AU730865B2 - Assaying nucleotides in solution using a fluorescent intensity quenching effect - Google Patents
Assaying nucleotides in solution using a fluorescent intensity quenching effect Download PDFInfo
- Publication number
- AU730865B2 AU730865B2 AU80302/98A AU8030298A AU730865B2 AU 730865 B2 AU730865 B2 AU 730865B2 AU 80302/98 A AU80302/98 A AU 80302/98A AU 8030298 A AU8030298 A AU 8030298A AU 730865 B2 AU730865 B2 AU 730865B2
- Authority
- AU
- Australia
- Prior art keywords
- nucleotide sequence
- detecting
- probe
- liquid medium
- sequence according
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6832—Enhancement of hybridisation reaction
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S435/00—Chemistry: molecular biology and microbiology
- Y10S435/81—Packaged device or kit
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US08/886,280 US5846729A (en) | 1997-02-27 | 1997-07-01 | Assaying nucleotides in solution using a fluorescent intensity quenching effect |
| US08/886280 | 1997-07-01 | ||
| PCT/IB1998/001016 WO1999001578A1 (en) | 1997-07-01 | 1998-06-30 | Assaying nucleotides in solution using a fluorescent intensity quenching effect |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU8030298A AU8030298A (en) | 1999-01-25 |
| AU730865B2 true AU730865B2 (en) | 2001-03-15 |
Family
ID=25388774
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU80302/98A Ceased AU730865B2 (en) | 1997-07-01 | 1998-06-30 | Assaying nucleotides in solution using a fluorescent intensity quenching effect |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US5846729A (enEXAMPLES) |
| EP (1) | EP1002125A1 (enEXAMPLES) |
| JP (1) | JP2001510681A (enEXAMPLES) |
| AR (1) | AR016125A1 (enEXAMPLES) |
| AU (1) | AU730865B2 (enEXAMPLES) |
| CA (1) | CA2295333C (enEXAMPLES) |
| IN (1) | IN189178B (enEXAMPLES) |
| TW (1) | TWI235765B (enEXAMPLES) |
| WO (1) | WO1999001578A1 (enEXAMPLES) |
| ZA (1) | ZA985758B (enEXAMPLES) |
Families Citing this family (69)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6555692B1 (en) * | 1996-02-26 | 2003-04-29 | California Institute Of Technology | Preparation and use of bifunctional molecules having DNA sequence binding specificity |
| SE9601318D0 (sv) * | 1996-04-04 | 1996-04-04 | Pharmacia Biosensor Ab | Method for nucleic acid analysis |
| US6251591B1 (en) * | 1997-02-27 | 2001-06-26 | Lorne Park Research, Inc. | Quantitative method for detecting nucleotide concentration |
| US6046004A (en) * | 1997-02-27 | 2000-04-04 | Lorne Park Research, Inc. | Solution hybridization of nucleic acids with antisense probes having modified backbones |
| DE69841849D1 (de) * | 1997-10-27 | 2010-09-30 | Boston Probes Inc | Sich auf "pna molecular beacons" beziehende verfahren, testsätze und zusammensetzungen |
| US6485901B1 (en) | 1997-10-27 | 2002-11-26 | Boston Probes, Inc. | Methods, kits and compositions pertaining to linear beacons |
| WO1999049293A2 (en) | 1998-03-24 | 1999-09-30 | Boston Probes, Inc. | Methods, kits and compositions pertaining to detection complexes |
| US6656692B2 (en) * | 1999-12-21 | 2003-12-02 | Ingeneus Corporation | Parallel or antiparallel, homologous or complementary binding of nucleic acids or analogues thereof to form duplex, triplex or quadruplex complexes |
| US6858390B2 (en) | 1998-12-31 | 2005-02-22 | Ingeneus Corporation | Aptamers containing sequences of nucleic acid or nucleic acid analogues bound homologously, or in novel complexes |
| US6403313B1 (en) * | 1999-12-21 | 2002-06-11 | Ingeneus Corporation | Fluorescent intensity assay for duplex and triplex nucleic acid hybridization solution utilizing fluorescent intercalators |
| US6420115B1 (en) | 1999-12-21 | 2002-07-16 | Ingeneus Corporation | Cation mediated triplex hybridization assay |
| US6294333B1 (en) * | 1998-12-31 | 2001-09-25 | Ingeneus Corp. | Fluorescent intensity assay for protein or peptide binding to nucleic acids |
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| NZ528967A (en) | 1999-06-22 | 2005-03-24 | Invitrogen Corp | Improved primers and methods for the amplification and discrimination of nucleic acids |
| US6645733B1 (en) | 1999-06-25 | 2003-11-11 | Ingeneus Corporation | Fluorescent intensity method for assaying binding between proteins or peptides |
| US6830902B1 (en) * | 1999-07-02 | 2004-12-14 | Invitrogen Corporation | Compositions and methods for enhanced sensitivity and specificity of nucleic acid synthesis |
| WO2001038585A2 (en) * | 1999-11-24 | 2001-05-31 | The Regents Of The University Of California | Polymer arrays and methods of using labeled probe molecules to identify and quantify target molecule expression |
| US7052844B2 (en) * | 1999-12-21 | 2006-05-30 | Ingeneus, Inc. | Purification of DS-DNA using heteropolymeric capture probes and a triplex, quadruplex or homologous duplex binding mechanism |
| US6927027B2 (en) | 1999-12-21 | 2005-08-09 | Ingeneus Corporation | Nucleic acid multiplex formation |
| US6924108B2 (en) * | 1999-12-21 | 2005-08-02 | Ingeneus Corporation | Nucleic acid binding enhancement by conjugation with nucleotides, nucleosides, bases and/or their analogues |
| US20030181412A1 (en) * | 1999-12-21 | 2003-09-25 | Ingeneus Corporation | Method for modifying transcription and/or translation in an organism for therapeutic, prophylactic and/or analytic uses |
| US6911536B1 (en) | 1999-12-21 | 2005-06-28 | Ingeneus Corporation | Triplex and quadruplex catalytic hybridization |
| US7309569B2 (en) * | 1999-12-21 | 2007-12-18 | Ingeneus, Inc. | Parallel or antiparallel, homologous or complementary binding of nucleic acids or analogues thereof to form duplex, triplex or quadruplex complexes |
| US20030170659A1 (en) * | 2000-01-24 | 2003-09-11 | Ingeneus Corporation | Electrical treatment of binding media to encourage, discourage and/or study biopolymer binding |
| US6613524B1 (en) | 2000-01-24 | 2003-09-02 | Ingeneus Corporation | Amperometric affinity assay and electrically stimulated complexes of nucleic acids |
| US6982147B2 (en) * | 2000-01-24 | 2006-01-03 | Ingeneus Corporation | Apparatus for assaying biopolymer binding by means of multiple measurements under varied conditions |
| US6265170B1 (en) | 2000-01-24 | 2001-07-24 | Ingeneus Corporation | Homogenous assay of duplex of triplex hybridization by means of multiple measurements under varied conditions |
| US7220541B2 (en) | 2000-01-24 | 2007-05-22 | Ingeneus, Inc. | Homogeneous assay of biopolymer binding by means of multiple measurements under varied conditions |
| US6936443B2 (en) * | 2000-04-03 | 2005-08-30 | Cytyc Corporation | Detection and typing of human papillomavirus using PNA probes |
| AU2001256976A1 (en) * | 2000-04-03 | 2001-10-15 | Cytyc Corporation | Detection and typing of human papillomavirus using pna probes |
| US20060073530A1 (en) * | 2001-08-15 | 2006-04-06 | Olaf Schneewind | Methods and compositions involving sortase B |
| US20030165859A1 (en) * | 2001-10-23 | 2003-09-04 | Invitrogen Corporation | Primers and methods for the detection and discrimination of nucleic acids |
| DE10155031A1 (de) * | 2001-11-09 | 2003-05-28 | Friz Biochem Gmbh | Fluoreszenz-Quenchen zur Detektion von Ligat-Ligand Assoziationsereignissen in elektrischen Feldern |
| US20060009409A1 (en) | 2002-02-01 | 2006-01-12 | Woolf Tod M | Double-stranded oligonucleotides |
| WO2003064621A2 (en) | 2002-02-01 | 2003-08-07 | Ambion, Inc. | HIGH POTENCY siRNAS FOR REDUCING THE EXPRESSION OF TARGET GENES |
| ATE556714T1 (de) | 2002-02-01 | 2012-05-15 | Life Technologies Corp | Doppelsträngige oligonukleotide |
| US6818420B2 (en) | 2002-02-27 | 2004-11-16 | Biosource International, Inc. | Methods of using FET labeled oligonucleotides that include a 3′-5′ exonuclease resistant quencher domain and compositions for practicing the same |
| CA2494844C (en) | 2002-08-12 | 2013-10-15 | David Kirn | Methods and compositions concerning poxviruses and cancer |
| US20040180345A1 (en) * | 2003-03-14 | 2004-09-16 | Ingeneus Corporation | Pre-incubation method to improve signal/noise ratio of nucleic acid assays |
| ES2345993T3 (es) | 2004-09-14 | 2010-10-07 | The Regents Of The University Of Colorado, A Body Corporate | Metodo para el tratamiento con bucindolol basado en direccionamiento genetico. |
| US8486622B2 (en) * | 2004-09-24 | 2013-07-16 | Ingeneus Inc. | Genomic assay |
| JP2006254784A (ja) * | 2005-03-17 | 2006-09-28 | Institute Of Physical & Chemical Research | プライマーダイマーからの非特異的増幅を減少させる方法 |
| US8980246B2 (en) | 2005-09-07 | 2015-03-17 | Sillajen Biotherapeutics, Inc. | Oncolytic vaccinia virus cancer therapy |
| EP1933857A2 (en) | 2005-09-07 | 2008-06-25 | Jennerex Biotherapeutics ULC | Systemic treatment of metastatic and/or systemically-disseminated cancers using gm-csf-expressing poxviruses |
| DE602005003374T2 (de) * | 2005-10-17 | 2008-09-11 | Pls-Design Gmbh | Verfahren zur Bestimmung einer unbekannten PNS Seqenz und seine Verwendungen |
| CA2921063C (en) | 2006-09-15 | 2020-01-28 | Ottawa Hospital Research Institute | Oncolytic rhabdovirus |
| US8929630B2 (en) * | 2009-03-27 | 2015-01-06 | Life Technologies Corporation | Systems and methods for assessing images |
| WO2011008530A2 (en) | 2009-06-29 | 2011-01-20 | Luminex Corporation | Chimeric primers with hairpin conformations and methods of using same |
| US9409983B2 (en) | 2009-07-23 | 2016-08-09 | The Board Of Trustess Of The University Of Illinois | Methods and compositions involving PBEF inhibitors for lung inflammation conditions and diseases |
| US9512481B2 (en) | 2009-09-11 | 2016-12-06 | The Regents Of The University Of Colorado, A Body Corporate | Polymorphisms in the PDE3A gene |
| CA2774144C (en) | 2009-09-14 | 2018-02-13 | Jennerex, Inc. | Oncolytic vaccinia virus combination cancer therapy |
| JP6025255B2 (ja) | 2009-12-10 | 2016-11-16 | ターンストーン リミテッド パートナーシップ | 腫瘍退縮性ラブドウイルス |
| US20130131161A1 (en) | 2009-12-23 | 2013-05-23 | Michael R. Bristow | Methods and compositions for cardiovascular diseases and conditions |
| JP6121910B2 (ja) | 2011-01-04 | 2017-04-26 | シラジェン バイオセラピューティクス インコーポレイテッド | 腫瘍溶解性ワクシニアウイルスの投与による腫瘍抗原に対する抗体の生成および腫瘍特異的補体依存性細胞傷害の生成 |
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| CA2872045A1 (en) | 2011-06-08 | 2012-12-13 | Children's Hospital Of Eastern Ontario Research Institute Inc. | Compositions and methods for glioblastoma treatment |
| RU2483049C2 (ru) * | 2011-07-21 | 2013-05-27 | Открытое акционерное общество "Научно-исследовательский институт полимерных материалов" | Способ изготовления партии многошашечных зарядов твердого ракетного топлива |
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Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1992018560A1 (en) * | 1991-04-22 | 1992-10-29 | Takata Corporation | Surface-coated member |
| WO1994012665A1 (en) * | 1992-11-23 | 1994-06-09 | R-P Technologies, Inc. | Quantitative detection of macromolecules with fluorescent oligonucleotides |
Family Cites Families (18)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4220450A (en) * | 1978-04-05 | 1980-09-02 | Syva Company | Chemically induced fluorescence immunoassay |
| FR2558172B1 (fr) * | 1984-01-16 | 1986-06-13 | Inst Nat Sante Rech Med | Sonde contenant un acide nucleique modifie et reconnaissance par des anticorps specifiques et utilisation de cette sonde et de ces anticorps specifiques pour detecter et caracteriser une sequence d'adn homologue |
| US5217866A (en) * | 1985-03-15 | 1993-06-08 | Anti-Gene Development Group | Polynucleotide assay reagent and method |
| EP0232967B1 (en) * | 1986-01-10 | 1993-04-28 | Amoco Corporation | Competitive homogeneous assay |
| EP0533906A4 (en) * | 1991-04-11 | 1994-09-28 | Baxter Diagnostics Inc | Detection of dna/rna by fluorescence polarization |
| US5994056A (en) * | 1991-05-02 | 1999-11-30 | Roche Molecular Systems, Inc. | Homogeneous methods for nucleic acid amplification and detection |
| US5539082A (en) * | 1993-04-26 | 1996-07-23 | Nielsen; Peter E. | Peptide nucleic acids |
| US5332659A (en) * | 1992-04-09 | 1994-07-26 | The United States Of America As Represented By The Secretary Of The Navy | Light emission-or absorbance-based binding assays for polynucleic acids |
| DE4216949C2 (de) * | 1992-05-22 | 1997-07-24 | Christoph Prof Dr Dr Cremer | Nichtenzymatisches Verfahren zur In-situ-Hybridisierung bei spezifischen Proben |
| US5674698A (en) * | 1992-09-14 | 1997-10-07 | Sri International | Up-converting reporters for biological and other assays using laser excitation techniques |
| US5503980A (en) * | 1992-11-06 | 1996-04-02 | Trustees Of Boston University | Positional sequencing by hybridization |
| EP0599337B1 (en) * | 1992-11-27 | 2006-03-08 | Canon Kabushiki Kaisha | Method for detection of nucleic acid and probe therefor |
| US5538848A (en) * | 1994-11-16 | 1996-07-23 | Applied Biosystems Division, Perkin-Elmer Corp. | Method for detecting nucleic acid amplification using self-quenching fluorescence probe |
| US5723288A (en) * | 1994-05-06 | 1998-03-03 | The University Of North Carolina At Chapel Hill | Method of fluorescent detection of nucleic acids and cytoskeleton elements using bis-dicationic aryl furans, and kits useful therefor |
| US5747247A (en) * | 1994-07-25 | 1998-05-05 | The Regents Of The University Of California | Spectroscopic helicase assay |
| CA2219891C (en) * | 1995-05-05 | 2002-01-29 | The Perkin-Elmer Corporation | Methods and reagents for combined pcr amplification and hybridization probing assay |
| US20020012902A1 (en) * | 1995-10-06 | 2002-01-31 | Martin Fuchs | Methods and kit for hybridization analysis using peptide nucleic acid probes |
| CA2190430A1 (en) * | 1995-12-12 | 1997-06-13 | Margret Barbara Basinski | Method for measuring genetic messages |
-
1997
- 1997-07-01 US US08/886,280 patent/US5846729A/en not_active Expired - Lifetime
-
1998
- 1998-06-30 WO PCT/IB1998/001016 patent/WO1999001578A1/en not_active Application Discontinuation
- 1998-06-30 TW TW087110536A patent/TWI235765B/zh not_active IP Right Cessation
- 1998-06-30 IN IN1838DE1998 patent/IN189178B/en unknown
- 1998-06-30 AU AU80302/98A patent/AU730865B2/en not_active Ceased
- 1998-06-30 EP EP98928474A patent/EP1002125A1/en not_active Withdrawn
- 1998-06-30 JP JP2000501276A patent/JP2001510681A/ja active Pending
- 1998-06-30 CA CA002295333A patent/CA2295333C/en not_active Expired - Fee Related
- 1998-07-01 AR ARP980103211A patent/AR016125A1/es active IP Right Grant
- 1998-07-01 ZA ZA985758A patent/ZA985758B/xx unknown
Patent Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1992018560A1 (en) * | 1991-04-22 | 1992-10-29 | Takata Corporation | Surface-coated member |
| WO1994012665A1 (en) * | 1992-11-23 | 1994-06-09 | R-P Technologies, Inc. | Quantitative detection of macromolecules with fluorescent oligonucleotides |
Non-Patent Citations (1)
| Title |
|---|
| COOPER ET AL. BIOCHEM. 1990. 29:9261-9268 * |
Also Published As
| Publication number | Publication date |
|---|---|
| ZA985758B (en) | 1999-01-27 |
| TWI235765B (en) | 2005-07-11 |
| AU8030298A (en) | 1999-01-25 |
| CA2295333C (en) | 2005-03-01 |
| CA2295333A1 (en) | 1999-01-14 |
| AR016125A1 (es) | 2001-06-20 |
| EP1002125A1 (en) | 2000-05-24 |
| WO1999001578A1 (en) | 1999-01-14 |
| JP2001510681A (ja) | 2001-08-07 |
| IN189178B (enEXAMPLES) | 2003-01-04 |
| US5846729A (en) | 1998-12-08 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| FGA | Letters patent sealed or granted (standard patent) |