CA2924752C - Method for determining the presence, absence, number or position(s) of one or more post-translational modifications (ptms) in a peptide, polypeptide or protein - Google Patents

Method for determining the presence, absence, number or position(s) of one or more post-translational modifications (ptms) in a peptide, polypeptide or protein Download PDF

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Publication number
CA2924752C
CA2924752C CA2924752A CA2924752A CA2924752C CA 2924752 C CA2924752 C CA 2924752C CA 2924752 A CA2924752 A CA 2924752A CA 2924752 A CA2924752 A CA 2924752A CA 2924752 C CA2924752 C CA 2924752C
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Prior art keywords
protein
pore
polypeptide
peptide
seq
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CA2924752A
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English (en)
French (fr)
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CA2924752A1 (en
Inventor
Hagan Bayley
David RODRIGUEZ-LARREA
Christian Bech ROSEN
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Oxford University Innovation Ltd
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Oxford University Innovation Ltd
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N15/00Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
    • G01N15/10Investigating individual particles
    • G01N15/1031Investigating individual particles by measuring electrical or magnetic effects
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/483Physical analysis of biological material
    • G01N33/487Physical analysis of biological material of liquid biological material
    • G01N33/48707Physical analysis of biological material of liquid biological material by electrical means
    • G01N33/48721Investigating individual macromolecules, e.g. by translocation through nanopores
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6842Proteomic analysis of subsets of protein mixtures with reduced complexity, e.g. membrane proteins, phosphoproteins, organelle proteins
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2440/00Post-translational modifications [PTMs] in chemical analysis of biological material
    • G01N2440/10Post-translational modifications [PTMs] in chemical analysis of biological material acylation, e.g. acetylation, formylation, lipoylation, myristoylation, palmitoylation
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Biomedical Technology (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Biophysics (AREA)
  • Pathology (AREA)
  • General Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Analytical Chemistry (AREA)
  • Medicinal Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Food Science & Technology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Nanotechnology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Microbiology (AREA)
  • Cell Biology (AREA)
  • Biotechnology (AREA)
  • Dispersion Chemistry (AREA)
  • Epidemiology (AREA)
  • Animal Behavior & Ethology (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Peptides Or Proteins (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2924752A 2013-09-23 2014-09-22 Method for determining the presence, absence, number or position(s) of one or more post-translational modifications (ptms) in a peptide, polypeptide or protein Active CA2924752C (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
GBGB1316849.7A GB201316849D0 (en) 2013-09-23 2013-09-23 Method
GB1316849.7 2013-09-23
US201361896933P 2013-10-29 2013-10-29
US61/896,933 2013-10-29
PCT/GB2014/052873 WO2015040423A1 (en) 2013-09-23 2014-09-22 Method

Publications (2)

Publication Number Publication Date
CA2924752A1 CA2924752A1 (en) 2015-03-26
CA2924752C true CA2924752C (en) 2022-11-29

Family

ID=49553252

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2924752A Active CA2924752C (en) 2013-09-23 2014-09-22 Method for determining the presence, absence, number or position(s) of one or more post-translational modifications (ptms) in a peptide, polypeptide or protein

Country Status (8)

Country Link
US (2) US10712254B2 (enExample)
EP (1) EP3049814B1 (enExample)
JP (1) JP6707453B2 (enExample)
CN (1) CN105765387B (enExample)
AU (1) AU2014322867B2 (enExample)
CA (1) CA2924752C (enExample)
GB (1) GB201316849D0 (enExample)
WO (1) WO2015040423A1 (enExample)

Families Citing this family (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB201316849D0 (en) * 2013-09-23 2013-11-06 Isis Innovation Method
GB201614455D0 (en) * 2016-08-24 2016-10-05 Univ Oxford Innovation Ltd Biomarkers
BR112021004675A2 (pt) 2018-09-11 2021-06-01 Rijksuniversiteit Groningen nanoporos biológicos com diâmetros de poros ajustáveis e usos dos mesmos como ferramentas analíticas
CN109300501B (zh) * 2018-09-20 2021-02-02 国家卫生健康委科学技术研究所 蛋白质三维结构预测方法及用其构建的预测云平台
CA3134796A1 (en) * 2019-04-09 2020-10-15 Oxford Nanopore Technologies Limited Pore
CN112147185B (zh) * 2019-06-29 2022-07-01 清华大学 一种控制多肽穿过纳米孔速度的方法及其应用
BR112022009402A2 (pt) * 2019-11-19 2022-08-09 Univ Groningen Nanoporos artificiais e usos e métodos relacionados com os mesmos
CN118011004A (zh) * 2019-12-02 2024-05-10 牛津纳米孔科技公开有限公司 使用纳米孔表征靶多肽的方法
NL2024579B1 (en) * 2019-12-24 2021-09-06 Univ Delft Tech Protein and peptide fingerprinting and sequencing by nanopore translocation of peptide-oligonucleotide complexes
CN112480204A (zh) * 2020-04-13 2021-03-12 南京大学 一种采用Aerolysin纳米孔道的蛋白质/多肽测序方法
IL320502A (en) 2022-10-28 2025-06-01 Univ Groningen Nanopore-based protein efflux
WO2024165853A1 (en) 2023-02-07 2024-08-15 Oxford University Innovation Limited Method of characterising a peptide, polypeptide or protein using a nanopore
WO2025003492A1 (en) 2023-06-30 2025-01-02 Ecole Polytechnique Federale De Lausanne (Epfl) Uses of aerolysin nanopores

Family Cites Families (20)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6267872B1 (en) 1998-11-06 2001-07-31 The Regents Of The University Of California Miniature support for thin films containing single channels or nanopores and methods for using same
US7744816B2 (en) * 2002-05-01 2010-06-29 Intel Corporation Methods and device for biomolecule characterization
US8278055B2 (en) * 2002-05-01 2012-10-02 Intel Corporation Methods and device for analyte characterization
GB0505971D0 (en) 2005-03-23 2005-04-27 Isis Innovation Delivery of molecules to a lipid bilayer
GB0523282D0 (en) 2005-11-15 2005-12-21 Isis Innovation Methods using pores
NZ579083A (en) 2007-02-20 2012-07-27 Oxford Nanopore Tech Ltd Lipid bilayer sensor system
GB2453377A (en) 2007-10-05 2009-04-08 Isis Innovation Transmembrane protein pores and molecular adapters therefore.
GB0724736D0 (en) 2007-12-19 2008-01-30 Oxford Nanolabs Ltd Formation of layers of amphiphilic molecules
US9447152B2 (en) 2008-07-07 2016-09-20 Oxford Nanopore Technologies Limited Base-detecting pore
US20110229877A1 (en) 2008-07-07 2011-09-22 Oxford Nanopore Technologies Limited Enzyme-pore constructs
GB0820927D0 (en) * 2008-11-14 2008-12-24 Isis Innovation Method
CA2750874A1 (en) 2009-01-30 2010-08-05 Oxford Nanopore Technologies Limited Hybridization linkers
GB0905140D0 (en) 2009-03-25 2009-05-06 Isis Innovation Method
BR112012013074B1 (pt) 2009-12-01 2018-09-18 Oxford Nanopore Technologies Limited instrumento de análise e módulo para realizar análise bioquímica, e, método para operar um instrumento de análise para realizar análise bioquímica
AU2012264497B2 (en) * 2011-05-27 2017-06-15 Oxford Nanopore Technologies Limited Coupling method
US10139417B2 (en) * 2012-02-01 2018-11-27 Arizona Board Of Regents On Behalf Of Arizona State University Systems, apparatuses and methods for reading an amino acid sequence
AU2013220156B2 (en) * 2012-02-15 2018-08-09 Oxford Nanopore Technologies Limited Aptamer method
JP6312607B2 (ja) * 2012-02-16 2018-04-18 ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア 酵素仲介タンパク質トランスロケーションのためのナノポアセンサー
NL2009191C2 (en) 2012-07-16 2014-01-20 Univ Delft Tech Single molecule protein sequencing.
GB201316849D0 (en) * 2013-09-23 2013-11-06 Isis Innovation Method

Also Published As

Publication number Publication date
JP2016532125A (ja) 2016-10-13
AU2014322867A1 (en) 2016-03-31
AU2014322867B2 (en) 2020-10-08
WO2015040423A1 (en) 2015-03-26
CN105765387B (zh) 2019-10-18
GB201316849D0 (en) 2013-11-06
US20210096053A1 (en) 2021-04-01
US11592382B2 (en) 2023-02-28
CA2924752A1 (en) 2015-03-26
EP3049814B1 (en) 2021-03-17
US20160209317A1 (en) 2016-07-21
CN105765387A (zh) 2016-07-13
JP6707453B2 (ja) 2020-06-10
EP3049814A1 (en) 2016-08-03
US10712254B2 (en) 2020-07-14

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