AU2002213175B2 - Solid support assay systems and methods utilizing non-standard bases - Google Patents

Solid support assay systems and methods utilizing non-standard bases Download PDF

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Publication number
AU2002213175B2
AU2002213175B2 AU2002213175A AU2002213175A AU2002213175B2 AU 2002213175 B2 AU2002213175 B2 AU 2002213175B2 AU 2002213175 A AU2002213175 A AU 2002213175A AU 2002213175 A AU2002213175 A AU 2002213175A AU 2002213175 B2 AU2002213175 B2 AU 2002213175B2
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Australia
Prior art keywords
sequence
primer
oligonucleotide
analyte
complementary
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Expired
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AU2002213175A
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AU2002213175A1 (en
Inventor
Jennifer K. Grenier
David J. Marshall
James R. Prudent
Jerod L. Ptacin
Craig S. Richmond
Eric B. Roesch
Christopher W. Scherrer
Christopher B. Sherrill
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Luminex Corp
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Luminex Corp
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Priority claimed from US09/861,292 external-priority patent/US7422850B2/en
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Publication of AU2002213175B2 publication Critical patent/AU2002213175B2/en
Assigned to LUMINEX CORPORATION reassignment LUMINEX CORPORATION Request to Amend Deed and Register Assignors: ERAGEN BIOSCIENCES, INC.
Anticipated expiration legal-status Critical
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6832—Enhancement of hybridisation reaction
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C12Q1/6823—Release of bound markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6858—Allele-specific amplification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Silicon Compounds (AREA)
  • Polymers With Sulfur, Phosphorus Or Metals In The Main Chain (AREA)
  • Saccharide Compounds (AREA)
AU2002213175A 2000-10-14 2001-10-15 Solid support assay systems and methods utilizing non-standard bases Expired AU2002213175B2 (en)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US24039700P 2000-10-14 2000-10-14
US60/240,397 2000-10-14
US28283101P 2001-04-10 2001-04-10
US60/282,831 2001-04-10
US09/861,292 2001-05-18
US09/861,292 US7422850B2 (en) 2000-05-19 2001-05-18 Materials and methods for detection of nucleic acids
US29325901P 2001-05-22 2001-05-22
US60/293,259 2001-05-22
PCT/US2001/031993 WO2002033126A2 (en) 2000-10-14 2001-10-15 Solid support assay systems and methods utilizing non-standard bases

Publications (2)

Publication Number Publication Date
AU2002213175A1 AU2002213175A1 (en) 2002-07-04
AU2002213175B2 true AU2002213175B2 (en) 2007-09-13

Family

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AU2002213175A Expired AU2002213175B2 (en) 2000-10-14 2001-10-15 Solid support assay systems and methods utilizing non-standard bases
AU1317502A Pending AU1317502A (en) 2000-10-14 2001-10-15 Solid support assay systems and methods utilizing non-standard bases

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AU1317502A Pending AU1317502A (en) 2000-10-14 2001-10-15 Solid support assay systems and methods utilizing non-standard bases

Country Status (8)

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US (6) US6977161B2 (enExample)
EP (1) EP1358352B1 (enExample)
JP (1) JP4499987B2 (enExample)
AT (1) ATE422557T1 (enExample)
AU (2) AU2002213175B2 (enExample)
CA (1) CA2425747C (enExample)
DE (1) DE60137649D1 (enExample)
WO (1) WO2002033126A2 (enExample)

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US20030194705A1 (en) * 2002-03-01 2003-10-16 Schroth Gary P. Methods of using unnatural nucleobases for decoding
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WO2005081776A2 (en) * 2004-01-30 2005-09-09 Eragen Biosciences, Inc. Materials and methods for the detection of sars
WO2006101913A2 (en) * 2005-03-18 2006-09-28 Eragen Biosciences, Inc. Methods for detecting multiple species and subspecies of neiserria
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US7759062B2 (en) * 2006-06-09 2010-07-20 Third Wave Technologies, Inc. T-structure invasive cleavage assays, consistent nucleic acid dispensing, and low level target nucleic acid detection
US7794936B1 (en) * 2006-09-29 2010-09-14 Steven Albert Benner Using thymidine analogs to improve replication in an expanded genetic alphabet
US20080153097A1 (en) * 2006-11-15 2008-06-26 Eragen Biosciences, Inc. Methods and kits for detecting jak2 nucleic acid
US9725713B1 (en) * 2007-01-22 2017-08-08 Steven A Benner In vitro selection with expanded genetic alphabets
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US9249455B2 (en) * 2008-04-18 2016-02-02 Luminex Corporation Methods for detection and quantification of small RNA
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US9637783B1 (en) * 2008-06-17 2017-05-02 Steven Benner Amplification of oligonucleotides containing non-standard nucleotides by polymerase chain reactions
US10865431B1 (en) * 2008-06-17 2020-12-15 Steven A Benner Polymerase incorporation of non-standard nucleotides
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CN104271771A (zh) * 2012-06-20 2015-01-07 东丽株式会社 核酸的检测方法及核酸检测试剂盒
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Also Published As

Publication number Publication date
US6977161B2 (en) 2005-12-20
US8969047B2 (en) 2015-03-03
CA2425747C (en) 2012-01-24
US20120295808A1 (en) 2012-11-22
EP1358352A2 (en) 2003-11-05
CA2425747A1 (en) 2002-04-25
JP2004531205A (ja) 2004-10-14
US20140024550A1 (en) 2014-01-23
US7892796B2 (en) 2011-02-22
US20060078936A1 (en) 2006-04-13
AU1317502A (en) 2002-04-29
US20040106108A1 (en) 2004-06-03
US8518671B2 (en) 2013-08-27
ATE422557T1 (de) 2009-02-15
US20070087361A1 (en) 2007-04-19
JP4499987B2 (ja) 2010-07-14
WO2002033126A2 (en) 2002-04-25
US20150132759A1 (en) 2015-05-14
DE60137649D1 (de) 2009-03-26
WO2002033126A3 (en) 2003-08-28
US10240189B2 (en) 2019-03-26
EP1358352B1 (en) 2009-02-11
US8217160B2 (en) 2012-07-10

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