CA2421078A1 - Procede servant a determiner des alleles - Google Patents

Procede servant a determiner des alleles Download PDF

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Publication number
CA2421078A1
CA2421078A1 CA002421078A CA2421078A CA2421078A1 CA 2421078 A1 CA2421078 A1 CA 2421078A1 CA 002421078 A CA002421078 A CA 002421078A CA 2421078 A CA2421078 A CA 2421078A CA 2421078 A1 CA2421078 A1 CA 2421078A1
Authority
CA
Canada
Prior art keywords
primer
nucleic acid
heterosequence
site
hybridized
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002421078A
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English (en)
Inventor
Xiangjun Liu
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Life Technologies AS
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Publication of CA2421078A1 publication Critical patent/CA2421078A1/fr
Abandoned legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6858—Allele-specific amplification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

L'invention concerne des procédés et des trousses servant à séparer et à identifier des allèles et, par conséquent, l'haplotype, dans des spécimens d'ADN génomique. Ce procédé consiste généralement à effectuer l'hybridation d'amorces spécifiques pour des sites polymorphes à l'intérieur de ces allèles aux spécimens d'ADN, à prolonger ces amorces par un ou plusieurs acides nucléiques, à séparer les amorces prolongées et à identifier les allèles au moyen de l'amorce prolongée. Ce procédé permet également d'effectuer la ligation de deux amorces, leur séparation et leur utilisation ultérieure afin d'identifier l'allèle ciblé. Ce procédé permet, de plus, d'utiliser une autre amorce en tant que site bloquant pour l'extension de la première amorce, de façon à répliquer et à identifier un segment d'ADN comprenant un site polymorphe. On peut marquer les amorces prolongées ou non, de manière à pouvoir séparer et/ou identifier l'amorce sans difficultés.
CA002421078A 2000-08-30 2001-08-30 Procede servant a determiner des alleles Abandoned CA2421078A1 (fr)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US22899400P 2000-08-30 2000-08-30
US60/228,994 2000-08-30
PCT/US2001/041956 WO2002018659A2 (fr) 2000-08-30 2001-08-30 Procede servant a determiner des alleles

Publications (1)

Publication Number Publication Date
CA2421078A1 true CA2421078A1 (fr) 2002-03-07

Family

ID=22859388

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002421078A Abandoned CA2421078A1 (fr) 2000-08-30 2001-08-30 Procede servant a determiner des alleles

Country Status (5)

Country Link
JP (1) JP2004520812A (fr)
CN (1) CN1293204C (fr)
AU (1) AU2001289177A1 (fr)
CA (1) CA2421078A1 (fr)
WO (1) WO2002018659A2 (fr)

Families Citing this family (20)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2002343573A1 (en) * 2001-10-24 2003-05-06 Singulex, Inc. Methods for detecting genetic haplotypes by interaction with probes
HU230406B1 (hu) 2001-11-13 2016-04-28 The Trustees Of The University Of Pennsylvania Eljárás adeno-asszociált vírus(AAV)szekvenciák detektálására és/vagy azonosítására és az azzal azonosított új szekvenciák izolálására
EP3339430A1 (fr) 2001-12-17 2018-06-27 The Trustees of The University of Pennsylvania Séquences de sérotype 9 de virus adéno associé, vecteurs les contenant et leurs utilisations
AU2002360291A1 (en) 2001-12-17 2003-06-30 The Trustees Of The University Of Pennsylvania Adeno-associated virus (aav) serotype 8 sequences
JP3752466B2 (ja) 2002-04-24 2006-03-08 株式会社日立製作所 遺伝子検査方法
EP1536021A1 (fr) * 2003-11-27 2005-06-01 Consortium National de Recherche en Genomique (CNRG) Méthode pour le typage de HLA
GB0406863D0 (en) * 2004-03-26 2004-04-28 Qiagen As Nucleic acid sequencing
US20050282195A1 (en) * 2004-04-30 2005-12-22 Applera Corporation Compositions, methods, and kits for (MIS)ligating oligonucleotides
GB0600116D0 (en) * 2006-01-05 2006-02-15 Univ Cardiff Allele-specific sequencing
CN107090468B (zh) * 2007-08-07 2021-07-09 孟山都技术公司 用于选择南方根结线虫抗性大豆植物的方法和组合物
CN103911428B (zh) * 2009-03-27 2016-02-24 生命技术公司 用于检测等位基因变体的方法、组合物和试剂盒
JP2011072222A (ja) * 2009-09-29 2011-04-14 Kitasato Otsuka Biomedical Assay Kenkyusho:Kk 標的核酸の検出方法
KR101550489B1 (ko) 2010-03-08 2015-09-07 다나-파버 캔서 인스티튜트 인크. 기준 차단 서열을 이용한 완전 ｃｏｌｄ－ｐｃｒ 풍부화
AU2012223438A1 (en) * 2011-02-28 2013-09-26 Transgenomic, Inc Kit and method for sequencing a target DNA in a mixed population
EP3333269B1 (fr) 2011-03-31 2021-05-05 Dana-Farber Cancer Institute, Inc. Procédés permettant d'activer un multiplexage froid-pcr
US9133490B2 (en) 2012-05-16 2015-09-15 Transgenomic, Inc. Step-up method for COLD-PCR enrichment
WO2015013166A1 (fr) 2013-07-24 2015-01-29 Dana-Farber Cancer Institute, Inc. Procédés et compositions pour permettre l'enrichissement d'allèles d'adn mineurs par limitation du temps de dénaturation en pcr ou permettre simplement l'enrichissement d'allèles d'adn mineurs par limitation du temps de dénaturation en pcr
MX2016011686A (es) 2014-03-09 2016-11-07 Univ Pennsylvania Composiciones utiles en el tratamiento de deficiencia de la ornitina transcarbamilasa (otc).
EP3551756A4 (fr) 2016-12-12 2020-07-15 Dana Farber Cancer Institute, Inc. Compositions et procédés pour le codage par code-barres moléculaire de molécules d'adn avant l'enrichissement des mutations et/ou la détection des mutations
WO2019023243A1 (fr) 2017-07-24 2019-01-31 Dana-Farber Cancer Institute, Inc. Procédés et compositions pour sélectionner et amplifier des cibles d'adn dans un mélange de réaction unique

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
ES2136059T5 (es) * 1989-02-13 2005-02-16 Geneco Pty. Ltd. Deteccion de una secuencia de acidos nucleicos o de un cambio en la misma.
US5468611A (en) * 1990-06-27 1995-11-21 The Blood Center Research Foundation, Inc. Method for HLA typing
JPH06509946A (ja) * 1992-06-17 1994-11-10 シティ・オブ・ホープ 核酸を検出し識別する方法
GB9503808D0 (en) * 1995-02-24 1995-04-12 Univ Nottingham Detection assay
EP2332958B1 (fr) * 1996-02-09 2016-04-20 Cornell Research Foundation, Inc. Détection de différences entre séquences d'acide nucléique faisant appel à la réaction de détection par ligase et à des réseaux adressables
EP0958378A2 (fr) * 1996-09-24 1999-11-24 Rapigene, Inc. Compositions et procedes pour l'augmentation de la specificite d'hybridation

Also Published As

Publication number Publication date
CN1293204C (zh) 2007-01-03
JP2004520812A (ja) 2004-07-15
WO2002018659A3 (fr) 2003-07-31
AU2001289177A1 (en) 2002-03-13
CN1501982A (zh) 2004-06-02
WO2002018659A2 (fr) 2002-03-07

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