulenc Chimie Microspheres composites magnetisables a base d'un polymere organosilicie reticule, leur procede de preparation et leur application en biologie.
US5079169A (en) 1990-05-22 1992-01-07 The Regents Of The Stanford Leland Junior University Method for optically manipulating polymer filaments
US5200315A (en) 1990-07-25 1993-04-06 Eastman Kodak Company Particulate biologically active reagent containing polyoxyalkylene side chains, analytical element and methods for use of the reagent
US5264343A (en) * 1990-08-31 1993-11-23 Eleanor Roosevelt Institute Method for distinguishing normal and cancer cells
EP0640147A1 (en) 1992-05-07 1995-03-01 Ig Laboratories Inc. Methods for high resolution gene mapping
CA2098960C (en) 1992-07-10 2004-11-02 Richard Barner Bio specifically recognizing surfaces on solid supports and method for their preparation
US5372930A (en) 1992-09-16 1994-12-13 The United States Of America As Represented By The Secretary Of The Navy Sensor for ultra-low concentration molecular recognition
WO1994016104A1 (en) * 1993-01-08 1994-07-21 Ctrc Research Foundation Color imaging system for use in molecular biology
FR2703693B1 (fr) 1993-04-06 1995-07-13 Pasteur Institut Procédé rapide de détermination d'une séquence d'ADN et application au séquençage et au diagnostic.
WO1995007363A1 (en) * 1993-09-10 1995-03-16 Genevue, Inc. Optical detection of position of oligonucleotides on large dna molecules
US5610287A (en) 1993-12-06 1997-03-11 Molecular Tool, Inc. Method for immobilizing nucleic acid molecules
FR2716263B1 (fr) 1994-02-11 1997-01-17 Pasteur Institut Procédé d'alignement de macromolécules par passage d'un ménisque et applications dans un procédé de mise en évidence, séparation et/ou dosage d'une macromolécule dans un échantillon.
US5863895A (en) * 1994-09-08 1999-01-26 Iowa State University Research Foundationv Inhibitor of chromosomal DNA replication in xenopus: the turhuter protein
US5624711A (en) 1995-04-27 1997-04-29 Affymax Technologies, N.V. Derivatization of solid supports and methods for oligomer synthesis
DE69637317T2 (de) 1995-08-09 2008-10-16 Simon, Adam J. Molekulare ausrichtung von makromolekuelen mit hilfe eines fluessigkeitsmeniskus auf einer hochspezifischen oberflaeche
US5554088A (en) 1995-09-12 1996-09-10 Zlojutro; Milan Sport training bag and support
US5851769A (en) 1995-09-27 1998-12-22 The Regents Of The University Of California Quantitative DNA fiber mapping
FR2755147B1 (fr) * 1996-10-30 1999-01-15 Pasteur Institut Procede de diagnostic de maladies genetiques par peignage moleculaire et coffret de diagnostic
US5816253A (en) * 1997-10-17 1998-10-06 Shirley G. Sosebee Perineal surgical apron

Also Published As

Publication number Publication date
AU6590400A (en) 2000-12-18
US20050142593A1 (en) 2005-06-30
PT1192283E (pt) 2006-10-31
DE60028768D1 (de) 2006-07-27
US6248537B1 (en) 2001-06-19
US20110159490A1 (en) 2011-06-30
IL146796A0 (en) 2002-07-25
DK1192283T3 (da) 2006-09-11
EP1192283B1 (en) 2006-06-14
EP1192283A2 (en) 2002-04-03
DE60028768T2 (de) 2007-05-24
WO2000073503A2 (en) 2000-12-07
ES2265962T3 (es) 2007-03-01
WO2000073503A3 (en) 2002-02-07
CA2375534C (en) 2009-09-01
WO2000073503A9 (en) 2002-03-07
ATE330035T1 (de) 2006-07-15
CA2375534A1 (en) 2000-12-07

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