CN110229919A - For detecting the composition, kit and method of Mycoplasma bovis - Google Patents

For detecting the composition, kit and method of Mycoplasma bovis Download PDF

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CN110229919A
CN110229919A CN201910560295.0A CN201910560295A CN110229919A CN 110229919 A CN110229919 A CN 110229919A CN 201910560295 A CN201910560295 A CN 201910560295A CN 110229919 A CN110229919 A CN 110229919A
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mycoplasma bovis
oligonucleotides
detecting
composition
gene
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CN110229919B (en
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李敏
郝秀静
韩杨
马春骥
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Ningxia University
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    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
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Abstract

The present invention discloses the composition, kit and method for detecting Mycoplasma bovis.The present invention completes the accurate detection of Mycoplasma bovis by designing specific primer, the probe of the LppA gene of Mycoplasma bovis, which can accomplish Mycoplasma bovis type strain and the conservative and Mycoplasma bovis in wild strain kind and the specificity between other pathogenic species.The present invention explores optimum reacting time in detection process and optimal reaction temperature, the specificity of detection, sensibility, repeatability and stability, have found optimum reaction condition, establish specificity it is good, sensibility is high and can stablize duplicate Mycoplasma bovis rapid detection method, with easy to operate, it is convenient time saving, without large-scale experimental instrument and equipment, it is very suitable to personnel's operation of no any experiment basis.

Description

For detecting the composition, kit and method of Mycoplasma bovis
Technical field
The present invention relates to field of molecular biotechnology, more particularly to a kind of composition that Mycoplasma bovis quickly detects, examination Agent box and method.
Background technique
Mycoplasma bovis (Mycoplasma bovis, M.bovis) is under the jurisdiction of Prokaryota, Firmicutes, Mollicutes, Mycoplasmas, Mycoplasmataceae, Mycoplasma are a kind of pathogen of main infection bovine respiratory, can persistent infection host, Cause a variety of chronic diseases including ox pneumonia, such as mazoitis, tympanitis, dysgenesia, arthritis, meningitis and angle Film conjunctivitis etc., these diseases are commonly referred to as Mycoplasma bovis related disease (Mycoplasma bovis associated Disease, MbAD).
The method of detection Mycoplasma bovis generally comprises following at present.Cultivation is directly demonstrate,proved existing for detection pathogen According to, be detect M.bovis goldstandard.Once detection, can make a definite diagnosis.General plate method and fast culture can be divided into Method.However due to M.bovis slow growth, from clinical sample for the first time separation generally require 2~4 generation of blind passage could be by micro- Mirror sees bacterium colony on solid medium, needs a few days that can just obtain testing result, and not only recall rate is low, but also there is time-consuming mistake More, intermediate link complexity, condition of culture require the defects of high, bring certain difficulty to being clinically separated for M.bovis, uncomfortable Close clinical quick diagnosis.Serologic detection technology has many advantages, such as that specificity is higher, sensitivity is preferable, quick, easily operated, non- The often quick inspection and large-scale epidemiological survey of suitable clinical sample, but mycoplasma class has common antigen mostly, It is easy to cause the experimental result of false positive.Immunohistochemistry technique is the technology that goalkeeper's histology is combined with immunology, be Histocyte is in situ, is reacted by Ag-Ab specific binding reaction and Histochemical staining, by visible marker pair Corresponding antigens or antibody positioned, qualitative and quantitative detection, but not heavy for the state of an illness or lesions position is selected deviation occur When larger, immunohistochemistry is then difficult to detect the presence of M.bovis.In numerous detection methods, polymerase chain reaction is letter Just and effective detection method.The detection of PCR method is quick, specific and sensibility is high, and detection sample needs not be living body, no By patient immune function, the course of disease, gradient of infection, whether there is or not drug therapy is used and not up to measurable serum levels are influenced, make morning Phase diagnosis and the correct of antibiotic are selected to possibility.The infected patient that early stage and the person that do not generate antibody and antibody have not disappeared has Positive meaning;Help to early diagnose, treat in time, and cross reaction and radioactive pollution is not present, easily standardizes.Though Right PCR method detection is quick, in some sense alternative cultivation, but its hypersensitivity also makes PCR method to experimental situation and instrument Device requirement is relatively high, there is a problem that technical conditions requirement is high, complicated for operation, it is universal to be not easy, general laboratories are difficult to Carry out, and price is also relatively high.
Summary of the invention
To solve at least partly technical problem in the prior art, the present invention provides a kind of quick, specific detection Niu Zhiyuan Composition, kit and the method for body.Specifically, the present invention includes the following contents:
The first aspect of the present invention provides the composition for detecting Mycoplasma bovis comprising can be with Mycoplasma bovis The first oligonucleotides, the second oligonucleotides and the third oligonucleotides of LppA gene recombination.
In the present invention, the length of the first oligonucleotides is generally 35~45nt, preferably 35~40nt.Preferably, first The sequence of oligonucleotides is as shown in SEQ ID No.1.In the present invention, the length of the second oligonucleotides is generally 35~50nt, excellent It is selected as 35~45nt, is marked at 5 ' ends with Biotin.Preferably, the sequence of the second oligonucleotides such as SEQ ID No.2 institute Show, and is marked at 5 ' ends with Biotin.In the present invention, the length of third oligonucleotides is generally 40~55nt, preferably 40~ 50nt.5 ' ends of third oligonucleotides are with detection label, such as FAM fluorophor.3 ' ends of third oligonucleotides are with eventually Only phosphate group.Contain THF cleavage site among the sequence of third oligonucleotides.Preferably, the sequence of third oligonucleotides is such as Shown in SEQ ID No.3, and FAM is had at 5 ' ends, is with termination phosphate group and between 31-32 bit base at 3 ' ends idSp。
In the present invention, the first oligonucleotides can be with the first area selective cross at LppA gene 5 ' end, the second few core The second area selective cross that thuja acid can be held with LppA gene 3 ', third oligonucleotides can be with the third area of LppA gene Field selectivity hybridization.Wherein, the distance between first area and second area be between 50bp~2000bp, preferably 70~ 1000bp, more preferable 100~500bp, such as 100~200bp.Third region is between first area and second area.
The second aspect of the present invention provides the kit for detecting Mycoplasma bovis, and it includes first aspect present invention Composition.
Kit of the invention, which may also include, to be tried in the form of as defined in government organs with regulation manufacture, use or sale diagnosis The relevant points for attention of agent box.The detail specifications of use, storage and troubleshooting can also be provided in kit.Kit may be used also It is optionally located at suitable be preferred in the device of the robot manipulation of high throughput setting.
The component of kit of the present invention can provide as dry powder.When reagent and/or component are provided as dry powder, powder can pass through Suitable solvent is added to restore to the original state.It is expected that the solvent may also be disposed in another container.Container would generally include at least one Kind bottle, test tube, flask, bottle, syringe and/or other container means, wherein optional partially place solvent.Kit may be used also Including the second container means to contain sterile, pharmaceutically acceptable buffer and/or other solvents.
In kit exist be more than a kind of component in the case where, the kit would generally also comprising can it is individually placed in addition Component second, third or other other containers.In addition, can in a reservoir include the combination of each various ingredients.
Kit of the invention may also include holding or maintain the component of DNA, such as the reagent of anti-nucleolysis.Such group Divide to be the nuclease of the protection for example or without RNase or with anti-RNase.Any composition as described herein or reagent can be Component in kit.
The third aspect of the present invention provides the method for detecting Mycoplasma bovis, comprising the following steps:
(1) template of the biological sample from ox is provided;
(2) make template and composition anabolic reaction system, reacted at 34 DEG C~42 DEG C and obtain within 5~20 minutes amplification production Object;
(3) contact amplified production with markd flow measurement chromatograph test strip, when all aobvious at detection line and nature controlling line When showing red, determine the biological sample for positive sample, when be displayed in red at nature controlling line and detection line do not develop the color when, determine The biological sample is negative sample, and test strips failure is proved when nature controlling line is not displayed in red.
Biological sample of the invention refers to body fluid or secretion from ox to be detected.Preferably, biological sample, which is originated from, suffers from There is the ox of related disease.Wherein the example of body fluid includes but is not limited to cyst fluid, nose liquid and joint fluid, lotion etc..Life of the invention Object sample is nose of an ox liquid or joint fluid.Substance as template can be DNA and be also possible to RNA.
Different from general PCR reaction, reaction system of the invention need to carry out in 34 DEG C~42 DEG C of temperature environment, and And the reaction time also only needs 5~20 minutes, preferably 8~15 minutes.Most preferably in embodiment, reaction temperature of the invention is 39 DEG C, the reaction time is 10 minutes.
In an exemplary embodiment, reaction system of the invention (not including template) includes:
Mycoplasma bovis and mycoplasma agalactiae known in the art are in the 16S conventionally used for difference different plant species or strain The whole genome sequence of rRNA, film surface lipoprotein family gene even relevant to mycoplasma pathogenic mechanism or even the two On show great similitude.This brings great challenge for the specific detection of Mycoplasma bovis.The present invention passes through big The analysis and screening of data are measured, therefrom discovery routine and antigenicity associated LppA gene, specific region especially therein can To be used to design the primer target region of recombination polymerization amplified reaction.
Composition of the invention can be special in streptococcus pneumonia, Klebsiella, pseudomonas aeruginosa detection M.bovis out, and these compositions not only can detecte out M.bovis type strain PG45 can also detect that M.bovis open country Raw strain ltb and WWM.When these compositions are used for the detection of Mycoplasma bovis, it can accomplish conservative and ox in Mycoplasma bovis kind Specificity between mycoplasma and other pathogenic species has excellent technical effect.
Further, the present invention also optimizes reaction system, and obtains optimum reacting time and optimal reaction temperature, from And greatly promote the specificity, sensibility, repeatability of detection with stability, foundation obtain specific good, sensibility it is high and Duplicate M.bovis rapid detection method can be stablized.
In addition, the scheme established of the invention method when detecting M.bovis is easy to operate, and it is convenient time saving, without big The experimental instrument and equipment of type is very suitable to personnel's operation of no any experiment basis in field or field quick detection, is worth It promotes the use of.
Detailed description of the invention
Fig. 1: reaction result observation schematic of the invention.
Fig. 2: for the time response gradient map of gene LppA.
Fig. 3: for the thermotonus gradient map of gene LppA.
Fig. 4: for the specific reaction figure of gene LppA.M: molecular mass standard 1: Mycoplasma bovis type strain PG45 2: Mycoplasma bovis wild strain Ltb 3: Mycoplasma bovis wild strain WWM 4: mycoplasma ovine pneumoniae type strain Y98 5: mycoplasma agalactiae Type strain PG2 6: Mycoplasma mycoides subsp.capri type strain PG3 7: mycoplasma capri goat pneumonia subspecies type strain F38 8: Pasteurella 9: staphylococcus aureus 10: Klebsiella 11: streptococcus pneumonia 12: Serratia fonticola 13: salmonella 14: Escherichia coli 15: Pseudomonas aeruginosa 16: no template control.
Fig. 5: for the sensitive response figure of gene LppA.
Fig. 6: for batch interior repeated result figure of gene LppA.
Fig. 7: for gene LppA batch between repeated result figure.
Specific embodiment
The existing various exemplary embodiment that the present invention will be described in detail, the detailed description are not considered as to limit of the invention System, and it is understood as the more detailed description to certain aspects of the invention, characteristic and embodiment.
It should be understood that it is to describe special embodiment that heretofore described term, which is only, it is not intended to limit this hair It is bright.In addition, for the numberical range in the present invention, it is thus understood that specifically disclose the range upper and lower bound and they it Between each median.Median and any other statement value in any statement value or stated ranges or in the range Lesser range is also included in the present invention each of between interior median.These small range of upper and lower bounds can be independent Ground includes or excludes in range.
Unless otherwise stated, all technical and scientific terms used herein has the routine in field of the present invention The normally understood identical meanings of technical staff.Although the present invention only describes preferred method and material, of the invention Implement or also can be used and similar or equivalent any method and material described herein in testing.The institute mentioned in this specification There is document to be incorporated by reference into, to disclosure and description method relevant to the document and/or material.It is incorporated to any When document conflicts, it is subject to the content of this specification.Unless otherwise stated, " % " is the percentage based on weight.
Since M.bovis and mycoplasma agalactiae homology are very high, the similarity of the two 16S rRNA up to 96%, so It is extremely important for the specific detection of M.bovis to find other identifier gene.The present invention is not only examined when selection identifies gene The conservative or homology of gene are considered, more importantly for primer when also contemplating recombination polymerization amplification (RPA) reaction Particular requirement, thus discovery be directed to LppA gene, especially specific region therein design oligonucleotides can quickly, it is special Detection M.bovis.
In addition, though being currently known in Mycoplasma bovis, there are a variety of conservative genes, but for the design of different conservative genes Primer is general PCR primer or the custom primer for LAMP.These primers cannot be used under room temperature of the invention Recombinate polymerization reaction.This is because the amplification carried out at normal temperature, the unwinding of DNA and PCR are entirely different.Tradition estimation is melted Point is not suitable for this system.In addition, traditional PCR primer is due to curtailment, when for recombination polymerization reaction of the invention Efficiency is too low.In addition, current probe is not suitable for reaction of the invention yet, the core of polymerase 5 ' -3 ' has especially been used at present The probe system of phytase activity, such enzymatic activity react at all incompatible with of the invention.In conclusion for of the invention Recombinating polymerization reaction, there is presently no corresponding primer or probe design standards.
Embodiment
The present embodiment is the detection method of the invention based on specific gene LppA.It is specific as follows:
(1) building of detection architecture of the invention:
First detection architecture:
Wherein, Primer free Rehydration buffer is known commercially available product.
Second detection architecture:
Wherein basic mixture includes 5~20ng/ μ L recombinase, the 40~60ng/ μ L polymerase being dissolved in buffer With 500~1000ng/ μ L single strand binding protein;Buffer includes ATP, dNTP, 25~50mM phosphocreatine, 2.7~4.3 μ g/ U creatine kinase, 2~6mM dithiothreitol (DTT) and 2~8% (w/v) polyethylene glycol, and pH is the dense of 6.0~9.0, NaCl or KCl Spend 100nM.
Containing the whole enzymes and reagent needed for reacting in the basic mixture, template and corresponding widow need to only be added wherein Nucleotide.The magnesium acetate (MgOAc) for needing addition such as 2.5 μ l concentration to be 280mM before the reaction is opened into mixture system Dynamic reaction.Amplified production is obtained after reaction, product can be used and be detected with markd flow measurement chromatograph test strip at this time.Work as inspection When surveying product in conjunction with test strips, positive sample can be all displayed in red at detection line and nature controlling line, and negative sample only can be It accuses and is displayed in red at line, test strips failure is proved when nature controlling line is not displayed in red, be invalid testing result.Test paper detection Shown in the result is shown in Figure 1.
(2) exploration of optimum reacting time
PCR can specificity detection M.bovis on the basis of, select gene LppA carry out downstream recombination polymerization amplification Experiment condition, design following oligonucleotides carry out recombination polymerization amplified reaction, thus establish quickly detection M.bovis side Method, specific experiment process are as follows:
The sequence of first oligonucleotides (LppA F) is as follows:
GAAAACATATGATTCATTATGCTAGACACACTTTAAA(SEQ ID No.1)
The sequence of first oligonucleotides (LppA R) is as follows:
(Biotin)TAGTAAGCGAGCCGTAAAACGGATAAACTATAGCTTTG(SEQ ID No.2)
The sequence of first oligonucleotides (LppAP) is as follows:
(FAM)CAAGCATAAATAATCCAAATAAGCTACGTTT/idSp/GTCAGGTATTT GTTTAC(P)(SEQ ID No.3)。
Reaction system:
It is added in reaction tube and mixes well after above-mentioned reaction solution is mixed, the template to be measured and 1.25 μ L of 1 μ L is added MgOAC, brief centrifugation after vortex, is put in 39 DEG C of water-baths, reacts 10min.After reaction, 2 μ L reaction solutions and 100 μ L are taken Detection buffer mixes well in sterile 1.5mL centrifuge tube, and test strips are inserted into mixed liquor, can observing response knot Fruit.
After establishing reaction system, setting 0min~45min time gradient, which is reacted, explores its optimum reacting time, discovery reaction 5min can produce macroscopic testing result, to keep reaction more stable, set 10min as optimum reacting time.Temperature Gradient testing result is as shown in Figure 2.
(3) exploration of optimal reaction temperature
Using 10min as optimum reacting time, 34 DEG C~42 DEG C reaction temperature gradients are set, find it in 34 DEG C~42 DEG C Can react, temperature gradient testing result as shown in figure 3, more demonstrate reaction of the invention be can at normal temperature into Capable, the red of detection line is deeper at 39 DEG C in reaction result, so selecting at 39 DEG C to be optimal reaction temperature.
(4) specificity detected
Using 10min as optimum reacting time, 39 DEG C are optimal reaction temperature, detect the specificity of reaction of the invention, are examined Survey result as shown in Figure 4, it is identical as the testing result of PCR, it is only capable of detecting M.bovis type strain PG45 and wild strain Ltb And WWM, it cannot detect remaining pathogenic bacteria.
(5) sensibility detected
Under the premise of specificity is good, the target fragment of LppA gene is cloned, calculates its copy number, and carry out 10 times of ladders Degree dilution finds that the bottom line that reaction of the invention can detect is 3 × 101, testing result as shown in Figure 5, significantly larger than PCR The 3 × 10 of method3
(6) stability detected
After the specificity and sensibility for having probed into reaction, the stability of reaction need to be detected.Therefore selection 3 × 107、 3×106、3×105The positive plasmid standard items of three various concentrations, under identical conditions in triplicate, the interior repetition of observation batch Effect, batch internal stability testing result is as shown in Figure 6;The positive plasmid standard items for taking above-mentioned 3 various concentrations, same In experiment in triplicate, observation batch between repeating effect, batch between stability experiment result as shown in Figure 7.
After method for building up, my 5, area, 53, pasture clinical sample is detected, finds the detection sun of method of the invention Property 22, sample, clinical sample is detected with traditional molecular biology for detection, discovery testing result and PCR detect As a result coincidence rate is 94%.
The present invention polymerize the specific primer and probe of amplified reaction by the design recombination to specific gene LppA, right Optimum reacting time is explored with optimal reaction temperature, the specificity of detection, sensibility, repeatability with stability, is looked for Optimum reaction condition is arrived, the specificity of foundation is good, sensibility is high and can stablize duplicate M.bovis rapid detection method. The method of detection M.bovis established by the present invention is easy to operate, convenient time saving, without large-scale experimental instrument and equipment, very It is suitble to the personnel of no any experiment basis to operate, is worth of widely use.
Without departing substantially from the scope or spirit of the invention, the specific embodiment of description of the invention can be done more Kind improvements and changes, this will be apparent to those skilled in the art.Other realities obtained by specification of the invention Applying mode for technical personnel is apparent obtain.Present specification and embodiment are merely exemplary.
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ttacctagag aaatattggg tttatatccc tcattaatag gaagtacaat tcttaataat 240
cttaaattag aagcaaatag aaaacaaaat cctaactcag attacgcaac taatgcagac 300
aactctggct ttggattatt attcaaaaaa gagaaaaatc tttttattga tgaaatgccg 360
tcacttcata aagaattaga gaaaatattc tttaatttta atcctaaata tacttcaaaa 420
tatgaagcta aaatagtggc tgctggcttt aacgatcttg aaggcgaatt aactcttggc 480
attcaaattt tatatagacc tgatacagct attgaaaata ctaacaacaa tacctatttt 540
caaagtttta aatttactgg ctttagaaaa tttgacttaa caaacagcga taataatgtt 600
ttaaaactaa aatttgacaa tcaaaattta gccaacatat ctaaaaaatg aagaaaacat 660
atgattcatt atgctagaca cactttaaaa aaagctatga ctgaaaatac ttcacttgca 720
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ggctcgctta ctagttttga tgatattttc gatataccaa ataatgattc tgttaagttt 960
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Claims (10)

1. a kind of for detecting the composition of Mycoplasma bovis, which is characterized in that including can be miscellaneous with the LppA gene of Mycoplasma bovis The first oligonucleotides, the second oligonucleotides and the third oligonucleotides handed over, in which:
The first area selective cross of first oligonucleotides and the LppA gene, second oligonucleotides with it is described The third regioselectivity of the second area selective cross of LppA gene, the third oligonucleotides and the LppA gene is miscellaneous It hands over, and the first area is located at 5 ' ends of the LppA gene, the second area is located at 3 ' ends of the LppA gene, institute The distance between first area and the second area are stated between 50bp~2000bp, the third region is located at described first Between region and the second area.
2. according to claim 1 for detecting the composition of Mycoplasma bovis, which is characterized in that first oligonucleotides Length be 35~45nt;The length of second oligonucleotides is 35~50nt, and its 5 ' end is marked with Biotin;It is described The length of third oligonucleotides is 40~55nt, and its 5 ' end, with detectable group, 3 ' ends, which have, terminates phosphate group and position THF cleavage site among the third oligonucleotides.
3. according to claim 2 for detecting the composition of Mycoplasma bovis, which is characterized in that first oligonucleotides Sequence as shown in SEQ ID No.1, the sequence of second oligonucleotides as shown in SEQ ID No.2, and 5 ' end have Biotin label, the sequence of the third oligonucleotides have FAM as shown in SEQ ID No.3, and at 5 ' ends, have at 3 ' ends Terminate phosphate group and between 31-32 bit base be idSp.
4. according to claim 3 for detecting the composition of Mycoplasma bovis, which is characterized in that further comprise recombination Enzyme, polymerase and single strand binding protein.
5. according to claim 3 for detecting the composition of Mycoplasma bovis, which is characterized in that further include buffering Liquid, the buffer includes energy matter, dithiothreitol (DTT) and polyethylene glycol, and pH is the concentration of 6.0~9.0, NaCl or KCl In 0~200nM, and the energy matter includes NTP/dNTP, phosphocreatine and creatine kinase.
6. according to claim 5 for detecting the composition of Mycoplasma bovis, which is characterized in that further comprise acetic acid Salt.
7. a kind of for detecting the kit of Mycoplasma bovis, which is characterized in that including described in any one according to claim 1~6 Composition.
8. a kind of method for detecting Mycoplasma bovis, which comprises the following steps:
(1) template of the biological sample from ox is provided;
(2) make the template and described in any item composition anabolic reaction systems according to claim 1~6,34 DEG C~42 It reacts the reaction system 5~20 minutes and obtains amplified production;
(3) contact the amplified production with markd flow measurement chromatograph test strip, when all aobvious at detection line and nature controlling line When showing red, determine the biological sample for positive sample, when be displayed in red at nature controlling line and detection line do not develop the color when, determine The biological sample is negative sample, and test strips failure is proved when nature controlling line is not displayed in red.
9. the method according to claim 8 for detecting Mycoplasma bovis, which is characterized in that the reaction system includes:
10. the method according to claim 9 for detecting Mycoplasma bovis, which is characterized in that the reaction temperature is 39 DEG C, the reaction time is 10 minutes.
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Publication number Priority date Publication date Assignee Title
CN110499376A (en) * 2019-09-09 2019-11-26 宁夏大学 It is composition, kit and the method for detecting target and carrying out Mycoplasma bovis detection with LppA gene
CN110499376B (en) * 2019-09-09 2023-07-25 宁夏大学 Composition, kit and method for detecting mycoplasma bovis by taking LppA gene as detection target
CN110564877A (en) * 2019-09-16 2019-12-13 宁夏大学 Composition, kit and method for detecting mycoplasma ovipneumoniae by using transketolase gene as target
CN110564877B (en) * 2019-09-16 2023-04-21 宁夏大学 Composition, kit and method for detecting mycoplasma ovipneumoniae by taking transketolase gene as target
CN110763843A (en) * 2019-11-06 2020-02-07 华中农业大学 Mycoplasma bovis double-antibody sandwich ELISA (enzyme-Linked immuno sorbent assay) detection kit and application thereof
CN111349637A (en) * 2020-03-15 2020-06-30 中国农业科学院兰州兽医研究所 Mycoplasma capricolum goat pneumonia subspecies specific protein and indirect ELISA kit
CN111349637B (en) * 2020-03-15 2023-05-12 中国农业科学院兰州兽医研究所 Mycoplasma caprae and subspecies pneumoniae specific proteins and indirect ELISA kit
CN115976254A (en) * 2022-10-05 2023-04-18 浙江农林大学 RPA-LFD primer and detection method for plant pathogenic fusarium oxysporum

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