CN110506120A - 用于生产化合物的组合物和方法 - Google Patents

用于生产化合物的组合物和方法 Download PDF

Info

Publication number
CN110506120A
CN110506120A CN201780081023.1A CN201780081023A CN110506120A CN 110506120 A CN110506120 A CN 110506120A CN 201780081023 A CN201780081023 A CN 201780081023A CN 110506120 A CN110506120 A CN 110506120A
Authority
CN
China
Prior art keywords
polyketide synthase
nucleic acid
seq
structural domain
domain
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CN201780081023.1A
Other languages
English (en)
Chinese (zh)
Inventor
D.C.格雷
B.R.鲍曼
G.L.韦尔丁
M.E.索瓦
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Gingko Bioworks Inc
Original Assignee
Gingko Bioworks Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gingko Bioworks Inc filed Critical Gingko Bioworks Inc
Publication of CN110506120A publication Critical patent/CN110506120A/zh
Pending legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00Preparation of compounds containing saccharide radicals
    • C12P19/44Preparation of O-glycosides, e.g. glucosides
    • C12P19/60Preparation of O-glycosides, e.g. glucosides having an oxygen of the saccharide radical directly bound to a non-saccharide heterocyclic ring or a condensed ring system containing a non-saccharide heterocyclic ring, e.g. coumermycin, novobiocin
    • C12P19/62Preparation of O-glycosides, e.g. glucosides having an oxygen of the saccharide radical directly bound to a non-saccharide heterocyclic ring or a condensed ring system containing a non-saccharide heterocyclic ring, e.g. coumermycin, novobiocin the hetero ring having eight or more ring members and only oxygen as ring hetero atoms, e.g. erythromycin, spiramycin, nystatin
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/52Genes encoding for enzymes or proenzymes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1025Acyltransferases (2.3)
    • C12N9/1029Acyltransferases (2.3) transferring groups other than amino-acyl groups (2.3.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/18Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
    • C12P17/188Heterocyclic compound containing in the condensed system at least one hetero ring having nitrogen atoms and oxygen atoms as the only ring heteroatoms
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00Libraries per se, e.g. arrays, mixtures
    • C40B40/02Libraries contained in or displayed by microorganisms, e.g. bacteria or animal cells; Libraries contained in or displayed by vectors, e.g. plasmids; Libraries containing only microorganisms or vectors
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Biomedical Technology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Medicinal Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Plant Pathology (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Peptides Or Proteins (AREA)
CN201780081023.1A 2016-10-28 2017-10-27 用于生产化合物的组合物和方法 Pending CN110506120A (zh)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201662414435P 2016-10-28 2016-10-28
US62/414435 2016-10-28
PCT/US2017/058805 WO2018081592A2 (en) 2016-10-28 2017-10-27 Compositions and methods for the production of compounds

Publications (1)

Publication Number Publication Date
CN110506120A true CN110506120A (zh) 2019-11-26

Family

ID=62024069

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201780081023.1A Pending CN110506120A (zh) 2016-10-28 2017-10-27 用于生产化合物的组合物和方法

Country Status (8)

Country Link
US (1) US11479797B2 (enExample)
EP (1) EP3532633A4 (enExample)
JP (1) JP2020501519A (enExample)
KR (1) KR20190099396A (enExample)
CN (1) CN110506120A (enExample)
AU (1) AU2017350900A1 (enExample)
CA (1) CA3042231A1 (enExample)
WO (1) WO2018081592A2 (enExample)

Families Citing this family (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9428845B1 (en) 2010-12-28 2016-08-30 Warp Drive Bio, Inc. Identifying new therapeutic agents
EP3247378B8 (en) 2015-01-09 2023-08-23 Revolution Medicines, Inc. Macrocyclic compounds that participate in cooperative binding and medical uses thereof
WO2017059207A1 (en) 2015-10-01 2017-04-06 Warp Drive Bio, Inc. Methods and reagents for analyzing protein-protein interfaces
US10907188B2 (en) 2016-04-12 2021-02-02 Ginkgo Bioworks, Inc. Compositions and methods for the production of compounds
JP2020501519A (ja) 2016-10-28 2020-01-23 ギンゴー バイオワークス, インコーポレイテッド 化合物の生産のための組成物および方法
US11608346B2 (en) 2019-11-04 2023-03-21 Revolution Medicines, Inc. Ras inhibitors
US11566007B2 (en) 2019-11-04 2023-01-31 Revolution Medicines, Inc. Ras inhibitors
EP4054720A1 (en) 2019-11-04 2022-09-14 Revolution Medicines, Inc. Ras inhibitors
CR20230165A (es) 2020-09-15 2023-06-02 Revolution Medicines Inc Derivados indólicos como inhibidores de ras en el tratamiento del cáncer
US10947552B1 (en) 2020-09-30 2021-03-16 Alpine Roads, Inc. Recombinant fusion proteins for producing milk proteins in plants
WO2022072718A1 (en) 2020-09-30 2022-04-07 Nobell Foods, Inc. Recombinant milk proteins and food compositions comprising the same
US10894812B1 (en) 2020-09-30 2021-01-19 Alpine Roads, Inc. Recombinant milk proteins
CR20230558A (es) 2021-05-05 2024-01-24 Revolution Medicines Inc Inhibidores de ras para el tratamiento del cáncer
AR127308A1 (es) 2021-10-08 2024-01-10 Revolution Medicines Inc Inhibidores ras

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH09224687A (ja) * 1996-02-22 1997-09-02 Eli Lilly & Co ポリケチドシンターゼ遺伝子
US20030153053A1 (en) * 2001-08-06 2003-08-14 Ralph Reid Methods for altering polyketide synthase genes
EP1477563A2 (en) * 2003-05-16 2004-11-17 Wyeth Cloning genes from streptomyces cyaneogriseus subsp.noncyanogenus for biosynthesis of antibiotics and methods of use
US20080241889A1 (en) * 2000-12-11 2008-10-02 Invitrogen Corporation Methods and compositions for synthesis of nucleic acid molecules using multiple recognition sites
CN102015756A (zh) * 2008-03-20 2011-04-13 辛文特公司 Nrps-pks基因簇及其操纵和应用

Family Cites Families (42)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH074269B2 (ja) 1984-10-04 1995-01-25 サンド・アクチエンゲゼルシャフト シクロスポリン類に対するモノクロ−ナル抗体
EP0620230A1 (en) 1989-04-15 1994-10-19 Nippon Chemiphar Co., Ltd. Peptides and antidementia agents containing the same
ES2089723T3 (es) 1992-03-27 1996-10-01 American Home Prod 29-demetoxirapamicina para inducir la inmunodepresion.
JPH09505983A (ja) 1993-09-20 1997-06-17 ザ リーランド スタンフォード ジュニア ユニバーシティ 新規ポリケチドの組換え産生
IL112873A (en) 1994-03-08 2005-03-20 Wyeth Corp Rapamycin-fkbp12 binding proteins, their isolation and their use
GB9410142D0 (en) 1994-05-20 1994-07-06 Univ Warwick Carbapenems
GB9524630D0 (en) 1994-12-24 1996-01-31 Zeneca Ltd Chemical compounds
US6124453A (en) 1995-07-04 2000-09-26 Novartis Ag Macrolides
CN1179046C (zh) 1996-07-05 2004-12-08 拜奥蒂卡技术有限公司 新型红霉素、其制备方法、用途和含其的药物组合物
SE9603465D0 (sv) 1996-09-23 1996-09-23 Astra Ab New compounds
US6902913B2 (en) 1997-04-30 2005-06-07 Kosan Biosciences, Inc. Recombinant narbonolide polyketide synthase
US6153383A (en) 1997-12-09 2000-11-28 Verdine; Gregory L. Synthetic transcriptional modulators and uses thereof
EP1079859B1 (en) 1998-05-22 2010-07-14 The Board Of Trustees Of The Leland Stanford Junior University Bifunctional molecules and therapies based thereon
AU773517B2 (en) 1998-10-02 2004-05-27 Kosan Biosciences, Inc. Polyketide synthase enzymes and recombinant DNA constructs therefor
US6686454B1 (en) 1998-10-09 2004-02-03 Isotechnika, Inc. Antibodies to specific regions of cyclosporine related compounds
AU2876300A (en) 1999-02-09 2000-08-29 Board Of Trustees Of The Leland Stanford Junior University Methods to mediate polyketide synthase module effectiveness
GB9927191D0 (en) 1999-11-17 2000-01-12 Angeletti P Ist Richerche Bio Methods and means for regulation of gene expression
US7220552B1 (en) 1999-11-19 2007-05-22 The Board Of Trustees Of The Leland Stanford Junior University Bifunctional molecules and their use in the disruption of protein-protein interactions
WO2001036612A1 (en) 1999-11-19 2001-05-25 The Board Of Trustees Of The Leland Stanford Junior University Bifunctional molecules and their use in the disruption of protein-protein interactions
WO2001059126A2 (en) * 2000-02-08 2001-08-16 Norges Teknisk Naturvitenskapelige Universitet Gene cluster encoding a nystatin polyketide synthase and its manipulation and utility
CA2380935A1 (en) 2000-05-23 2001-11-29 Vertex Pharmaceuticals Incorporated Caspase inhibitors and uses thereof
US6809077B2 (en) 2001-10-12 2004-10-26 Enanta Pharmaceuticals, Inc. Cyclosporin analogs for the treatment of autoimmune diseases
US6987090B2 (en) 2002-05-09 2006-01-17 Lg Household & Health Care Ltd. Use of 3-position cyclosporin derivatives for hair growth
CA2643826A1 (en) 2006-02-27 2008-06-12 Paul A. Wender Compositions and methods for transport of molecules with enhanced release properties across biological barriers
US20070203168A1 (en) 2006-02-28 2007-08-30 Zhao Jonathon Z Isomers of rapamycin and 42-Epi-rapamycin, methods of making and using the same
KR100945483B1 (ko) 2007-10-25 2010-03-05 이화여자대학교 산학협력단 pikD 조절유전자의 발현벡터를 이용한 스트렙토미세스베네주엘라에(Streptomycesvenezuelae)에서폴리케타이드(polyketide)의 생산성 증가방법
US20110171219A1 (en) 2008-09-19 2011-07-14 Fahar Merchant Treating cancer stem cells using targeted cargo proteins
CN102224242B (zh) 2008-09-24 2014-09-24 中国科学院上海有机化学研究所 新基因簇
EP2391376A4 (en) 2009-01-30 2012-08-01 Enanta Pharm Inc ANALOGUES OF CYCLOSPORIN FOR PREVENTING OR TREATING HEPATITIS C INFECTION
CA2768299C (en) 2009-07-13 2018-03-20 President And Fellows Of Harvard College Bifunctional stapled polypeptides and uses thereof
US8664186B2 (en) 2009-07-24 2014-03-04 Universite De Lorraine Stambomycin and derivatives, their production and their uses as drugs
AU2010298338A1 (en) 2009-09-22 2012-04-12 Aileron Therapeutics, Inc. Peptidomimetic macrocycles
WO2011049157A1 (ja) 2009-10-22 2011-04-28 ペプチドリーム株式会社 ペプチド翻訳合成におけるrapidディスプレイ法
CN106084002A (zh) 2010-11-30 2016-11-09 约翰·霍普金斯大学 杂交环状文库和其筛选
US9428845B1 (en) 2010-12-28 2016-08-30 Warp Drive Bio, Inc. Identifying new therapeutic agents
WO2012174489A2 (en) 2011-06-15 2012-12-20 The Ohio State University Small molecule composite surfaces as inhibitors of protein-protein interactions
PT3210627T (pt) 2012-07-12 2023-03-23 Hangzhou Dac Biotech Co Ltd Conjugados de moléculas de ligação celular com agentes citotóxicos
WO2014080251A1 (en) 2012-11-24 2014-05-30 Hangzhou Dac Biotech Co., Ltd. Hydrophilic linkers and their uses for conjugation of drugs to cell binding molecules
EP2806274A1 (en) 2013-05-24 2014-11-26 AIT Austrian Institute of Technology GmbH Lung cancer diagnostic method and means
US10233431B2 (en) 2014-02-26 2019-03-19 The Regents Of The University Of California Producing 3-hydroxycarboxylic acid and ketone using polyketide synthases
WO2015132784A1 (en) 2014-03-03 2015-09-11 Yissum Research Development Company Of The Hebrew University Of Jerusalem Ltd. Method and device for detection of pseudomonas aeruginosa
JP2020501519A (ja) * 2016-10-28 2020-01-23 ギンゴー バイオワークス, インコーポレイテッド 化合物の生産のための組成物および方法

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH09224687A (ja) * 1996-02-22 1997-09-02 Eli Lilly & Co ポリケチドシンターゼ遺伝子
US20080241889A1 (en) * 2000-12-11 2008-10-02 Invitrogen Corporation Methods and compositions for synthesis of nucleic acid molecules using multiple recognition sites
US20030153053A1 (en) * 2001-08-06 2003-08-14 Ralph Reid Methods for altering polyketide synthase genes
EP1477563A2 (en) * 2003-05-16 2004-11-17 Wyeth Cloning genes from streptomyces cyaneogriseus subsp.noncyanogenus for biosynthesis of antibiotics and methods of use
US7396660B2 (en) * 2003-05-16 2008-07-08 Wyeth Cloning genes from Streptomyces cyaneogriseus subsp. Noncyanogenus for biosynthesis of antibiotics and methods of use
CN102015756A (zh) * 2008-03-20 2011-04-13 辛文特公司 Nrps-pks基因簇及其操纵和应用
US20110117606A1 (en) * 2008-03-20 2011-05-19 Joergensen Hanne NRPS-PKS Gene Cluster and its Manipulation and Utility

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
BARRY MURPHY 等: "Isolation and characterisation of amphotericin B analogues and truncated polyketide intermediates produced by genetic engineering of Streptomyces nodosus", 《ORGANIC & BIOMOLECULAR CHEMISTRY》 *
LI TANG 等: "Generation of New Epothilones by Genetic Engineering of a Polyketide Synthase in Myxococcus xanthus", 《J. ANTIBIOT.》 *
PATRICK POWER 等: "Engineered Synthesis of 7-Oxo- and 15-Deoxy-15-OxoAmphotericins: Insights into Structure-Activity Relationships in Polyene Antibiotics", 《CHEMISTRY & BIOLOGY》 *
RALPH REID 等: "A Model of Structure and Catalysis for Ketoreductase Domains in Modular Polyketide Synthases", 《BIOCHEMISTRY》 *
张惠展: "《基因工程》", 31 August 2005, 华东理工大学出版社 *
焦豫良 等: "PKSI-AT 结构域及在组合生物合成研究中的应用", 《中国生物化学与分子生物学报 》 *

Also Published As

Publication number Publication date
US20190249213A1 (en) 2019-08-15
WO2018081592A2 (en) 2018-05-03
US11479797B2 (en) 2022-10-25
EP3532633A2 (en) 2019-09-04
KR20190099396A (ko) 2019-08-27
CA3042231A1 (en) 2018-05-03
JP2020501519A (ja) 2020-01-23
AU2017350900A1 (en) 2019-06-13
EP3532633A4 (en) 2020-09-09
WO2018081592A3 (en) 2018-10-04

Similar Documents

Publication Publication Date Title
US11479797B2 (en) Compositions and methods for the production of compounds
Ji et al. Library of synthetic Streptomyces regulatory sequences for use in promoter engineering of natural product biosynthetic gene clusters
WO2000026349A9 (en) Recombinant oleandolide polyketide synthase
KR102561694B1 (ko) 화합물의 생산을 위한 조성물 및 방법
US12404524B2 (en) Expression vector
CA2332129A1 (en) Dna encoding methymycin and pikromycin
Suwa et al. Identification of two polyketide synthase gene clusters on the linear plasmid pSLA2-L in Streptomyces rochei
CN101363022B (zh) 替曲卡星a的生物合成基因簇及其应用
Emmerich et al. Evidence for a functional similarity between the two-component regulatory systems RegSR, ActSR, and RegBA (PrrBA) in α-Proteobacteria
US6177262B1 (en) Recombinant host cells for the production of polyketides
ES2921056T3 (es) Composiciones y métodos para la producción de compuestos
US20060269528A1 (en) Production detection and use of transformant cells
Baltz et al. Microbial genome mining for natural product drug discovery
KR100209842B1 (ko) 스트렙토마이세스 아베르미틸리스에서 단리된, 분지쇄 알파-케토산 데하이드로지네이즈 복합체를 암호화하는 유전자
Tomich Streptomyces cloning: possible construction of novel compounds and regulation of antibiotic biosynthetic genes
US20060141583A1 (en) Elaiophylin biosynthetic gene cluster
BRPI0314543B1 (pt) células hospedeiras, dna recombinante, utilização dos mesmos, processos de produção de um polipeptídeo implicado na biossíntese das espiramicinas, de produção de macrolídeos e de produção de espiramicina(s), e micro-organismo transgênico mutante produtor de macrolídeo
Uchida et al. Identification of genes coding enzymes for ascomycin tetra-hydropyranose ring formation
August et al. Molecular Biological Aspects of Antibiotics Biosynthesis
WO2001032845A2 (en) Methods for the preparation of (lipo)peptide synthetases and (lipo)peptides produced therewith
Xue Molecular genetics and biochemistry of methymycin and pikromycin biosynthesis in streptomyces venezuelae
WO2003099993A2 (en) Dna sequence confering early and increased secondary metabolite production in streptomyces and method of use
MXPA98004995A (en) Genes of sugar biosynthesis associated with policet

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
WD01 Invention patent application deemed withdrawn after publication
WD01 Invention patent application deemed withdrawn after publication

Application publication date: 20191126