CN101778952B - 使用寡核苷酸和显著缺乏5’-3’核酸外切酶活性的聚合酶抑制扩增 - Google Patents
使用寡核苷酸和显著缺乏5’-3’核酸外切酶活性的聚合酶抑制扩增 Download PDFInfo
- Publication number
- CN101778952B CN101778952B CN200880102467.XA CN200880102467A CN101778952B CN 101778952 B CN101778952 B CN 101778952B CN 200880102467 A CN200880102467 A CN 200880102467A CN 101778952 B CN101778952 B CN 101778952B
- Authority
- CN
- China
- Prior art keywords
- sequence
- blocking agent
- target
- oligonucleotides
- agent oligonucleotides
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US96408907P | 2007-08-08 | 2007-08-08 | |
| US60/964089 | 2007-08-08 | ||
| PCT/EP2008/006476 WO2009019008A1 (en) | 2007-08-08 | 2008-08-07 | Suppression of amplification using an oligonucleotide and a polymerase significantly lacking 5'-3' exonuclease activity |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CN101778952A CN101778952A (zh) | 2010-07-14 |
| CN101778952B true CN101778952B (zh) | 2016-05-25 |
Family
ID=39942715
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CN200880102467.XA Expired - Fee Related CN101778952B (zh) | 2007-08-08 | 2008-08-07 | 使用寡核苷酸和显著缺乏5’-3’核酸外切酶活性的聚合酶抑制扩增 |
Country Status (7)
| Country | Link |
|---|---|
| US (1) | US8071338B2 (cg-RX-API-DMAC7.html) |
| EP (1) | EP2173910B1 (cg-RX-API-DMAC7.html) |
| JP (1) | JP5524838B2 (cg-RX-API-DMAC7.html) |
| CN (1) | CN101778952B (cg-RX-API-DMAC7.html) |
| CA (1) | CA2693384C (cg-RX-API-DMAC7.html) |
| ES (1) | ES2562789T3 (cg-RX-API-DMAC7.html) |
| WO (1) | WO2009019008A1 (cg-RX-API-DMAC7.html) |
Families Citing this family (35)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2695264C (en) | 2007-08-01 | 2015-01-27 | Dana-Farber Cancer Institute | Enrichment of a target sequence |
| US8206929B2 (en) * | 2009-01-07 | 2012-06-26 | Roche Molecular Systems, Inc. | Nucleic acid amplification with allele-specific suppression of sequence variants |
| US20110129832A1 (en) | 2009-10-27 | 2011-06-02 | Swift Biosciences, Inc. | Polynucleotide Primers and Probes |
| EP2545189B1 (en) * | 2010-03-08 | 2018-01-10 | Dana-Farber Cancer Institute, Inc. | Full cold-pcr enrichment with reference blocking sequence |
| CN103080310A (zh) * | 2010-09-10 | 2013-05-01 | 三菱化学美迪恩斯株式会社 | 使用光的核酸的扩增抑制方法和高灵敏度的选择性核酸扩增方法 |
| EP3144396B1 (en) | 2010-10-27 | 2020-01-01 | President and Fellows of Harvard College | Methods of use of toehold hairpin primer |
| JP2014507950A (ja) * | 2011-02-28 | 2014-04-03 | トランスゲノミック,インク. | 混合個体群における標的dnaを配列決定するためのキットおよび方法 |
| US11130992B2 (en) | 2011-03-31 | 2021-09-28 | Dana-Farber Cancer Institute, Inc. | Methods and compositions to enable multiplex COLD-PCR |
| WO2012151328A2 (en) | 2011-05-02 | 2012-11-08 | President And Fellows Of Harvard College | Spatial sequestration of dynamic nucleic acid circuits |
| CN103635593B (zh) * | 2011-05-04 | 2018-03-20 | 生物概念股份有限公司 | 用于检测核酸序列变体的方法 |
| US9518292B2 (en) | 2011-05-26 | 2016-12-13 | Brandeis University | Methods for suppression PCR |
| US9617392B2 (en) | 2011-07-10 | 2017-04-11 | President And Fellows Of Harvard College | Compositions and methods for self-assembly of polymers with complementary macroscopic and microscopic scale units |
| KR102087062B1 (ko) | 2011-09-16 | 2020-03-11 | 렉소겐 게엠베하 | 핵산 전사 방법 |
| EP2570487A1 (en) | 2011-09-16 | 2013-03-20 | Lexogen GmbH | Nucleic acid transcription method |
| US9260714B2 (en) * | 2011-12-02 | 2016-02-16 | Roche Molecular Systems, Inc. | Suppression of non-specific amplification with high-homology oligonucleotides |
| US9133490B2 (en) | 2012-05-16 | 2015-09-15 | Transgenomic, Inc. | Step-up method for COLD-PCR enrichment |
| EP2992110B1 (en) * | 2013-04-29 | 2017-10-25 | QIAGEN Marseille S.A.S. | A method for dna amplification with a blocking oligonucleotide |
| CA2926722A1 (en) * | 2013-10-19 | 2015-04-23 | Trovagene, Inc. | Detecting mutations in disease over time |
| ES2861353T3 (es) * | 2014-05-19 | 2021-10-06 | Univ Rice William M | Amplificación específica de alelo utilizando una composición de oligonucleótidos cebadores no específicos de alelo y bloqueantes específicos de alelo solapantes |
| US12391985B2 (en) | 2014-08-07 | 2025-08-19 | Pharmassist Ltd | Method of determining PIK3CA mutational status in a sample |
| PT3198026T (pt) | 2014-08-07 | 2020-01-16 | Pharmassist Ltd | Método de determinação do estado mutacional de pik3ca numa amostra |
| HUE058219T2 (hu) | 2014-09-26 | 2022-07-28 | Janssen Pharmaceutica Nv | FGFR-mutánsgénpanel alkalmazása olyan rákbetegek azonosításában, akik FGFR-inhibitorral történõ kezelésre reszponzívak lesznek |
| US9909169B2 (en) * | 2014-12-17 | 2018-03-06 | Roche Molecular Systems, Inc. | Allele-specific amplification of nucleic acids using blocking oligonucleotides for wild type suppression |
| JP5813263B1 (ja) * | 2015-03-31 | 2015-11-17 | 日鉄住金環境株式会社 | 遺伝子変異の検出方法及びそれに用いる蛍光標識オリゴヌクレオチド |
| US9657353B2 (en) | 2015-06-26 | 2017-05-23 | Great Basin Scientific, Inc. | Specific detection of organisms derived from a sample |
| WO2017193025A1 (en) | 2016-05-06 | 2017-11-09 | William Marsh Rice University | Stoichiometric nucleic acid purification using randomer capture probe libraries |
| JP7106461B2 (ja) * | 2016-06-07 | 2022-07-26 | セファイド | 熱安定性ポリメラーゼ阻害剤組成物及び方法 |
| WO2018111835A1 (en) | 2016-12-12 | 2018-06-21 | Dana-Farber Cancer Institute, Inc. | Compositions and methods for molecular barcoding of dna molecules prior to mutation enrichment and/or mutation detection |
| WO2019023243A1 (en) | 2017-07-24 | 2019-01-31 | Dana-Farber Cancer Institute, Inc. | METHODS AND COMPOSITIONS FOR SELECTING AND AMPLIFYING DNA TARGETS IN A SINGLE REACTION MIXTURE |
| WO2019099420A1 (en) * | 2017-11-15 | 2019-05-23 | Yan Wang | A method for detecting multiple dna mutations and copy number variations |
| US12331350B2 (en) | 2018-02-20 | 2025-06-17 | William Marsh Rice University | Systems and methods for allele enrichment using multiplexed blocker displacement amplification |
| KR102589502B1 (ko) | 2018-07-19 | 2023-10-13 | 바이오피델리티 엘티디 | 개선된 폴리뉴클레오티드 서열 탐지 방법 |
| EP3899036A1 (en) * | 2018-12-17 | 2021-10-27 | Illumina Cambridge Limited | Primer oligonucleotide for sequencing |
| GB201919186D0 (en) | 2019-12-23 | 2020-02-05 | Biofidelity Ltd | Simplified polynucleotide sequence detection method |
| JP2024531713A (ja) * | 2021-09-13 | 2024-08-29 | ネクスジェン キャンサー ディテクション エルエルシー | 試料中の標的ポリヌクレオチドを検出するための方法 |
Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5849497A (en) * | 1997-04-03 | 1998-12-15 | The Research Foundation Of State University Of New York | Specific inhibition of the polymerase chain reaction using a non-extendable oligonucleotide blocker |
| WO1999061661A1 (fr) * | 1998-05-27 | 1999-12-02 | Bio Merieux | Procede d'amplification d'au moins une sequence nucleotidique particuliere et amorces de mise en oeuvre |
| WO2002086155A2 (en) * | 2001-04-24 | 2002-10-31 | Lion Bioscience Ag | Method for the preferential nucleic acid amplification of selected nucleic acid regions |
Family Cites Families (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2163393C (en) | 1994-11-30 | 2003-04-22 | Colleen Marie Nycz | Amplification and detection of mycobacteria nucleic acids |
| US5801155A (en) * | 1995-04-03 | 1998-09-01 | Epoch Pharmaceuticals, Inc. | Covalently linked oligonucleotide minor grove binder conjugates |
| JP2002534098A (ja) * | 1999-01-06 | 2002-10-15 | コーネル リサーチ ファンデーション インク. | ゲノムシークエンシングにおける単一ヌクレオチドの多型の加速度的な同定およびクローンの整列化 |
| GB0406863D0 (en) | 2004-03-26 | 2004-04-28 | Qiagen As | Nucleic acid sequencing |
| DK1794173T3 (da) | 2004-09-10 | 2010-10-25 | Human Genetic Signatures Pty | Amplifikationsblokker indeholdende interkalaterende nukleinsyrer (INA) indeholdende interkalaterende pseudonukleotider (IPN) |
-
2008
- 2008-08-05 US US12/186,311 patent/US8071338B2/en not_active Expired - Fee Related
- 2008-08-07 JP JP2010519376A patent/JP5524838B2/ja not_active Expired - Fee Related
- 2008-08-07 WO PCT/EP2008/006476 patent/WO2009019008A1/en not_active Ceased
- 2008-08-07 CA CA2693384A patent/CA2693384C/en not_active Expired - Fee Related
- 2008-08-07 ES ES08785392.5T patent/ES2562789T3/es active Active
- 2008-08-07 CN CN200880102467.XA patent/CN101778952B/zh not_active Expired - Fee Related
- 2008-08-07 EP EP08785392.5A patent/EP2173910B1/en not_active Not-in-force
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5849497A (en) * | 1997-04-03 | 1998-12-15 | The Research Foundation Of State University Of New York | Specific inhibition of the polymerase chain reaction using a non-extendable oligonucleotide blocker |
| WO1999061661A1 (fr) * | 1998-05-27 | 1999-12-02 | Bio Merieux | Procede d'amplification d'au moins une sequence nucleotidique particuliere et amorces de mise en oeuvre |
| WO2002086155A2 (en) * | 2001-04-24 | 2002-10-31 | Lion Bioscience Ag | Method for the preferential nucleic acid amplification of selected nucleic acid regions |
Non-Patent Citations (3)
| Title |
|---|
| Luo JD et al..Detection of rare mutant k-ras DNA in a single-tube reaction using peptide nucleic acid as both PCR clamp and sensor probe..《Nucleic Acids Research》.2006,第34卷(第2期), * |
| Patrick L Dominguez and Michael S Kolodney.Wild-type blocking polymerase chain reaction for detection of single nucleotide minority mutations from clinical specimens.《Oncogene》.2005,6830-6834. * |
| Seyama T et al..A novel blocker-PCR method for detection of rare mutant alleles in the presence of an excess amount of normal DNA..《Nucleic Acids Research》.1992,第20卷(第10期),2493-2496. * |
Also Published As
| Publication number | Publication date |
|---|---|
| EP2173910A1 (en) | 2010-04-14 |
| US8071338B2 (en) | 2011-12-06 |
| CA2693384C (en) | 2015-04-14 |
| CA2693384A1 (en) | 2009-02-12 |
| HK1146094A1 (zh) | 2011-05-13 |
| EP2173910B1 (en) | 2015-12-09 |
| JP2010535480A (ja) | 2010-11-25 |
| WO2009019008A1 (en) | 2009-02-12 |
| JP5524838B2 (ja) | 2014-06-18 |
| US20090053720A1 (en) | 2009-02-26 |
| CN101778952A (zh) | 2010-07-14 |
| ES2562789T3 (es) | 2016-03-08 |
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Granted publication date: 20160525 Termination date: 20190807 |