CN108441503B - 麦草畏中间产物3,6-二氯龙胆酸脱氯酶DsmH2及其编码基因的应用 - Google Patents
麦草畏中间产物3,6-二氯龙胆酸脱氯酶DsmH2及其编码基因的应用 Download PDFInfo
- Publication number
- CN108441503B CN108441503B CN201810242125.3A CN201810242125A CN108441503B CN 108441503 B CN108441503 B CN 108441503B CN 201810242125 A CN201810242125 A CN 201810242125A CN 108441503 B CN108441503 B CN 108441503B
- Authority
- CN
- China
- Prior art keywords
- dsmh2
- dichloro
- enzyme
- dicamba
- dechlorination
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
Links
- 108090000790 Enzymes Proteins 0.000 title claims abstract description 84
- 102000004190 Enzymes Human genes 0.000 title claims abstract description 61
- 238000006298 dechlorination reaction Methods 0.000 title claims abstract description 61
- TYIRNSZWLDSWDM-UHFFFAOYSA-N 2,5-dichloro-3,6-dihydroxybenzoic acid Chemical compound OC(=O)C1=C(O)C(Cl)=CC(O)=C1Cl TYIRNSZWLDSWDM-UHFFFAOYSA-N 0.000 title claims abstract description 54
- IWEDIXLBFLAXBO-UHFFFAOYSA-N dicamba Chemical compound COC1=C(Cl)C=CC(Cl)=C1C(O)=O IWEDIXLBFLAXBO-UHFFFAOYSA-N 0.000 title abstract description 44
- 239000005504 Dicamba Substances 0.000 title abstract description 43
- 108090000623 proteins and genes Proteins 0.000 title abstract description 24
- 239000013067 intermediate product Substances 0.000 title abstract description 7
- 239000002773 nucleotide Substances 0.000 claims abstract description 5
- 125000003729 nucleotide group Chemical group 0.000 claims abstract description 5
- 125000003275 alpha amino acid group Chemical group 0.000 claims abstract 2
- 238000006731 degradation reaction Methods 0.000 claims description 27
- 230000015556 catabolic process Effects 0.000 claims description 25
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 claims description 8
- 241000894006 Bacteria Species 0.000 claims description 7
- 239000013604 expression vector Substances 0.000 claims description 6
- 239000002689 soil Substances 0.000 claims description 6
- 241001198387 Escherichia coli BL21(DE3) Species 0.000 claims description 2
- 238000003259 recombinant expression Methods 0.000 claims 2
- 102000005720 Glutathione transferase Human genes 0.000 abstract description 13
- 108010070675 Glutathione transferase Proteins 0.000 abstract description 13
- 230000000593 degrading effect Effects 0.000 abstract description 13
- 230000009261 transgenic effect Effects 0.000 abstract description 8
- 150000001413 amino acids Chemical class 0.000 abstract description 6
- 238000006042 reductive dechlorination reaction Methods 0.000 abstract description 6
- 230000037353 metabolic pathway Effects 0.000 abstract description 3
- 229940088598 enzyme Drugs 0.000 description 55
- 239000000047 product Substances 0.000 description 19
- RWSXRVCMGQZWBV-WDSKDSINSA-N glutathione Chemical compound OC(=O)[C@@H](N)CCC(=O)N[C@@H](CS)C(=O)NCC(O)=O RWSXRVCMGQZWBV-WDSKDSINSA-N 0.000 description 14
- 230000002363 herbicidal effect Effects 0.000 description 13
- 239000004009 herbicide Substances 0.000 description 13
- 230000000694 effects Effects 0.000 description 11
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 9
- 238000001514 detection method Methods 0.000 description 9
- 241000196324 Embryophyta Species 0.000 description 7
- 238000006243 chemical reaction Methods 0.000 description 7
- 238000005516 engineering process Methods 0.000 description 7
- 238000002474 experimental method Methods 0.000 description 7
- 229960003180 glutathione Drugs 0.000 description 7
- 239000007788 liquid Substances 0.000 description 7
- 230000000813 microbial effect Effects 0.000 description 7
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 6
- 238000006911 enzymatic reaction Methods 0.000 description 6
- 238000004949 mass spectrometry Methods 0.000 description 6
- 238000000034 method Methods 0.000 description 6
- 102000004169 proteins and genes Human genes 0.000 description 6
- 238000000746 purification Methods 0.000 description 6
- 230000002829 reductive effect Effects 0.000 description 6
- 238000004321 preservation Methods 0.000 description 5
- 238000005067 remediation Methods 0.000 description 5
- 239000000243 solution Substances 0.000 description 5
- 239000013598 vector Substances 0.000 description 5
- 241000364423 Sphingomonas sp. Ndbn-20 Species 0.000 description 4
- 229910052801 chlorine Inorganic materials 0.000 description 4
- 125000001309 chloro group Chemical group Cl* 0.000 description 4
- 230000001419 dependent effect Effects 0.000 description 4
- 230000029087 digestion Effects 0.000 description 4
- 230000007613 environmental effect Effects 0.000 description 4
- 238000004128 high performance liquid chromatography Methods 0.000 description 4
- 239000012528 membrane Substances 0.000 description 4
- 229930027945 nicotinamide-adenine dinucleotide Natural products 0.000 description 4
- 239000013612 plasmid Substances 0.000 description 4
- 238000011160 research Methods 0.000 description 4
- 239000002904 solvent Substances 0.000 description 4
- 238000012795 verification Methods 0.000 description 4
- MVFJOJHYMGUADK-UHFFFAOYSA-N 3-chloro-2,5-dihydroxybenzoic acid Chemical compound OC(=O)C1=CC(O)=CC(Cl)=C1O MVFJOJHYMGUADK-UHFFFAOYSA-N 0.000 description 3
- 238000010521 absorption reaction Methods 0.000 description 3
- 230000001580 bacterial effect Effects 0.000 description 3
- 230000008901 benefit Effects 0.000 description 3
- 210000004027 cell Anatomy 0.000 description 3
- 230000007246 mechanism Effects 0.000 description 3
- 244000005700 microbiome Species 0.000 description 3
- 239000000575 pesticide Substances 0.000 description 3
- 238000001228 spectrum Methods 0.000 description 3
- 239000006228 supernatant Substances 0.000 description 3
- UEBBRHBGSRRATA-UHFFFAOYSA-N 2-chloro-3,6-dihydroxybenzoic acid Chemical compound OC(=O)C1=C(O)C=CC(O)=C1Cl UEBBRHBGSRRATA-UHFFFAOYSA-N 0.000 description 2
- AULKDLUOQCUNOK-UHFFFAOYSA-N 3,5-dichloro-4-hydroxybenzoic acid Chemical compound OC(=O)C1=CC(Cl)=C(O)C(Cl)=C1 AULKDLUOQCUNOK-UHFFFAOYSA-N 0.000 description 2
- QGNLHMKIGMZKJX-UHFFFAOYSA-N 3-chloro-4-hydroxybenzoic acid Chemical compound OC(=O)C1=CC=C(O)C(Cl)=C1 QGNLHMKIGMZKJX-UHFFFAOYSA-N 0.000 description 2
- ZKHQWZAMYRWXGA-KQYNXXCUSA-N Adenosine triphosphate Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O ZKHQWZAMYRWXGA-KQYNXXCUSA-N 0.000 description 2
- ZKHQWZAMYRWXGA-UHFFFAOYSA-N Adenosine triphosphate Natural products C1=NC=2C(N)=NC=NC=2N1C1OC(COP(O)(=O)OP(O)(=O)OP(O)(O)=O)C(O)C1O ZKHQWZAMYRWXGA-UHFFFAOYSA-N 0.000 description 2
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 2
- VEXZGXHMUGYJMC-UHFFFAOYSA-M Chloride anion Chemical compound [Cl-] VEXZGXHMUGYJMC-UHFFFAOYSA-M 0.000 description 2
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 2
- 241000588724 Escherichia coli Species 0.000 description 2
- ACFIXJIJDZMPPO-NNYOXOHSSA-N NADPH Chemical compound C1=CCC(C(=O)N)=CN1[C@H]1[C@H](O)[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OC[C@@H]2[C@H]([C@@H](OP(O)(O)=O)[C@@H](O2)N2C3=NC=NC(N)=C3N=C2)O)O1 ACFIXJIJDZMPPO-NNYOXOHSSA-N 0.000 description 2
- 238000012408 PCR amplification Methods 0.000 description 2
- 150000001491 aromatic compounds Chemical class 0.000 description 2
- 230000006399 behavior Effects 0.000 description 2
- 238000007664 blowing Methods 0.000 description 2
- 239000000872 buffer Substances 0.000 description 2
- 239000007853 buffer solution Substances 0.000 description 2
- 230000006652 catabolic pathway Effects 0.000 description 2
- 238000005119 centrifugation Methods 0.000 description 2
- 239000000460 chlorine Substances 0.000 description 2
- 238000012258 culturing Methods 0.000 description 2
- 238000004925 denaturation Methods 0.000 description 2
- 230000036425 denaturation Effects 0.000 description 2
- 201000010099 disease Diseases 0.000 description 2
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 2
- 239000012154 double-distilled water Substances 0.000 description 2
- 238000001962 electrophoresis Methods 0.000 description 2
- 239000012634 fragment Substances 0.000 description 2
- 239000000499 gel Substances 0.000 description 2
- 108010037850 glycylvaline Proteins 0.000 description 2
- 238000011065 in-situ storage Methods 0.000 description 2
- 238000003780 insertion Methods 0.000 description 2
- 230000037431 insertion Effects 0.000 description 2
- 238000001819 mass spectrum Methods 0.000 description 2
- 230000002503 metabolic effect Effects 0.000 description 2
- 230000004060 metabolic process Effects 0.000 description 2
- BDAGIHXWWSANSR-UHFFFAOYSA-N methanoic acid Natural products OC=O BDAGIHXWWSANSR-UHFFFAOYSA-N 0.000 description 2
- 230000007269 microbial metabolism Effects 0.000 description 2
- 238000002156 mixing Methods 0.000 description 2
- 230000035772 mutation Effects 0.000 description 2
- BOPGDPNILDQYTO-NNYOXOHSSA-N nicotinamide-adenine dinucleotide Chemical compound C1=CCC(C(=O)N)=CN1[C@H]1[C@H](O)[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OC[C@@H]2[C@H]([C@@H](O)[C@@H](O2)N2C3=NC=NC(N)=C3N=C2)O)O1 BOPGDPNILDQYTO-NNYOXOHSSA-N 0.000 description 2
- 239000012071 phase Substances 0.000 description 2
- 230000035790 physiological processes and functions Effects 0.000 description 2
- 230000008569 process Effects 0.000 description 2
- 230000002441 reversible effect Effects 0.000 description 2
- 239000000126 substance Substances 0.000 description 2
- 238000012360 testing method Methods 0.000 description 2
- 230000009466 transformation Effects 0.000 description 2
- AYNPIRVEWMUJDE-UHFFFAOYSA-N 2,5-dichlorohydroquinone Chemical compound OC1=CC(Cl)=C(O)C=C1Cl AYNPIRVEWMUJDE-UHFFFAOYSA-N 0.000 description 1
- QCEPIUWMXRQPIF-UHFFFAOYSA-N 2-chloro-6-hydroxybenzoic acid Chemical compound OC(=O)C1=C(O)C=CC=C1Cl QCEPIUWMXRQPIF-UHFFFAOYSA-N 0.000 description 1
- FKIKPQHMWFZFEB-UHFFFAOYSA-N 3,6-dichloro-2-hydroxybenzoic acid Chemical compound OC(=O)C1=C(O)C(Cl)=CC=C1Cl FKIKPQHMWFZFEB-UHFFFAOYSA-N 0.000 description 1
- SLNKACMTMZYMNA-UHFFFAOYSA-N 3-(furan-2-yl)aniline Chemical compound NC1=CC=CC(C=2OC=CC=2)=C1 SLNKACMTMZYMNA-UHFFFAOYSA-N 0.000 description 1
- NOIIUHRQUVNIDD-UHFFFAOYSA-N 3-[[oxo(pyridin-4-yl)methyl]hydrazo]-N-(phenylmethyl)propanamide Chemical compound C=1C=CC=CC=1CNC(=O)CCNNC(=O)C1=CC=NC=C1 NOIIUHRQUVNIDD-UHFFFAOYSA-N 0.000 description 1
- OSWFIVFLDKOXQC-UHFFFAOYSA-N 4-(3-methoxyphenyl)aniline Chemical compound COC1=CC=CC(C=2C=CC(N)=CC=2)=C1 OSWFIVFLDKOXQC-UHFFFAOYSA-N 0.000 description 1
- DYJBRHDJGHQNNZ-UHFFFAOYSA-N 4-chloro-2,5-dihydroxybenzoic acid Chemical compound ClC1=CC(=C(C(=O)O)C=C1O)O DYJBRHDJGHQNNZ-UHFFFAOYSA-N 0.000 description 1
- LWXFCZXRFBUOOR-UHFFFAOYSA-N 4-chloro-2-hydroxybenzoic acid Chemical compound OC(=O)C1=CC=C(Cl)C=C1O LWXFCZXRFBUOOR-UHFFFAOYSA-N 0.000 description 1
- XRHGYUZYPHTUJZ-UHFFFAOYSA-N 4-chlorobenzoic acid Chemical compound OC(=O)C1=CC=C(Cl)C=C1 XRHGYUZYPHTUJZ-UHFFFAOYSA-N 0.000 description 1
- NKBASRXWGAGQDP-UHFFFAOYSA-N 5-chlorosalicylic acid Chemical compound OC(=O)C1=CC(Cl)=CC=C1O NKBASRXWGAGQDP-UHFFFAOYSA-N 0.000 description 1
- 229920000936 Agarose Polymers 0.000 description 1
- MPLOSMWGDNJSEV-WHFBIAKZSA-N Ala-Gly-Asp Chemical compound [H]N[C@@H](C)C(=O)NCC(=O)N[C@@H](CC(O)=O)C(O)=O MPLOSMWGDNJSEV-WHFBIAKZSA-N 0.000 description 1
- PMQXMXAASGFUDX-SRVKXCTJSA-N Ala-Lys-Leu Chemical compound CC(C)C[C@@H](C(O)=O)NC(=O)[C@@H](NC(=O)[C@H](C)N)CCCCN PMQXMXAASGFUDX-SRVKXCTJSA-N 0.000 description 1
- MDNAVFBZPROEHO-DCAQKATOSA-N Ala-Lys-Val Chemical compound [H]N[C@@H](C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C(C)C)C(O)=O MDNAVFBZPROEHO-DCAQKATOSA-N 0.000 description 1
- MDNAVFBZPROEHO-UHFFFAOYSA-N Ala-Lys-Val Natural products CC(C)C(C(O)=O)NC(=O)C(NC(=O)C(C)N)CCCCN MDNAVFBZPROEHO-UHFFFAOYSA-N 0.000 description 1
- WZGZDOXCDLLTHE-SYWGBEHUSA-N Ala-Trp-Ile Chemical compound C1=CC=C2C(C[C@@H](C(=O)N[C@@H]([C@@H](C)CC)C(O)=O)NC(=O)[C@H](C)N)=CNC2=C1 WZGZDOXCDLLTHE-SYWGBEHUSA-N 0.000 description 1
- SGYSTDWPNPKJPP-GUBZILKMSA-N Arg-Ala-Arg Chemical compound NC(=N)NCCC[C@H](N)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O SGYSTDWPNPKJPP-GUBZILKMSA-N 0.000 description 1
- VKKYFICVTYKFIO-CIUDSAMLSA-N Arg-Ala-Glu Chemical compound OC(=O)CC[C@@H](C(O)=O)NC(=O)[C@H](C)NC(=O)[C@@H](N)CCCN=C(N)N VKKYFICVTYKFIO-CIUDSAMLSA-N 0.000 description 1
- NIUDXSFNLBIWOB-DCAQKATOSA-N Arg-Leu-Cys Chemical compound CC(C)C[C@@H](C(=O)N[C@@H](CS)C(=O)O)NC(=O)[C@H](CCCN=C(N)N)N NIUDXSFNLBIWOB-DCAQKATOSA-N 0.000 description 1
- UZGFHWIJWPUPOH-IHRRRGAJSA-N Arg-Leu-Lys Chemical compound CC(C)C[C@@H](C(=O)N[C@@H](CCCCN)C(=O)O)NC(=O)[C@H](CCCN=C(N)N)N UZGFHWIJWPUPOH-IHRRRGAJSA-N 0.000 description 1
- BSYKSCBTTQKOJG-GUBZILKMSA-N Arg-Pro-Ala Chemical compound [H]N[C@@H](CCCNC(N)=N)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(O)=O BSYKSCBTTQKOJG-GUBZILKMSA-N 0.000 description 1
- PQAIOUVVZCOLJK-FXQIFTODSA-N Asn-Gln-Gln Chemical compound C(CC(=O)N)[C@@H](C(=O)N[C@@H](CCC(=O)N)C(=O)O)NC(=O)[C@H](CC(=O)N)N PQAIOUVVZCOLJK-FXQIFTODSA-N 0.000 description 1
- IXIWEFWRKIUMQX-DCAQKATOSA-N Asp-Arg-Leu Chemical compound CC(C)C[C@@H](C(O)=O)NC(=O)[C@H](CCCN=C(N)N)NC(=O)[C@@H](N)CC(O)=O IXIWEFWRKIUMQX-DCAQKATOSA-N 0.000 description 1
- DBWYWXNMZZYIRY-LPEHRKFASA-N Asp-Arg-Pro Chemical compound C1C[C@@H](N(C1)C(=O)[C@H](CCCN=C(N)N)NC(=O)[C@H](CC(=O)O)N)C(=O)O DBWYWXNMZZYIRY-LPEHRKFASA-N 0.000 description 1
- RSMIHCFQDCVVBR-CIUDSAMLSA-N Asp-Gln-Arg Chemical compound OC(=O)C[C@H](N)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(O)=O)CCCNC(N)=N RSMIHCFQDCVVBR-CIUDSAMLSA-N 0.000 description 1
- KFAFUJMGHVVYRC-DCAQKATOSA-N Asp-Leu-Met Chemical compound [H]N[C@@H](CC(O)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCSC)C(O)=O KFAFUJMGHVVYRC-DCAQKATOSA-N 0.000 description 1
- RSMZEHCMIOKNMW-GSSVUCPTSA-N Asp-Thr-Thr Chemical compound [H]N[C@@H](CC(O)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H]([C@@H](C)O)C(O)=O RSMZEHCMIOKNMW-GSSVUCPTSA-N 0.000 description 1
- YODBPLSWNJMZOJ-BPUTZDHNSA-N Asp-Trp-Arg Chemical compound C1=CC=C2C(=C1)C(=CN2)C[C@@H](C(=O)N[C@@H](CCCN=C(N)N)C(=O)O)NC(=O)[C@H](CC(=O)O)N YODBPLSWNJMZOJ-BPUTZDHNSA-N 0.000 description 1
- ZAMOUSCENKQFHK-UHFFFAOYSA-N Chlorine atom Chemical compound [Cl] ZAMOUSCENKQFHK-UHFFFAOYSA-N 0.000 description 1
- 229920000742 Cotton Polymers 0.000 description 1
- VYZAHLCBVHPDDF-UHFFFAOYSA-N Dinitrochlorobenzene Chemical compound [O-][N+](=O)C1=CC=C(Cl)C([N+]([O-])=O)=C1 VYZAHLCBVHPDDF-UHFFFAOYSA-N 0.000 description 1
- 241000620209 Escherichia coli DH5[alpha] Species 0.000 description 1
- PNENQZWRFMUZOM-DCAQKATOSA-N Gln-Glu-Leu Chemical compound [H]N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(C)C)C(O)=O PNENQZWRFMUZOM-DCAQKATOSA-N 0.000 description 1
- HYPVLWGNBIYTNA-GUBZILKMSA-N Gln-Leu-Ala Chemical compound [H]N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(O)=O HYPVLWGNBIYTNA-GUBZILKMSA-N 0.000 description 1
- NCWOMXABNYEPLY-NRPADANISA-N Glu-Ala-Val Chemical compound [H]N[C@@H](CCC(O)=O)C(=O)N[C@@H](C)C(=O)N[C@@H](C(C)C)C(O)=O NCWOMXABNYEPLY-NRPADANISA-N 0.000 description 1
- JPHYJQHPILOKHC-ACZMJKKPSA-N Glu-Asp-Asp Chemical compound OC(=O)CC[C@H](N)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](CC(O)=O)C(O)=O JPHYJQHPILOKHC-ACZMJKKPSA-N 0.000 description 1
- QJCKNLPMTPXXEM-AUTRQRHGSA-N Glu-Glu-Val Chemical compound CC(C)[C@@H](C(O)=O)NC(=O)[C@H](CCC(O)=O)NC(=O)[C@@H](N)CCC(O)=O QJCKNLPMTPXXEM-AUTRQRHGSA-N 0.000 description 1
- UJMNFCAHLYKWOZ-DCAQKATOSA-N Glu-Lys-Gln Chemical compound [H]N[C@@H](CCC(O)=O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(O)=O UJMNFCAHLYKWOZ-DCAQKATOSA-N 0.000 description 1
- JWNZHMSRZXXGTM-XKBZYTNZSA-N Glu-Ser-Thr Chemical compound [H]N[C@@H](CCC(O)=O)C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)O)C(O)=O JWNZHMSRZXXGTM-XKBZYTNZSA-N 0.000 description 1
- UUTGYDAKPISJAO-JYJNAYRXSA-N Glu-Tyr-Leu Chemical compound OC(=O)CC[C@H](N)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(O)=O)CC1=CC=C(O)C=C1 UUTGYDAKPISJAO-JYJNAYRXSA-N 0.000 description 1
- 244000068988 Glycine max Species 0.000 description 1
- 235000010469 Glycine max Nutrition 0.000 description 1
- 239000005562 Glyphosate Substances 0.000 description 1
- 241000238631 Hexapoda Species 0.000 description 1
- NOQPTNXSGNPJNS-YUMQZZPRSA-N His-Asn-Gly Chemical compound [H]N[C@@H](CC1=CNC=N1)C(=O)N[C@@H](CC(N)=O)C(=O)NCC(O)=O NOQPTNXSGNPJNS-YUMQZZPRSA-N 0.000 description 1
- FCPSGEVYIVXPPO-QTKMDUPCSA-N His-Thr-Arg Chemical compound [H]N[C@@H](CC1=CNC=N1)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O FCPSGEVYIVXPPO-QTKMDUPCSA-N 0.000 description 1
- 101000615488 Homo sapiens Methyl-CpG-binding domain protein 2 Proteins 0.000 description 1
- DMHGKBGOUAJRHU-UHFFFAOYSA-N Ile-Arg-Pro Natural products CCC(C)C(N)C(=O)NC(CCCN=C(N)N)C(=O)N1CCCC1C(O)=O DMHGKBGOUAJRHU-UHFFFAOYSA-N 0.000 description 1
- SVBAHOMTJRFSIC-SXTJYALSSA-N Ile-Ile-Asn Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](CC(=O)N)C(=O)O)N SVBAHOMTJRFSIC-SXTJYALSSA-N 0.000 description 1
- RCFDOSNHHZGBOY-UHFFFAOYSA-N L-isoleucyl-L-alanine Natural products CCC(C)C(N)C(=O)NC(C)C(O)=O RCFDOSNHHZGBOY-UHFFFAOYSA-N 0.000 description 1
- 239000012880 LB liquid culture medium Substances 0.000 description 1
- ZRLUISBDKUWAIZ-CIUDSAMLSA-N Leu-Ala-Asp Chemical compound CC(C)C[C@H](N)C(=O)N[C@@H](C)C(=O)N[C@H](C(O)=O)CC(O)=O ZRLUISBDKUWAIZ-CIUDSAMLSA-N 0.000 description 1
- CQQGCWPXDHTTNF-GUBZILKMSA-N Leu-Ala-Glu Chemical compound CC(C)C[C@H](N)C(=O)N[C@@H](C)C(=O)N[C@H](C(O)=O)CCC(O)=O CQQGCWPXDHTTNF-GUBZILKMSA-N 0.000 description 1
- ILJREDZFPHTUIE-GUBZILKMSA-N Leu-Asp-Glu Chemical compound [H]N[C@@H](CC(C)C)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](CCC(O)=O)C(O)=O ILJREDZFPHTUIE-GUBZILKMSA-N 0.000 description 1
- LSLUTXRANSUGFY-XIRDDKMYSA-N Leu-Trp-Asp Chemical compound [H]N[C@@H](CC(C)C)C(=O)N[C@@H](CC1=CNC2=C1C=CC=C2)C(=O)N[C@@H](CC(O)=O)C(O)=O LSLUTXRANSUGFY-XIRDDKMYSA-N 0.000 description 1
- OZTZJMUZVAVJGY-BZSNNMDCSA-N Leu-Tyr-His Chemical compound CC(C)C[C@@H](C(=O)N[C@@H](CC1=CC=C(C=C1)O)C(=O)N[C@@H](CC2=CN=CN2)C(=O)O)N OZTZJMUZVAVJGY-BZSNNMDCSA-N 0.000 description 1
- 102000003960 Ligases Human genes 0.000 description 1
- 108090000364 Ligases Proteins 0.000 description 1
- KCXUCYYZNZFGLL-SRVKXCTJSA-N Lys-Ala-Leu Chemical compound [H]N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(O)=O KCXUCYYZNZFGLL-SRVKXCTJSA-N 0.000 description 1
- RZHLIPMZXOEJTL-AVGNSLFASA-N Lys-Gln-Leu Chemical compound CC(C)C[C@@H](C(=O)O)NC(=O)[C@H](CCC(=O)N)NC(=O)[C@H](CCCCN)N RZHLIPMZXOEJTL-AVGNSLFASA-N 0.000 description 1
- GNLJXWBNLAIPEP-MELADBBJSA-N Lys-His-Pro Chemical compound C1C[C@@H](N(C1)C(=O)[C@H](CC2=CN=CN2)NC(=O)[C@H](CCCCN)N)C(=O)O GNLJXWBNLAIPEP-MELADBBJSA-N 0.000 description 1
- SKRGVGLIRUGANF-AVGNSLFASA-N Lys-Leu-Glu Chemical compound [H]N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(O)=O)C(O)=O SKRGVGLIRUGANF-AVGNSLFASA-N 0.000 description 1
- JYVCOTWSRGFABJ-DCAQKATOSA-N Lys-Met-Ser Chemical compound CSCC[C@@H](C(=O)N[C@@H](CO)C(=O)O)NC(=O)[C@H](CCCCN)N JYVCOTWSRGFABJ-DCAQKATOSA-N 0.000 description 1
- DLAFCQWUMFMZSN-GUBZILKMSA-N Met-Arg-Ala Chemical compound CSCC[C@H](N)C(=O)N[C@H](C(=O)N[C@@H](C)C(O)=O)CCCN=C(N)N DLAFCQWUMFMZSN-GUBZILKMSA-N 0.000 description 1
- HGAJNEWOUHDUMZ-SRVKXCTJSA-N Met-Leu-Glu Chemical compound CSCC[C@H](N)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(O)=O)CCC(O)=O HGAJNEWOUHDUMZ-SRVKXCTJSA-N 0.000 description 1
- XOFDBXYPKZUAAM-GUBZILKMSA-N Met-Met-Ser Chemical compound CSCC[C@@H](C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)O)N XOFDBXYPKZUAAM-GUBZILKMSA-N 0.000 description 1
- WUGMRIBZSVSJNP-UHFFFAOYSA-N N-L-alanyl-L-tryptophan Natural products C1=CC=C2C(CC(NC(=O)C(N)C)C(O)=O)=CNC2=C1 WUGMRIBZSVSJNP-UHFFFAOYSA-N 0.000 description 1
- YBAFDPFAUTYYRW-UHFFFAOYSA-N N-L-alpha-glutamyl-L-leucine Natural products CC(C)CC(C(O)=O)NC(=O)C(N)CCC(O)=O YBAFDPFAUTYYRW-UHFFFAOYSA-N 0.000 description 1
- QARPMYDMYVLFMW-KKUMJFAQSA-N Phe-Pro-Glu Chemical compound C([C@H](N)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](CCC(O)=O)C(O)=O)C1=CC=CC=C1 QARPMYDMYVLFMW-KKUMJFAQSA-N 0.000 description 1
- KLYYKKGCPOGDPE-OEAJRASXSA-N Phe-Thr-Leu Chemical compound [H]N[C@@H](CC1=CC=CC=C1)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(C)C)C(O)=O KLYYKKGCPOGDPE-OEAJRASXSA-N 0.000 description 1
- 231100000674 Phytotoxicity Toxicity 0.000 description 1
- LNLNHXIQPGKRJQ-SRVKXCTJSA-N Pro-Arg-Arg Chemical compound NC(N)=NCCC[C@@H](C(O)=O)NC(=O)[C@H](CCCN=C(N)N)NC(=O)[C@@H]1CCCN1 LNLNHXIQPGKRJQ-SRVKXCTJSA-N 0.000 description 1
- XROLYVMNVIKVEM-BQBZGAKWSA-N Pro-Asn-Gly Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H](CC(N)=O)C(=O)NCC(O)=O XROLYVMNVIKVEM-BQBZGAKWSA-N 0.000 description 1
- QGOZJLYCGRYYRW-KKUMJFAQSA-N Pro-Glu-Tyr Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC1=CC=C(O)C=C1)C(O)=O QGOZJLYCGRYYRW-KKUMJFAQSA-N 0.000 description 1
- GMJDSFYVTAMIBF-FXQIFTODSA-N Pro-Ser-Asp Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(O)=O)C(O)=O GMJDSFYVTAMIBF-FXQIFTODSA-N 0.000 description 1
- ITUDDXVFGFEKPD-NAKRPEOUSA-N Pro-Ser-Ile Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)CC)C(O)=O ITUDDXVFGFEKPD-NAKRPEOUSA-N 0.000 description 1
- VGFFUEVZKRNRHT-ULQDDVLXSA-N Pro-Trp-Glu Chemical compound C1C[C@H](NC1)C(=O)N[C@@H](CC2=CNC3=CC=CC=C32)C(=O)N[C@@H](CCC(=O)O)C(=O)O VGFFUEVZKRNRHT-ULQDDVLXSA-N 0.000 description 1
- YHUBAXGAAYULJY-ULQDDVLXSA-N Pro-Tyr-Leu Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H](CC1=CC=C(O)C=C1)C(=O)N[C@@H](CC(C)C)C(O)=O YHUBAXGAAYULJY-ULQDDVLXSA-N 0.000 description 1
- IMNVAOPEMFDAQD-NHCYSSNCSA-N Pro-Val-Glu Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCC(O)=O)C(O)=O IMNVAOPEMFDAQD-NHCYSSNCSA-N 0.000 description 1
- 102000007056 Recombinant Fusion Proteins Human genes 0.000 description 1
- 108010008281 Recombinant Fusion Proteins Proteins 0.000 description 1
- 241001304207 Rhizorhabdus Species 0.000 description 1
- QGMLKFGTGXWAHF-IHRRRGAJSA-N Ser-Arg-Phe Chemical compound [H]N[C@@H](CO)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CC1=CC=CC=C1)C(O)=O QGMLKFGTGXWAHF-IHRRRGAJSA-N 0.000 description 1
- NRCJWSGXMAPYQX-LPEHRKFASA-N Ser-Arg-Pro Chemical compound C1C[C@@H](N(C1)C(=O)[C@H](CCCN=C(N)N)NC(=O)[C@H](CO)N)C(=O)O NRCJWSGXMAPYQX-LPEHRKFASA-N 0.000 description 1
- SWSRFJZZMNLMLY-ZKWXMUAHSA-N Ser-Asp-Val Chemical compound [H]N[C@@H](CO)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](C(C)C)C(O)=O SWSRFJZZMNLMLY-ZKWXMUAHSA-N 0.000 description 1
- JIPVNVNKXJLFJF-BJDJZHNGSA-N Ser-Ile-Lys Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H](CCCCN)C(=O)O)NC(=O)[C@H](CO)N JIPVNVNKXJLFJF-BJDJZHNGSA-N 0.000 description 1
- YUJLIIRMIAGMCQ-CIUDSAMLSA-N Ser-Leu-Ser Chemical compound [H]N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(O)=O YUJLIIRMIAGMCQ-CIUDSAMLSA-N 0.000 description 1
- IXZHZUGGKLRHJD-DCAQKATOSA-N Ser-Leu-Val Chemical compound [H]N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C(C)C)C(O)=O IXZHZUGGKLRHJD-DCAQKATOSA-N 0.000 description 1
- HJAXVYLCKDPPDF-SRVKXCTJSA-N Ser-Phe-Cys Chemical compound C1=CC=C(C=C1)C[C@@H](C(=O)N[C@@H](CS)C(=O)O)NC(=O)[C@H](CO)N HJAXVYLCKDPPDF-SRVKXCTJSA-N 0.000 description 1
- MQUZANJDFOQOBX-SRVKXCTJSA-N Ser-Phe-Ser Chemical compound [H]N[C@@H](CO)C(=O)N[C@@H](CC1=CC=CC=C1)C(=O)N[C@@H](CO)C(O)=O MQUZANJDFOQOBX-SRVKXCTJSA-N 0.000 description 1
- VVKVHAOOUGNDPJ-SRVKXCTJSA-N Ser-Tyr-Ser Chemical compound [H]N[C@@H](CO)C(=O)N[C@@H](CC1=CC=C(O)C=C1)C(=O)N[C@@H](CO)C(O)=O VVKVHAOOUGNDPJ-SRVKXCTJSA-N 0.000 description 1
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 1
- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 1
- 240000006394 Sorghum bicolor Species 0.000 description 1
- 235000011684 Sorghum saccharatum Nutrition 0.000 description 1
- 241000383837 Sphingobium Species 0.000 description 1
- VFEHSAJCWWHDBH-RHYQMDGZSA-N Thr-Arg-Leu Chemical compound [H]N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CC(C)C)C(O)=O VFEHSAJCWWHDBH-RHYQMDGZSA-N 0.000 description 1
- KZSYAEWQMJEGRZ-RHYQMDGZSA-N Thr-Leu-Val Chemical compound [H]N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C(C)C)C(O)=O KZSYAEWQMJEGRZ-RHYQMDGZSA-N 0.000 description 1
- 235000021307 Triticum Nutrition 0.000 description 1
- 244000098338 Triticum aestivum Species 0.000 description 1
- 238000011111 UV-scan method Methods 0.000 description 1
- XTDDIVQWDXMRJL-IHRRRGAJSA-N Val-Leu-His Chemical compound CC(C)C[C@@H](C(=O)N[C@@H](CC1=CN=CN1)C(=O)O)NC(=O)[C@H](C(C)C)N XTDDIVQWDXMRJL-IHRRRGAJSA-N 0.000 description 1
- HPANGHISDXDUQY-ULQDDVLXSA-N Val-Lys-Phe Chemical compound CC(C)[C@@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC1=CC=CC=C1)C(=O)O)N HPANGHISDXDUQY-ULQDDVLXSA-N 0.000 description 1
- USLVEJAHTBLSIL-CYDGBPFRSA-N Val-Pro-Ile Chemical compound CC[C@H](C)[C@@H](C(O)=O)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](N)C(C)C USLVEJAHTBLSIL-CYDGBPFRSA-N 0.000 description 1
- JSOXWWFKRJKTMT-WOPDTQHZSA-N Val-Val-Pro Chemical compound CC(C)[C@@H](C(=O)N[C@@H](C(C)C)C(=O)N1CCC[C@@H]1C(=O)O)N JSOXWWFKRJKTMT-WOPDTQHZSA-N 0.000 description 1
- 241000607479 Yersinia pestis Species 0.000 description 1
- 240000008042 Zea mays Species 0.000 description 1
- 235000005824 Zea mays ssp. parviglumis Nutrition 0.000 description 1
- 235000002017 Zea mays subsp mays Nutrition 0.000 description 1
- 238000001042 affinity chromatography Methods 0.000 description 1
- KOSRFJWDECSPRO-UHFFFAOYSA-N alpha-L-glutamyl-L-glutamic acid Natural products OC(=O)CCC(N)C(=O)NC(CCC(O)=O)C(O)=O KOSRFJWDECSPRO-UHFFFAOYSA-N 0.000 description 1
- 230000003321 amplification Effects 0.000 description 1
- 238000004458 analytical method Methods 0.000 description 1
- 238000000137 annealing Methods 0.000 description 1
- 239000003242 anti bacterial agent Substances 0.000 description 1
- 229940088710 antibiotic agent Drugs 0.000 description 1
- 108010060035 arginylproline Proteins 0.000 description 1
- 108010040443 aspartyl-aspartic acid Proteins 0.000 description 1
- 108010093581 aspartyl-proline Proteins 0.000 description 1
- 238000003556 assay Methods 0.000 description 1
- 239000012298 atmosphere Substances 0.000 description 1
- 238000010009 beating Methods 0.000 description 1
- 230000003115 biocidal effect Effects 0.000 description 1
- 238000006065 biodegradation reaction Methods 0.000 description 1
- 239000012620 biological material Substances 0.000 description 1
- 230000010261 cell growth Effects 0.000 description 1
- 238000002144 chemical decomposition reaction Methods 0.000 description 1
- 239000003153 chemical reaction reagent Substances 0.000 description 1
- AJPXTSMULZANCB-UHFFFAOYSA-N chlorohydroquinone Chemical compound OC1=CC=C(O)C(Cl)=C1 AJPXTSMULZANCB-UHFFFAOYSA-N 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 238000010367 cloning Methods 0.000 description 1
- 239000011248 coating agent Substances 0.000 description 1
- 238000000576 coating method Methods 0.000 description 1
- 229910017052 cobalt Inorganic materials 0.000 description 1
- 239000010941 cobalt Substances 0.000 description 1
- GUTLYIVDDKVIGB-UHFFFAOYSA-N cobalt atom Chemical compound [Co] GUTLYIVDDKVIGB-UHFFFAOYSA-N 0.000 description 1
- 229910001429 cobalt ion Inorganic materials 0.000 description 1
- XLJKHNWPARRRJB-UHFFFAOYSA-N cobalt(2+) Chemical compound [Co+2] XLJKHNWPARRRJB-UHFFFAOYSA-N 0.000 description 1
- 239000012141 concentrate Substances 0.000 description 1
- 230000001276 controlling effect Effects 0.000 description 1
- 238000001816 cooling Methods 0.000 description 1
- 235000005822 corn Nutrition 0.000 description 1
- 230000003247 decreasing effect Effects 0.000 description 1
- 239000007857 degradation product Substances 0.000 description 1
- 210000004443 dendritic cell Anatomy 0.000 description 1
- 238000001784 detoxification Methods 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- 229940079919 digestives enzyme preparation Drugs 0.000 description 1
- 238000004090 dissolution Methods 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 238000001035 drying Methods 0.000 description 1
- 230000002255 enzymatic effect Effects 0.000 description 1
- 230000009088 enzymatic function Effects 0.000 description 1
- 238000001976 enzyme digestion Methods 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 238000000855 fermentation Methods 0.000 description 1
- 230000004151 fermentation Effects 0.000 description 1
- 238000001914 filtration Methods 0.000 description 1
- 235000019253 formic acid Nutrition 0.000 description 1
- 230000006870 function Effects 0.000 description 1
- XDDAORKBJWWYJS-UHFFFAOYSA-N glyphosate Chemical compound OC(=O)CNCP(O)(O)=O XDDAORKBJWWYJS-UHFFFAOYSA-N 0.000 description 1
- 229940097068 glyphosate Drugs 0.000 description 1
- 239000003102 growth factor Substances 0.000 description 1
- 239000001963 growth medium Substances 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- 108010085325 histidylproline Proteins 0.000 description 1
- 239000005556 hormone Substances 0.000 description 1
- 229940088597 hormone Drugs 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- 238000002743 insertional mutagenesis Methods 0.000 description 1
- BPHPUYQFMNQIOC-NXRLNHOXSA-N isopropyl beta-D-thiogalactopyranoside Chemical compound CC(C)S[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O BPHPUYQFMNQIOC-NXRLNHOXSA-N 0.000 description 1
- 229960000318 kanamycin Drugs 0.000 description 1
- 229930027917 kanamycin Natural products 0.000 description 1
- SBUJHOSQTJFQJX-NOAMYHISSA-N kanamycin Chemical compound O[C@@H]1[C@@H](O)[C@H](O)[C@@H](CN)O[C@@H]1O[C@H]1[C@H](O)[C@@H](O[C@@H]2[C@@H]([C@@H](N)[C@H](O)[C@@H](CO)O2)O)[C@H](N)C[C@@H]1N SBUJHOSQTJFQJX-NOAMYHISSA-N 0.000 description 1
- 229930182823 kanamycin A Natural products 0.000 description 1
- 108010091871 leucylmethionine Proteins 0.000 description 1
- 108010057821 leucylproline Proteins 0.000 description 1
- 239000007791 liquid phase Substances 0.000 description 1
- 230000007774 longterm Effects 0.000 description 1
- 231100000053 low toxicity Toxicity 0.000 description 1
- 230000028744 lysogeny Effects 0.000 description 1
- 108010017391 lysylvaline Proteins 0.000 description 1
- 239000002609 medium Substances 0.000 description 1
- 239000002207 metabolite Substances 0.000 description 1
- 230000005012 migration Effects 0.000 description 1
- 238000013508 migration Methods 0.000 description 1
- 239000000203 mixture Substances 0.000 description 1
- 229910052757 nitrogen Inorganic materials 0.000 description 1
- 238000000655 nuclear magnetic resonance spectrum Methods 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 239000012074 organic phase Substances 0.000 description 1
- KGCNHWXDPDPSBV-UHFFFAOYSA-N p-nitrobenzyl chloride Chemical compound [O-][N+](=O)C1=CC=C(CCl)C=C1 KGCNHWXDPDPSBV-UHFFFAOYSA-N 0.000 description 1
- 230000020477 pH reduction Effects 0.000 description 1
- 230000037361 pathway Effects 0.000 description 1
- 239000002957 persistent organic pollutant Substances 0.000 description 1
- 108010012581 phenylalanylglutamate Proteins 0.000 description 1
- 238000001782 photodegradation Methods 0.000 description 1
- 230000008635 plant growth Effects 0.000 description 1
- 239000003375 plant hormone Substances 0.000 description 1
- 238000003752 polymerase chain reaction Methods 0.000 description 1
- 239000012474 protein marker Substances 0.000 description 1
- 238000011084 recovery Methods 0.000 description 1
- 230000009467 reduction Effects 0.000 description 1
- 230000001105 regulatory effect Effects 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 238000012216 screening Methods 0.000 description 1
- 238000012163 sequencing technique Methods 0.000 description 1
- 239000000741 silica gel Substances 0.000 description 1
- 229910002027 silica gel Inorganic materials 0.000 description 1
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 1
- 238000005507 spraying Methods 0.000 description 1
- 230000003068 static effect Effects 0.000 description 1
- 239000008223 sterile water Substances 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- STOSPPMGXZPHKP-UHFFFAOYSA-N tetrachlorohydroquinone Chemical compound OC1=C(Cl)C(Cl)=C(O)C(Cl)=C1Cl STOSPPMGXZPHKP-UHFFFAOYSA-N 0.000 description 1
- 238000010257 thawing Methods 0.000 description 1
- 238000004809 thin layer chromatography Methods 0.000 description 1
- 238000002604 ultrasonography Methods 0.000 description 1
- 238000005406 washing Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/14—Hydrolases (3)
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B09—DISPOSAL OF SOLID WASTE; RECLAMATION OF CONTAMINATED SOIL
- B09C—RECLAMATION OF CONTAMINATED SOIL
- B09C1/00—Reclamation of contaminated soil
- B09C1/10—Reclamation of contaminated soil microbiologically, biologically or by using enzymes
-
- C—CHEMISTRY; METALLURGY
- C02—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F3/00—Biological treatment of water, waste water, or sewage
- C02F3/34—Biological treatment of water, waste water, or sewage characterised by the microorganisms used
- C02F3/342—Biological treatment of water, waste water, or sewage characterised by the microorganisms used characterised by the enzymes used
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/70—Vectors or expression systems specially adapted for E. coli
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8274—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for herbicide resistance
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y308/00—Hydrolases acting on halide bonds (3.8)
- C12Y308/01—Hydrolases acting on halide bonds (3.8) in C-halide substances (3.8.1)
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B09—DISPOSAL OF SOLID WASTE; RECLAMATION OF CONTAMINATED SOIL
- B09C—RECLAMATION OF CONTAMINATED SOIL
- B09C2101/00—In situ
-
- C—CHEMISTRY; METALLURGY
- C02—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F2101/00—Nature of the contaminant
- C02F2101/30—Organic compounds
- C02F2101/306—Pesticides
-
- C—CHEMISTRY; METALLURGY
- C02—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F—TREATMENT OF WATER, WASTE WATER, SEWAGE, OR SLUDGE
- C02F2101/00—Nature of the contaminant
- C02F2101/30—Organic compounds
- C02F2101/36—Organic compounds containing halogen
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- General Engineering & Computer Science (AREA)
- Biomedical Technology (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Plant Pathology (AREA)
- Environmental & Geological Engineering (AREA)
- Mycology (AREA)
- Soil Sciences (AREA)
- Medicinal Chemistry (AREA)
- Cell Biology (AREA)
- Biodiversity & Conservation Biology (AREA)
- Hydrology & Water Resources (AREA)
- Water Supply & Treatment (AREA)
- Enzymes And Modification Thereof (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Abstract
本发明公开了麦草畏中间产物3,6‑二氯龙胆酸脱氯酶DsmH2及其编码基因的应用。dsmH2其核苷酸序列为SEQ ID NO.1,全长741bp,编码246个氨基酸,其氨基酸序列为SEQ ID NO.2。DsmH2是首次发现参与麦草畏下游代谢路径的谷胱甘肽硫转移酶类型的还原脱氯酶,能在30min内降解100mg/l的3,6‑二氯龙胆酸。因此,3,6‑二氯龙胆酸脱氯酶基因dsmH2在构建降解麦草畏转基因作物中应用潜能巨大。
Description
技术领域
本发明属于环境微生物和农业领域,涉及参与除草剂麦草畏微生物降解过程中的两个脱氯酶及其编码基因的应用。
背景技术
农药是指应用于防治危害农作物的病虫、杂草等有害生物以及调节植物生长的化学试剂的总称,是保障现代农业生产力的重要手段,合理使用农药可以有效的防治作物病害,提高作物产量。除草剂的使用能有效减轻农业劳动强度,提高作物产量,但是随着除草剂的大量和长期使用,其残留对大气、土壤及水体造成的危害越来越严重,同时对人类健康造成威胁。农药污染修复技术可分为物理降解(热降解、光降解)、化学降解和生物降解。微生物修复技术是一种原位生物修复技术,具有安全温和、效率高、效果好、费用低、无二次污染等多个优点,适合大面积面源污染修复,是土壤有机污染物修复技术的主流和发展方向。而且抗/降解除草剂转基因技术是解决除草剂药害的有效途径,而抗除草剂和降解除草剂的基因一般来自微生物降解基因。
麦草畏(dicamba)(3,6-二氯-2-甲氧基苯甲酸,又名百草敌)是60年代由诺华(现在的先正达)开发的激素类除草剂,对一年生和多年生阔叶杂草有显著防除效果。麦草畏用于苗后喷雾,药剂被被植株吸收、传导,多集中在分生组织及代谢活动旺盛的部位,阻碍植物激素的正常活动,从而使其死亡,能防除200多种杂草,广泛应用于玉米、高粱和小麦等农田杂草防治,目前全球使用量达1.5万吨。麦草畏具有广谱高效、低毒和杂草抗性产生慢等优点,可有效杀死草甘膦抗性杂草,是美国孟山都生物技术公司研发的新一代抗除草剂转基因作物的靶标除草剂。孟山都公司利用麦草畏脱甲基酶基因dmo构建了抗除草剂转基因大豆和棉花,2015年进入商业化阶段,可以预见,随着抗麦草畏转基因作物的商业化推广,麦草畏的使用量会大幅度提高。麦草畏在土壤中稳定,一般能保持40天以上,其在环境中的降解的主力军是微生物,目前已筛选到多种麦草畏的降解菌株,克隆到多个麦草畏降解基因,但是关于麦草畏的微生物降解中间产物3,6-二氯龙胆酸的进一步降解机制,降解基因和酶,目前还没有报道,这严重制约了对麦草畏的环境行为和生态安全方面的研究。因此有必要深入研究麦草畏的微生物代谢的完整降解途径,降解机制,这对研究麦草畏在环境迁移、转化和降解等环境行为及生态安全性具有重要的指导价值。
3,6-二氯龙胆酸(3,6-DCGA)是麦草畏微生物代谢过程中的中间产物,是氯代芳香化合物,脱氯反应一般为脱毒反应,因此3,6-二氯龙胆酸脱氯酶基因和酶的鉴定具有非常重要的应用价值。在治理农药残留中主要具有以下作用,(一)通过现代生物工程技术将降解基因导入作物构建相应的除草剂抗性转基因作物,(二)通过现代微生物发酵技术将脱氯酶DsmH1和DsmH2制成酶制剂,实现土壤原位修复。综上所述,开展麦草畏降解过程中的降解基因、酶的研究具有非常重要的理论和实际应用价值。
发明内容
本发明的目的是针对现有麦草畏微生物降解机制研究的缺乏,提供3,6-二氯龙胆酸脱氯酶基因,该基因参与麦草畏下游降解路径,麦草畏脱甲基生成3,6-二氯水杨酸(3,6-DCSA),然后3,6-DCSA 5-羟基化生成3,6-二氯龙胆酸(3,6-DCGA),本发明脱氯酶DsmH2能将3,6-二氯龙胆酸6号位置的氯离子脱去生成3-氯龙胆酸,代谢途径见图1。本发明的另一目的是提供该3,6-二氯龙胆酸脱氯酶基因编码的蛋白DsmH2。DsmH2是首次发现参与麦草畏下游代谢路径的依赖GSH的谷胱甘肽硫转移酶类型的还原脱氯酶。本发明的又一目的是提供基因dsmH2及其编码蛋白的应用。
发明内容
本发明的目的可通过以下技术方案实现:
一种3,6-二氯龙胆酸脱氯酶基因dsmH2,其核苷酸序列为SEQ ID NO.1。
3,6-二氯龙胆酸脱氯酶基因dsmH2核苷酸序列所编码的3,6-二氯龙胆酸脱氯酶DsmH2,其氨基酸序列为SEQ ID NO.2。
含有所述的还原脱氯酶基因dsmH2的重组蛋白表达载体pET-24b-dsmH2。
所述的蛋白表达载体,优选将还原脱氯酶基因dsmH2插入pET-24b(+)的酶切位点NdeI和XhoI之间所得,所述的还原脱氯酶基因dsmH2是以保藏号为CCTCC NO:M 2014550的菌株Ndbn-20基因组DNA为模板,SEQID NO.3和SEQID NO.4所示的引物进行PCR扩增得到。
含有所述的还原脱氯酶基因dsmH2的高效表达菌株,所述的表达菌株优选Ecoli.BL21(DE3)。
所述3,6-二氯龙胆酸脱氯酶基因dsmH2在构建麦草畏下游降解产物3,6-二氯龙胆酸脱氯反应转基因作物中的应用。
所述3,6-二氯龙胆酸脱氯酶基因dsmH2在3,6-二氯龙胆酸脱氯反应中的应用。
所述3,6-二氯龙胆酸脱氯酶DsmH2在降解3,6-二氯龙胆酸中的应用。
所述3,6-二氯龙胆酸脱氯酶DsmH2在去除土壤、水体中3,6-二氯龙胆酸的应用。
有益效果:
本发明首次公开了除草剂麦草畏微生物代谢过程中的一个脱氯酶DsmH2及其应用。麦草畏中间产物3,6-二氯龙胆酸(3,6-DCGA)脱氯酶基因dsmH2其核苷酸及氨基酸序列分别为:SEQ ID NO.1,SEQ ID NO.2,编码246个氨基酸。3,6-二氯龙胆酸(3,6-DCGA)6-脱氯酶基因dsmH2是首次发现参与麦草畏下游代谢路径的依赖GSH的谷胱甘肽硫转移酶类型还原脱氯酶的编码基因,DsmH2能高效快速降解3,6-二氯龙胆酸,因此DsmH2在降解麦草畏的过程中起着重要的作用,在构建降解麦草畏转基因作物中应用潜能巨大。
附图说明:
图1麦草畏降解菌Rhizorhabdus dicambivorans Ndbn-20麦草畏降解途径推测
图2Ndbn-20粗酶脱氯酶功能检测
A.Ndbn-20粗酶液+GSH降解3,6-DCGA的HPLC图谱;B.5.40min处产物峰的MS图谱
图3脱氯酶DsmH2SDS-PAGE电泳图,
M:蛋白Marker;1:E.coli BL21(Pet-24b-dsmH2)粗酶;2:钴柱纯化后的脱氯酶DsmH2
图4脱氯酶DsmH2降解3,6-二氯龙胆酸的紫外扫描图,
290nm处为3,6-DCGA的峰,325nm处为产物的峰
图5脱氯酶DsmH2降解3,6-二氯龙胆酸的液质图谱,
A:i,CK 3,6-DCGA 0.1mM;ii,3,6-DCGA 0.1Mm加脱氯酶DsmH2反应2min;iii,3,6-DCGA0.1mM加脱氯酶DsmH2反应5min;B:5.39min处的产物MS图谱
图6脱氯产物核磁检测图谱
图7敲除菌株Ndbn-20ΔdsmH2降解3,6-DCGA和麦草畏的降解曲线
生物材料保藏信息:
Ndbn-20,分类命名为Sphingomonas sp.Ndbn-20,保藏于中国典型培养物保藏中心,保藏地址为中国武汉大学,保藏日期为2014年11月5日,保藏编号为CCTCC NO:M2014550。
具体实施方式
以下实施例中使用的微生物来源如下:大肠杆菌DH5α购自宝生物工程(大连)有限公司,大肠杆菌高表达载体pET-24b(+)购自Novegen公司,表达宿主菌大肠杆菌BL21(DE3)购自上海英骏生物技术有限公司。
实施例1.3,6-二氯龙胆酸脱氯酶基因dsmH1,dsmH2的克隆
1.1代谢产物检测
1.1.1麦草畏降解菌株Ndbn-20粗酶3,6-DCGA脱氯酶活性检测
本实验的采用的菌株为由本实验室成员分离得到的麦草畏高效降解菌Rhizorhabdus dicambivorans Ndbn-20(以前命名为Sphingomonas sp.Ndbn-20),将Ndbn-20在100ml 1/5LB液体培养基中培养至对数期,离心收集菌体,采用PBS缓冲液洗涤2次,10ml PBS缓冲液重悬,采用超声破碎(Auto Science,UH-650B ultrasonic processor,30%intensity)5-10分钟,12000rpm离心40min,收集上清,此上清液即为粗酶液。
酶活反应体系(1ml):加有PBS(50mM,pH 7.0),0.1mM 3,6-二氯龙胆酸,粗酶液100μl,分别加入不同的辅因子NADH,NADPH,GSH,ATP,30℃反应1h。将酶反应足够长的时间,采用HCl酸化,然后用乙酸乙酯萃取,取上层有机相,采用无水硫酸钠吸干水分,再采用氮气将溶剂乙酸乙酯吹干,用甲醇溶解,采用0.22μm的滤膜对样品进行过滤,进行HPLC检测发现加辅因子NADH,NADPH,ATP的酶反应中3,6-二氯龙胆酸的峰没有下降,而加有GSH的粗酶反应中3,6-二氯龙胆酸的峰有明显的下降,并且有一个产物峰产生,通过质谱分析,此产物为脱掉一个氯原子的3,6-二氯龙胆酸的分子量,见图2。粗酶降解试验表明催化3,6-二氯龙胆酸脱氯反应的脱氯酶是一个依赖GSH的还原脱氯酶,而且此还原脱氯实验可以在有氧条件下发生,因此极有可能为一种依赖还原型GSH谷胱甘肽硫转移酶类型的还原脱氯酶。
1.1.2查阅文献对麦草畏降解下游途径进行推测
通过粗酶的实验,我们确定了脱氯酶的类型,很快通过查阅文献找到来自Sphingobium chlorophenolicum ATCC 39723的谷胱甘肽硫转移酶类型的还原脱氯酶PcpC,通过将它的氨基酸序列与菌株Ndbn-20的基因组进行比较,检索到与PcpC氨基酸序列具有31%同源性的基因序列,命名为dsmH2,采用PCR将基因扩增出来,进行蛋白表达及功能验证。
实施例2脱氯酶基因在BL21(pET-24b(+))中的高效表达
2.1脱氯酶基因的PCR扩增
以正向引物:5’-TAAGAAGGAGATATACATATGACCCATCTGGACCTGTACAATTAC-3’(SEQ IDNO.3),反向引物:5’-TGGTGGTGGTGCTCGAGGATCCCACCCTTCCAATTGGGCATC-3’(SEQ ID NO.4)。用PCR从Ndbn-20基因组DNA中扩增出dsmH2。
扩增体系:
PCR扩增程序:
a.98℃变性3min;
b.98℃变性0.5min,58℃退火0.5min,72℃延伸1.0min,进行30个循环;
c.72℃延伸10min,冷却到室温。
2.2PCR产物和质粒的双酶切、产物纯化和酶连
PCR产物使用凝胶纯化回收试剂盒,具体方法参考试剂盒说明书。纯化后的PCR产物与质粒分别用相应的酶进行酶切,以序列两端分别引入Nde I和Xho I酶切位点,酶切体系如下:
10×M Buffer 5μL
Nde I(10U·μL-1)2.0μL
Xho I(10U·μL-1)2.0μL DNA(纯化后的PCR或质粒)30μL
ddH2O 11μL
37℃酶切30min,0.75%的琼脂糖核酸电泳检测酶切效果。然后使用凝胶纯化回收试剂盒纯化回收相应的DNA片段,然后用T4连接酶与同样双酶切的表达载体pET-24b(+)进行酶连,酶连体系如下:
10×T4ligase buffer 1.0μL
DNA(PCR双酶切)4.0μL
pBBR1MCS-2 2.0μL
T4ligase 0.5μL
ddH2O 2.5μL
16℃温浴12h。
2.3酶连产物转化和阳性转化子的筛选
从-70℃取一管E.coli BL21(DE3)感受态细胞(100μL),握在掌心融化后,加入10μL的酶连产物(体积不超过感受态细胞的10%),轻轻转动管体混匀,静置于冰上30min。轻轻将离心管放入42℃水浴锅热激60-90s,然后将离心管重新置于冰上,10min。加入500-800μLLB培养基,将离心管放到37℃摇床,150rpm,45-60min复苏,并且表达质粒编码的抗生素抗性基因。离心管5,000rpm,2min,弃部分上清,留约200μL,用枪吹打将菌体混匀,吸取100μL混合液均匀涂布到含有卡那霉素100mg/L的LB平板上,37℃过夜培养,挑取长出的单菌落,测序验证目的基因连接到载体上而且末端连有6个His-tag,将此转化子保存。
2.4DsmH2的表达、纯化
BL21(DsmH2)在LB中,37℃,150rpm摇床培养至OD 600nm为0.4到0.6之间,然后加0.05mM IPTG,16℃诱导8个小时,离心收集菌体,采用PBS(50mM,pH 7.0)将菌体洗两遍,用10ml的PBS缓冲液重悬菌体,超声破碎5-10分钟,12000rpm离心40min,收集上清,用钴离子亲和层析柱对DsmH2进行纯化,纯化后的酶进行蛋白质电泳,见图3。
2.5DsmH2活力测定
酶活反应体系(1ml):加有PBS(50mM,pH 7.0),0.1mM 3,6-二氯龙胆酸,反应酶量(2.4中纯化所得)10μl,30℃反应。每个反应以加入酶开始计时,通过紫外扫描进行定时检测。3,6-二氯龙胆酸的紫外吸收峰最高是300nm,经过反应后产生脱氯产物,此物质的紫外吸收峰为325nm,因此通过紫外扫描(200nm-400nm)可以看到紫外峰会发生偏移,降解情况见图4。将酶反应液通过酸化,萃取,吸干水分,吹干,甲醇溶解,过滤,进行HPLC检测发现3,6-二氯龙胆酸的峰下降,并产生了新峰,质谱检测为脱氯产物,见图5。酶降解试验表明纯化后的脱氯酶DsmH2能降解3,6-二氯龙胆酸。通过酶活检测DsmH2降解3,6-二氯龙胆酸的比酶活为23.24±2.73μM/min/mg protein。
2.6脱氯产物的鉴定
通过质谱鉴定得到,脱氯产物是3,6-二氯龙胆酸脱掉一个氯原子的分子量,但是3,6-二氯龙胆酸的分子结构中有两个氯原子,因此需要确定脱氯反应脱去的氯离子是哪个位置的氯,我们采用的方法是核磁鉴定。采用薄层层析的方法将酶反应液中的产物进行分离纯化,通过硅胶板预实验确定展开剂的配方,通过大量实验得到合适的展开剂为:乙酸乙酯:氯仿:甲酸=10:6:1,将纯化好的脱氯产物经过液相和质谱的鉴定确定为单一的物质后进行H1NMR检测,检测结果见图6,通过分析,核磁结果,脱氯产物脱掉的氯是6号位置的氯,脱氯生成3-氯龙胆酸。
2.7DsmH2底物谱的测定
通过选用不同的氯代芳香族化合物,优选3,6-二氯龙胆酸的类似物,主要有:3-氯龙胆酸,4-氯龙胆酸,6-氯龙胆酸,3-氯水杨酸,4-氯水杨酸,5-氯水杨酸,6-氯水杨酸,对硝基氯化苄,四氯氢醌,2,5-二氯对苯二酚,3-氯-4-羟基苯甲酸,4-氯苯甲酸,2-氯对苯二酚,3,5-二氯-4-羟基苯甲酸,2,4-二硝基氯苯。通过酶反应得出结果:DsmH2只能降解6-氯龙胆酸,因此DsmH2可能是专门参与麦草畏代谢中3,6-二氯龙胆酸的降解的。
实施例3脱氯酶在菌株Ndbn-20中的生理功能的验证
为验证脱氯酶在菌株Ndbn-20中的生理功能,本发明构建了dsmH2插入突变载体,是将还原脱氯酶基因中间的大约509bp的dsmH2’的片段,插入pJQ200SK的PstI和BamHI酶切位点之间所得。
以正向引物:5’-CTTGATATCGAATTCCTGCAGTTGATGAAGCTGGAGCATACGCGGC-3’(SEQID NO.5),反向引物:5’-GCTCTAGAACTAGTGGATCCGTCGTCCCATAGCCGGGCAAAATTC-3’(SEQ IDNO.6),扩增出dsmH2’。
将插入突变的载体pJQ200SK采用PstI和BamHI进行双酶切,构建载体的方法见实施例2表达载体的构建。将构建好的载体转化进入DH5α中。
3.2插入突变
将供体菌DH5α(pJQdsmH2)、受体菌Ndbn-20、辅助菌PRK600分别接入含有相应抗生素的LB液体培养基中,培养至对数期,离心后用无菌水重悬菌体按1:2:1的体积比在离心管中混合均匀。将无菌滤膜放置在无抗性的LB平板上,随后吸取混合菌液200μL加至滤膜上,30℃静置培养2天后,用液体LB洗下滤膜上的菌体,震荡混匀,取100μL菌液涂布于选择性抗性LB平板(Str和Gm)上。培养4天挑取转入质粒的接合子在Gm和Sm双抗平板上划线纯化以备后续的降解功能验证试验。
通过PCR验证,得到插入突变成功的突变菌株Ndbn-20ΔdsmH2,进行降解3,6-DCGA和麦草畏的实验,实验结果证明Ndbn-20ΔdsmH2不能降解3,6-DCGA,而且Ndbn-20ΔdsmH2降解麦草畏的速率下降,并且有3,6-DCGA积累(见图7)。
序列表
<110> 南京农业大学
北京大北农生物技术有限公司
<120> 麦草畏中间产物3,6-二氯龙胆酸脱氯酶DsmH2及其编码基因的应用
<160> 6
<170> SIPOSequenceListing 1.0
<210> 1
<211> 741
<212> DNA
<213> Ndbn-20菌株(Sphingomonas sp. Ndbn-20)
<400> 1
atgctcgaac tctatcatga ctggcggtcc ttctgctcga tcaaggtgag gctttgcctc 60
gccgaaaaac agctcccttg ggaaagccgg ttcgtcgatt tgatgaagct ggagcatacg 120
cggccggaat atacccggct caatcccaat ggggtcgtgc ccaccctggt gcacaatggt 180
gttccgatca tcgaatccac gatcatcaac gaatatctgg aggaggtatt cccggagata 240
tcgctggtcc ccagcgatcc ggtcgagcgt gcgagaatgc gcgcctgggt gaagttcgag 300
gatgacgtcc tgcatccgtc gatacgcccg gcaaccttca cgctgatgat gagtcaggaa 360
ctggcaaaat tgtcggatgt cgaactggat gagcaactgg caaaacatcc caaccagcag 420
cgcgcggaag aatatcggat tgctgcacgc tcgcccgtcg atcatgctgc ggtcgaggag 480
gcgaaggtca agatgagcaa ggcgctggat cggctggaaa agcagctcga caccaccccc 540
tatctcgccg gtgacagcta ttcgctcgcc gatgttgcgg cagcgccctt tgtcgatcgg 600
ctggaagagt tgaattttgc ccggctatgg gacgaccggc ccagcctgag cgcctggatc 660
gctcggttga agtcgcgtcc ttctttcagc gaggcggtgc cccgcagaga ccagcgcttc 720
gctgcggccg tcatcgcctg a 741
<210> 2
<211> 246
<212> PRT
<213> Ndbn-20菌株(Sphingomonas sp. Ndbn-20)
<400> 2
Met Leu Glu Leu Tyr His Asp Trp Arg Ser Phe Cys Ser Ile Lys Val
1 5 10 15
Arg Leu Cys Leu Ala Glu Lys Gln Leu Pro Trp Glu Ser Arg Phe Val
20 25 30
Asp Leu Met Lys Leu Glu His Thr Arg Pro Glu Tyr Thr Arg Leu Asn
35 40 45
Pro Asn Gly Val Val Pro Thr Leu Val His Asn Gly Val Pro Ile Ile
50 55 60
Glu Ser Thr Ile Ile Asn Glu Tyr Leu Glu Glu Val Phe Pro Glu Ile
65 70 75 80
Ser Leu Val Pro Ser Asp Pro Val Glu Arg Ala Arg Met Arg Ala Trp
85 90 95
Val Lys Phe Glu Asp Asp Val Leu His Pro Ser Ile Arg Pro Ala Thr
100 105 110
Phe Thr Leu Met Met Ser Gln Glu Leu Ala Lys Leu Ser Asp Val Glu
115 120 125
Leu Asp Glu Gln Leu Ala Lys His Pro Asn Gln Gln Arg Ala Glu Glu
130 135 140
Tyr Arg Ile Ala Ala Arg Ser Pro Val Asp His Ala Ala Val Glu Glu
145 150 155 160
Ala Lys Val Lys Met Ser Lys Ala Leu Asp Arg Leu Glu Lys Gln Leu
165 170 175
Asp Thr Thr Pro Tyr Leu Ala Gly Asp Ser Tyr Ser Leu Ala Asp Val
180 185 190
Ala Ala Ala Pro Phe Val Asp Arg Leu Glu Glu Leu Asn Phe Ala Arg
195 200 205
Leu Trp Asp Asp Arg Pro Ser Leu Ser Ala Trp Ile Ala Arg Leu Lys
210 215 220
Ser Arg Pro Ser Phe Ser Glu Ala Val Pro Arg Arg Asp Gln Arg Phe
225 230 235 240
Ala Ala Ala Val Ile Ala
245
<210> 3
<211> 45
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 3
taagaaggag atatacatat gacccatctg gacctgtaca attac 45
<210> 4
<211> 42
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 4
tggtggtggt gctcgaggat cccacccttc caattgggca tc 42
<210> 5
<211> 46
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 5
cttgatatcg aattcctgca gttgatgaag ctggagcata cgcggc 46
<210> 6
<211> 45
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 6
gctctagaac tagtggatcc gtcgtcccat agccgggcaa aattc 45
Claims (8)
1.一种3,6-二氯龙胆酸脱氯酶基因dsmH2,其核苷酸序列为SEQ ID NO.1。
2.权利要求1所述的3,6-二氯龙胆酸脱氯酶基因dsmH2所编码的3,6-二氯龙胆酸脱氯酶DsmH2,其氨基酸序列为 SEQ ID NO.2。
3.含有权利要求1所述的3,6-二氯龙胆酸脱氯酶基因dsmH2的重组表达载体。
4.根据权利要求3所述的重组表达载体,其特征在于是将权利要求1所述的3,6-二氯龙胆酸脱氯酶基因dsmH2分别插入pET-24b(+)的NdeI和XhoI位点之间所得。
5.含有权利要求1所述的3,6-二氯龙胆酸脱氯酶基因dsmH2的基因工程菌。
6.根据权利要求5所述的基因工程菌,其特征在于所述的基因工程菌的表达菌株为大肠杆菌BL21(DE3)。
7.权利要求2所述3,6-二氯龙胆酸脱氯酶DsmH2在降解3,6-二氯龙胆酸中的应用。
8.权利要求2所述3,6-二氯龙胆酸脱氯酶DsmH2在去除土壤、水体中3,6-二氯龙胆酸的应用。
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201810242125.3A CN108441503B (zh) | 2018-03-22 | 2018-03-22 | 麦草畏中间产物3,6-二氯龙胆酸脱氯酶DsmH2及其编码基因的应用 |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201810242125.3A CN108441503B (zh) | 2018-03-22 | 2018-03-22 | 麦草畏中间产物3,6-二氯龙胆酸脱氯酶DsmH2及其编码基因的应用 |
Publications (2)
Publication Number | Publication Date |
---|---|
CN108441503A CN108441503A (zh) | 2018-08-24 |
CN108441503B true CN108441503B (zh) | 2019-12-24 |
Family
ID=63196324
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201810242125.3A Expired - Fee Related CN108441503B (zh) | 2018-03-22 | 2018-03-22 | 麦草畏中间产物3,6-二氯龙胆酸脱氯酶DsmH2及其编码基因的应用 |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN108441503B (zh) |
Families Citing this family (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN109971773B (zh) * | 2019-03-29 | 2022-02-22 | 南阳师范学院 | 一种编码可降解3-氯龙胆酸的龙胆酸双加氧酶DsmI的基因dsmI及其应用 |
CN117286161B (zh) * | 2023-11-27 | 2024-03-19 | 南京农业大学三亚研究院 | 麦草畏厌氧降解中间产物3,6-二氯水杨酸脱羧酶CsaDC及其应用 |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN101649324A (zh) * | 2009-06-25 | 2010-02-17 | 南京农业大学 | 杀菌剂百菌清水解脱氯酶基因 |
-
2018
- 2018-03-22 CN CN201810242125.3A patent/CN108441503B/zh not_active Expired - Fee Related
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN101649324A (zh) * | 2009-06-25 | 2010-02-17 | 南京农业大学 | 杀菌剂百菌清水解脱氯酶基因 |
Non-Patent Citations (1)
Title |
---|
3,6-Dichlorosalicylate Catabolism Is Initiated by the DsmABC Cytochrome P450 Monooxygenase System in Rhizorhabdus dicambivorans Ndbn-20.;Na Li等;《Appl Environ Microbiol.》;20180131;第84卷(第4期);全文 * |
Also Published As
Publication number | Publication date |
---|---|
CN108441503A (zh) | 2018-08-24 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN107794271B (zh) | 一个龙胆酸双加氧酶及其编码基因和应用 | |
CN109971773B (zh) | 一种编码可降解3-氯龙胆酸的龙胆酸双加氧酶DsmI的基因dsmI及其应用 | |
EP3707270A1 (en) | A genetically modified bacillus subtilis strain, optimized vectors, and uses thereof | |
CN107760621B (zh) | 异菌脲降解菌、降解酶IpaH与其编码基因ipaH及其应用 | |
CN108441503B (zh) | 麦草畏中间产物3,6-二氯龙胆酸脱氯酶DsmH2及其编码基因的应用 | |
CN111574605B (zh) | 水稻基因OsLAT5在调节敌草快的吸收积累中的应用 | |
CN113481126A (zh) | 除草剂敌稗特异性降解菌株及降解酰胺酶基因和应用 | |
CN113462664B (zh) | 二苯醚类除草剂硝基还原酶基因dnrA及其硝基还原酶和应用 | |
WO2021073220A1 (zh) | 具有除草剂麦草畏降解功能的基因dicX4及其应用 | |
CN110055268B (zh) | 水解酶基因ameH及其编码的蛋白和应用 | |
CN108795955B (zh) | 一种硝基还原酶基因cnrB及其编码的蛋白和应用 | |
CN116286889A (zh) | 四氢叶酸依赖型麦草畏脱甲基酶基因dmt06及其应用 | |
CN111139255B (zh) | 一种敌稗酰胺酶基因pamD及其编码蛋白质和应用 | |
CN112760298B (zh) | 一种细胞色素p450bm3氧化酶突变体及其制备方法和应用 | |
CN111560055B (zh) | 水稻基因OsLAT3在调节敌草快的吸收累积中的应用 | |
CN107523580B (zh) | 一种卤代对羟基苯甲酸氧化脱羧酶基因odcA及其应用 | |
WO2016015668A1 (zh) | 氨基甲酸酯类农药降解酶CFH与其编码基因cfd以及二者的应用 | |
CN107619832B (zh) | 一种氯代硝基苯酚类化合物氧化还原酶基因簇cnpAB及其应用 | |
CN109439573B (zh) | 对s-敌草胺具有专一转化功能的菌株、酰胺水解酶、编码基因及其应用 | |
CA1338605C (en) | Gene encoding insecticidal protein and production of said protein using said gene | |
CN111607573A (zh) | 一种具有草甘膦降解活性的氨膦氧化还原酶及其应用 | |
CN107828803B (zh) | 3,6-二氯水杨酸5-羟基化酶基因dsmABC及其应用 | |
CN109112117B (zh) | 一种分离的二化螟cyp15c1基因及其编码蛋白 | |
CN110144337A (zh) | 一种昆虫解毒酶蛋白在降解有机磷农药中的应用 | |
CN114058633B (zh) | 水解酶基因strH及其编码的蛋白和应用 |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant | ||
CF01 | Termination of patent right due to non-payment of annual fee | ||
CF01 | Termination of patent right due to non-payment of annual fee |
Granted publication date: 20191224 |