AU2022287983A1 - Systems and methods for analyzing biological samples - Google Patents

Systems and methods for analyzing biological samples Download PDF

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Publication number
AU2022287983A1
AU2022287983A1 AU2022287983A AU2022287983A AU2022287983A1 AU 2022287983 A1 AU2022287983 A1 AU 2022287983A1 AU 2022287983 A AU2022287983 A AU 2022287983A AU 2022287983 A AU2022287983 A AU 2022287983A AU 2022287983 A1 AU2022287983 A1 AU 2022287983A1
Authority
AU
Australia
Prior art keywords
nucleic acid
molecules
subset
cdna
derivatives
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
AU2022287983A
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English (en)
Inventor
Ali Agah
Pier Federico GHERARDINI
Tarun Kumar Khurana
Yir-Shyuan WU
Filiz Gorpe YASAR
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Cellanome Inc
Original Assignee
Cellanome Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Cellanome Inc filed Critical Cellanome Inc
Publication of AU2022287983A1 publication Critical patent/AU2022287983A1/en
Pending legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1096—Processes for the isolation, preparation or purification of DNA or RNA cDNA Synthesis; Subtracted cDNA library construction, e.g. RT, RT-PCR
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Biomedical Technology (AREA)
  • Immunology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Plant Pathology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
AU2022287983A 2021-06-11 2022-06-10 Systems and methods for analyzing biological samples Pending AU2022287983A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US202163209544P 2021-06-11 2021-06-11
US63/209,544 2021-06-11
PCT/US2022/033116 WO2022261507A1 (en) 2021-06-11 2022-06-10 Systems and methods for analyzing biological samples

Publications (1)

Publication Number Publication Date
AU2022287983A1 true AU2022287983A1 (en) 2023-12-14

Family

ID=84425364

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2022287983A Pending AU2022287983A1 (en) 2021-06-11 2022-06-10 Systems and methods for analyzing biological samples

Country Status (11)

Country Link
US (1) US20240301465A1 (cg-RX-API-DMAC7.html)
EP (1) EP4352286A4 (cg-RX-API-DMAC7.html)
JP (1) JP2024520804A (cg-RX-API-DMAC7.html)
KR (1) KR20240019808A (cg-RX-API-DMAC7.html)
CN (1) CN117813424A (cg-RX-API-DMAC7.html)
AU (1) AU2022287983A1 (cg-RX-API-DMAC7.html)
BR (1) BR112023025731A2 (cg-RX-API-DMAC7.html)
CA (1) CA3220725A1 (cg-RX-API-DMAC7.html)
IL (1) IL308886A (cg-RX-API-DMAC7.html)
MX (1) MX2023014290A (cg-RX-API-DMAC7.html)
WO (1) WO2022261507A1 (cg-RX-API-DMAC7.html)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US12576400B2 (en) 2021-01-08 2026-03-17 Cellanome, Inc. Methods for incubating and analyzing a cell in a compartment of a fluidic device
MX2023007842A (es) 2021-01-08 2023-09-19 Cellanome Inc Dispositivos y metodos para analizar muestras biologicas.
US12576399B2 (en) 2021-01-08 2026-03-17 Cellanome, Inc. Methods for imaging and analyzing a cell in a compartment of a fluidic device
US12661647B2 (en) 2022-03-22 2026-06-23 Cellanome, Inc. Methods for enclosing and analyzing a cell in a fluidic device
EP4558820A4 (en) * 2022-07-19 2026-07-15 Cellanome Inc SINGLE-CELL PROTEOMICS INVOLVING DEGRADABLE HYDROGELS
WO2024253995A1 (en) * 2023-06-09 2024-12-12 Illumina, Inc. Methods of sequencing dna using flow cells containing multiple surfaces
WO2025128916A1 (en) 2023-12-13 2025-06-19 Cellanome, Inc. Devices and methods for analyzing biological samples
WO2025231451A1 (en) * 2024-05-03 2025-11-06 Cellanome, Inc. Systems and methods for analysis of cells
WO2025229401A2 (en) * 2024-05-03 2025-11-06 Cellanome, Inc. Systems and methods for screening of biological components
WO2026103880A1 (zh) * 2024-11-15 2026-05-21 深圳华大智造科技股份有限公司 一种固体支持物及其用途

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US5766849A (en) * 1989-07-11 1998-06-16 Gen-Probe Incorporated Methods of amplifying nucleic acids using promoter-containing primer sequence
DK1907571T3 (en) * 2005-06-15 2017-08-21 Complete Genomics Inc NUCLEIC ACID ANALYSIS USING INCIDENTAL MIXTURES OF NON-OVERLAPPING FRAGMENTS
RU2008146089A (ru) * 2006-05-24 2010-05-27 Конинклейке Филипс Электроникс Н.В. (Nl) Твердая биосенсорная подложка с интегрированным регулированием температуры и способ ее изготовления
US20120028826A1 (en) * 2010-07-27 2012-02-02 Affymetrix, Inc. Methods and Compositions for Analysis of Nucleic Acids
GB201101621D0 (en) * 2011-01-31 2011-03-16 Olink Ab Method and product
CA2872915A1 (en) * 2012-05-09 2013-11-14 The Governors Of The University Of Alberta Solid gel amplification method and apparatus for platform molecular diagnostics
EP3901280B1 (en) * 2012-10-17 2025-03-12 10x Genomics Sweden AB Methods and product for optimising localised or spatial detection of gene expression in a tissue sample
CA2901138A1 (en) * 2013-03-12 2014-10-09 Counsyl, Inc. Systems and methods for prenatal genetic analysis
WO2015065924A2 (en) * 2013-10-28 2015-05-07 Massachusetts Institute Of Technology Hydrogel microstructures with immiscible fluid isolation for small reaction volumes
US20170044525A1 (en) * 2014-04-29 2017-02-16 Illumina, Inc. Multiplexed single cell gene expression analysis using template switch and tagmentation
WO2015172080A1 (en) * 2014-05-08 2015-11-12 Fluidigm Corporation Integrated single cell sequencing
AU2015259024B2 (en) * 2014-05-16 2021-07-01 Illumina, Inc. Nucleic acid synthesis techniques
US10870848B2 (en) * 2015-09-15 2020-12-22 Takara Bio Usa, Inc. Methods for preparing a next generation sequencing (NGS) library from a ribonucleic acid (RNA) sample and compositions for practicing the same
CA3287905A1 (en) * 2016-10-14 2025-11-29 Wake Forest University Health Sciences Compositions, cell constructs, and methods of making and using the same
CN119842876A (zh) * 2017-08-01 2025-04-18 伊鲁米纳公司 使用的水凝胶珠和流动池的遗传物质的空间索引和文库制备
JP2021511823A (ja) * 2018-01-23 2021-05-13 バル・イラン・ユニバーシティＢａｒ Ｉｌａｎ Ｕｎｉｖｅｒｓｉｔｙ 細胞培養装置および方法
WO2019203728A1 (en) * 2018-04-20 2019-10-24 National University Of Singapore Linearization and labeling of single-stranded dna for optical sequence analysis
CN112585085A (zh) * 2018-08-06 2021-03-30 康宁股份有限公司 聚合水凝胶纳米结构阵列及其用途
CN113767175B (zh) * 2018-08-28 2025-07-25 10X基因组学股份有限公司 增加空间阵列分辨率
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CN116685850A (zh) * 2020-12-15 2023-09-01 贝克顿迪金森公司 单细胞分泌组分析

Also Published As

Publication number Publication date
BR112023025731A2 (pt) 2024-02-27
WO2022261507A1 (en) 2022-12-15
EP4352286A4 (en) 2025-04-23
KR20240019808A (ko) 2024-02-14
EP4352286A1 (en) 2024-04-17
MX2023014290A (es) 2024-02-27
JP2024520804A (ja) 2024-05-24
CN117813424A (zh) 2024-04-02
IL308886A (en) 2024-01-01
CA3220725A1 (en) 2022-12-15
US20240301465A1 (en) 2024-09-12

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