CN111471606A - 一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用 - Google Patents

一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用 Download PDF

Info

Publication number
CN111471606A
CN111471606A CN202010187632.9A CN202010187632A CN111471606A CN 111471606 A CN111471606 A CN 111471606A CN 202010187632 A CN202010187632 A CN 202010187632A CN 111471606 A CN111471606 A CN 111471606A
Authority
CN
China
Prior art keywords
leu
lys
ile
glu
ser
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CN202010187632.9A
Other languages
English (en)
Other versions
CN111471606B (zh
Inventor
刘巍峰
孟祥锋
徐明远
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Shandong University
Original Assignee
Shandong University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Shandong University filed Critical Shandong University
Priority to CN202010187632.9A priority Critical patent/CN111471606B/zh
Publication of CN111471606A publication Critical patent/CN111471606A/zh
Application granted granted Critical
Publication of CN111471606B publication Critical patent/CN111471606B/zh
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/12Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • C12N9/1205Phosphotransferases with an alcohol group as acceptor (2.7.1), e.g. protein kinases
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004Oxidoreductases (1.)
    • C12N9/0006Oxidoreductases (1.) acting on CH-OH groups as donors (1.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1048Glycosyltransferases (2.4)
    • C12N9/1051Hexosyltransferases (2.4.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/12Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • C12N9/1241Nucleotidyltransferases (2.7.7)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/88Lyases (4.)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/90Isomerases (5.)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00Preparation of compounds containing saccharide radicals
    • C12P19/12Disaccharides
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y101/00Oxidoreductases acting on the CH-OH group of donors (1.1)
    • C12Y101/01Oxidoreductases acting on the CH-OH group of donors (1.1) with NAD+ or NADP+ as acceptor (1.1.1)
    • C12Y101/01271GDP-L-fucose synthase (1.1.1.271)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y204/00Glycosyltransferases (2.4)
    • C12Y204/01Hexosyltransferases (2.4.1)
    • C12Y204/01069Galactoside 2-alpha-L-fucosyltransferase (2.4.1.69)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y207/00Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/01Phosphotransferases with an alcohol group as acceptor (2.7.1)
    • C12Y207/01086NADH kinase (2.7.1.86)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y207/00Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/07Nucleotidyltransferases (2.7.7)
    • C12Y207/07013Mannose-1-phosphate guanylyltransferase (2.7.7.13)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y402/00Carbon-oxygen lyases (4.2)
    • C12Y402/01Hydro-lyases (4.2.1)
    • C12Y402/01047GDP-mannose 4,6-dehydratase (4.2.1.47), i.e. GMD
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y503/00Intramolecular oxidoreductases (5.3)
    • C12Y503/01Intramolecular oxidoreductases (5.3) interconverting aldoses and ketoses (5.3.1)
    • C12Y503/01008Mannose-6-phosphate isomerase (5.3.1.8)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y504/00Intramolecular transferases (5.4)
    • C12Y504/02Phosphotransferases (phosphomutases) (5.4.2)
    • C12Y504/02008Phosphomannomutase (5.4.2.8)

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biomedical Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)

Abstract

本发明公开了一株优化的高产2’‑岩藻糖基乳糖的酿酒酵母工程菌株,通过代谢工程改造,使得酿酒酵母可以吸收乳糖并在胞内以GDP‑甘露糖为前体合成GDP‑岩藻糖,并通过异源表达来源于蜡样芽孢杆菌中的α‑1,2‑岩藻糖基转移酶,所得到的重组菌株可以高产2’‑岩藻糖基乳糖,进而通过后续过表达GDP‑甘露糖合成相关酶将2’‑岩藻糖基乳糖产量提升至约3.8g/L,这为酿酒酵母工业化生产2’‑岩藻糖基乳糖提供了重要的参考。

Description

一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用
技术领域
本发明属于基因工程领域,尤其涉及一株高产岩藻糖基乳糖,尤其是高产2’-岩藻糖基乳糖的重组酿酒酵母及其应用。
背景技术
2’-岩藻糖基乳糖(2-FL)作为母乳寡糖中的重要组成部分,可以促进人体肠道内有益微生物如双歧杆菌等的生长,降低肠道内病原体感染的风险,还可以调控免疫应答。目前2-FL已在婴幼儿配方奶粉中作为添加剂使用。2-FL的大量合成具有良好的经济效益。化学合成2-FL过程中需添加有毒试剂,难以应用于食品工业。
在生物体内合成2-FL是行之有效的方法。2-FL的生物合成过程已较为清楚:一分子供体GDP-岩藻糖在α-1,2-岩藻糖基转移酶的作用下与受体乳糖结合,产生一分子2-FL。现有技术中有研究构建了高产2-FL的大肠杆菌重组菌株。但是大肠杆菌可能产生内毒素,影响产品的分离纯化难度及产品安全性;另外大肠杆菌发酵时易受到噬菌体的污染,这使大肠杆菌工业化生产2-FL受到了制约。
酿酒酵母是被普遍认为安全的微生物,已有研究利用酿酒酵母合成2-FL;但是,现有报道中酿酒酵母菌株合成的2-FL产量仅0.5g/L,难以满足工业化生产的需要。制约酿酒酵母中2-FL产量的重要因素之一为α-1,2-岩藻糖基转移酶的酶活性不足。寻找具有高活力的α-1,2-岩藻糖基转移酶可能会提高酿酒酵母中2-FL的产量。
发明内容
本发明通过代谢工程改造,使得酿酒酵母可以吸收乳糖并在胞内以GDP-甘露糖为前体合成GDP-岩藻糖,并通过异源表达来源于蜡样芽孢杆菌中的α-1,2-岩藻糖基转移酶,得到了高产2-FL的酿酒酵母工程菌株。
一方面,本发明提供了一株高产2’-岩藻糖基乳糖的酿酒酵母工程菌株,所述酿酒酵母工程菌株中含有重组的乳糖透性酶(Lactosepermease)、重组的GDP-甘露糖脱水酶(GDP-mannose-4,6-dehydratase)、重组的GDP-岩藻糖合酶(GDP-L-fucose synthase)以及重组的α-1,2-岩藻糖基转移酶(α-1,2fucosyltransferase)。
本发明中,术语“重组”指通过转化将目的基因转移到酿酒酵母中;所述含有重组的目的基因的酿酒酵母工程菌株与其来源的野生型酿酒酵母相比,其已经以遗传方式修饰,从而展示出改变的或不同的基因型和/或表型。可以通过将目的蛋白通过载体在宿主菌中进行表达(包括过表达的方式)来实现,还可以通过将目的蛋白的编码基因重组到宿主菌的基因组上来实现。
含有重组的目的基因的酿酒酵母工程菌株含有至少一个被引入的基因序列,此类基因序列包括但不限于天然存在或不存在酿酒酵母中的基因以及希望引入到酿酒酵母细胞中的其他基因或DNA序列,无论野生型的酿酒酵母中是否已经存在相同或类似的基因或DNA序列;在一些实施方式中,引入的基因序列将通过例如同源重组或定点诱变来修饰或甚至替代内源基因或DNA序列;在其他的实施方式中,引入到酿酒酵母工程菌株中的重组基因可以是与存在酿酒酵母中的DNA序列相同的并且被引入以提供DNA的一个或多个另外的拷贝,从而DNA的基因产物过表达或修饰的表达。
在优选的实施方式中,所述α-1,2-岩藻糖基转移酶来源于蜡样芽孢杆菌(Bacillus cereus),更优选的,所述α-1,2-岩藻糖基转移酶的氨基酸序列如SEQ ID No.11所示。
更优选的,所述酿酒酵母工程菌株包含重组的α-1,2-岩藻糖基转移酶的编码基因;优选的,所述编码基因的序列如SEQ ID No.12所示。
优选的,所述乳糖透性酶来源于乳酸克鲁维斯酵母,更优选的,所述乳糖透性酶的氨基酸序列如SEQ ID No.1所示。
优选的,所述GDP-甘露糖脱水酶和GDP-岩藻糖合酶来源于大肠杆菌,优选,来源于大肠杆菌K12,更优选的,所述GDP-甘露糖脱水酶的氨基酸序列如SEQ ID No.3所示,所述GDP-岩藻糖合酶的氨基酸序列如SEQ ID No.5所示。
进一步的,所述酿酒酵母工程菌株还包括重组的甘露糖磷酸异构酶(Phosphomannomutase)、重组的GDP-甘露糖焦磷酸酶(GDP-mannose pyrophosphorylase)。
优选的,所述甘露糖磷酸异构酶和GDP-甘露糖焦磷酸酶来源于酿酒酵母,所述甘露糖磷酸异构酶的氨基酸序列如SEQ ID No.19所示;所述GDP-甘露糖焦磷酸酶的氨基酸序列如SEQ ID No.21所示。
进一步的,所述酿酒酵母工程菌株还包括重组的甘露糖-6-磷酸异构酶(Mannose-6-phosphate isomerase);优选的,所述甘露糖-6-磷酸异构酶来源于酿酒酵母,其氨基酸序列如SEQ ID No.23所示。
进一步的,所述酿酒酵母工程菌株还包括无线粒体信号肽NADH激酶(NADHkinase);优选的,所述无线粒体信号肽NADH激酶来源于酿酒酵母,其氨基酸序列如SEQ ID No.25所示。
在优选的实施方式中,所述酿酒酵母工程菌株的出发菌株为酿酒酵母W303-1a。
另一方面,本发明还提供了所述的酿酒酵母工程菌株的制备方法,所述方法包括将所述目的基因重组到酿酒酵母中的步骤。
优选的,将所述目的基因整合到酿酒酵母的基因组中。
进一步的,所述目的基因的整合位点包括TRP1、URA3、LEU2或HIS3。
另一方面,本发明还提供了所述酿酒酵母工程菌株在生产2’-岩藻糖基乳糖中的应用。
本发明以酿酒酵母W303-1a为出发菌株。从克鲁维斯酵母总DNA中克隆出乳糖透性酶Lac12,构建表达盒Pgal1-lac12-Tcyc1,并通过无缝融合的方法将表达盒与pRS304连接。所得到的重组载体以限制性内切酶Bsu36I线性化后,通过醋酸锂转化法转入酿酒酵母W303-1a中,并通过色氨酸缺陷的YNB固体平板筛选得到阳性克隆。进一步PCR验证后,所得到的正确转化子命名为FL01。FL01可以吸收胞外添加的乳糖。从大肠杆菌K12总DNA中克隆出GDP-甘露糖脱水酶(Gmd)以及GDP-岩藻糖合成酶(WcaG),以来源于pUMRI-A的双向启动子gal1,10构建双向表达盒Pgal1-gmd-Tcyc1&Pgal10-wcaG-Tadh1。将以上表达盒通过无缝融合的方法与pRS306连接,所得到的重组载体以BstBI限制性内切酶线性化,随后通过醋酸锂转化法转入FL01中,验证正确的重组菌株命名为FL03,该菌株可以吸收胞外的乳糖,同时可以以胞内的GDP-甘露糖为底物,合成GDP-岩藻糖。
以包括Helicobacterpylori、Acetobacter sp.、Bacillus cereus、Bacteroidesunifomis、Bacteroides eggerthii、Neocallimastixcaliforniae等菌株来源的α-1,2-岩藻糖基转移酶为基础,以PCR融合的方法构建表达盒,将表达盒连接在载体pRS305上,并通过醋酸锂转化法分别转入FL03中,其中,表达来源于Bacillus cereus的α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株FL06可以产生约2.9g/L的2-FL。
随后针对酿酒酵母中合成2-FL的前体GDP-甘露糖的合成途径进行改造,以半乳糖诱导型启动子过表达Pmi40、Sec53和Psa1三个负责将果糖-6-磷酸转化为GDP-甘露糖的酶,将酿酒酵母重组菌株中2-FL产量提高至约3.7g/L。进一步通过过表达无线粒体信号肽的NADH激酶,将2-FL产量提高至3.8g/L。
现有技术中也有报道在酿酒酵母中合成2-FL,但是,所得到的酿酒酵母重组菌株中的2-FL产量仅为约0.5g/L。而本申请中利用来源于蜡样芽孢杆菌的α-1,2-岩藻糖基转移酶构建的酿酒酵母重组菌株,以半乳糖诱导相关基因的表达,发酵96h后2-FL产量可以达到2.9g/L,进而通过后续过表达GDP-甘露糖合成相关酶将2-FL产量提升至约3.8g/L,这为酿酒酵母工业化生产2-FL提供了重要的参考。
附图说明
图1.表达Lac12的酿酒酵母重组菌株FL01可以将乳糖吸收至胞内;A,葡萄糖标准品;B,半乳糖标准品;C,乳糖标准品;D、E,表达Lac12的酿酒酵母重组菌株S-L胞内裂解液。
图2.异源表达Gmd和WcaG的酿酒酵母重组菌株FL03可以产生GDP-岩藻糖;A,GDP-岩藻糖标准品;B,表达Lac12的酿酒酵母重组菌株FL01;C,表达乳糖转运体Lac12和GDP-岩藻糖合成相关酶WcaG和Gmd的酿酒酵母重组菌株FL03。
图3.重组菌株FL04菌株可以产生2-FL;a,酿酒酵母重组菌株FL03;b,酿酒酵母重组菌株FL04。
图4.表达不同来源α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株中2-FL产量;FL04,表达来源于Helicobacterpylori中α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株;FL05,表达来源于Acetobacter sp.中α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株;FL06,表达来源于Bacillus cereus中α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株;FL07,表达来源于Bacteroides eggerthii中α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株;FL08,表达来源于Bacteroides unifomis中α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株;FL09,表达来源于Neocallimastixcaliforniae中α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株。以上菌株的出发菌株均为FL03。
图5.过表达甘露糖合成途径相关酶可以提高酿酒酵母FL06中2-FL的产量;FL06,表达来源于Bacillus cereus中α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株;FL10,在菌株FL06基础上表达甘露糖合成途径相关酶Psa1和Sec53的酿酒酵母重组菌株;FL11,在菌株FL06基础上表达甘露糖合成途径相关酶Psa1、Sec53和Pmi40的酿酒酵母重组菌株。
图6.菌株FL18中2-FL产量及产生能力进一步提高;A,FL18中2-FL产量提高;B,FL18中2-FL产生效率提高。
实施方式
下面结合实施例对本发明做进一步的说明,以下所述,仅是对本发明的较佳实施例而已,并非对本发明做其他形式的限制,任何熟悉本专业的技术人员可能利用上述揭示的技术内容加以变更为同等变化的等效实施例。凡是未脱离本发明方案内容,依据本发明的技术实质对以下实施例所做的任何简单修改或等同变化,均落在本发明的保护范围内。
实施例一、可吸收乳糖的重组酿酒酵母基因工程菌株的构建
本实施例中的重组工程菌株的构建,以酿酒酵母W303-1a为出发菌株。
利用Omega试剂盒提取乳酸克鲁维斯酵母(Kluyveromyceslactis)的总DNA,使用引物Lac12-F和Lac12-R从其中扩增出乳糖透性酶(Lactosepermease)的序列,命名为Lac12,其氨基酸序列如SEQ ID No.1所示,核酸序列如SEQ ID No.2所示。
以酿酒酵母(Saccharomyces cerevisiae)W303-1a总DNA为模板,以BamHI-GAL1-F和GAL1-LAC12-R为引物扩增出gal1启动子,以lac12-CYC1-F和CYC1-XhoI-R扩增出cyc1终止子,通过SOE-PCR构建Pgal1-lac12-Tcyc1表达盒,并通过无缝连接的方法连接在以BamHI和XhoI双酶切后的pRS304载体上,得到重组载体pRS304-Pgal1-lac12-Tcyc1。重组载体pRS304-Pgal1-lac12-Tcyc1以Bsu36I酶切,通过切胶纯化得到线性化片段。
以醋酸锂转化法,将线性化的pRS304-Pgal1-lac12-Tcyc1转入酿酒酵母W303-1a中,整合位点为TRP1。涂布于色氨酸缺陷的YNB固体平板上。转化子长出后挑取于色氨酸缺陷的YNB液体培养基中,提取总DNA进行PCR验证,正确的为阳性克隆子,命名为FL01。
上述引物序列如下表所示:
Figure BDA0002414750450000061
Figure BDA0002414750450000071
FL01菌株吸收乳糖能力验证:将FL01于添加2%半乳糖和0.2%乳糖的YP培养基中培养24h后,离心去上清,菌体冲洗两遍以后破碎,所得到的细胞裂解液进行TLC分析,TLC条件:薄层硅胶板购自Thermo公司,展开剂为水:冰醋酸:异丁醇=1:1:2,10h后,60℃下将硅胶板吹干,随后将硅胶板置于染色液(90%甲醇,10%浓硫酸,0.2%苔黑素)中浸润染色,260℃下吹干,显色。可以检测到胞内存在乳糖,如图1所示。
实施例二、产GDP-岩藻糖的重组酿酒酵母基因工程菌株的构建
从大肠杆菌(Escherichia coli)K12中,以引物GMD-F和GMD-R扩增出GDP-甘露糖脱水酶(GDP-mannose-4,6-dehydratase)的序列,命名为Gmd,其氨基酸序列如SEQ ID No.3所示,其核苷酸序列如SEQ ID No.4所示。以引物WcaG-F和WcaG-R扩增出GDP-岩藻糖合酶(GDP-L-fucose synthase)的序列,命名为WcaG,其氨基酸序列如SEQ ID No.5所示,其核苷酸序列如SEQ ID No.6所示。
以pUMRI-A质粒(Ye,L.,X.Lv,and H.Yu,Assembly of biosynthetic pathwaysin Saccharomyces cerevisiae using a marker recyclable integrative plasmidtoolbox.Frontiers of Chemical Engineering in China,2017.11(1):p.126-132.)为模板,wcag-10-F和10-gmd-R为引物扩增出双向启动子gal1,10。以酿酒酵母W303-1a总DNA为模板,以SacI-ADH1-F和ADH1-wcaG-R引物扩增出adh1终止子序列,以gmd-CYC1-F和CYC1-KpnI-R引物扩增出cyc1终止子序列。通过SOE-PCR的方法,将以上片段依次连接,得到双向基因表达盒Pgal1-gmd-Tcyc1&Pgal10-wcaG-Tadh1。并通过无缝连接的方法连在SacI和KpnI酶切后的载体pRS306上,得到重组载体pRS306-Pgal1-gmd-Tcyc1&Pgal10-wcaG-Tadh1。重组载体pRS306-Pgal1-gmd-Tcyc1&Pgal10-wcaG-Tadh1以NcoI酶线性化,切胶回收。
将线性化后的pRS306-Pgal1-gmd-Tcyc1&Pgal10-wcaG-Tadh1通过醋酸锂转化法转入实施例1得到的菌株FL01中,整合位点为URA3,涂布于色氨酸、尿嘧啶缺陷的YNB固体平板上。转化子长出后挑取于色氨酸、尿嘧啶缺陷的YNB液体培养基中,提取总DNA以引物SacI-ADH1-F和CYC1-KpnI-R进行PCR验证,正确的为阳性克隆子,命名为FL03。
所用引物如下表所示:
Figure BDA0002414750450000081
FL03菌株中GDP-岩藻糖的检测:将FL03于添加2%葡萄糖和2%半乳糖的YP培养基中培养48h后,离心去上清,菌体冲洗两遍以后破碎,所得到的细胞裂解液进行HPLC分析。所用HPLC仪器来自岛津公司,带有UV检测器,使用C18分析柱(SyncronisaQ 250*4.6*5μm,Thermo Fisher Scientific)进行分析,柱温30℃,流动相为20mM三乙胺,添加2%(v/v)乙腈,流速为0.6mL/min,样品进样量15μL,检测波长为254nm;可以检测到胞内存在GDP-岩藻糖,检测结果如图2所示,表明FL03菌株可以产生GDP-岩藻糖。
实施例三、产2’-岩藻糖基乳糖的重组酿酒酵母基因工程菌株的构建
以人类及幽门螺杆菌来源的α-1,2-岩藻糖基转移酶为模板,通过blast分析从Helicobacterpylori、Acetobacter sp.、Bacillus cereus、Bacteroides unifomis、Bacteroides eggerthii、Neocallimastixcaliforniae菌株中发现新的α-1,2-岩藻糖基转移酶,分别命名为Futhp(氨基酸序列如SEQ ID No.7所示,核苷酸序列如SEQ ID No.8所示),Futas(氨基酸序列如SEQ ID No.9所示,核苷酸序列如SEQ ID No.10所示),Futbc(氨基酸序列如SEQ ID No.11所示,核苷酸序列如SEQ ID No.12所示),Futbu(氨基酸序列如SEQ ID No.15所示,核苷酸序列如SEQ ID No.16所示),Futbe(氨基酸序列如SEQ ID No.13所示,核苷酸序列如SEQ ID No.14所示),Futnc(氨基酸序列如SEQ ID No.17所示,核苷酸序列如SEQ ID No.18所示)。
将上述α-1,2-岩藻糖基转移酶编码序列以如下表所示引物扩增。以酿酒酵母W303-1a总DNA为模板分别扩增得到对应以上α-1,2-岩藻糖基转移酶的启动子gal1和终止子cyc1。通过SOE-PCR的方法融合对应片段,得到不同α-1,2-岩藻糖基转移酶的表达盒Pgal1-fut-Tcyc1。将表达盒分别与XbaI和HindIII酶切后的pRS305无缝连接,得到重组载体。所用引物如下表所示:
Figure BDA0002414750450000091
Figure BDA0002414750450000101
以上得到的重组载体均以BspTI酶切后,切胶回收。
将线性化后的上述构建的重组pRS305-Pgal1-fut-Tcyc1载体通过醋酸锂转化法转入实施例2得到的菌株FL03中,整合位点为LEU2,涂布于色氨酸、尿嘧啶、亮氨酸缺陷的YNB固体平板上。转化子长出后挑取于色氨酸、尿嘧啶、亮氨酸缺陷的YNB液体培养基中,提取总DNA进行PCR验证,正确的为阳性克隆子,将带有来源于Helicobacterpylori、Acetobactersp.、Bacillus cereus、Bacteroides unifomis、Bacteroides eggerthii、Neocallimastixcaliforniae菌株的α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株分别命名为FL04,FL05,FL06,FL07,FL08,FL09。
上述重组菌株中2-FL的检测方法:将菌株于添加2%葡萄糖、2%半乳糖和0.2%乳糖的YP培养基中培养96h后,离心取上清为胞外产物,菌体冲洗两遍以后破碎,所得到的细胞裂解液为胞内产物。将胞外及胞内产物进行HPLC分析。所用HPLC仪器来自岛津公司,带有RI检测器,使用Rezex ROA-Organic Acid H+(8%)column(Phenomenex,Torrance,CA,USA)分析柱进行分析,柱温50℃,流动相为0.005N的H2SO4,流速为0.6mL/min,样品进样量15μL,检测结果如图3所示,以重组菌株FL04为例,可在保留时间7.9min处检测到2-FL。进一步对表达不同来源α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株所产生的2-FL进行定量分析,结果如图4所示,其中,表达来源于Bacillus cereus(蜡样芽孢杆菌)的α-1,2-岩藻糖基转移酶的酿酒酵母重组菌株FL06中2-FL产量可达到约2.9g/L。
实施例四、酿酒酵母重组菌株FL06中2-FL产量的优化
以酿酒酵母W303-1a基因组为模板,以引物SEC-F和SEC-R扩增出甘露糖磷酸异构酶(Phosphomannomutase)的序列,命名为Sec53,其氨基酸序列如SEQ ID No.19所示,其核苷酸序列如SEQ ID No.20所示。以引物PSA1-F和PSA1-R扩增出GDP-甘露糖焦磷酸酶(GDP-mannose pyrophosphorylase)的序列,命名为Psa1,其氨基酸序列如SEQ ID No.21所示,其核苷酸序列如SEQ ID No.22所示。
以pUMRI-A质粒为模板,10-s-F和10-p-R为引物扩增出双向启动子gal1,10。以酿酒酵母W303-1a总DNA为模板,以XbaI-ADH1-F和ADH1-sec-R引物扩增出adh1终止子序列,以CYC1-psa1-F和EcoRI-cyc1-R引物扩增出cyc1终止子序列。
通过SOE-PCR的方法,将以上片段依次连接,得到双向基因表达盒Pgal1-sec53-Tcyc1&Pgal10-psa1-Tadh1。并通过无缝连接的方法连在XbaI和EcoRI酶切后的载体pRS303上,得到重组载体pRS303-Pgal1-sec53-Tcyc1&Pgal10-psa1-Tadh1;所用引物序列如下:
Figure BDA0002414750450000111
Figure BDA0002414750450000121
重组载体pRS303-Pgal1-sec53-Tcyc1&Pgal10-psa1-Tadh1以PciI酶线性化,切胶回收。将线性化后的pRS303-Pgal1-sec53-Tcyc1&Pgal10-psa1-Tadh1通过醋酸锂转化法转入实施例3制备的重组菌株FL06中,整合位点为HIS3,涂布于色氨酸、尿嘧啶、亮氨酸、组氨酸缺陷的YNB固体平板上。转化子长出后挑取于色氨酸、尿嘧啶、亮氨酸、组氨酸缺陷的YNB液体培养基中,提取总DNA以引物XbaI-ADH1-F和EcoRI-cyc1-R进行PCR验证,正确的为阳性克隆子,命名为FL10。
将菌株于添加2%葡萄糖、2%半乳糖和0.4%乳糖的YP培养基中培养96h后,离心取上清为胞外产物,菌体冲洗两遍以后破碎,所得到的细胞裂解液为胞内产物。将胞外及胞内产物进行HPLC分析。并利用2-FL标准品进行定量分析,结果如图5所示,过表达甘露糖磷酸异构酶和GDP-甘露糖合酶,可以将2-FL的产量进一步提升至约3.5g/L。
以酿酒酵母W303-1a基因组为模板,以引物BamHI-PMI40-F和NheI-PMI40-R扩增出甘露糖-6-磷酸异构酶(Mannose-6-phosphate isomerase)的序列,命名为Pmi40,其氨基酸序列如SEQ ID No.23所示,其核苷酸序列如SEQ ID No.24所示。
通过无缝连接的方法将Pmi40连在BamHI和NheI酶切后的载体pUMRI-A上,得到重组载体pUMRI-A-Pgal10-pmi40-Tadh1。所用引物序列如下:
BamHI-PMI40-F AAGGAGAAAAAACCCCGGATCCATGTCCAACAAGCTGTTCAG
NheI-PMI40-R GTTAGAGCGGATCTTAGCTAGCCTAATTTGGTTCCACAAAGG
重组载体pUMRI-A-Pgal10-pmi40-Tadh1以BsiWI酶线性化,切胶回收。将线性化后的pUMRI-A-Pgal10-pmi40-Tadh1通过醋酸锂转化法转入上述得到的重组菌株FL10中,整合位点为URA3,涂布于添加200μg/mLG418的YPD固体平板上。转化子长出后挑取于添加200μg/mLG418的YPD液体培养基中,提取总DNA以引物XbaI-ADH1-F和EcoRI-cyc1-R进行PCR验证,正确的为阳性克隆子,命名为FL11。
将菌株FL11于添加2%葡萄糖、2%半乳糖和0.4%乳糖的YP培养基中培养96h后,离心取上清为胞外产物,菌体冲洗两遍以后破碎,所得到的细胞裂解液为胞内产物。将胞外及胞内产物进行HPLC分析。并利用2-FL标准品进行定量分析,结果如图5所示,在过表达甘露糖磷酸异构酶和GDP-甘露糖合酶的基础上进一步表达果糖-甘露糖-6-磷酸异构酶,可以将2-FL的产量提升至约3.7g/L。
以酿酒酵母W303-1a基因组为模板,以引物EcoRI-POS5-F和SacI-POS5-R扩增出无线粒体信号肽的NADH激酶(NADHkinase)的序列,命名为sPos5,其氨基酸序列如SEQ IDNo.25所示,其核苷酸序列如SEQ ID No.26所示。
通过无缝连接的方法将sPos5编码序列连在EcoRI和SacI酶切后的载体pUMRI-A上,得到重组载体pUMRI-A-Pgal1-spos5-Tcyc1。测序正确后,利用BamHI和NheI酶切载体pUMRI-A-Pgal1-spos5-Tcyc1,通过无缝连接的方法将Pmi40的编码序列连接在pUMRI-A-Pgal1-spos5-Tcyc1上,得到重组载体pUMRI-A-Pgal1-spos5-Tcyc1&Pgal10-pmi40-Tadh1。所用引物序列如下:
EcoRI-POS5-F GAATTTTTGAAAATTCGAATTCATGAGTACGTTGGATTCACATTC
SacI-POS5-R AGAATTGTTAATTAAGAGCTCTTAATCATTATCAGTCTGTCTCTTGGTC
重组载体pUMRI-A-Pgal1-spos5-Tcyc1&Pgal10-pmi40-Tadh1以BsiWI酶线性化,切胶回收。将线性化后的pUMRI-A-Pgal1-spos5-Tcyc1&Pgal10-pmi40-Tadh1通过醋酸锂转化法转入上述得到的重组菌株FL10中,整合位点为URA3,涂布于添加200μg/mLG418的YPD固体平板上。转化子长出后挑取于添加200μg/mLG418的YPD液体培养基中,提取总DNA以引物SacI-POS5-R和NheI-PMI40-R进行PCR验证,正确的为阳性克隆子,命名为FL18。
将菌株FL18于添加2%葡萄糖、2%半乳糖和0.4%乳糖的YP培养基中培养96h后,离心取上清为胞外产物,菌体冲洗两遍以后破碎,所得到的细胞裂解液为胞内产物。将胞外及胞内产物进行HPLC分析。结果如图6所示,高表达无线粒体信号肽的NADH激酶能够少量提高酿酒酵母中2-FL的产量,约为3.8g/L。比较FL18与FL11等数目细胞产生2-FL的能力,FL18可以产生约0.91g/L/OD的2-FL,而FL11仅能产生0.80g/L/OD的2-FL。上述实施例中所涉及菌株如下表所示:
Figure BDA0002414750450000141
上文中已经用一般性说明及具体实施方案对本发明作了详尽的描述,但在本发明基础上,可以对之作一些修改或改进,这对本领域技术人员而言是显而易见的。因此,在不偏离本发明精神的基础上所做的这些修改或改进,均属于本发明要求保护的范围。
SEQUENCE LISTING
<110> 山东大学
<120> 一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用
<130> CP120060161C
<160> 26
<170> PatentIn version 3.5
<210> 1
<211> 587
<212> PRT
<213> Kluyveromyces lactis
<400> 1
Met Ala Asp His Ser Ser Ser Ser Ser Ser Leu Gln Lys Lys Pro Ile
1 5 10 15
Asn Thr Ile Glu His Lys Asp Thr Leu Gly Asn Asp Arg Asp His Lys
20 25 30
Glu Ala Leu Asn Ser Asp Asn Asp Asn Thr Ser Gly Leu Lys Ile Asn
35 40 45
Gly Val Pro Ile Glu Asp Ala Arg Glu Glu Val Leu Leu Pro Gly Tyr
50 55 60
Leu Ser Lys Gln Tyr Tyr Lys Leu Tyr Gly Leu Cys Phe Ile Thr Tyr
65 70 75 80
Leu Cys Ala Thr Met Gln Gly Tyr Asp Gly Ala Leu Met Gly Ser Ile
85 90 95
Tyr Thr Glu Asp Ala Tyr Leu Lys Tyr Tyr His Leu Asp Ile Asn Ser
100 105 110
Ser Ser Gly Thr Gly Leu Val Phe Ser Ile Phe Asn Val Gly Gln Ile
115 120 125
Cys Gly Ala Phe Phe Val Pro Leu Met Asp Trp Lys Gly Arg Lys Pro
130 135 140
Ala Ile Leu Ile Gly Cys Leu Gly Val Val Ile Gly Ala Ile Ile Ser
145 150 155 160
Ser Leu Thr Thr Thr Lys Ser Ala Leu Ile Gly Gly Arg Trp Phe Val
165 170 175
Ala Phe Phe Ala Thr Ile Ala Asn Ala Ala Ala Pro Thr Tyr Cys Ala
180 185 190
Glu Val Ala Pro Ala His Leu Arg Gly Lys Val Ala Gly Leu Tyr Asn
195 200 205
Thr Leu Trp Ser Val Gly Ser Ile Val Ala Ala Phe Ser Thr Tyr Gly
210 215 220
Thr Asn Lys Asn Phe Pro Asn Ser Ser Lys Ala Phe Lys Ile Pro Leu
225 230 235 240
Tyr Leu Gln Met Met Phe Pro Gly Leu Val Cys Ile Phe Gly Trp Leu
245 250 255
Ile Pro Glu Ser Pro Arg Trp Leu Val Gly Val Gly Arg Glu Glu Glu
260 265 270
Ala Arg Glu Phe Ile Ile Lys Tyr His Leu Asn Gly Asp Arg Thr His
275 280 285
Pro Leu Leu Asp Met Glu Met Ala Glu Ile Ile Glu Ser Phe His Gly
290 295 300
Thr Asp Leu Ser Asn Pro Leu Glu Met Leu Asp Val Arg Ser Leu Phe
305 310 315 320
Arg Thr Arg Ser Asp Arg Tyr Arg Ala Met Leu Val Ile Leu Met Ala
325 330 335
Trp Phe Gly Gln Phe Ser Gly Asn Asn Val Cys Ser Tyr Tyr Leu Pro
340 345 350
Thr Met Leu Arg Asn Val Gly Met Lys Ser Val Ser Leu Asn Val Leu
355 360 365
Met Asn Gly Val Tyr Ser Ile Val Thr Trp Ile Ser Ser Ile Cys Gly
370 375 380
Ala Phe Phe Ile Asp Lys Ile Gly Arg Arg Glu Gly Phe Leu Gly Ser
385 390 395 400
Ile Ser Gly Ala Ala Leu Ala Leu Thr Gly Leu Ser Ile Cys Thr Ala
405 410 415
Arg Tyr Glu Lys Thr Lys Lys Lys Ser Ala Ser Asn Gly Ala Leu Val
420 425 430
Phe Ile Tyr Leu Phe Gly Gly Ile Phe Ser Phe Ala Phe Thr Pro Met
435 440 445
Gln Ser Met Tyr Ser Thr Glu Val Ser Thr Asn Leu Thr Arg Ser Lys
450 455 460
Ala Gln Leu Leu Asn Phe Val Val Ser Gly Val Ala Gln Phe Val Asn
465 470 475 480
Gln Phe Ala Thr Pro Lys Ala Met Lys Asn Ile Lys Tyr Trp Phe Tyr
485 490 495
Val Phe Tyr Val Phe Phe Asp Ile Phe Glu Phe Ile Val Ile Tyr Phe
500 505 510
Phe Phe Val Glu Thr Lys Gly Arg Ser Leu Glu Glu Leu Glu Val Val
515 520 525
Phe Glu Ala Pro Asn Pro Arg Lys Ala Ser Val Asp Gln Ala Phe Leu
530 535 540
Ala Gln Val Arg Ala Thr Leu Val Gln Arg Asn Asp Val Arg Val Ala
545 550 555 560
Asn Ala Gln Asn Leu Lys Glu Gln Glu Pro Leu Lys Ser Asp Ala Asp
565 570 575
His Val Glu Lys Leu Ser Glu Ala Glu Ser Val
580 585
<210> 2
<211> 1764
<212> DNA
<213> Kluyveromyces lactis
<400> 2
atggcagatc attcgagcag ctcatcttcg ctgcagaaga agccaattaa tactatcgag 60
cataaagaca ctttgggcaa tgatcgggat cacaaggaag ccttgaacag tgataatgat 120
aatacttctg gattgaaaat caatggtgtc cccatcgagg acgctagaga ggaagtgctc 180
ttaccaggtt acttgtcgaa gcaatattac aaattgtacg gtttatgttt tataacatat 240
ctgtgtgcta ctatgcaagg ttatgatggg gctttaatgg gttctatcta taccgaagat 300
gcatatttga aatactacca tttggatatt aactcatcct ctggtactgg tctagtgttc 360
tctattttca acgttggtca aatttgcggt gcattctttg ttcctcttat ggattggaaa 420
ggtagaaaac ctgctatttt aattgggtgt ctgggtgttg ttattggtgc tattatttcg 480
tctttaacaa caacaaagag tgcattaatt ggtggtagat ggttcgtggc ctttttcgct 540
acaatcgcta atgcagcagc tccaacatac tgtgcagaag tggctccagc tcacttaaga 600
ggtaaggttg caggtcttta taacaccctt tggtctgtcg gttccattgt tgctgccttt 660
agcacttacg gtaccaacaa aaacttccct aactcctcca aggcttttaa gattccatta 720
tacttacaaa tgatgttccc aggtcttgtg tgtatatttg gttggttaat cccagaatct 780
ccaagatggt tggttggtgt tggccgtgag gaagaagctc gtgaattcat tatcaaatac 840
cacttaaatg gcgatagaac tcatccatta ttggatatgg agatggcaga aataatagaa 900
tctttccatg gtacagattt atcaaaccct ctagaaatgt tagatgtaag gagcttattc 960
agaacgagat cggataggta cagagcaatg ttggttatac ttatggcttg gttcggtcaa 1020
ttttccggta acaatgtgtg ttcgtactat ttgcctacca tgttgagaaa tgttggtatg 1080
aagagtgtct cattgaatgt gttaatgaat ggtgtttatt ccatcgtcac ttggatttct 1140
tcaatttgcg gtgcattctt tattgataag attggtagaa gggaaggttt ccttggttct 1200
atctcaggtg ctgcattagc attgacaggt ctatctatct gtactgctcg ttatgagaag 1260
actaagaaga agagtgcttc caatggtgca ttggtgttca tttatctctt tggtggtatc 1320
ttttcttttg ctttcactcc aatgcaatcc atgtactcaa cagaagtgtc tacaaacttg 1380
acgagatcta aggcccaact cctcaacttt gtggtttctg gtgttgccca atttgttaat 1440
caatttgcta ctccaaaggc aatgaagaat atcaaatatt ggttctatgt gttctacgtt 1500
ttcttcgata ttttcgaatt tattgttatc tacttcttct tcgttgaaac taagggtaga 1560
agcttagaag aattagaagt tgtctttgaa gctccaaacc caagaaaggc atccgttgat 1620
caagcattct tggctcaagt cagggcaact ttggtccaac gaaatgacgt tagagttgca 1680
aatgctcaaa atttgaaaga gcaagagcct ctaaagagcg atgctgatca tgtcgaaaag 1740
ctttcagagg cagaatctgt ttaa 1764
<210> 3
<211> 373
<212> PRT
<213> Escherichia coli
<400> 3
Met Ser Lys Val Ala Leu Ile Thr Gly Val Thr Gly Gln Asp Gly Ser
1 5 10 15
Tyr Leu Ala Glu Phe Leu Leu Glu Lys Gly Tyr Glu Val His Gly Ile
20 25 30
Lys Arg Arg Ala Ser Ser Phe Asn Thr Glu Arg Val Asp His Ile Tyr
35 40 45
Gln Asp Pro His Thr Cys Asn Pro Lys Phe His Leu His Tyr Gly Asp
50 55 60
Leu Ser Asp Thr Ser Asn Leu Thr Arg Ile Leu Arg Glu Val Gln Pro
65 70 75 80
Asp Glu Val Tyr Asn Leu Gly Ala Met Ser His Val Ala Val Ser Phe
85 90 95
Glu Ser Pro Glu Tyr Thr Ala Asp Val Asp Ala Met Gly Thr Leu Arg
100 105 110
Leu Leu Glu Ala Ile Arg Phe Leu Gly Leu Glu Lys Lys Thr Arg Phe
115 120 125
Tyr Gln Ala Ser Thr Ser Glu Leu Tyr Gly Leu Val Gln Glu Ile Pro
130 135 140
Gln Lys Glu Thr Thr Pro Phe Tyr Pro Arg Ser Pro Tyr Ala Val Ala
145 150 155 160
Lys Leu Tyr Ala Tyr Trp Ile Thr Val Asn Tyr Arg Glu Ser Tyr Gly
165 170 175
Met Tyr Ala Cys Asn Gly Ile Leu Phe Asn His Glu Ser Pro Arg Arg
180 185 190
Gly Glu Thr Phe Val Thr Arg Lys Ile Thr Arg Ala Ile Ala Asn Ile
195 200 205
Ala Gln Gly Leu Glu Ser Cys Leu Tyr Leu Gly Asn Met Asp Ser Leu
210 215 220
Arg Asp Trp Gly His Ala Lys Asp Tyr Val Lys Met Gln Trp Met Met
225 230 235 240
Leu Gln Gln Glu Gln Pro Glu Asp Phe Val Ile Ala Thr Gly Val Gln
245 250 255
Tyr Ser Val Arg Gln Phe Val Glu Met Ala Ala Ala Gln Leu Gly Ile
260 265 270
Lys Leu Arg Phe Glu Gly Thr Gly Val Glu Glu Lys Gly Ile Val Val
275 280 285
Ser Val Thr Gly His Asp Ala Pro Gly Val Lys Pro Gly Asp Val Ile
290 295 300
Ile Ala Val Asp Pro Arg Tyr Phe Arg Pro Ala Glu Val Glu Thr Leu
305 310 315 320
Leu Gly Asp Pro Thr Lys Ala His Glu Lys Leu Gly Trp Lys Pro Glu
325 330 335
Ile Thr Leu Arg Glu Met Val Ser Glu Met Val Ala Asn Asp Leu Glu
340 345 350
Ala Ala Lys Lys His Ser Leu Leu Lys Ser His Gly Tyr Asp Val Ala
355 360 365
Ile Ala Leu Glu Ser
370
<210> 4
<211> 1122
<212> DNA
<213> Escherichia coli
<400> 4
atgtcaaaag tcgctctcat caccggtgta accggacaag acggttctta cctggcagag 60
tttctgctgg aaaaaggtta cgaggtgcat ggtattaagc gtcgcgcatc gtcattcaac 120
accgagcgcg tggatcacat ttatcaggat ccgcacacct gcaacccgaa attccatctg 180
cattatggcg acctgagtga tacctctaac ctgacgcgca ttttgcgtga agtacagccg 240
gatgaagtgt acaacctggg cgcaatgagc cacgttgcgg tctcttttga gtcaccagaa 300
tataccgctg acgtcgacgc gatgggtacg ctgcgcctgc tggaggcgat ccgcttcctc 360
ggtctggaaa agaaaactcg tttctatcag gcttccacct ctgaactgta tggtctggtg 420
caggaaattc cgcagaaaga gaccacgccg ttctacccgc gatctccgta tgcggtcgcc 480
aaactgtacg cctactggat caccgttaac taccgtgaat cctacggcat gtacgcctgt 540
aacggaattc tcttcaacca tgaatccccg cgccgcggcg aaaccttcgt tacccgcaaa 600
atcacccgcg caatcgccaa catcgcccag gggctggagt cgtgcctgta cctcggcaat 660
atggattccc tgcgtgactg gggccacgcc aaagactacg taaaaatgca gtggatgatg 720
ctgcagcagg aacagccgga agatttcgtt atcgcgaccg gcgttcagta ctccgtgcgt 780
cagttcgtgg aaatggcggc agcacagctg ggcatcaaac tgcgctttga aggcacgggc 840
gttgaagaga agggcattgt ggtttccgtc accgggcatg acgcgccggg cgttaaaccg 900
ggtgatgtga ttatcgctgt tgacccgcgt tacttccgtc cggctgaagt tgaaacgctg 960
ctcggcgacc cgaccaaagc gcacgaaaaa ctgggctgga aaccggaaat caccctcaga 1020
gagatggtgt ctgaaatggt ggctaatgac ctcgaagcgg cgaaaaaaca ctctctgctg 1080
aaatctcacg gctacgacgt ggcgatcgcg ctggagtcat aa 1122
<210> 5
<211> 321
<212> PRT
<213> Escherichia coli
<400> 5
Met Ser Lys Gln Arg Val Phe Ile Ala Gly His Arg Gly Met Val Gly
1 5 10 15
Ser Ala Ile Arg Arg Gln Leu Glu Gln Arg Gly Asp Val Glu Leu Val
20 25 30
Leu Arg Thr Arg Asp Glu Leu Asn Leu Leu Asp Ser Arg Ala Val His
35 40 45
Asp Phe Phe Ala Ser Glu Arg Ile Asp Gln Val Tyr Leu Ala Ala Ala
50 55 60
Lys Val Gly Gly Ile Val Ala Asn Asn Thr Tyr Pro Ala Asp Phe Ile
65 70 75 80
Tyr Gln Asn Met Met Ile Glu Ser Asn Ile Ile His Ala Ala His Gln
85 90 95
Asn Asp Val Asn Lys Leu Leu Phe Leu Gly Ser Ser Cys Ile Tyr Pro
100 105 110
Lys Leu Ala Lys Gln Pro Met Ala Glu Ser Glu Leu Leu Gln Gly Thr
115 120 125
Leu Glu Pro Thr Asn Glu Pro Tyr Ala Ile Ala Lys Ile Ala Gly Ile
130 135 140
Lys Leu Cys Glu Ser Tyr Asn Arg Gln Tyr Gly Arg Asp Tyr Arg Ser
145 150 155 160
Val Met Pro Thr Asn Leu Tyr Gly Pro His Asp Asn Phe His Pro Ser
165 170 175
Asn Ser His Val Ile Pro Ala Leu Leu Arg Arg Phe His Glu Ala Thr
180 185 190
Ala Gln Asn Ala Pro Asp Val Val Val Trp Gly Ser Gly Thr Pro Met
195 200 205
Arg Glu Phe Leu His Val Asp Asp Met Ala Ala Ala Ser Ile His Val
210 215 220
Met Glu Leu Ala His Glu Val Trp Leu Glu Asn Thr Gln Pro Met Leu
225 230 235 240
Ser His Ile Asn Val Gly Thr Gly Val Asp Cys Thr Ile Arg Glu Leu
245 250 255
Ala Gln Thr Ile Ala Lys Val Val Gly Tyr Lys Gly Arg Val Val Phe
260 265 270
Asp Ala Ser Lys Pro Asp Gly Thr Pro Arg Lys Leu Leu Asp Val Thr
275 280 285
Arg Leu His Gln Leu Gly Trp Tyr His Glu Ile Ser Leu Glu Ala Gly
290 295 300
Leu Ala Ser Thr Tyr Gln Trp Phe Leu Glu Asn Gln Asp Arg Phe Arg
305 310 315 320
Gly
<210> 6
<211> 966
<212> DNA
<213> Escherichia coli
<400> 6
atgagtaaac aacgagtttt tattgctggt catcgcggga tggtcggttc cgccatcagg 60
cggcagctcg aacagcgcgg tgatgtggaa ctggtattac gcacccgcga cgagctgaac 120
ctgctggaca gccgcgccgt gcatgatttc tttgccagcg aacgtattga ccaggtctat 180
ctggcggcgg cgaaagtggg cggcattgtt gccaacaaca cctatccggc ggatttcatc 240
taccagaaca tgatgattga gagcaacatc attcacgccg cgcatcagaa cgacgtgaac 300
aaactgctgt ttctcggatc gtcctgcatc tacccgaaac tggcaaaaca gccgatggca 360
gaaagcgagt tgttgcaggg cacgctggag ccgactaacg agccttatgc tattgccaaa 420
atcgccggga tcaaactgtg cgaatcatac aaccgccagt acggacgcga ttaccgctca 480
gtcatgccga ccaacctgta cgggccacac gacaacttcc acccgagtaa ttcgcatgtg 540
atcccagcat tgctgcgtcg cttccacgag gcgacggcac agaatgcgcc ggacgtggtg 600
gtatggggca gcggtacacc gatgcgcgaa tttctgcacg tcgatgatat ggcggcggcg 660
agcattcatg tcatggagct ggcgcatgaa gtctggctgg agaacaccca gccgatgttg 720
tcgcacatta acgtcggcac gggcgttgac tgcactatcc gcgagctggc gcaaaccatc 780
gccaaagtgg tgggttacaa aggccgggtg gtttttgatg ccagcaaacc ggatggcacg 840
ccgcgcaaac tgctggatgt gacgcgcctg catcagcttg gctggtatca cgaaatctca 900
ctggaagcgg ggcttgccag cacttaccag tggttccttg agaatcaaga ccgctttcgg 960
gggtaa 966
<210> 7
<211> 300
<212> PRT
<213> Helicobacter pylori
<400> 7
Met Ala Phe Lys Val Val Gln Ile Cys Gly Gly Leu Gly Asn Gln Met
1 5 10 15
Phe Gln Tyr Ala Phe Ala Lys Ser Leu Gln Lys His Ser Asn Thr Pro
20 25 30
Val Leu Leu Asp Ile Thr Ser Phe Asp Trp Ser Asp Arg Lys Met Gln
35 40 45
Leu Glu Leu Phe Pro Ile Asp Leu Pro Tyr Ala Ser Ala Lys Glu Ile
50 55 60
Ala Ile Ala Lys Met Gln His Leu Pro Lys Leu Val Arg Asp Ala Leu
65 70 75 80
Lys Cys Met Gly Phe Asp Arg Val Ser Gln Glu Ile Val Phe Glu Tyr
85 90 95
Glu Pro Lys Leu Leu Lys Pro Ser Arg Leu Thr Tyr Phe Phe Gly Tyr
100 105 110
Phe Gln Asp Pro Arg Tyr Phe Asp Ala Ile Ser Pro Leu Ile Lys Gln
115 120 125
Thr Phe Thr Leu Pro Pro Pro Pro Glu Asn Asn Lys Asn Asn Asn Lys
130 135 140
Lys Glu Glu Glu Tyr Gln Cys Lys Leu Ser Leu Ile Leu Ala Ala Lys
145 150 155 160
Asn Ser Val Phe Val His Ile Arg Arg Gly Asp Tyr Val Gly Ile Gly
165 170 175
Cys Gln Leu Gly Ile Asp Tyr Gln Lys Lys Ala Leu Glu Tyr Met Ala
180 185 190
Lys Arg Val Pro Asn Met Glu Leu Phe Val Phe Cys Glu Asp Leu Glu
195 200 205
Phe Thr Gln Asn Leu Asp Leu Gly Tyr Pro Phe Met Asp Met Thr Thr
210 215 220
Arg Asp Lys Glu Glu Glu Ala Tyr Trp Asp Met Leu Leu Met Gln Ser
225 230 235 240
Cys Gln His Gly Ile Ile Ala Asn Ser Thr Tyr Ser Trp Trp Ala Ala
245 250 255
Tyr Leu Ile Glu Asn Pro Glu Lys Ile Ile Ile Gly Pro Lys His Trp
260 265 270
Leu Phe Gly His Glu Asn Ile Leu Cys Lys Glu Trp Val Lys Ile Glu
275 280 285
Ser His Phe Glu Val Lys Ser Gln Lys Tyr Asn Ala
290 295 300
<210> 8
<211> 903
<212> DNA
<213> Helicobacter pylori
<400> 8
atggctttta aggtggtgca aatttgcgga gggcttggga atcaaatgtt tcaatacgct 60
ttcgctaaaa gtttgcaaaa acactctaat acgcctgtgc tgttagatat cacttctttt 120
gattggagcg ataggaaaat gcaattagaa cttttcccta ttgatttgcc ctatgcgagc 180
gcgaaagaaa tcgctatagc taaaatgcaa cacctcccca agctagtaag agacgcgctc 240
aaatgcatgg gatttgatag ggtgagtcaa gaaatcgttt ttgaatacga gcctaaattg 300
ctaaagccaa gccgcttgac ttattttttt ggctatttcc aagatccacg atactttgat 360
gctatatccc ctttaatcaa gcaaaccttc actctaccac caccaccaga aaataataag 420
aataataata aaaaagagga agaatatcag tgcaagcttt ctttgatttt agccgctaaa 480
aacagcgtgt ttgtgcatat aagaagaggg gattatgtgg ggattggctg tcagcttggt 540
attgactatc aaaaaaaggc gcttgagtat atggcaaagc gcgtgccaaa catggagctt 600
tttgtgtttt gcgaagactt agaattcacg caaaatcttg atcttggcta cccttttatg 660
gacatgacca ctagggataa agaagaagag gcgtattggg acatgctgct catgcaatct 720
tgtcagcatg gcattatcgc taatagcact tatagctggt gggcggccta tttgatagaa 780
aatccagaaa aaatcattat tggccccaaa cactggcttt ttgggcatga gaatatcctt 840
tgtaaggagt gggtgaaaat agaatcccat tttgaggtaa aatcccaaaa gtataacgct 900
taa 903
<210> 9
<211> 308
<212> PRT
<213> Acetobacter sp.
<400> 9
Met Ala Val Ser Pro Gln Glu Ser Lys Tyr Ser Ala His Val Ser Pro
1 5 10 15
Asp Lys Pro Leu Arg Ile Val Arg Leu Gly Gly Gly Leu Gly Asn Gln
20 25 30
Met Phe Gln Tyr Ala Phe Gly Leu Ala Ala Gly Asp Val Leu Trp Asp
35 40 45
Asn Thr Ser Phe Leu Thr Asn His Tyr Arg Ser Phe Asp Leu Gly Leu
50 55 60
Tyr Asn Ile Ser Gly Asp Phe Ala Ser Asn Glu Gln Ile Lys Lys Cys
65 70 75 80
Lys Asn Glu Ile Arg Phe Lys Asn Ile Leu Pro Arg Ser Ile Arg Lys
85 90 95
Lys Phe Asn Leu Gly Lys Phe Ile Tyr Leu Lys Thr Asn Arg Val Cys
100 105 110
Glu Arg Gln Ile Asn Arg Tyr Glu Pro Glu Leu Leu Ser Lys Asp Gly
115 120 125
Asp Val Tyr Tyr Asp Gly Val Phe Gln Thr Glu Lys Tyr Phe Lys Pro
130 135 140
Leu Arg Glu Arg Leu Leu His Asp Phe Thr Leu Thr Lys Pro Leu Asp
145 150 155 160
Ala Ala Asn Leu Asp Met Leu Ala Lys Ile Arg Ala Ala Asp Ala Val
165 170 175
Ala Val His Ile Arg Arg Gly Asp Tyr Leu Asn Pro Arg Ser Pro Phe
180 185 190
Thr Tyr Leu Asp Lys Asp Tyr Phe Leu Asn Ala Met Asp Tyr Ile Gly
195 200 205
Lys Arg Val Asp Lys Pro His Phe Phe Ile Phe Ser Ser Asp Thr Asp
210 215 220
Trp Val Arg Thr Asn Ile Gln Thr Ala Tyr Pro Gln Thr Ile Val Glu
225 230 235 240
Ile Asn Asp Glu Lys His Gly Tyr Phe Asp Leu Glu Leu Met Arg Asn
245 250 255
Cys Arg His Asn Ile Ile Ala Asn Ser Thr Phe Ser Trp Trp Gly Ala
260 265 270
Trp Leu Asn Thr Asn Pro Asp Lys Ile Val Val Ala Pro Lys Gln Trp
275 280 285
Phe Arg Pro Asp Ala Ala Glu Tyr Ser Gly Asp Ile Val Pro Asn Asp
290 295 300
Trp Ile Lys Leu
305
<210> 10
<211> 927
<212> DNA
<213> Acetobacter sp.
<400> 10
atggctgttt cacctcaaga aagcaaatat tccgcccatg tttccccgga taaaccgctg 60
cgtatcgtca ggctgggcgg agggctcggc aatcagatgt ttcaatatgc cttcggactg 120
gctgccggtg atgttttgtg ggacaatacc agctttttga ccaaccatta ccgcagtttt 180
gatttgggat tgtataacat cagcggagat tttgcctcaa atgaacaaat aaaaaaatgt 240
aaaaacgaaa tcagatttaa aaacattctt ccccgttcca tccgcaaaaa atttaatctg 300
ggaaaattta tttacctgaa aaccaaccgc gtctgcgaaa gacagattaa ccgttacgag 360
ccggaacttc taagcaaaga tggcgacgtt tattatgacg gagttttcca gaccgaaaaa 420
tattttaaac cgctgcgaga aaggctgttg catgatttta cgctgacaaa acctcttgat 480
gcagcgaatc ttgatatgct tgccaaaatc cgggctgccg atgccgttgc cgttcatatc 540
cgtcgcggcg actatcttaa tccgcgcagc ccttttactt atttggataa ggattatttt 600
ctgaatgcga tggattatat cgggaaacgc gttgataaac cgcatttctt tattttttcc 660
agtgatacag actgggttcg gactaatata caaacagcct atccgcagac tatcgttgaa 720
attaatgatg aaaaacacgg ctattttgac ttggaactga tgcggaactg ccgccataac 780
attatcgcca acagcacatt ttcgtggtgg ggagcctggc tgaatacaaa tccggacaag 840
attgtcgttg cgcctaagca atggttcagg ccggacgctg ccgaatattc cggtgatatc 900
gttcctaacg actggataaa gttataa 927
<210> 11
<211> 291
<212> PRT
<213> Bacillus cereus
<400> 11
Met Lys Ile Ile Gln Val Ser Ser Gly Leu Gly Asn Gln Met Phe Gln
1 5 10 15
Tyr Ala Leu Tyr Lys Lys Ile Ser Leu Asn Asp Asn Asp Val Phe Leu
20 25 30
Asp Ser Ser Thr Ser Tyr Met Met Tyr Lys Asn Gln His Asn Gly Tyr
35 40 45
Glu Leu Glu Arg Ile Phe His Ile Lys Pro Arg His Ala Gly Lys Glu
50 55 60
Ile Ile Asp Asn Leu Ser Asp Leu Asp Ser Glu Leu Ile Ser Arg Ile
65 70 75 80
Arg Arg Lys Leu Phe Gly Ala Lys Lys Ser Met Tyr Val Glu Leu Lys
85 90 95
Glu Phe Glu Tyr Asp Pro Ile Ile Phe Glu Lys Lys Glu Thr Tyr Phe
100 105 110
Lys Gly Tyr Trp Gln Asn Tyr Asn Tyr Phe Lys Asp Ile Glu Gln Glu
115 120 125
Leu Arg Lys Asp Phe Val Phe Thr Glu Lys Leu Asp Lys Arg Asn Glu
130 135 140
Lys Leu Ala Asn Glu Ile Arg Asn Lys Asn Ser Val Ser Ile His Ile
145 150 155 160
Arg Arg Gly Asp Tyr Tyr Leu Asn Lys Val Tyr Glu Glu Lys Phe Gly
165 170 175
Asn Ile Ala Asn Leu Glu Tyr Tyr Leu Lys Ala Ile Asn Leu Val Lys
180 185 190
Lys Lys Ile Glu Asp Pro Lys Phe Tyr Ile Phe Ser Asp Asp Ile Asp
195 200 205
Trp Ala Gln Lys Asn Ile Asn Leu Thr Asn Asp Val Val Tyr Ile Ser
210 215 220
His Asn Gln Gly Asn Glu Ser Tyr Lys Asp Met Gln Leu Met Ser Leu
225 230 235 240
Cys Lys His Asn Ile Ile Ala Asn Ser Thr Phe Ser Trp Trp Gly Ala
245 250 255
Phe Leu Asn Asn Asn Asp Asp Lys Ile Val Val Ala Pro Lys Lys Trp
260 265 270
Ile Asn Ile Lys Gly Leu Glu Lys Val Glu Leu Phe Pro Glu Asn Trp
275 280 285
Ile Thr Tyr
290
<210> 12
<211> 876
<212> DNA
<213> Bacillus cereus
<400> 12
atgaagatta ttcaggtgtc ttctggcctg ggcaatcaga tgtttcagta cgcactgtac 60
aagaaaattt ctctgaatga taatgatgtt tttctggact catcaacttc ttatatgatg 120
tacaaaaatc agcataatgg ttatgaactg gaaagaattt ttcatatcaa gccacgtcac 180
gcaggcaagg agattatcga taacctgtca gacctggact cagagctgat ctctcgtatc 240
cgtcgtaagc tgttcggcgc taaaaaatct atgtacgtgg aactgaaaga atttgaatat 300
gatccaatta tttttgagaa aaaagaaact tatttcaaag gttactggca gaactacaat 360
tattttaagg atattgaaca ggaattacgt aaagattttg tttttactga aaaattagat 420
aaaagaaatg aaaaactggc taacgaaatt agaaataaaa attcagtttc aattcacatt 480
agaagaggtg attattatct gaataaagtt tatgaggaaa aatttggtaa tattgcaaat 540
ctggaatatt atctgaaagc tattaatctg gttaaaaaga aaatcgaaga tccaaaattt 600
tatatttttt cagatgatat tgattgggct cagaaaaata ttaatctgac taatgatgtg 660
gtgtatattt ctcataacca gggtaacgag tcatacaagg acatgcagct gatgtctctg 720
tgcaaacata atattattgc taactctact ttctcttggt ggggcgcttt cctgaacaat 780
aatgacgaca aaattgtggt tgctcctaaa aaatggatta atatcaaagg tctggaaaaa 840
gttgaactgt ttccagaaaa ttggattact tattga 876
<210> 13
<211> 281
<212> PRT
<213> Bacteroides eggerthii
<400> 13
Met Arg Leu Ile Lys Met Thr Gly Gly Leu Gly Asn Gln Met Phe Ile
1 5 10 15
Tyr Ala Phe Tyr Leu Arg Met Lys Lys Arg His Thr Asn Thr Arg Ile
20 25 30
Asp Leu Ser Asp Met Met His Tyr Asn Val His His Gly Tyr Glu Met
35 40 45
His Arg Val Phe Asn Leu Pro Lys Thr Glu Phe Cys Ile Asn Gln Pro
50 55 60
Leu Lys Lys Val Ile Glu Phe Leu Phe Phe Lys Lys Ile Tyr Glu Arg
65 70 75 80
Lys Gln Asp Pro Ser Ser Leu Leu Pro Phe Asp Lys Lys Tyr Leu Trp
85 90 95
Pro Leu Leu Tyr Phe Lys Gly Phe Tyr Gln Ser Glu Arg Phe Phe Ala
100 105 110
Asp Met Glu Asn Asp Ile Arg Ile Ala Phe Thr Phe Asn Ser Asp Leu
115 120 125
Phe Asn Glu Lys Thr Gln Ala Met Leu Thr Gln Ile Lys His Asn Glu
130 135 140
His Ala Val Ser Leu His Ile Arg Arg Gly Asp Tyr Leu Glu Pro Lys
145 150 155 160
His Trp Lys Thr Thr Gly Ser Val Cys Gln Leu Pro Tyr Tyr Leu Asn
165 170 175
Ala Ile Thr Glu Met Asn Lys Arg Ile Glu Gln Pro Ser Tyr Tyr Val
180 185 190
Phe Ser Asp Asp Ile Ala Trp Val Lys Glu Asn Leu Pro Leu Pro Gln
195 200 205
Ala Val Phe Ile Asp Trp Asn Lys Gly Ala Glu Ser Trp Gln Asp Met
210 215 220
Met Leu Met Ser His Cys Arg His His Ile Ile Cys Asn Ser Thr Phe
225 230 235 240
Ser Trp Trp Gly Ala Trp Leu Asn Pro Arg Glu Asn Lys Thr Val Ile
245 250 255
Met Pro Glu Arg Trp Phe Gln His Cys Asp Thr Pro Asn Ile Tyr Pro
260 265 270
Asp Gly Trp Ile Lys Val Pro Val Asn
275 280
<210> 14
<211> 846
<212> DNA
<213> Bacteroides eggerthii
<400> 14
atgagactga ttaaaatgac aggcggcctg ggcaaccaaa tgtttatcta cgctttctat 60
ctacgaatga aaaaacgtca tacaaatact cggatcgatt tgtccgacat gatgcattac 120
aacgtccacc atggttatga aatgcaccgc gtgttcaatc ttcccaaaac agaattctgt 180
atcaaccaac ctttgaaaaa ggttatagaa tttcttttct tcaagaaaat ctatgaacgc 240
aaacaagacc catcaagtct cctcccattc gataaaaaat acttatggcc tttgctatac 300
tttaaaggat tctatcagtc ggaaaggttc tttgccgata tggaaaatga catacgtata 360
gcctttacat tcaactcaga cctgttcaat gagaagaccc aagcaatgct aacgcaaata 420
aagcataacg agcatgccgt ttcactacat atccgccggg gagattattt agaacccaaa 480
cattggaaaa caacaggcag tgtgtgccaa ctgccctatt acctcaatgc tattaccgaa 540
atgaacaaac ggatagagca gccttcctat tatgtttttt cggatgacat agcctgggta 600
aaggaaaacc taccgttgcc acaggccgtc ttcattgatt ggaataaagg tgcagaaagc 660
tggcaggaca tgatgctgat gagccattgc cgccaccaca tcatttgcaa cagtacgttt 720
agctggtggg gggcatggtt gaaccccaga gagaataaga cggtaattat gcccgaacgt 780
tggtttcaac attgtgatac gcccaacatc tatcctgacg gttggataaa agtacccgtt 840
aactga 846
<210> 15
<211> 290
<212> PRT
<213> Bacteroides uniformis
<400> 15
Met Lys Ile Val Leu Pro Cys Trp Gly Leu Gly Asn Val Met Phe Gln
1 5 10 15
Tyr Ala Phe Leu Cys Glu Leu Arg Phe Arg Gly Arg Glu Ala Cys Cys
20 25 30
Phe Leu Leu His Lys Lys Leu Arg Phe Glu His Asn Gly Tyr Glu Leu
35 40 45
Asp Lys Leu Phe Lys Val His Pro Tyr Lys Gly Leu Asn Ile Phe Gln
50 55 60
Arg Ile Tyr Ile Arg Leu Val Glu Phe Leu Gly Ala Met Glu Leu Pro
65 70 75 80
Tyr Phe Lys Leu Ile Ser Leu Phe Phe Lys Glu Val Ser Val Lys Glu
85 90 95
Asn Phe Ile Tyr Tyr Asp Glu Val Phe Gln His Pro His Glu Asn Cys
100 105 110
Tyr Phe Lys Gly Thr Trp Gln Ser Pro Leu Tyr Phe Val His Ala Lys
115 120 125
Gln Glu Ile Leu Asp Thr Phe Arg Phe Asp Lys Arg Met Ile Ser Ser
130 135 140
Tyr Thr Arg Asp Val Leu Asn Gln Ile Glu Lys Thr Pro Asn Ser Val
145 150 155 160
Ser Leu His Val Arg Arg Gly Asp Tyr Leu Lys Pro Asp Phe Glu Gly
165 170 175
Leu Ser Lys Cys Cys Pro Asn Asp Tyr Phe Glu Arg Ala Ile Gln Tyr
180 185 190
Met Lys Glu His Met Asp Thr Pro Val Phe Tyr Val Phe Ser Asp Asp
195 200 205
Met Asp Tyr Val Lys Glu Asn Ile Lys Leu Glu Asp Ala Phe Tyr Ile
210 215 220
Asp Gly Asn Arg Gly Asn Asp Ser Trp Gln Asp Met Phe Leu Met Ser
225 230 235 240
Ser Cys Asn His Asn Ile Ile Ala Asn Ser Thr Phe Ser Trp Trp Ser
245 250 255
Ala Phe Leu Asn Ser His Asp Asn Lys Ile Val Ile Ala Pro Lys Arg
260 265 270
Trp Trp Tyr Tyr Phe Glu Thr Asp Asp Val Val Pro Glu Glu Trp Ile
275 280 285
Arg Met
290
<210> 16
<211> 873
<212> DNA
<213> Bacteroides uniformis
<400> 16
atgaaaatag tattgccatg ttggggatta ggaaatgtta tgtttcagta cgcattttta 60
tgtgaactgc gttttagagg aagagaagct tgttgtttct tattacataa aaaattacgt 120
tttgaacata atggatatga gcttgataaa ttgtttaaag tacatcctta taaaggactt 180
aatattttcc aaaggatata tatacgttta gtagagttct tgggggctat ggaattacct 240
tattttaaat taatcagcct tttctttaaa gaggtaagtg ttaaagaaaa ttttatatat 300
tatgatgagg tatttcaaca tccacatgaa aattgctatt ttaaaggaac ttggcagagt 360
cctttgtatt ttgttcatgc caagcaagag atattggata catttcgatt tgacaaaaga 420
atgatttctt cttatacaag agatgtttta aaccaaatag aaaagactcc taacagtgta 480
agtttgcatg tacgtcgcgg tgattatttg aaaccagatt ttgaaggatt gagtaaatgt 540
tgtcctaacg attattttga aagggcaatt caatatatga aagagcatat ggataccccg 600
gttttctatg tcttttctga tgatatggat tatgtgaagg aaaatataaa gttggaagac 660
gctttctata ttgatggtaa tagggggaat gattcttggc aagatatgtt tctaatgagt 720
tcatgcaatc ataatattat agctaattct acatttagtt ggtggagtgc ttttcttaat 780
tcccatgaca ataaaattgt tattgcacca aaacgctggt ggtattattt tgagacggat 840
gatgttgtac cggaagaatg gataagaatg tga 873
<210> 17
<211> 313
<212> PRT
<213> Neocallimastix californiae
<400> 17
Met Lys Ile Leu Ile Phe Ser Val Ser Phe Ser Phe Phe Tyr Leu Leu
1 5 10 15
His Leu Phe Phe Ile Leu Tyr Tyr Ile Ile Ser Lys Ala Ser Lys Glu
20 25 30
Ile Arg Ile Val Lys Leu Cys Gly Gly Leu Gly Asn Gln Met Phe Gln
35 40 45
Tyr Ala Tyr Gly Lys Ser Leu Glu His Lys Leu Gln Glu Lys Val Leu
50 55 60
Phe Asp Val Ser Trp Tyr Lys Tyr Leu Asn Lys Lys Lys Asn Glu Lys
65 70 75 80
Leu Thr Lys Arg Glu Tyr Gly Leu Gly Ile Phe Asn Leu Lys Ile Ser
85 90 95
Phe Pro Thr Lys Lys Gln Leu Lys Lys Cys Asn Asn Lys Thr Phe Glu
100 105 110
Lys Lys Ser Tyr Ile Tyr Asp Glu Glu Leu Leu Gln Asn Lys Gly Ser
115 120 125
Ser Tyr Tyr Val Gly Tyr Phe Gln Asn Glu Lys Tyr Phe Lys Asp Ile
130 135 140
Lys Asp Asn Ile Lys Lys Ile Tyr Thr Phe Pro Lys Ile His Asp Thr
145 150 155 160
Asp Lys Phe Asn Gln Gln Trp Ile Asn Lys Ile Lys Asn Val Lys Asn
165 170 175
Ser Val Phe Ile His Ile Arg Arg Ala Asp Tyr Ile Tyr Leu Asp Gly
180 185 190
Trp Val Leu Ser Met Asp Tyr Tyr Lys Lys Ala Ile Glu Tyr Ile Lys
195 200 205
Lys Asn Val Glu Asn Pro Thr Phe Phe Ile Phe Cys Tyr Gln Cys Lys
210 215 220
Asp Tyr Val Glu Glu Gln Phe Lys Leu Asp Asp Thr Ile Gln Phe Ile
225 230 235 240
Gly Glu Thr Asn Ser Ile Asn Asn Glu Asn Trp Lys Asp Met Val Leu
245 250 255
Met Lys Glu Cys Lys Tyr Ala Ile Ile Ala Asn Ser Ser Phe Ser Trp
260 265 270
Trp Ala Ala Trp Leu Gly Arg Ala Asn Glu Glu Gly Ile Val Ile Ala
275 280 285
Pro Ser Pro Phe Ile Lys Asn Asn Asp Glu Ile Ile Cys Asp Asn Trp
290 295 300
Ile Lys Ile Asn Ser Asn Asn Ser Ser
305 310
<210> 18
<211> 942
<212> DNA
<213> Neocallimastix californiae
<400> 18
atgaaaatat taatattctc tgtttctttt tcctttttct atttattaca tttatttttc 60
atactttact atattatttc taaagcatcc aaagaaataa gaatagtaaa actatgtgga 120
ggtttaggaa atcaaatgtt tcaatatgct tatgggaaat ctcttgaaca caaattacaa 180
gaaaaggtat tatttgatgt ttcatggtat aaatatttga ataaaaagaa aaatgaaaaa 240
ttaactaaaa gggaatatgg attgggtata tttaatttaa aaatatcttt tcctactaaa 300
aaacaactaa aaaaatgtaa taataaaaca tttgaaaaga agagttacat atatgatgaa 360
gaattattac aaaataaagg atcatcgtat tatgtgggat attttcaaaa tgaaaaatat 420
tttaaagata ttaaagataa tataaaaaaa atatatacat ttccaaaaat tcatgatact 480
gataaattta atcaacaatg gataaataaa ataaaaaacg tcaaaaattc cgtctttatt 540
catatcagaa gagcagatta tatatattta gatggatggg ttctttcaat ggattattat 600
aaaaaggcaa ttgagtatat aaaaaaaaat gtagaaaatc ctacattttt catattttgt 660
taccaatgta aagattatgt tgaagagcaa ttcaaattag atgatacaat tcagtttata 720
ggagaaacaa attcaattaa taatgaaaat tggaaagata tggttttaat gaaggaatgt 780
aaatatgcaa taatagcaaa ttcatcattt agttggtggg cagcatggct tggaagagcc 840
aatgaagaag gcattgtaat tgctccttct ccatttatta aaaataatga tgaaataata 900
tgtgataatt ggattaaaat taatagtaat aattcttcat ag 942
<210> 19
<211> 254
<212> PRT
<213> Saccharomyces cerevisiae
<400> 19
Met Ser Ile Ala Glu Phe Ala Tyr Lys Glu Lys Pro Glu Thr Leu Val
1 5 10 15
Leu Phe Asp Val Asp Gly Thr Leu Thr Pro Ala Arg Leu Thr Val Ser
20 25 30
Glu Glu Val Arg Lys Thr Leu Ala Lys Leu Arg Asn Lys Cys Cys Ile
35 40 45
Gly Phe Val Gly Gly Ser Asp Leu Ser Lys Gln Leu Glu Gln Leu Gly
50 55 60
Pro Asn Val Leu Asp Glu Phe Asp Tyr Ser Phe Ser Glu Asn Gly Leu
65 70 75 80
Thr Ala Tyr Arg Leu Gly Lys Glu Leu Ala Ser Gln Ser Phe Ile Asn
85 90 95
Trp Leu Gly Glu Glu Lys Tyr Asn Lys Leu Ala Val Phe Ile Leu Arg
100 105 110
Tyr Leu Ser Glu Ile Asp Leu Pro Lys Arg Arg Gly Thr Phe Leu Glu
115 120 125
Phe Arg Asn Gly Met Ile Asn Val Ser Pro Ile Gly Arg Asn Ala Ser
130 135 140
Thr Glu Glu Arg Asn Glu Phe Glu Arg Tyr Asp Lys Glu His Gln Ile
145 150 155 160
Arg Ala Lys Phe Val Glu Ala Leu Lys Lys Glu Phe Pro Asp Tyr Gly
165 170 175
Leu Thr Phe Ser Ile Gly Gly Gln Ile Ser Phe Asp Val Phe Pro Ala
180 185 190
Gly Trp Asp Lys Thr Tyr Cys Leu Gln His Val Glu Lys Asp Gly Phe
195 200 205
Lys Glu Ile His Phe Phe Gly Asp Lys Thr Met Val Gly Gly Asn Asp
210 215 220
Tyr Glu Ile Phe Val Asp Glu Arg Thr Ile Gly His Ser Val Gln Ser
225 230 235 240
Pro Asp Asp Thr Val Lys Ile Leu Thr Glu Leu Phe Asn Leu
245 250
<210> 20
<211> 765
<212> DNA
<213> Saccharomyces cerevisiae
<400> 20
atgagtatcg ctgaattcgc ttacaaggaa aaaccagaaa ctttggtttt attcgatgtt 60
gatggtacct tgacaccagc cagattaact gtttctgaag aagttagaaa aactttggcc 120
aagttgagaa acaagtgctg cattggtttt gtcggtggtt ctgacttaag caagcaatta 180
gaacagttag gcccaaacgt tttagatgaa tttgactatt ctttctctga aaatggtttg 240
accgcctaca gattaggtaa ggaattagct tctcaatcct tcatcaactg gctcggtgag 300
gaaaaataca ataaattggc cgtcttcatt ttgagatatc tatctgaaat tgacttgcca 360
aagagaagag gtactttctt ggaatttaga aatggtatga tcaacgtttc cccaattggt 420
agaaatgctt ctactgagga aagaaacgaa ttcgaaagat acgataagga acaccaaatc 480
agagccaagt tcgttgaagc tttgaaaaag gaattcccag actacggttt gactttctcc 540
attggtggcc aaatctcttt cgacgttttc cccgctggtt gggataagac ctactgtttg 600
caacacgttg aaaaagatgg tttcaaggaa attcatttct ttggtgacaa gactatggtc 660
ggtggtaacg attacgaaat ttttgtcgat gaaagaacca tcggacattc agtacaatcc 720
cctgatgaca ccgtcaaaat tttgactgaa ctattcaact tatag 765
<210> 21
<211> 361
<212> PRT
<213> Saccharomyces cerevisiae
<400> 21
Met Lys Gly Leu Ile Leu Val Gly Gly Tyr Gly Thr Arg Leu Arg Pro
1 5 10 15
Leu Thr Leu Thr Val Pro Lys Pro Leu Val Glu Phe Gly Asn Arg Pro
20 25 30
Met Ile Leu His Gln Ile Glu Ala Leu Ala Asn Ala Gly Val Thr Asp
35 40 45
Ile Val Leu Ala Val Asn Tyr Arg Pro Glu Val Met Val Glu Thr Leu
50 55 60
Lys Lys Tyr Glu Lys Glu Tyr Gly Val Asn Ile Thr Phe Ser Val Glu
65 70 75 80
Thr Glu Pro Leu Gly Thr Ala Gly Pro Leu Lys Leu Ala Glu Asp Val
85 90 95
Leu Lys Lys Asp Asn Ser Pro Phe Phe Val Leu Asn Ser Asp Val Ile
100 105 110
Cys Glu Tyr Pro Phe Lys Glu Leu Ala Asp Phe His Lys Ala His Gly
115 120 125
Gly Lys Gly Thr Ile Val Ala Thr Lys Val Asp Glu Pro Ser Lys Tyr
130 135 140
Gly Val Ile Val His Asp Ile Ala Thr Pro Asn Leu Ile Asp Arg Phe
145 150 155 160
Val Glu Lys Pro Lys Glu Phe Val Gly Asn Arg Ile Asn Ala Gly Leu
165 170 175
Tyr Ile Leu Asn Pro Glu Val Ile Asp Leu Ile Glu Met Lys Pro Thr
180 185 190
Ser Ile Glu Lys Glu Thr Phe Pro Ile Leu Val Glu Glu Lys Gln Leu
195 200 205
Tyr Ser Phe Asp Leu Glu Gly Phe Trp Met Asp Val Gly Gln Pro Lys
210 215 220
Asp Phe Leu Ser Gly Thr Val Leu Tyr Leu Asn Ser Leu Ala Lys Arg
225 230 235 240
Gln Pro Lys Lys Leu Ala Thr Gly Ala Asn Ile Val Gly Asn Ala Leu
245 250 255
Ile Asp Pro Thr Ala Lys Ile Ser Ser Thr Ala Lys Ile Gly Pro Asp
260 265 270
Val Val Ile Gly Pro Asn Val Thr Ile Gly Asp Gly Val Arg Ile Thr
275 280 285
Arg Ser Val Val Leu Cys Asn Ser Thr Ile Lys Asn His Ser Leu Val
290 295 300
Lys Ser Thr Ile Val Gly Trp Asn Ser Thr Val Gly Gln Trp Cys Arg
305 310 315 320
Leu Glu Gly Val Thr Val Leu Gly Asp Asp Val Glu Val Lys Asp Glu
325 330 335
Ile Tyr Ile Asn Gly Gly Lys Val Leu Pro His Lys Ser Ile Ser Asp
340 345 350
Asn Val Pro Lys Glu Ala Ile Ile Met
355 360
<210> 22
<211> 1086
<212> DNA
<213> Saccharomyces cerevisiae
<400> 22
atgaaaggtt taattttagt cggtggttac ggtaccagat tgagaccttt aactttgacc 60
gttccaaagc cactggttga attcggtaat agaccaatga ttttacacca aatcgaggct 120
ttagccaacg ctggtgttac tgacatcgtt cttgctgtta attacagacc agaagtcatg 180
gtggaaactt tgaagaagta cgaaaaggaa tatggtgtta acatcacttt ctctgtagaa 240
actgaaccat taggtactgc aggtccattg aaattggctg aagatgtttt gaagaaggac 300
aactctccat ttttcgtcct aaactccgac gtcatttgcg aatatccatt caaggaattg 360
gctgacttcc acaaagctca cggtggtaaa ggtaccattg ttgctaccaa ggtcgacgaa 420
ccttctaaat acggtgtcat tgtccatgat atagctactc caaacttgat tgacagattt 480
gttgaaaagc caaaggaatt tgttggtaac agaattaacg ccggtttgta cattttaaac 540
ccagaagtca ttgacttgat tgaaatgaag ccaacttcaa ttgaaaagga aactttccca 600
atcttggtcg aagaaaaaca actatattcc ttcgatttgg aaggtttctg gatggatgtt 660
ggtcaaccaa aggacttctt gtctggtacc gttctttact tgaactcttt ggccaagaga 720
caaccaaaaa aattggctac aggtgccaac attgttggta atgccttgat cgacccaacc 780
gctaagattt cctccactgc taagattggc ccagacgtgg ttatcggtcc taatgtcacc 840
atcggtgatg gtgttagaat caccagatct gttgttttgt gcaactccac catcaagaac 900
cactccttgg tcaaatctac catcgtaggc tggaactcta ccgttggtca atggtgtcgt 960
ttggaaggtg tcactgtctt gggtgacgac gttgaagtta aggacgaaat ctacatcaac 1020
ggtggtaaag tcttacctca taagtctatc tccgataatg ttccaaagga agctattatt 1080
atgtga 1086
<210> 23
<211> 429
<212> PRT
<213> Saccharomyces cerevisiae
<400> 23
Met Ser Asn Lys Leu Phe Arg Leu Asp Ala Gly Tyr Gln Gln Tyr Asp
1 5 10 15
Trp Gly Lys Ile Gly Ser Ser Ser Ala Val Ala Gln Phe Ala Ala His
20 25 30
Ser Asp Pro Ser Val Gln Ile Glu Gln Asp Lys Pro Tyr Ala Glu Leu
35 40 45
Trp Met Gly Thr His Ser Lys Met Pro Ser Tyr Asn His Glu Ser Lys
50 55 60
Glu Ser Leu Arg Asp Ile Ile Ser Lys Asn Pro Ser Ala Met Leu Gly
65 70 75 80
Lys Asp Ile Ile Asp Lys Phe His Ala Thr Asn Glu Leu Pro Phe Leu
85 90 95
Phe Lys Val Leu Ser Ile Glu Lys Val Leu Ser Ile Gln Ala His Pro
100 105 110
Asp Lys Ala Leu Gly Lys Ile Leu His Ala Gln Asp Pro Lys Asn Tyr
115 120 125
Pro Asp Asp Asn His Lys Pro Glu Met Ala Ile Ala Val Thr Asp Phe
130 135 140
Glu Gly Phe Cys Gly Phe Lys Pro Leu Gln Glu Ile Ala Asp Glu Leu
145 150 155 160
Lys Arg Ile Pro Glu Leu Arg Asn Ile Val Gly Glu Glu Thr Ser Arg
165 170 175
Asn Phe Ile Glu Asn Ile Gln Pro Ser Ala Gln Lys Gly Ser Pro Glu
180 185 190
Asp Glu Gln Asn Lys Lys Leu Leu Gln Ala Val Phe Ser Arg Val Met
195 200 205
Asn Ala Ser Asp Asp Lys Ile Lys Ile Gln Ala Arg Ser Leu Val Glu
210 215 220
Arg Ser Lys Asn Ser Pro Ser Asp Phe Asn Lys Pro Asp Leu Pro Glu
225 230 235 240
Leu Ile Gln Arg Leu Asn Lys Gln Phe Pro Asp Asp Val Gly Leu Phe
245 250 255
Cys Gly Cys Leu Leu Leu Asn His Cys Arg Leu Asn Ala Gly Glu Ala
260 265 270
Ile Phe Leu Arg Ala Lys Asp Pro His Ala Tyr Ile Ser Gly Asp Ile
275 280 285
Met Glu Cys Met Ala Ala Ser Asp Asn Val Val Arg Ala Gly Phe Thr
290 295 300
Pro Lys Phe Lys Asp Val Lys Asn Leu Val Ser Met Leu Thr Tyr Thr
305 310 315 320
Tyr Asp Pro Val Glu Lys Gln Lys Met Gln Pro Leu Lys Phe Asp Arg
325 330 335
Ser Ser Gly Asn Gly Lys Ser Val Leu Tyr Asn Pro Pro Ile Glu Glu
340 345 350
Phe Ala Val Leu Glu Thr Thr Phe Asp Glu Lys Leu Gly Gln Arg His
355 360 365
Phe Glu Gly Val Asp Gly Pro Ser Ile Leu Ile Thr Thr Lys Gly Asn
370 375 380
Gly Tyr Ile Lys Ala Asp Gly Gln Lys Leu Lys Ala Glu Pro Gly Phe
385 390 395 400
Val Phe Phe Ile Ala Pro His Leu Pro Val Asp Leu Glu Ala Glu Asp
405 410 415
Glu Ala Phe Thr Thr Tyr Arg Ala Phe Val Glu Pro Asn
420 425
<210> 24
<211> 1290
<212> DNA
<213> Saccharomyces cerevisiae
<400> 24
atgtccaaca agctgttcag gttagatgca ggttaccaac aatacgactg gggtaaaatc 60
ggctcttctt cagctgtcgc tcaatttgct gcccattctg acccctctgt tcaaattgaa 120
caagataaac catatgcaga gttatggatg ggtacccaca gcaagatgcc ttcctacaac 180
catgagtcta aggaatccct gagagatatc atctccaaga acccctctgc catgttaggt 240
aaggacatta ttgataagtt ccacgccaca aatgaattgc ccttcctttt caaagttttg 300
tccattgaaa aagtcttgtc tattcaagca catcccgaca aagccttggg taaaatattg 360
cacgctcaag atcctaagaa ctatcctgat gataatcaca aacctgaaat ggccatcgct 420
gtgactgact ttgaaggttt ctgcgggttc aaacctttgc aagagattgc agatgaattg 480
aaacgtattc ctgaattacg caacattgtt ggtgaagaaa cttccaggaa ttttattgag 540
aacattcaac cttctgctca gaaaggttcc ccagaagatg agcaaaacaa aaagctattg 600
caagctgttt tcagcagggt catgaacgct tcggatgaca aaatcaagat tcaagctcgc 660
tccttggtcg aaagatcaaa gaattctcca tcagacttta acaaacctga tttaccagaa 720
ttaattcaaa gactgaataa acagttccct gatgacgtgg gtttgttttg tggatgttta 780
ttgttgaatc actgcagatt gaatgctggt gaagccatct ttttaagagc taaggatcct 840
cacgcctata taagcggtga tattatggaa tgtatggctg cttctgacaa cgtagttaga 900
gcaggcttca ctccaaaatt caaggatgtt aaaaacttgg tctccatgtt aacctataca 960
tatgatcctg tggaaaagca aaaaatgcag cctttaaagt tcgacaggtc ctctggtaac 1020
ggtaagtcag ttttatataa ccctccaatc gaagaatttg ctgtattgga gactactttt 1080
gatgagaaac ttggtcaaag gcattttgaa ggtgttgatg gtccaagtat cttaatcact 1140
acaaaaggta atggttacat taaagcagat ggccaaaaat tgaaagctga acccggtttt 1200
gtctttttca tcgctccaca tttgcctgtt gatttggaag ctgaagatga ggcgtttact 1260
acctatagag cctttgtgga accaaattag 1290
<210> 25
<211> 398
<212> PRT
<213> Saccharomyces cerevisiae
<400> 25
Met Ser Thr Leu Asp Ser His Ser Leu Lys Leu Gln Ser Gly Ser Lys
1 5 10 15
Phe Val Lys Ile Lys Pro Val Asn Asn Leu Arg Ser Ser Ser Ser Ala
20 25 30
Asp Phe Val Ser Pro Pro Asn Ser Lys Leu Gln Ser Leu Ile Trp Gln
35 40 45
Asn Pro Leu Gln Asn Val Tyr Ile Thr Lys Lys Pro Trp Thr Pro Ser
50 55 60
Thr Arg Glu Ala Met Val Glu Phe Ile Thr His Leu His Glu Ser Tyr
65 70 75 80
Pro Glu Val Asn Val Ile Val Gln Pro Asp Val Ala Glu Glu Ile Ser
85 90 95
Gln Asp Phe Lys Ser Pro Leu Glu Asn Asp Pro Asn Arg Pro His Ile
100 105 110
Leu Tyr Thr Gly Pro Glu Gln Asp Ile Val Asn Arg Thr Asp Leu Leu
115 120 125
Val Thr Leu Gly Gly Asp Gly Thr Ile Leu His Gly Val Ser Met Phe
130 135 140
Gly Asn Thr Gln Val Pro Pro Val Leu Ala Phe Ala Leu Gly Thr Leu
145 150 155 160
Gly Phe Leu Ser Pro Phe Asp Phe Lys Glu His Lys Lys Val Phe Gln
165 170 175
Glu Val Ile Ser Ser Arg Ala Lys Cys Leu His Arg Thr Arg Leu Glu
180 185 190
Cys His Leu Lys Lys Lys Asp Ser Asn Ser Ser Ile Val Thr His Ala
195 200 205
Met Asn Asp Ile Phe Leu His Arg Gly Asn Ser Pro His Leu Thr Asn
210 215 220
Leu Asp Ile Phe Ile Asp Gly Glu Phe Leu Thr Arg Thr Thr Ala Asp
225 230 235 240
Gly Val Ala Leu Ala Thr Pro Thr Gly Ser Thr Ala Tyr Ser Leu Ser
245 250 255
Ala Gly Gly Ser Ile Val Ser Pro Leu Val Pro Ala Ile Leu Met Thr
260 265 270
Pro Ile Cys Pro Arg Ser Leu Ser Phe Arg Pro Leu Ile Leu Pro His
275 280 285
Ser Ser His Ile Arg Ile Lys Ile Gly Ser Lys Leu Asn Gln Lys Pro
290 295 300
Val Asn Ser Val Val Lys Leu Ser Val Asp Gly Ile Pro Gln Gln Asp
305 310 315 320
Leu Asp Val Gly Asp Glu Ile Tyr Val Ile Asn Glu Val Gly Thr Ile
325 330 335
Tyr Ile Asp Gly Thr Gln Leu Pro Thr Thr Arg Lys Thr Glu Asn Asp
340 345 350
Phe Asn Asn Ser Lys Lys Pro Lys Arg Ser Gly Ile Tyr Cys Val Ala
355 360 365
Lys Thr Glu Asn Asp Trp Ile Arg Gly Ile Asn Glu Leu Leu Gly Phe
370 375 380
Asn Ser Ser Phe Arg Leu Thr Lys Arg Gln Thr Asp Asn Asp
385 390 395
<210> 26
<211> 1197
<212> DNA
<213> Saccharomyces cerevisiae
<400> 26
atgagtacgt tggattcaca ttccctaaag ttacagagcg gctcgaagtt tgtaaaaata 60
aagccagtaa ataacttgag gagtagttca tcagcagatt tcgtgtcccc accaaattcc 120
aaattacaat ctttaatctg gcagaaccct ttacaaaatg tttatataac taaaaaacca 180
tggactccat ccacaagaga agcgatggtt gaattcataa ctcatttaca tgagtcatac 240
cccgaggtga acgtcattgt tcaacccgat gtggcagaag aaatttccca ggatttcaaa 300
tctcctttgg agaatgatcc caaccgacct catatacttt atactggtcc tgaacaagat 360
atcgtaaaca gaacagactt attggtgaca ttgggaggtg atgggactat tttacacggc 420
gtatcaatgt tcggaaatac gcaagttcct ccggttttag catttgctct gggcactctg 480
ggctttctat caccgtttga ttttaaggag cataaaaagg tctttcagga agtaatcagc 540
tctagagcca aatgtttgca tagaacacgg ctagaatgtc atttgaaaaa aaaggatagc 600
aactcatcta ttgtgaccca tgctatgaat gacatattct tacatagggg taattcccct 660
catctcacta acctggacat tttcattgat ggggaatttt tgacaagaac gacagcagat 720
ggtgttgcat tggccactcc aacgggttcc acagcatatt cattatcagc aggtggatct 780
attgtttccc cattagtccc tgctatttta atgacaccaa tttgtcctcg ctctttgtca 840
ttccgaccac tgattttgcc tcattcatcc cacattagga taaagatagg ttccaaattg 900
aaccaaaaac cagtcaacag tgtggtaaaa ctttctgttg atggtattcc tcaacaggat 960
ttagatgttg gtgatgaaat ttatgttata aatgaggtcg gcactatata catagatggt 1020
actcagcttc cgacgacaag aaaaactgaa aatgacttta ataattcaaa aaagcctaaa 1080
aggtcaggga tttattgtgt cgccaagacc gagaatgact ggattagagg aatcaatgaa 1140
cttttaggat tcaattctag ctttaggctg accaagagac agactgataa tgattaa 1197

Claims (10)

1.一株高产2’-岩藻糖基乳糖的酿酒酵母工程菌株,其特征在于,
所述酿酒酵母工程菌株中含有重组的乳糖透性酶(Lactosepermease)、重组的GDP-甘露糖脱水酶(GDP-mannose-4,6-dehydratase)、重组的GDP-岩藻糖合酶(GDP-L-fucosesynthase)以及重组的α-1,2-岩藻糖基转移酶(α-1,2fucosyltransferase),所述α-1,2-岩藻糖基转移酶来源于蜡样芽孢杆菌(Bacillus cereus);
所述酿酒酵母工程菌株还包含重组的甘露糖磷酸异构酶(Phosphomannomutase)和重组的GDP-甘露糖焦磷酸酶(GDP-mannose pyrophosphorylase)。
2.根据权利要求1所述的酿酒酵母工程菌株,其特征在于,所述酿酒酵母工程菌株还包含重组的甘露糖-6-磷酸异构酶(Mannose-6-phosphate isomerase)。
3.根据权利要求2所述的酿酒酵母工程菌株,其特征在于,所述酿酒酵母工程菌株还包含重组的无线粒体信号肽的NADH激酶(NADHkinase)。
4.根据权利要求1-3任一所述的酿酒酵母工程菌株,其特征在于,所述α-1,2-岩藻糖基转移酶的氨基酸序列如SEQ ID No.11所示;
优选的,所述乳糖透性酶来源于乳酸克鲁维斯酵母;更优选的,所述乳糖透性酶的氨基酸序列如SEQ ID No.1所示;
优选的,所述GDP-甘露糖脱水酶和GDP-岩藻糖合酶来源于大肠杆菌;更优选的,所述GDP-甘露糖脱水酶的氨基酸序列如SEQ ID No.3所示,所述GDP-岩藻糖合酶的氨基酸序列如SEQ ID No.5所示。
5.根据权利要求1-3任一所述的酿酒酵母工程菌株,其特征在于,所述甘露糖磷酸异构酶和GDP-甘露糖焦磷酸酶来源于酿酒酵母;优选的,所述甘露糖磷酸异构酶的氨基酸序列如SEQ ID No.19所示,所述GDP-甘露糖焦磷酸酶的氨基酸序列如SEQ ID No.21所示。
6.根据权利要求2-3任一所述的酿酒酵母工程菌株,其特征在于,所述甘露糖-6-磷酸异构酶来源于酿酒酵母;优选的,所述甘露糖-6-磷酸异构酶的氨基酸序列如SEQ ID No.23所示。
7.根据权利要求3所述的酿酒酵母工程菌株,其特征在于,所述NADH激酶来源于酿酒酵母;优选的,所述NADH激酶的氨基酸序列如SEQ ID No.25所示。
8.根据权利要求1-7任一所述的酿酒酵母工程菌株,其特征在于,所述酿酒酵母工程菌株的出发菌株为酿酒酵母W303-1a。
9.权利要求1-8任一所述的酿酒酵母工程菌株的制备方法,其特征在于,所述方法包括将所述目的基因重组到酿酒酵母中的步骤;
优选的,所述方法包括将所述目的基因整合到酿酒酵母的基因组中的步骤;更优选的,所述目的基因的整合位点包括TRP1、URA3、LEU2或HIS3。
10.权利要求1-8任一所述的酿酒酵母工程菌株在生产2’-岩藻糖基乳糖中的应用。
CN202010187632.9A 2020-03-17 2020-03-17 一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用 Active CN111471606B (zh)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202010187632.9A CN111471606B (zh) 2020-03-17 2020-03-17 一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN202010187632.9A CN111471606B (zh) 2020-03-17 2020-03-17 一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用

Publications (2)

Publication Number Publication Date
CN111471606A true CN111471606A (zh) 2020-07-31
CN111471606B CN111471606B (zh) 2022-03-08

Family

ID=71747531

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202010187632.9A Active CN111471606B (zh) 2020-03-17 2020-03-17 一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用

Country Status (1)

Country Link
CN (1) CN111471606B (zh)

Cited By (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113234699A (zh) * 2020-12-28 2021-08-10 西南大学 α-1,2-岩藻糖基转移酶及其应用
CN113502297A (zh) * 2021-06-11 2021-10-15 华南理工大学 一种合成鸟苷二磷酸岩藻糖的重组毕赤酵母及其构建方法与应用
CN113528480A (zh) * 2021-07-07 2021-10-22 上海交通大学 一种α-1,2-岩藻糖基转移酶突变体及其构建方法和应用
CN114480465A (zh) * 2022-03-08 2022-05-13 江南大学 一种产生2’-岩藻糖基乳糖的枯草芽孢杆菌及其应用
CN116042682A (zh) * 2022-12-22 2023-05-02 芝诺(苏州)生物科技有限公司 一株产2’-岩藻糖基乳糖的工程菌及其构建方法和应用
CN116200360A (zh) * 2023-01-30 2023-06-02 芝诺(苏州)生物科技有限公司 一种futCB突变体及生物合成2’-岩藻糖基乳糖的方法
WO2024067774A1 (zh) * 2022-09-28 2024-04-04 山东大学 一种提高基因表达水平的酿酒酵母工程菌及其构建方法与应用

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20170081689A1 (en) * 2012-07-25 2017-03-23 Glycosyn LLC Alpha (1,2) Fucosyltransferases Suitable for Use in the Production of Fucosylated Oligosaccharides
CN106795484A (zh) * 2014-05-15 2017-05-31 格里康辛有限责任公司 用于在产生岩藻糖基化低聚糖时使用的α(1,2)岩藻糖基转移酶变种
US20180298413A1 (en) * 2012-12-20 2018-10-18 The Board Of Trustees Of The University Of Illinois Biosynthesis of Oligosaccharides
CN111051498A (zh) * 2017-06-30 2020-04-21 齐米科技股份有限公司 用于增强低聚糖利用的工程化的微生物

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20170081689A1 (en) * 2012-07-25 2017-03-23 Glycosyn LLC Alpha (1,2) Fucosyltransferases Suitable for Use in the Production of Fucosylated Oligosaccharides
US20180298413A1 (en) * 2012-12-20 2018-10-18 The Board Of Trustees Of The University Of Illinois Biosynthesis of Oligosaccharides
CN106795484A (zh) * 2014-05-15 2017-05-31 格里康辛有限责任公司 用于在产生岩藻糖基化低聚糖时使用的α(1,2)岩藻糖基转移酶变种
CN111051498A (zh) * 2017-06-30 2020-04-21 齐米科技股份有限公司 用于增强低聚糖利用的工程化的微生物

Non-Patent Citations (7)

* Cited by examiner, † Cited by third party
Title
BUSSEY,H. 等: "NCBI Reference Sequence: NM_001184002.1", 《GENBANK》 *
FARIA CRISTIANA等: "Production of mannosylglycerate in Saccharomyces cerevisiae by metabolic engineering and bioprocess optimization", 《MICROBIAL CELL FACTORIES》 *
HOLLANDS KERRY 等: "Engineering two species of yeast as cell factories for 2"-fucosyllactose", 《METABOLIC ENGINEERING》 *
HOU JIN 等: "Impact of overexpressing NADH kinase on glucose and xylose metabolism in recombinant xylose-utilizing Saccharomyces cerevisiae", 《APPLIED MICROBIAL AND CELL PHYSIOLOGY》 *
LIM HAYOON: "Metabolic engineering of Saccharomyces cerevisiae for efficient production of 2’-fucosyllactose", 《IDEALS》 *
LIU JING-JING 等: "Biosynthesis of a Functional Human Milk Oligosaccharide, 2′-Fucosyllactose, and L‑Fucose Using Engineered Saccharomyces cerevisiae", 《ACS SYNTHETIC BIOLOGY》 *
无: "NCBI Reference Sequence: WP_002174293.1", 《GENBANK》 *

Cited By (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113234699A (zh) * 2020-12-28 2021-08-10 西南大学 α-1,2-岩藻糖基转移酶及其应用
CN113502297A (zh) * 2021-06-11 2021-10-15 华南理工大学 一种合成鸟苷二磷酸岩藻糖的重组毕赤酵母及其构建方法与应用
CN113502297B (zh) * 2021-06-11 2023-08-18 华南理工大学 一种合成鸟苷二磷酸岩藻糖的重组毕赤酵母及其构建方法与应用
CN113528480A (zh) * 2021-07-07 2021-10-22 上海交通大学 一种α-1,2-岩藻糖基转移酶突变体及其构建方法和应用
CN113528480B (zh) * 2021-07-07 2023-02-17 上海交通大学 一种α-1,2-岩藻糖基转移酶突变体及其构建方法和应用
CN114480465A (zh) * 2022-03-08 2022-05-13 江南大学 一种产生2’-岩藻糖基乳糖的枯草芽孢杆菌及其应用
CN114480465B (zh) * 2022-03-08 2024-03-26 江南大学 一种产生2’-岩藻糖基乳糖的枯草芽孢杆菌及其应用
WO2024067774A1 (zh) * 2022-09-28 2024-04-04 山东大学 一种提高基因表达水平的酿酒酵母工程菌及其构建方法与应用
CN116042682A (zh) * 2022-12-22 2023-05-02 芝诺(苏州)生物科技有限公司 一株产2’-岩藻糖基乳糖的工程菌及其构建方法和应用
CN116042682B (zh) * 2022-12-22 2024-01-23 芝诺(苏州)生物科技有限公司 一株产2’-岩藻糖基乳糖的工程菌及其构建方法和应用
CN116200360A (zh) * 2023-01-30 2023-06-02 芝诺(苏州)生物科技有限公司 一种futCB突变体及生物合成2’-岩藻糖基乳糖的方法
CN116200360B (zh) * 2023-01-30 2023-09-15 芝诺(苏州)生物科技有限公司 一种futCB突变体及生物合成2’-岩藻糖基乳糖的方法

Also Published As

Publication number Publication date
CN111471606B (zh) 2022-03-08

Similar Documents

Publication Publication Date Title
CN111471606B (zh) 一株优化的高产岩藻糖基乳糖的酿酒酵母菌株及其应用
CN111471605B (zh) 一株高产岩藻糖基乳糖的酿酒酵母工程菌株及其应用
US20210198711A1 (en) Production of steviol glycosides in recombinant hosts
KR101983115B1 (ko) 사프란 화합물의 재조합 생성을 위한 방법 및 물질
KR102281806B1 (ko) 3-hp를 생산할 수 있는 재조합 효모 및 이를 이용한 3-hp의 제조방법
AU2021221448B2 (en) Modified plant
KR102491060B1 (ko) (r)-레티큘린 및 그 전구체를 제조하기 위한 조성물 및 방법
Tabuchi et al. TheSchizosaccharomyces pombe gms1+ gene encodes an UDP-galactose transporter homologue required for protein galactosylation
KR20220035247A (ko) 숙주 세포에서 푸코실락토스의 제조
WO2018211032A1 (en) Production of steviol glycosides in recombinant hosts
CN111542610A (zh) 精确基因组编辑的新策略
WO2023184822A1 (zh) 酶共表达系统及其在合成唾液酸的应用
KR20210097723A (ko) 발효에 의한 1,5-디아미노펜탄의 생산을 위한 조작된 생합성 경로
TW202214841A (zh) 用於藉由醱酵生產4-胺基苯乙胺之工程化生物合成途徑
CN109136119B (zh) 微生物及其用途
KR20200134333A (ko) 발효에 의한 히스타민 생산을 위해 조작된 생합성 경로
CN114277046A (zh) 一种合成四氢嘧啶的三基因串联表达载体及应用
CN115335514A (zh) 罗汉果甙的生物合成
CN109136120B (zh) 微生物及其用途
CN113249240B (zh) 一种高产羟基酪醇的酿酒酵母及其构建方法
CN115873836A (zh) 一种橙花叔醇合成酶及应用
CN113549560B (zh) 一种用于糖蛋白制备的工程化酵母构建方法及其菌株
CN116917485A (zh) 表达岩藻糖基转移酶的重组微生物和使用其生产2’-岩藻糖基乳糖的方法
CN114634883B (zh) 产2′-岩藻糖基乳糖的重组工程菌及其构建方法与应用
JP2767401B2 (ja) 酵母のマンノース−1−リン酸転移酵素遺伝子およびこれを利用するマンノース−1−リン酸含有酸性糖鎖の製造方法

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant