ATE236270T1 - Verfahren zum nachweis und zur entfernung von mutantsequenzen, die während enzymatischer amplifikation entstehen - Google Patents
Verfahren zum nachweis und zur entfernung von mutantsequenzen, die während enzymatischer amplifikation entstehenInfo
- Publication number
- ATE236270T1 ATE236270T1 AT96944843T AT96944843T ATE236270T1 AT E236270 T1 ATE236270 T1 AT E236270T1 AT 96944843 T AT96944843 T AT 96944843T AT 96944843 T AT96944843 T AT 96944843T AT E236270 T1 ATE236270 T1 AT E236270T1
- Authority
- AT
- Austria
- Prior art keywords
- dna duplexes
- removal
- detection
- formed during
- enzymatic amplification
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6848—Nucleic acid amplification reactions characterised by the means for preventing contamination or increasing the specificity or sensitivity of an amplification reaction
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S435/00—Chemistry: molecular biology and microbiology
- Y10S435/81—Packaged device or kit
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Physics & Mathematics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Analytical Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Immunology (AREA)
- Biomedical Technology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US867395P | 1995-12-15 | 1995-12-15 | |
| PCT/US1996/020075 WO1997021837A1 (en) | 1995-12-15 | 1996-12-13 | Methods for the detection and removal of mutant sequences that arise during enzymatic amplification using mismatch repair systems |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE236270T1 true ATE236270T1 (de) | 2003-04-15 |
Family
ID=21733009
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT96944843T ATE236270T1 (de) | 1995-12-15 | 1996-12-13 | Verfahren zum nachweis und zur entfernung von mutantsequenzen, die während enzymatischer amplifikation entstehen |
Country Status (7)
| Country | Link |
|---|---|
| US (1) | US5922539A (de) |
| EP (1) | EP0870060B1 (de) |
| JP (1) | JP2000501615A (de) |
| AT (1) | ATE236270T1 (de) |
| CA (1) | CA2240346C (de) |
| DE (1) | DE69627189T2 (de) |
| WO (1) | WO1997021837A1 (de) |
Families Citing this family (67)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6027898A (en) * | 1997-08-18 | 2000-02-22 | Transgenomic, Inc. | Chromatographic method for mutation detection using mutation site specifically acting enzymes and chemicals |
| WO1999019517A1 (en) | 1997-10-14 | 1999-04-22 | Transgenomic, Inc. | Analysis of nicked dna by matched ion polynucleotide chromatography |
| US6846655B1 (en) * | 1998-06-29 | 2005-01-25 | Phylos, Inc. | Methods for generating highly diverse libraries |
| EP1092039B1 (de) * | 1998-06-29 | 2012-02-29 | Bristol-Myers Squibb Company | Verfahren zur erzeugung von hochgradig diversen bibliotheken |
| CA2422487A1 (en) * | 2000-09-18 | 2002-03-28 | Pioneer Hi-Bred International, Inc. | Rice mlh1 ortholog and uses thereof |
| US20020146723A1 (en) * | 2000-10-25 | 2002-10-10 | Krontiris Theodore G. | Candidate region mismatch scanning for genotyping and mutation detection |
| US6783941B2 (en) | 2000-12-06 | 2004-08-31 | Novozymes A/S | Method for producing a polynucleotide library in vitro by mismatch repair of heteroduplexes |
| AU2002220529A1 (en) * | 2000-12-06 | 2002-06-18 | Novozymes A/S | Method for producing a polynucleotide library |
| US20020146732A1 (en) * | 2001-02-02 | 2002-10-10 | Padgett Hal S. | Method of increasing complementarity in a heteroduplex |
| US20040142433A1 (en) * | 2001-02-02 | 2004-07-22 | Padgett Hal S. | Polynucleotide sequence variants |
| US7838219B2 (en) * | 2001-02-02 | 2010-11-23 | Novici Biotech Llc | Method of increasing complementarity in a heteroduplex |
| US7582423B2 (en) * | 2001-02-02 | 2009-09-01 | Novici Biotech Llc | Population of polynucleotide sequence variants |
| WO2003054232A2 (en) * | 2001-12-13 | 2003-07-03 | Blue Heron Biotechnology, Inc. | Methods for removal of double-stranded oligonucleotides containing sequence errors using mismatch recognition proteins |
| US20030157495A1 (en) * | 2002-02-01 | 2003-08-21 | Padgett Hal S. | Nucleic acid molecules encoding CEL I endonuclease and methods of use thereof |
| US7078211B2 (en) * | 2002-02-01 | 2006-07-18 | Large Scale Biology Corporation | Nucleic acid molecules encoding endonucleases and methods of use thereof |
| AU2003210259A1 (en) * | 2002-02-21 | 2003-09-09 | Nanogen Recognomics Gmbh | Method for detecting single nucleotide polymorphisms |
| US7563600B2 (en) * | 2002-09-12 | 2009-07-21 | Combimatrix Corporation | Microarray synthesis and assembly of gene-length polynucleotides |
| US7879580B2 (en) * | 2002-12-10 | 2011-02-01 | Massachusetts Institute Of Technology | Methods for high fidelity production of long nucleic acid molecules |
| US7932025B2 (en) * | 2002-12-10 | 2011-04-26 | Massachusetts Institute Of Technology | Methods for high fidelity production of long nucleic acid molecules with error control |
| US20040259125A1 (en) * | 2003-02-26 | 2004-12-23 | Omni Genetics, Inc. | Methods, systems and apparatus for identifying genetic differences in disease and drug response |
| WO2004090170A1 (en) * | 2003-04-02 | 2004-10-21 | Blue Heron Biotechnology, Inc. | Error reduction in automated gene synthesis |
| US20070122817A1 (en) * | 2005-02-28 | 2007-05-31 | George Church | Methods for assembly of high fidelity synthetic polynucleotides |
| US20070269870A1 (en) * | 2004-10-18 | 2007-11-22 | George Church | Methods for assembly of high fidelity synthetic polynucleotides |
| US20070231805A1 (en) * | 2006-03-31 | 2007-10-04 | Baynes Brian M | Nucleic acid assembly optimization using clamped mismatch binding proteins |
| WO2007136834A2 (en) * | 2006-05-19 | 2007-11-29 | Codon Devices, Inc. | Combined extension and ligation for nucleic acid assembly |
| US8053191B2 (en) | 2006-08-31 | 2011-11-08 | Westend Asset Clearinghouse Company, Llc | Iterative nucleic acid assembly using activation of vector-encoded traits |
| JP5926487B2 (ja) | 2007-04-13 | 2016-05-25 | デイナ ファーバー キャンサー インスティチュート，インコーポレイテッド | ＥｒｂＢ療法に耐性である癌を治療するための方法 |
| RU2009146054A (ru) * | 2007-05-14 | 2011-06-20 | Инсайт Дженетикс, Инк. (Us) | Способы скрининга нуклеиновых кислот для выявления одиночных нуклеотидных вариаций |
| US20090305359A1 (en) * | 2008-05-15 | 2009-12-10 | Hatfield G Wesley | Method for producing circular duplex polynucleotides from linear duplex polynucleotides and applications thereof |
| US20110160071A1 (en) * | 2008-06-03 | 2011-06-30 | Baynes Brian M | Novel Proteins and Methods for Designing the Same |
| WO2011056872A2 (en) | 2009-11-03 | 2011-05-12 | Gen9, Inc. | Methods and microfluidic devices for the manipulation of droplets in high fidelity polynucleotide assembly |
| WO2011066185A1 (en) | 2009-11-25 | 2011-06-03 | Gen9, Inc. | Microfluidic devices and methods for gene synthesis |
| EP2504449B1 (de) | 2009-11-25 | 2016-03-23 | Gen9, Inc. | Verfahren und vorrichtung für chipbasierte dna-fehlerreduktion |
| US9217144B2 (en) | 2010-01-07 | 2015-12-22 | Gen9, Inc. | Assembly of high fidelity polynucleotides |
| IL280133B2 (en) | 2010-11-12 | 2023-04-01 | Gen9 Inc | Methods and devices for the synthesis of nucleic acids |
| US10457935B2 (en) | 2010-11-12 | 2019-10-29 | Gen9, Inc. | Protein arrays and methods of using and making the same |
| ES2737957T3 (es) | 2011-08-26 | 2020-01-17 | Gen9 Inc | Composiciones y métodos para el ensamblaje de alta fidelidad de ácidos nucleicos |
| US9150853B2 (en) | 2012-03-21 | 2015-10-06 | Gen9, Inc. | Methods for screening proteins using DNA encoded chemical libraries as templates for enzyme catalysis |
| CN104603286B (zh) | 2012-04-24 | 2020-07-31 | Gen9股份有限公司 | 在体外克隆中分选核酸和多重制备物的方法 |
| LT2864531T (lt) | 2012-06-25 | 2019-03-12 | Gen9, Inc. | Nukleorūgšties konstravimo ir aukšto produktyvumo sekvenavimo būdai |
| WO2014142261A1 (ja) | 2013-03-14 | 2014-09-18 | タカラバイオ株式会社 | 耐熱性のミスマッチエンドヌクレアーゼの利用方法 |
| WO2014165818A2 (en) | 2013-04-05 | 2014-10-09 | T Cell Therapeutics, Inc. | Compositions and methods for preventing and treating prostate cancer |
| ES2943498T3 (es) | 2013-08-05 | 2023-06-13 | Twist Bioscience Corp | Genotecas sintetizadas de novo |
| GB201414745D0 (en) * | 2014-08-19 | 2014-10-01 | Articzymes As | Exonucleases |
| US10975415B2 (en) | 2014-09-11 | 2021-04-13 | Takara Bio Inc. | Methods of utilizing thermostable mismatch endonuclease |
| WO2016126882A1 (en) | 2015-02-04 | 2016-08-11 | Twist Bioscience Corporation | Methods and devices for de novo oligonucleic acid assembly |
| CA2975855A1 (en) | 2015-02-04 | 2016-08-11 | Twist Bioscience Corporation | Compositions and methods for synthetic gene assembly |
| US9981239B2 (en) | 2015-04-21 | 2018-05-29 | Twist Bioscience Corporation | Devices and methods for oligonucleic acid library synthesis |
| GB2557529A (en) | 2015-09-18 | 2018-06-20 | Twist Bioscience Corp | Oligonucleic acid variant libraries and synthesis thereof |
| WO2017053450A1 (en) | 2015-09-22 | 2017-03-30 | Twist Bioscience Corporation | Flexible substrates for nucleic acid synthesis |
| WO2017095958A1 (en) | 2015-12-01 | 2017-06-08 | Twist Bioscience Corporation | Functionalized surfaces and preparation thereof |
| CN109996876A (zh) | 2016-08-22 | 2019-07-09 | 特韦斯特生物科学公司 | 从头合成的核酸文库 |
| WO2018057526A2 (en) | 2016-09-21 | 2018-03-29 | Twist Bioscience Corporation | Nucleic acid based data storage |
| AU2017378492B2 (en) | 2016-12-16 | 2022-06-16 | Twist Bioscience Corporation | Variant libraries of the immunological synapse and synthesis thereof |
| US11550939B2 (en) | 2017-02-22 | 2023-01-10 | Twist Bioscience Corporation | Nucleic acid based data storage using enzymatic bioencryption |
| CA3056388A1 (en) | 2017-03-15 | 2018-09-20 | Twist Bioscience Corporation | Variant libraries of the immunological synapse and synthesis thereof |
| WO2018231872A1 (en) | 2017-06-12 | 2018-12-20 | Twist Bioscience Corporation | Methods for seamless nucleic acid assembly |
| WO2018231864A1 (en) | 2017-06-12 | 2018-12-20 | Twist Bioscience Corporation | Methods for seamless nucleic acid assembly |
| SG11202002194UA (en) | 2017-09-11 | 2020-04-29 | Twist Bioscience Corp | Gpcr binding proteins and synthesis thereof |
| KR20240024357A (ko) | 2017-10-20 | 2024-02-23 | 트위스트 바이오사이언스 코포레이션 | 폴리뉴클레오타이드 합성을 위한 가열된 나노웰 |
| KR20200106067A (ko) | 2018-01-04 | 2020-09-10 | 트위스트 바이오사이언스 코포레이션 | Dna 기반 디지털 정보 저장 |
| EP3814497A4 (de) | 2018-05-18 | 2022-03-02 | Twist Bioscience Corporation | Polynukleotide, reagenzien und verfahren zur nukleinsäurehybridisierung |
| CN113785057A (zh) | 2019-02-26 | 2021-12-10 | 特韦斯特生物科学公司 | 用于抗体优化的变异核酸文库 |
| CA3131689A1 (en) | 2019-02-26 | 2020-09-03 | Twist Bioscience Corporation | Variant nucleic acid libraries for glp1 receptor |
| AU2020298294A1 (en) | 2019-06-21 | 2022-02-17 | Twist Bioscience Corporation | Barcode-based nucleic acid sequence assembly |
| EP4123025A4 (de) | 2020-03-19 | 2024-04-10 | Takara Bio Inc | Hitzebeständige fehlpaarungsendonukleasevariante |
| WO2023191034A1 (ja) * | 2022-03-31 | 2023-10-05 | モデルナ・エンザイマティクス株式会社 | 配列エラーの減少した二本鎖ｄｎａの製造方法 |
Family Cites Families (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5556750A (en) * | 1989-05-12 | 1996-09-17 | Duke University | Methods and kits for fractionating a population of DNA molecules based on the presence or absence of a base-pair mismatch utilizing mismatch repair systems |
| JPH05308999A (ja) * | 1992-05-08 | 1993-11-22 | Sumitomo Metal Ind Ltd | Ｂ型肝炎ウイルスｐｒｅ−Ｃ変異の判定法 |
| FR2709761B1 (fr) * | 1993-09-10 | 1995-11-24 | Pasteur Institut | Procédé de détection de molécules contenant des mésappariements nucléotidiques et de localisation de ces mésappariements, et application à la détection de substitutions ou de délétions de bases . |
| US6027877A (en) * | 1993-11-04 | 2000-02-22 | Gene Check, Inc. | Use of immobilized mismatch binding protein for detection of mutations and polymorphisms, purification of amplified DNA samples and allele identification |
| GB9408344D0 (en) * | 1994-04-27 | 1994-06-15 | St James S University Hospital | Nucleic acid assays |
-
1996
- 1996-12-13 JP JP9522267A patent/JP2000501615A/ja active Pending
- 1996-12-13 EP EP96944843A patent/EP0870060B1/de not_active Expired - Lifetime
- 1996-12-13 CA CA002240346A patent/CA2240346C/en not_active Expired - Fee Related
- 1996-12-13 DE DE69627189T patent/DE69627189T2/de not_active Expired - Lifetime
- 1996-12-13 AT AT96944843T patent/ATE236270T1/de not_active IP Right Cessation
- 1996-12-13 US US08/767,258 patent/US5922539A/en not_active Expired - Lifetime
- 1996-12-13 WO PCT/US1996/020075 patent/WO1997021837A1/en active IP Right Grant
Also Published As
| Publication number | Publication date |
|---|---|
| EP0870060A1 (de) | 1998-10-14 |
| EP0870060B1 (de) | 2003-04-02 |
| CA2240346C (en) | 2007-04-24 |
| CA2240346A1 (en) | 1997-06-19 |
| DE69627189T2 (de) | 2004-02-05 |
| DE69627189D1 (de) | 2003-05-08 |
| JP2000501615A (ja) | 2000-02-15 |
| WO1997021837A1 (en) | 1997-06-19 |
| US5922539A (en) | 1999-07-13 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| UEP | Publication of translation of european patent specification |
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| REN | Ceased due to non-payment of the annual fee |