AU2002303760B2 - Methods for isolating and labeling sample molecules - Google Patents

Methods for isolating and labeling sample molecules Download PDF

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Publication number
AU2002303760B2
AU2002303760B2 AU2002303760A AU2002303760A AU2002303760B2 AU 2002303760 B2 AU2002303760 B2 AU 2002303760B2 AU 2002303760 A AU2002303760 A AU 2002303760A AU 2002303760 A AU2002303760 A AU 2002303760A AU 2002303760 B2 AU2002303760 B2 AU 2002303760B2
Authority
AU
Australia
Prior art keywords
group
tag
composition
polypeptide
sample molecule
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired
Application number
AU2002303760A
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English (en)
Other versions
AU2002303760A1 (en
Inventor
Rudolf H. Aebersold
Sasi Pillai
Subhasish Purkayastha
Beate Rist
George J. Vella
Huilin Zhou
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
WASHINGTON, University of
Institute for Systems Biology
Applied Biosystems LLC
Original Assignee
Inst For Systems Biology
University of Washington
Institute for Systems Biology
Applied Biosystems LLC
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Inst For Systems Biology, University of Washington, Institute for Systems Biology, Applied Biosystems LLC filed Critical Inst For Systems Biology
Publication of AU2002303760A1 publication Critical patent/AU2002303760A1/en
Application granted granted Critical
Publication of AU2002303760B2 publication Critical patent/AU2002303760B2/en
Assigned to UNIVERSITY OF WASHINGTON, APPLIED BIOSYSTEMS, LLC., THE INSTITUTE FOR SYSTEMS BIOLOGY reassignment UNIVERSITY OF WASHINGTON Request for Assignment Assignors: APPLERA CORPORATION, THE INSTITUTE FOR SYSTEMS BIOLOGY, UNIVERSITY OF WASHINGTON
Anticipated expiration legal-status Critical
Expired legal-status Critical Current

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Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/531—Production of immunochemical test materials
    • G01N33/532—Production of labelled immunochemicals
    • G01N33/533—Production of labelled immunochemicals with fluorescent label
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/531—Production of immunochemical test materials
    • G01N33/532—Production of labelled immunochemicals
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
    • G01N33/582—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances with fluorescent label
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2458/00—Labels used in chemical analysis of biological material
    • G01N2458/15—Non-radioactive isotope labels, e.g. for detection by mass spectrometry
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00—Chemistry: analytical and immunological testing
    • Y10T436/24—Nuclear magnetic resonance, electron spin resonance or other spin effects or mass spectrometry

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Immunology (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Biomedical Technology (AREA)
  • Chemical & Material Sciences (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Food Science & Technology (AREA)
  • Biochemistry (AREA)
  • Cell Biology (AREA)
  • Biotechnology (AREA)
  • Medicinal Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Sampling And Sample Adjustment (AREA)
  • Peptides Or Proteins (AREA)
AU2002303760A 2001-05-14 2002-05-14 Methods for isolating and labeling sample molecules Expired AU2002303760B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US09/858,198 2001-05-14
US09/858,198 US7183116B2 (en) 2001-05-14 2001-05-14 Methods for isolation and labeling of sample molecules
PCT/US2002/015500 WO2002093131A2 (en) 2001-05-14 2002-05-14 Methods for isolating and labeling sample molecules

Publications (2)

Publication Number Publication Date
AU2002303760A1 AU2002303760A1 (en) 2003-05-01
AU2002303760B2 true AU2002303760B2 (en) 2008-04-10

Family

ID=25327723

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2002303760A Expired AU2002303760B2 (en) 2001-05-14 2002-05-14 Methods for isolating and labeling sample molecules

Country Status (9)

Country Link
US (3) US7183116B2 (cg-RX-API-DMAC10.html)
EP (1) EP1456632B1 (cg-RX-API-DMAC10.html)
JP (2) JP4414654B2 (cg-RX-API-DMAC10.html)
CN (1) CN1602422B (cg-RX-API-DMAC10.html)
AT (1) ATE495436T1 (cg-RX-API-DMAC10.html)
AU (1) AU2002303760B2 (cg-RX-API-DMAC10.html)
CA (1) CA2447874C (cg-RX-API-DMAC10.html)
DE (1) DE60238940D1 (cg-RX-API-DMAC10.html)
WO (1) WO2002093131A2 (cg-RX-API-DMAC10.html)

Families Citing this family (44)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB9425138D0 (en) 1994-12-12 1995-02-08 Dynal As Isolation of nucleic acid
JP2001512306A (ja) 1997-01-08 2001-08-21 ライフ テクノロジーズ，インコーポレイテッド タンパク質の産生方法
DE60124265D1 (de) * 2000-05-05 2006-12-14 Purdue Research Foundation Durch affinität ausgewählte unterschriftspeptide zur identifizierung und quantifizierung von proteinen
US20030017507A1 (en) * 2001-05-30 2003-01-23 Johnson Richard S. Relative protein quantitation phosphoproteins using stable isotope labeling
JP3935487B2 (ja) 2001-07-16 2007-06-20 フーベルト・ケスター 捕獲化合物、その収集物、ならびにプロテオームおよび複合組成物の分析方法
EP1432992A2 (en) * 2001-09-27 2004-06-30 Purdue Research Foundation Controlling isotope effects during fractionation of analytes
EP1585984B1 (en) * 2001-12-11 2009-04-01 University Of Medicine And Dentistry Of New Jersey Diagnostic methods for protein profiling
CN1617938A (zh) 2002-01-16 2005-05-18 戴诺生物技术有限公司 从单个样品中分离核酸和蛋白质的方法
ES2319634T3 (es) * 2002-03-11 2009-05-11 Caprotec Bioanalytics Gmbh Compuestos y metodos para analizar el proteoma.
AU2003220188A1 (en) * 2002-03-11 2003-09-29 President And Fellows Of Harvard College Detection and quantification of modified proteins
US20070269895A1 (en) * 2002-06-03 2007-11-22 The Institute For Systems Biology Methods for quantitative proteome analysis of glycoproteins
JP4583168B2 (ja) * 2002-06-03 2010-11-17 ザ インスティテュート フォー システムズ バイオロジー 糖タンパク質を定量的プロテオ−ム分析する方法
JP2004170195A (ja) * 2002-11-19 2004-06-17 Reverse Proteomics Research Institute Co Ltd タンパク質の固定化方法
GB0229287D0 (en) * 2002-12-16 2003-01-22 Dna Res Innovations Ltd Polyfunctional reagents
EP1583972B1 (en) * 2003-01-16 2010-11-24 caprotec bioanalytics GmbH Methods for identifying drug non-target proteins
US7794947B2 (en) * 2003-07-10 2010-09-14 Institute For Systems Biology Affinity capture of peptides by microarray and related methods
WO2005007663A2 (en) * 2003-07-14 2005-01-27 Irm Llc Fluorogenic enzyme substrates and uses thereof
WO2005007678A2 (en) * 2003-07-14 2005-01-27 Irm Llc Methods for the preparation of rhodamine
WO2005015239A2 (en) * 2003-08-07 2005-02-17 Cornell Research Foundation, Inc. Method for n-terminal labeling of proteins
JP4363935B2 (ja) * 2003-09-17 2009-11-11 株式会社豊田中央研究所 生体物質の光固定化・回収方法及び表面プラズモン共鳴センサー
WO2005030981A2 (en) 2003-09-25 2005-04-07 Invitrogen Corporation Homogeneous populations of molecules
WO2006017208A1 (en) * 2004-07-12 2006-02-16 Applera Corporation Mass tags for quantitative analyses
US20070048752A1 (en) * 2004-07-12 2007-03-01 Applera Corporation Mass tags for quantitative analyses
US7456022B2 (en) * 2004-07-30 2008-11-25 Reverse Proteomics Research Institute Co., Ltd. Solid support having ligand immobilized thereon by using photocleavable linker
JP4635532B2 (ja) * 2004-09-14 2011-02-23 株式会社ニコン 生体分子の分析および回収方法
US20060134694A1 (en) * 2004-12-22 2006-06-22 Intel Corporation Methods of protein profiling by thiolation
WO2006094185A2 (en) * 2005-03-03 2006-09-08 Dmi Biosciences Inc. Quantification of proteins
EP2322920B1 (en) * 2005-06-07 2014-12-10 Centre National de la Recherche Scientifique (CNRS) MALDI tissue imaging using conjugates cleavable by fast fragmentation
GB0515323D0 (en) * 2005-07-26 2005-08-31 Electrophoretics Ltd Mass labels
US7906341B2 (en) * 2006-06-30 2011-03-15 Dh Technologies Development Pte, Ltd. Methods, mixtures, kits and compositions pertaining to analyte determination
WO2008042495A2 (en) 2006-07-21 2008-04-10 Life Technologies Corporation Sharply resolving labeled protein molecular weight standards
AU2007349186B2 (en) * 2006-12-07 2014-03-06 Applied Isotope Technologies, Inc Solid phase and catalyzed enabled automated isotope dilution and speciated isotope dilution mass spectrometry
US7728287B2 (en) * 2007-03-01 2010-06-01 Lawrence Livermore National Security, Llc Imaging mass spectrometer with mass tags
WO2011010964A1 (en) * 2009-07-22 2011-01-27 Agency For Science, Technology And Research Differentiation of isobaric amino acids and other species
WO2012027717A2 (en) 2010-08-27 2012-03-01 The Texas A&M University System Flourescence labeling reagents and uses thereof
US8492163B2 (en) 2011-01-31 2013-07-23 Dh Technologies Development Pte. Ltd. Methods, mixtures, kits and compositions pertaining to analyte determination
GB2528643A (en) * 2014-07-08 2016-02-03 Adc Biotechnology Ltd Method of synthesising ADCs
JP2017020896A (ja) * 2015-07-10 2017-01-26 国立大学法人北陸先端科学技術大学院大学 Ｎ末端標識剤、これを用いた蛍光標識タンパク質及びその製造方法
CN107848956A (zh) * 2015-07-29 2018-03-27 马克斯-普朗克科学促进学会 用于样品制备尤其是用于质谱分析的方式和方法
CN110687297B (zh) * 2018-07-06 2023-08-22 复旦大学 基于稳定同位素半胱氨酸代谢标记的棕榈酰化修饰蛋白质定量分析方法
GB201913598D0 (en) * 2019-09-20 2019-11-06 Univ Birmingham Labelling of biomolecules
CN113075114B (zh) * 2019-12-17 2022-07-01 北京大学 一种用于单细胞分析的有机质谱流式分析方法
US20230384314A1 (en) * 2020-10-16 2023-11-30 Lmx Medtech Llc Oxidative Mass Labeling
CN119569971B (zh) * 2025-02-07 2025-05-27 吉林大学 一种用于蛋白质磷酸化和棕榈酰化修饰同时筛选的Janus材料的制备方法

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5744101A (en) 1989-06-07 1998-04-28 Affymax Technologies N.V. Photolabile nucleoside protecting groups
US5143854A (en) 1989-06-07 1992-09-01 Affymax Technologies N.V. Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof
US5986076A (en) * 1994-05-11 1999-11-16 Trustees Of Boston University Photocleavable agents and conjugates for the detection and isolation of biomolecules
US5739386A (en) 1994-06-23 1998-04-14 Affymax Technologies N.V. Photolabile compounds and methods for their use
AU734636B2 (en) 1997-07-11 2001-06-21 Xzillion Gmbh & Co. Kg Characterising nucleic acids
ATE253126T1 (de) * 1998-08-25 2003-11-15 Univ Washington Schnelle quantitative analyse von proteinen oder proteinfunktionen in komplexen gemischen
EP1295123A4 (en) 2000-06-12 2005-02-02 Univ Washington SELECTIVE MARKING AND ISOLATION OF PHOSPHOPEPTIDES AND APPLICATIONS TO PROTEOMIC ANALYSIS
EP1330654B1 (en) 2000-10-23 2006-03-08 Genetics Institute, LLC Acid-labile isotope-coded extractant (alice) in mass spectometric analysis

Also Published As

Publication number Publication date
JP4414654B2 (ja) 2010-02-10
US20040110186A1 (en) 2004-06-10
CA2447874A1 (en) 2002-11-21
JP2009175157A (ja) 2009-08-06
US20040265810A1 (en) 2004-12-30
EP1456632A2 (en) 2004-09-15
DE60238940D1 (de) 2011-02-24
CN1602422B (zh) 2011-06-08
US7183116B2 (en) 2007-02-27
ATE495436T1 (de) 2011-01-15
US7364911B2 (en) 2008-04-29
CN1602422A (zh) 2005-03-30
EP1456632B1 (en) 2011-01-12
US20020168644A1 (en) 2002-11-14
JP2005503540A (ja) 2005-02-03
WO2002093131A3 (en) 2004-05-27
EP1456632A4 (en) 2005-04-20
CA2447874C (en) 2010-08-31
WO2002093131A2 (en) 2002-11-21

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FGA Letters patent sealed or granted (standard patent)
PC Assignment registered

Owner name: THE INSTITUTE FOR SYSTEMS BIOLOGY; UNIVERSITY OF W

Free format text: FORMER OWNER WAS: UNIVERSITY OF WASHINGTON; APPLERA CORPORATION; THE INSTITUTE FOR SYSTEMS BIOLOGY

MK14 Patent ceased section 143(a) (annual fees not paid) or expired