CN110506120A - 用于生产化合物的组合物和方法 - Google Patents
用于生产化合物的组合物和方法 Download PDFInfo
- Publication number
- CN110506120A CN110506120A CN201780081023.1A CN201780081023A CN110506120A CN 110506120 A CN110506120 A CN 110506120A CN 201780081023 A CN201780081023 A CN 201780081023A CN 110506120 A CN110506120 A CN 110506120A
- Authority
- CN
- China
- Prior art keywords
- polyketide synthase
- nucleic acid
- seq
- structural domain
- domain
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/44—Preparation of O-glycosides, e.g. glucosides
- C12P19/60—Preparation of O-glycosides, e.g. glucosides having an oxygen of the saccharide radical directly bound to a non-saccharide heterocyclic ring or a condensed ring system containing a non-saccharide heterocyclic ring, e.g. coumermycin, novobiocin
- C12P19/62—Preparation of O-glycosides, e.g. glucosides having an oxygen of the saccharide radical directly bound to a non-saccharide heterocyclic ring or a condensed ring system containing a non-saccharide heterocyclic ring, e.g. coumermycin, novobiocin the hetero ring having eight or more ring members and only oxygen as ring hetero atoms, e.g. erythromycin, spiramycin, nystatin
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/52—Genes encoding for enzymes or proenzymes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/74—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/1025—Acyltransferases (2.3)
- C12N9/1029—Acyltransferases (2.3) transferring groups other than amino-acyl groups (2.3.1)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/18—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
- C12P17/188—Heterocyclic compound containing in the condensed system at least one hetero ring having nitrogen atoms and oxygen atoms as the only ring heteroatoms
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/02—Libraries contained in or displayed by microorganisms, e.g. bacteria or animal cells; Libraries contained in or displayed by vectors, e.g. plasmids; Libraries containing only microorganisms or vectors
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Biomedical Technology (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- General Chemical & Material Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Medicinal Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Plant Pathology (AREA)
- Enzymes And Modification Thereof (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Peptides Or Proteins (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201662414435P | 2016-10-28 | 2016-10-28 | |
| US62/414435 | 2016-10-28 | ||
| PCT/US2017/058805 WO2018081592A2 (en) | 2016-10-28 | 2017-10-27 | Compositions and methods for the production of compounds |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CN110506120A true CN110506120A (zh) | 2019-11-26 |
Family
ID=62024069
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CN201780081023.1A Pending CN110506120A (zh) | 2016-10-28 | 2017-10-27 | 用于生产化合物的组合物和方法 |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US11479797B2 (enExample) |
| EP (1) | EP3532633A4 (enExample) |
| JP (1) | JP2020501519A (enExample) |
| KR (1) | KR20190099396A (enExample) |
| CN (1) | CN110506120A (enExample) |
| AU (1) | AU2017350900A1 (enExample) |
| CA (1) | CA3042231A1 (enExample) |
| WO (1) | WO2018081592A2 (enExample) |
Families Citing this family (14)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US9428845B1 (en) | 2010-12-28 | 2016-08-30 | Warp Drive Bio, Inc. | Identifying new therapeutic agents |
| EP3247378B8 (en) | 2015-01-09 | 2023-08-23 | Revolution Medicines, Inc. | Macrocyclic compounds that participate in cooperative binding and medical uses thereof |
| WO2017059207A1 (en) | 2015-10-01 | 2017-04-06 | Warp Drive Bio, Inc. | Methods and reagents for analyzing protein-protein interfaces |
| US10907188B2 (en) | 2016-04-12 | 2021-02-02 | Ginkgo Bioworks, Inc. | Compositions and methods for the production of compounds |
| JP2020501519A (ja) | 2016-10-28 | 2020-01-23 | ギンゴー バイオワークス, インコーポレイテッド | 化合物の生産のための組成物および方法 |
| US11608346B2 (en) | 2019-11-04 | 2023-03-21 | Revolution Medicines, Inc. | Ras inhibitors |
| US11566007B2 (en) | 2019-11-04 | 2023-01-31 | Revolution Medicines, Inc. | Ras inhibitors |
| EP4054720A1 (en) | 2019-11-04 | 2022-09-14 | Revolution Medicines, Inc. | Ras inhibitors |
| CR20230165A (es) | 2020-09-15 | 2023-06-02 | Revolution Medicines Inc | Derivados indólicos como inhibidores de ras en el tratamiento del cáncer |
| US10947552B1 (en) | 2020-09-30 | 2021-03-16 | Alpine Roads, Inc. | Recombinant fusion proteins for producing milk proteins in plants |
| WO2022072718A1 (en) | 2020-09-30 | 2022-04-07 | Nobell Foods, Inc. | Recombinant milk proteins and food compositions comprising the same |
| US10894812B1 (en) | 2020-09-30 | 2021-01-19 | Alpine Roads, Inc. | Recombinant milk proteins |
| CR20230558A (es) | 2021-05-05 | 2024-01-24 | Revolution Medicines Inc | Inhibidores de ras para el tratamiento del cáncer |
| AR127308A1 (es) | 2021-10-08 | 2024-01-10 | Revolution Medicines Inc | Inhibidores ras |
Citations (5)
| Publication number | Priority date | Publication date | Assignee | Title |
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| JPH09224687A (ja) * | 1996-02-22 | 1997-09-02 | Eli Lilly & Co | ポリケチドシンターゼ遺伝子 |
| US20030153053A1 (en) * | 2001-08-06 | 2003-08-14 | Ralph Reid | Methods for altering polyketide synthase genes |
| EP1477563A2 (en) * | 2003-05-16 | 2004-11-17 | Wyeth | Cloning genes from streptomyces cyaneogriseus subsp.noncyanogenus for biosynthesis of antibiotics and methods of use |
| US20080241889A1 (en) * | 2000-12-11 | 2008-10-02 | Invitrogen Corporation | Methods and compositions for synthesis of nucleic acid molecules using multiple recognition sites |
| CN102015756A (zh) * | 2008-03-20 | 2011-04-13 | 辛文特公司 | Nrps-pks基因簇及其操纵和应用 |
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| JPH074269B2 (ja) | 1984-10-04 | 1995-01-25 | サンド・アクチエンゲゼルシャフト | シクロスポリン類に対するモノクロ−ナル抗体 |
| EP0620230A1 (en) | 1989-04-15 | 1994-10-19 | Nippon Chemiphar Co., Ltd. | Peptides and antidementia agents containing the same |
| ES2089723T3 (es) | 1992-03-27 | 1996-10-01 | American Home Prod | 29-demetoxirapamicina para inducir la inmunodepresion. |
| JPH09505983A (ja) | 1993-09-20 | 1997-06-17 | ザ リーランド スタンフォード ジュニア ユニバーシティ | 新規ポリケチドの組換え産生 |
| IL112873A (en) | 1994-03-08 | 2005-03-20 | Wyeth Corp | Rapamycin-fkbp12 binding proteins, their isolation and their use |
| GB9410142D0 (en) | 1994-05-20 | 1994-07-06 | Univ Warwick | Carbapenems |
| GB9524630D0 (en) | 1994-12-24 | 1996-01-31 | Zeneca Ltd | Chemical compounds |
| US6124453A (en) | 1995-07-04 | 2000-09-26 | Novartis Ag | Macrolides |
| CN1179046C (zh) | 1996-07-05 | 2004-12-08 | 拜奥蒂卡技术有限公司 | 新型红霉素、其制备方法、用途和含其的药物组合物 |
| SE9603465D0 (sv) | 1996-09-23 | 1996-09-23 | Astra Ab | New compounds |
| US6902913B2 (en) | 1997-04-30 | 2005-06-07 | Kosan Biosciences, Inc. | Recombinant narbonolide polyketide synthase |
| US6153383A (en) | 1997-12-09 | 2000-11-28 | Verdine; Gregory L. | Synthetic transcriptional modulators and uses thereof |
| EP1079859B1 (en) | 1998-05-22 | 2010-07-14 | The Board Of Trustees Of The Leland Stanford Junior University | Bifunctional molecules and therapies based thereon |
| AU773517B2 (en) | 1998-10-02 | 2004-05-27 | Kosan Biosciences, Inc. | Polyketide synthase enzymes and recombinant DNA constructs therefor |
| US6686454B1 (en) | 1998-10-09 | 2004-02-03 | Isotechnika, Inc. | Antibodies to specific regions of cyclosporine related compounds |
| AU2876300A (en) | 1999-02-09 | 2000-08-29 | Board Of Trustees Of The Leland Stanford Junior University | Methods to mediate polyketide synthase module effectiveness |
| GB9927191D0 (en) | 1999-11-17 | 2000-01-12 | Angeletti P Ist Richerche Bio | Methods and means for regulation of gene expression |
| US7220552B1 (en) | 1999-11-19 | 2007-05-22 | The Board Of Trustees Of The Leland Stanford Junior University | Bifunctional molecules and their use in the disruption of protein-protein interactions |
| WO2001036612A1 (en) | 1999-11-19 | 2001-05-25 | The Board Of Trustees Of The Leland Stanford Junior University | Bifunctional molecules and their use in the disruption of protein-protein interactions |
| WO2001059126A2 (en) * | 2000-02-08 | 2001-08-16 | Norges Teknisk Naturvitenskapelige Universitet | Gene cluster encoding a nystatin polyketide synthase and its manipulation and utility |
| CA2380935A1 (en) | 2000-05-23 | 2001-11-29 | Vertex Pharmaceuticals Incorporated | Caspase inhibitors and uses thereof |
| US6809077B2 (en) | 2001-10-12 | 2004-10-26 | Enanta Pharmaceuticals, Inc. | Cyclosporin analogs for the treatment of autoimmune diseases |
| US6987090B2 (en) | 2002-05-09 | 2006-01-17 | Lg Household & Health Care Ltd. | Use of 3-position cyclosporin derivatives for hair growth |
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| US20070203168A1 (en) | 2006-02-28 | 2007-08-30 | Zhao Jonathon Z | Isomers of rapamycin and 42-Epi-rapamycin, methods of making and using the same |
| KR100945483B1 (ko) | 2007-10-25 | 2010-03-05 | 이화여자대학교 산학협력단 | pikD 조절유전자의 발현벡터를 이용한 스트렙토미세스베네주엘라에(Streptomycesvenezuelae)에서폴리케타이드(polyketide)의 생산성 증가방법 |
| US20110171219A1 (en) | 2008-09-19 | 2011-07-14 | Fahar Merchant | Treating cancer stem cells using targeted cargo proteins |
| CN102224242B (zh) | 2008-09-24 | 2014-09-24 | 中国科学院上海有机化学研究所 | 新基因簇 |
| EP2391376A4 (en) | 2009-01-30 | 2012-08-01 | Enanta Pharm Inc | ANALOGUES OF CYCLOSPORIN FOR PREVENTING OR TREATING HEPATITIS C INFECTION |
| CA2768299C (en) | 2009-07-13 | 2018-03-20 | President And Fellows Of Harvard College | Bifunctional stapled polypeptides and uses thereof |
| US8664186B2 (en) | 2009-07-24 | 2014-03-04 | Universite De Lorraine | Stambomycin and derivatives, their production and their uses as drugs |
| AU2010298338A1 (en) | 2009-09-22 | 2012-04-12 | Aileron Therapeutics, Inc. | Peptidomimetic macrocycles |
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| CN106084002A (zh) | 2010-11-30 | 2016-11-09 | 约翰·霍普金斯大学 | 杂交环状文库和其筛选 |
| US9428845B1 (en) | 2010-12-28 | 2016-08-30 | Warp Drive Bio, Inc. | Identifying new therapeutic agents |
| WO2012174489A2 (en) | 2011-06-15 | 2012-12-20 | The Ohio State University | Small molecule composite surfaces as inhibitors of protein-protein interactions |
| PT3210627T (pt) | 2012-07-12 | 2023-03-23 | Hangzhou Dac Biotech Co Ltd | Conjugados de moléculas de ligação celular com agentes citotóxicos |
| WO2014080251A1 (en) | 2012-11-24 | 2014-05-30 | Hangzhou Dac Biotech Co., Ltd. | Hydrophilic linkers and their uses for conjugation of drugs to cell binding molecules |
| EP2806274A1 (en) | 2013-05-24 | 2014-11-26 | AIT Austrian Institute of Technology GmbH | Lung cancer diagnostic method and means |
| US10233431B2 (en) | 2014-02-26 | 2019-03-19 | The Regents Of The University Of California | Producing 3-hydroxycarboxylic acid and ketone using polyketide synthases |
| WO2015132784A1 (en) | 2014-03-03 | 2015-09-11 | Yissum Research Development Company Of The Hebrew University Of Jerusalem Ltd. | Method and device for detection of pseudomonas aeruginosa |
| JP2020501519A (ja) * | 2016-10-28 | 2020-01-23 | ギンゴー バイオワークス, インコーポレイテッド | 化合物の生産のための組成物および方法 |
-
2017
- 2017-10-27 JP JP2019523736A patent/JP2020501519A/ja active Pending
- 2017-10-27 AU AU2017350900A patent/AU2017350900A1/en not_active Abandoned
- 2017-10-27 US US16/345,445 patent/US11479797B2/en active Active
- 2017-10-27 EP EP17865512.2A patent/EP3532633A4/en not_active Withdrawn
- 2017-10-27 CN CN201780081023.1A patent/CN110506120A/zh active Pending
- 2017-10-27 WO PCT/US2017/058805 patent/WO2018081592A2/en not_active Ceased
- 2017-10-27 KR KR1020197015328A patent/KR20190099396A/ko not_active Ceased
- 2017-10-27 CA CA3042231A patent/CA3042231A1/en active Pending
Patent Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JPH09224687A (ja) * | 1996-02-22 | 1997-09-02 | Eli Lilly & Co | ポリケチドシンターゼ遺伝子 |
| US20080241889A1 (en) * | 2000-12-11 | 2008-10-02 | Invitrogen Corporation | Methods and compositions for synthesis of nucleic acid molecules using multiple recognition sites |
| US20030153053A1 (en) * | 2001-08-06 | 2003-08-14 | Ralph Reid | Methods for altering polyketide synthase genes |
| EP1477563A2 (en) * | 2003-05-16 | 2004-11-17 | Wyeth | Cloning genes from streptomyces cyaneogriseus subsp.noncyanogenus for biosynthesis of antibiotics and methods of use |
| US7396660B2 (en) * | 2003-05-16 | 2008-07-08 | Wyeth | Cloning genes from Streptomyces cyaneogriseus subsp. Noncyanogenus for biosynthesis of antibiotics and methods of use |
| CN102015756A (zh) * | 2008-03-20 | 2011-04-13 | 辛文特公司 | Nrps-pks基因簇及其操纵和应用 |
| US20110117606A1 (en) * | 2008-03-20 | 2011-05-19 | Joergensen Hanne | NRPS-PKS Gene Cluster and its Manipulation and Utility |
Non-Patent Citations (6)
| Title |
|---|
| BARRY MURPHY 等: "Isolation and characterisation of amphotericin B analogues and truncated polyketide intermediates produced by genetic engineering of Streptomyces nodosus", 《ORGANIC & BIOMOLECULAR CHEMISTRY》 * |
| LI TANG 等: "Generation of New Epothilones by Genetic Engineering of a Polyketide Synthase in Myxococcus xanthus", 《J. ANTIBIOT.》 * |
| PATRICK POWER 等: "Engineered Synthesis of 7-Oxo- and 15-Deoxy-15-OxoAmphotericins: Insights into Structure-Activity Relationships in Polyene Antibiotics", 《CHEMISTRY & BIOLOGY》 * |
| RALPH REID 等: "A Model of Structure and Catalysis for Ketoreductase Domains in Modular Polyketide Synthases", 《BIOCHEMISTRY》 * |
| 张惠展: "《基因工程》", 31 August 2005, 华东理工大学出版社 * |
| 焦豫良 等: "PKSI-AT 结构域及在组合生物合成研究中的应用", 《中国生物化学与分子生物学报 》 * |
Also Published As
| Publication number | Publication date |
|---|---|
| US20190249213A1 (en) | 2019-08-15 |
| WO2018081592A2 (en) | 2018-05-03 |
| US11479797B2 (en) | 2022-10-25 |
| EP3532633A2 (en) | 2019-09-04 |
| KR20190099396A (ko) | 2019-08-27 |
| CA3042231A1 (en) | 2018-05-03 |
| JP2020501519A (ja) | 2020-01-23 |
| AU2017350900A1 (en) | 2019-06-13 |
| EP3532633A4 (en) | 2020-09-09 |
| WO2018081592A3 (en) | 2018-10-04 |
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| PB01 | Publication | ||
| PB01 | Publication | ||
| SE01 | Entry into force of request for substantive examination | ||
| SE01 | Entry into force of request for substantive examination | ||
| WD01 | Invention patent application deemed withdrawn after publication | ||
| WD01 | Invention patent application deemed withdrawn after publication |
Application publication date: 20191126 |