AU2013221356B2 - Nanopore sensor for enzyme-mediated protein translocation - Google Patents
Nanopore sensor for enzyme-mediated protein translocation Download PDFInfo
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- AU2013221356B2 AU2013221356B2 AU2013221356A AU2013221356A AU2013221356B2 AU 2013221356 B2 AU2013221356 B2 AU 2013221356B2 AU 2013221356 A AU2013221356 A AU 2013221356A AU 2013221356 A AU2013221356 A AU 2013221356A AU 2013221356 B2 AU2013221356 B2 AU 2013221356B2
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12M—APPARATUS FOR ENZYMOLOGY OR MICROBIOLOGY; APPARATUS FOR CULTURING MICROORGANISMS FOR PRODUCING BIOMASS, FOR GROWING CELLS OR FOR OBTAINING FERMENTATION OR METABOLIC PRODUCTS, i.e. BIOREACTORS OR FERMENTERS
- C12M47/00—Means for after-treatment of the produced biomass or of the fermentation or metabolic products, e.g. storage of biomass
- C12M47/06—Hydrolysis; Cell lysis; Extraction of intracellular or cell wall material
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/48—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving transferase
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/543—Immunoassay; Biospecific binding assay; Materials therefor with an insoluble carrier for immobilising immunochemicals
- G01N33/54366—Apparatus specially adapted for solid-phase testing
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B82—NANOTECHNOLOGY
- B82Y—SPECIFIC USES OR APPLICATIONS OF NANOSTRUCTURES; MEASUREMENT OR ANALYSIS OF NANOSTRUCTURES; MANUFACTURE OR TREATMENT OF NANOSTRUCTURES
- B82Y15/00—Nanotechnology for interacting, sensing or actuating, e.g. quantum dots as markers in protein assays or molecular motors
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/483—Physical analysis of biological material
- G01N33/487—Physical analysis of biological material of liquid biological material
- G01N33/48707—Physical analysis of biological material of liquid biological material by electrical means
- G01N33/48721—Investigating individual macromolecules, e.g. by translocation through nanopores
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- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Immunology (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- Molecular Biology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Health & Medical Sciences (AREA)
- Biomedical Technology (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Cell Biology (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Urology & Nephrology (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Hematology (AREA)
- Sustainable Development (AREA)
- Food Science & Technology (AREA)
- Biophysics (AREA)
- Medicinal Chemistry (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Peptides Or Proteins (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
- Investigating Or Analyzing Materials By The Use Of Electric Means (AREA)
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201261599754P | 2012-02-16 | 2012-02-16 | |
| US61/599,754 | 2012-02-16 | ||
| US201261713163P | 2012-10-12 | 2012-10-12 | |
| US61/713,163 | 2012-10-12 | ||
| PCT/US2013/026414 WO2013123379A2 (en) | 2012-02-16 | 2013-02-15 | Nanopore sensor for enzyme-mediated protein translocation |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2013221356A1 AU2013221356A1 (en) | 2014-08-28 |
| AU2013221356B2 true AU2013221356B2 (en) | 2018-10-18 |
Family
ID=48984893
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2013221356A Active AU2013221356B2 (en) | 2012-02-16 | 2013-02-15 | Nanopore sensor for enzyme-mediated protein translocation |
Country Status (10)
| Country | Link |
|---|---|
| US (2) | US11339365B2 (https=) |
| EP (1) | EP2814939B1 (https=) |
| JP (2) | JP6312607B2 (https=) |
| KR (1) | KR102066758B1 (https=) |
| CN (1) | CN104619854B (https=) |
| AU (1) | AU2013221356B2 (https=) |
| BR (1) | BR112014020255B1 (https=) |
| CA (1) | CA2864824C (https=) |
| DK (1) | DK2814939T3 (https=) |
| WO (1) | WO2013123379A2 (https=) |
Families Citing this family (70)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| GB0724736D0 (en) | 2007-12-19 | 2008-01-30 | Oxford Nanolabs Ltd | Formation of layers of amphiphilic molecules |
| CN108051578B (zh) | 2011-04-04 | 2020-07-24 | 哈佛大学校长及研究员协会 | 通过局部电位测量进行的纳米孔感测 |
| GB201202519D0 (en) | 2012-02-13 | 2012-03-28 | Oxford Nanopore Tech Ltd | Apparatus for supporting an array of layers of amphiphilic molecules and method of forming an array of layers of amphiphilic molecules |
| CN104321441B (zh) | 2012-02-16 | 2016-10-19 | 牛津楠路珀尔科技有限公司 | 聚合物的测量的分析 |
| EP2906720A4 (en) | 2012-10-10 | 2016-06-01 | Univ Arizona | MOLECULAR BASED SYSTEMS AND DEVICES AND METHOD FOR PRODUCING THEM |
| GB201222928D0 (en) | 2012-12-19 | 2013-01-30 | Oxford Nanopore Tech Ltd | Analysis of a polynucleotide |
| WO2014138253A1 (en) | 2013-03-05 | 2014-09-12 | Arizona Board Of Regents, Acting For And On Behalf Of Arizona State University | Translocation of a polymer through a nanopore |
| GB201316849D0 (en) * | 2013-09-23 | 2013-11-06 | Isis Innovation | Method |
| US10047392B2 (en) | 2014-02-21 | 2018-08-14 | Northeastern University | Fluorescence-based analysis of biopolymers using nanopores |
| US10336713B2 (en) | 2014-02-27 | 2019-07-02 | Arizona Board Of Regents, Acting For And On Behalf Of, Arizona State University | Triazole-based reader molecules and methods for synthesizing and use thereof |
| CA3163156C (en) * | 2014-07-31 | 2025-07-08 | Illumina, Inc. | HYBRID NANOPORE SENSORS |
| EP4397972A3 (en) | 2014-10-16 | 2024-10-09 | Oxford Nanopore Technologies PLC | Alignment mapping estimation |
| US20160194698A1 (en) * | 2014-12-16 | 2016-07-07 | Arizona Board Of Regents On Behalf Of Arizona State University | Systems, apparatuses and methods for reading polymer sequence |
| CN112816679B (zh) | 2015-02-05 | 2024-05-28 | 哈佛大学校长及研究员协会 | 一种用于感测分子穿过纳米孔的移位的方法 |
| GB201508669D0 (en) | 2015-05-20 | 2015-07-01 | Oxford Nanopore Tech Ltd | Methods and apparatus for forming apertures in a solid state membrane using dielectric breakdown |
| US10126262B2 (en) * | 2015-09-24 | 2018-11-13 | Genia Technologies, Inc. | Differential output of analog memories storing nanopore measurement samples |
| GB201611770D0 (en) | 2016-07-06 | 2016-08-17 | Oxford Nanopore Tech | Microfluidic device |
| CN106443008A (zh) * | 2016-08-31 | 2017-02-22 | 中国科学院重庆绿色智能技术研究院 | 一种基于固态纳米孔的hiv‑1蛋白酶检测方法 |
| GB201619930D0 (en) | 2016-11-24 | 2017-01-11 | Oxford Nanopore Tech | Apparatus and methods for controlling insertion of a membrane channel into a membrane |
| AU2018290975B2 (en) * | 2017-06-29 | 2024-10-03 | President And Fellows Of Harvard College | Deterministic stepping of polymers through a nanopore |
| EP3655423B1 (en) * | 2017-07-17 | 2023-12-20 | President and Fellows of Harvard College | Nanopore-matched protein shuttle for molecular characterization |
| JP7012841B2 (ja) * | 2017-10-23 | 2022-01-28 | エフ.ホフマン-ラ ロシュ アーゲー | 浸透性の不均衡を利用した膜内のタンパク質ナノポアの除去および再挿入 |
| GB2568895B (en) | 2017-11-29 | 2021-10-27 | Oxford Nanopore Tech Ltd | Microfluidic device |
| CN108226249B (zh) * | 2018-01-09 | 2021-02-26 | 深圳市梅丽纳米孔科技有限公司 | 一次性纳米孔生物传感器及其制作方法 |
| CN112566548A (zh) * | 2018-03-20 | 2021-03-26 | 格拉夫威尔科技公司 | 可替换式传感器系统和方法 |
| CN112534063A (zh) | 2018-05-22 | 2021-03-19 | 安序源有限公司 | 用于核酸测序的方法、系统和组合物 |
| GB2574048B (en) | 2018-05-24 | 2021-06-16 | Oxford Nanopore Tech Ltd | Nanopore sensor component with electrostatic discharge protection |
| CN119264211A (zh) | 2018-08-27 | 2025-01-07 | 瑞泽恩制药公司 | 拉曼光谱在下游纯化中的应用 |
| WO2020055246A1 (en) | 2018-09-11 | 2020-03-19 | Rijksuniversiteit Groningen | Biological nanopores having tunable pore diameters and uses thereof as analytical tools |
| WO2020061385A1 (en) * | 2018-09-19 | 2020-03-26 | Conagen Inc. | Controllable protein degradation via engineering degradation tag variants in corynebacterium host cells |
| US20210340192A1 (en) * | 2018-10-05 | 2021-11-04 | University Of Washington | Reporter constructs for nanopore-based detection of biological activity |
| CN113260449B (zh) * | 2018-12-11 | 2023-09-29 | 豪夫迈·罗氏有限公司 | 用于膜中自限性蛋白质孔插入的系统和方法 |
| JP7492200B2 (ja) | 2019-03-12 | 2024-05-29 | オックスフォード ナノポール テクノロジーズ ピーエルシー | ナノ細孔センシングデバイスと操作方法およびその成形方法 |
| NL2023062B1 (en) * | 2019-05-03 | 2020-11-30 | Univ Delft Tech | Protein current trace signal acquisition using a nanopore |
| GB201907243D0 (en) * | 2019-05-22 | 2019-07-03 | Oxford Nanopore Tech Ltd | Sensing interactions between molecular entities and nanapores |
| CN112147185B (zh) * | 2019-06-29 | 2022-07-01 | 清华大学 | 一种控制多肽穿过纳米孔速度的方法及其应用 |
| CN110554079B (zh) * | 2019-09-26 | 2024-10-22 | 中国科学院重庆绿色智能技术研究院 | 一种基于纳米通道的抗体单分子检测系统及方法 |
| GB201915480D0 (en) | 2019-10-25 | 2019-12-11 | Oxford Nanopore Tech Ltd | Improved nanopore sensing device, components and method of manufacture |
| WO2021097349A1 (en) * | 2019-11-15 | 2021-05-20 | Machine Bio Inc. | Methods and systems for generating biological molecules |
| US20220412948A1 (en) * | 2019-11-19 | 2022-12-29 | Rijksuniversiteit Groningen | Artificial nanopores and uses and methods relating thereto |
| CN114761799A (zh) | 2019-12-02 | 2022-07-15 | 牛津纳米孔科技公开有限公司 | 使用纳米孔表征靶多肽的方法 |
| NL2024579B1 (en) | 2019-12-24 | 2021-09-06 | Univ Delft Tech | Protein and peptide fingerprinting and sequencing by nanopore translocation of peptide-oligonucleotide complexes |
| US20230194499A1 (en) * | 2020-04-14 | 2023-06-22 | Geneus Technologies Chengdu ) Co., Ltd. | Nanopore preparation and detection method and detection apparatus thereof |
| GB202016874D0 (en) | 2020-10-23 | 2020-12-09 | Oxford Nanopore Tech Ltd | Nanopore support structure and manufacture thereof |
| EP4675256A3 (en) | 2020-07-17 | 2026-01-28 | Oxford Nanopore Technologies PLC | Nanopore sensing device |
| US12535457B2 (en) | 2020-07-22 | 2026-01-27 | Oxford Nanopore Technologies Plc | Solid state nanopore formation |
| KR102309424B1 (ko) * | 2020-09-28 | 2021-10-07 | 한국생명공학연구원 | 나노포어를 이용한 리보스위치-표적 물질의 스크리닝 방법 |
| US11994508B2 (en) * | 2020-12-23 | 2024-05-28 | Northeastern University | Method and system for linearization and translocation of single protein molecules through nanopores |
| US11994484B2 (en) * | 2021-03-25 | 2024-05-28 | The Regents Of The University Of California | Apparatus and method for single cell discrimination |
| GB202112235D0 (en) | 2021-08-26 | 2021-10-13 | Oxford Nanopore Tech Ltd | Nanopore |
| CN118318049A (zh) | 2021-09-28 | 2024-07-09 | 安序源有限公司 | 用于处理核酸样品的方法以及核酸样品的组合物 |
| GB202118908D0 (en) | 2021-12-23 | 2022-02-09 | Oxford Nanopore Tech Ltd | Method |
| EP4565882A1 (en) | 2022-08-02 | 2025-06-11 | Glyphic Biotechnologies, Inc. | Protein sequencing via coupling of polymerizable molecules |
| KR20250116014A (ko) | 2022-10-28 | 2025-07-31 | 리엑스유니버시테이트 그로닝겐 | 나노기공-기반 단백질 분석 |
| GB202216162D0 (en) | 2022-10-31 | 2022-12-14 | Oxford Nanopore Tech Plc | Method |
| GB202216905D0 (en) | 2022-11-11 | 2022-12-28 | Oxford Nanopore Tech Plc | Novel pore monomers and pores |
| CN120265979A (zh) * | 2022-12-29 | 2025-07-04 | 深圳华大生命科学研究院 | 生物纳米孔传感器、其制备方法及应用 |
| EP4662489A1 (en) | 2023-02-07 | 2025-12-17 | Oxford University Innovation Limited | Method of characterising a peptide, polypeptide or protein using a nanopore |
| CN120917151A (zh) * | 2023-04-28 | 2025-11-07 | 清华大学 | 一种被修饰的多肽、多肽复合物、多肽混合物及控制多肽移位速度或表征多肽的系统和方法 |
| AU2024283017A1 (en) * | 2023-06-01 | 2025-12-11 | Oxford Nanopore Technologies Plc | Method and kit for rereading single protein molecules using a nanopore and an unfoldase |
| GB202313202D0 (en) * | 2023-08-30 | 2023-10-11 | Portal Biotech Ltd | Systems and methods for nanopore-based analyte detection |
| CN119667132A (zh) * | 2023-09-20 | 2025-03-21 | 西安电子科技大学 | 一种半合成纳米孔及其制备方法和蛋白质测序方法 |
| GB202317028D0 (en) | 2023-11-06 | 2023-12-20 | Oxford Nanopore Tech Ltd | Method |
| WO2025120010A1 (en) * | 2023-12-04 | 2025-06-12 | Adolphe Merkle Institute, University Of Fribourg | Ply nanopores |
| WO2025120150A1 (en) | 2023-12-08 | 2025-06-12 | Oxford Nanopore Technologies Plc | Methods and apparatus for forming apertures, methods and apparatus for unblocking apertures, methods of sensing molecular entities in apertures, and measurement systems |
| WO2026052817A1 (en) | 2024-09-06 | 2026-03-12 | Oxford Nanopore Technologies Plc | Method |
| WO2026052811A2 (en) | 2024-09-06 | 2026-03-12 | Oxford Nanopore Technologies Plc | Method |
| GB2644084A (en) | 2024-09-16 | 2026-03-18 | Oxford Nanopore Tech Plc | Augmented consensus and variant calling |
| GB202413747D0 (en) | 2024-09-18 | 2024-10-30 | Oxford Nanopore Tech Plc | Preprocessing nanopore signals |
| CN119470870B (zh) * | 2024-11-19 | 2025-10-17 | 广东工业大学 | 一种基于组合式纳米孔结构的蛋白质检测方法 |
Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2010055307A1 (en) * | 2008-11-14 | 2010-05-20 | Isis Innovation Limited | Methods of enhancing translocation of charged analytes through transmembrane protein pores |
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| US5795782A (en) | 1995-03-17 | 1998-08-18 | President & Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
| US6362002B1 (en) | 1995-03-17 | 2002-03-26 | President And Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
| SE513280C2 (sv) | 1998-11-05 | 2000-08-14 | Forbo Int Sa | Beläggningsmaterial för golv och förfarande för dess framställning |
| US6267872B1 (en) | 1998-11-06 | 2001-07-31 | The Regents Of The University Of California | Miniature support for thin films containing single channels or nanopores and methods for using same |
| US6464842B1 (en) | 1999-06-22 | 2002-10-15 | President And Fellows Of Harvard College | Control of solid state dimensional features |
| EP2383776B1 (en) | 1999-06-22 | 2015-02-25 | President and Fellows of Harvard College | Solid state nanopore device for evaluating biopolymers |
| EP1212462B1 (en) | 1999-09-07 | 2006-01-25 | The Regents of the University of California | Methods of determining the presence of double stranded nucleic acids in a sample |
| WO2002042496A2 (en) | 2000-11-27 | 2002-05-30 | The Regents Of The University Of California | Methods and devices for characterizing duplex nucleic acid molecules |
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| WO2005017025A2 (en) * | 2003-08-15 | 2005-02-24 | The President And Fellows Of Harvard College | Study of polymer molecules and conformations with a nanopore |
| US7238485B2 (en) | 2004-03-23 | 2007-07-03 | President And Fellows Of Harvard College | Methods and apparatus for characterizing polynucleotides |
| WO2005124888A1 (en) | 2004-06-08 | 2005-12-29 | President And Fellows Of Harvard College | Suspended carbon nanotube field effect transistor |
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| WO2012003279A2 (en) * | 2010-06-30 | 2012-01-05 | Syracuse University | Bioengineered protein pores |
-
2013
- 2013-02-15 WO PCT/US2013/026414 patent/WO2013123379A2/en not_active Ceased
- 2013-02-15 CA CA2864824A patent/CA2864824C/en active Active
- 2013-02-15 KR KR1020147025764A patent/KR102066758B1/ko active Active
- 2013-02-15 US US14/378,448 patent/US11339365B2/en active Active
- 2013-02-15 DK DK13749423.3T patent/DK2814939T3/en active
- 2013-02-15 CN CN201380019821.3A patent/CN104619854B/zh active Active
- 2013-02-15 EP EP13749423.3A patent/EP2814939B1/en active Active
- 2013-02-15 JP JP2014557827A patent/JP6312607B2/ja active Active
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- 2013-02-15 BR BR112014020255-9A patent/BR112014020255B1/pt active IP Right Grant
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2017
- 2017-12-08 JP JP2017236383A patent/JP6594944B2/ja active Active
-
2022
- 2022-05-16 US US17/745,399 patent/US20220396758A1/en active Pending
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2010055307A1 (en) * | 2008-11-14 | 2010-05-20 | Isis Innovation Limited | Methods of enhancing translocation of charged analytes through transmembrane protein pores |
Also Published As
| Publication number | Publication date |
|---|---|
| DK2814939T3 (en) | 2018-07-30 |
| CN104619854A (zh) | 2015-05-13 |
| JP2015517799A (ja) | 2015-06-25 |
| CA2864824C (en) | 2020-06-16 |
| BR112014020255A8 (pt) | 2017-07-11 |
| CN104619854B (zh) | 2018-07-17 |
| JP2018075021A (ja) | 2018-05-17 |
| JP6594944B2 (ja) | 2019-10-23 |
| JP6312607B2 (ja) | 2018-04-18 |
| AU2013221356A1 (en) | 2014-08-28 |
| WO2013123379A3 (en) | 2015-03-12 |
| CA2864824A1 (en) | 2013-08-22 |
| BR112014020255B1 (pt) | 2022-01-25 |
| EP2814939A2 (en) | 2014-12-24 |
| KR102066758B1 (ko) | 2020-02-11 |
| EP2814939B1 (en) | 2018-04-18 |
| US11339365B2 (en) | 2022-05-24 |
| WO2013123379A2 (en) | 2013-08-22 |
| EP2814939A4 (en) | 2016-02-24 |
| US20220396758A1 (en) | 2022-12-15 |
| BR112014020255A2 (https=) | 2017-06-20 |
| KR20140131539A (ko) | 2014-11-13 |
| US20160032236A1 (en) | 2016-02-04 |
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