WO2022078185A1 - Mutant d'interleukine-2 - Google Patents

Mutant d'interleukine-2 Download PDF

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WO2022078185A1
WO2022078185A1 PCT/CN2021/120510 CN2021120510W WO2022078185A1 WO 2022078185 A1 WO2022078185 A1 WO 2022078185A1 CN 2021120510 W CN2021120510 W CN 2021120510W WO 2022078185 A1 WO2022078185 A1 WO 2022078185A1
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mutant
amino acid
il2rα
binding
substitution
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PCT/CN2021/120510
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English (en)
Chinese (zh)
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赵耀
张维
彭璐佳
张建军
朱笑婷
郭建云
董明晖
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北京志道生物科技有限公司
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/52Cytokines; Lymphokines; Interferons
    • C07K14/54Interleukins [IL]
    • C07K14/55IL-2
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • A61K38/17Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • A61K38/19Cytokines; Lymphokines; Interferons
    • A61K38/20Interleukins [IL]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/02Immunomodulators
    • A61P37/04Immunostimulants
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/10Cells modified by introduction of foreign genetic material
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the invention belongs to the field of molecular biology, and particularly relates to an interleukin-2 mutant.
  • Interleukin-2 (IL-2), discovered in 1976 and then known as T cell growth factor (TCGF), is a globular glycoprotein that plays an important role in maintaining the normal function of T lymphocytes and NK cells .
  • Natural IL-2 is a polypeptide consisting of 133 amino acid residues, with a molecular weight of about 15kD, and three cysteine residues located at positions 58, 105 and 125, respectively.
  • Post-translational modifications include Thr glycosylation at position 3, and cysteine residues at positions 58 and 105 form disulfide bonds, which are mainly composed of four ⁇ -helices and some linking sequences (loops) that are essential for their function. ) composed of higher-order structures (Bazan et al., Science 257, 410-413 (1992)).
  • IL-2 is mainly produced by activated T cells, it can promote the proliferation and differentiation of T cells, maintain T cell activity; stimulate the generation, proliferation and activation of natural killer (NK) cells, and induce cytotoxic T lymphocytes (CTL) and induces and activates lymphokine-activated killer (LAK) and tumor-infiltrating lymphocytes; promotes the expression of cytokines and cytolytic molecules by T cells, and promotes the proliferation of B cells (Waldmann et al., Nat Rev Immunol 6, 595-601 (2009) )); these cells have or indirectly have the effect of killing foreign microbial infected cells and cancerous cells, so IL-2 has good antiviral, anticancer effects and wide clinical application potential.
  • NK natural killer
  • LAK lymphokine-activated killer
  • IL-2 mediates its effects by binding to the IL-2 receptor (IL2R), which consists of three subunits, ⁇ (CD25), ⁇ (CD122), and ⁇ (CD132) receptor subunits.
  • IL2R IL-2 receptor
  • ⁇ receptors are mainly expressed on the surface of T suppressor cells (Treg) and some endothelial cells (endothelial cells), while ⁇ and ⁇ receptor subunits are highly expressed on effector T cells (Teff) and NK cells.
  • T suppressor cells Te suppressor cells
  • Teff effector T cells
  • NK cells effector T cells
  • the affinity of IL-2 for the complex form of different receptor subunits is different.
  • IL-2 has the highest affinity for the complex composed of ⁇ , ⁇ and ⁇ receptor subunits.
  • the affinity of the complex composed of IL-2 is moderate (about 100-fold lower), and IL-2 can transmit signals after binding to the combination of both forms of receptor subunits (Minami et al., Annu Rev Immunol 11, 245-268 ( 1993)).
  • IL-2 can transmit signals after binding to the combination of both forms of receptor subunits (Minami et al., Annu Rev Immunol 11, 245-268 ( 1993)).
  • High doses of IL-2 can neutralize the immunosuppression caused by Treg activation by activating a large number of effector T cells, and at the same time, there will be more toxic side effects, as well as activation induced cell apoptosis.
  • IL-2 aldesleukin
  • VLS is caused by the expression of high-affinity receptors ( ⁇ , ⁇ and ⁇ subunits) of IL-2 on endothelial cells (Krieg et al., Proc Nat Acad Sci USA 107, 11906-11 (2010)), so attenuation or elimination of Alpha receptor binding will reduce the function of IL-2 to promote T-suppressive cell proliferation activity, and also reduce the binding to endothelial cell alpha receptors, thereby reducing or eliminating the toxic and side effects caused by IL-2 therapy.
  • high-affinity receptors ⁇ , ⁇ and ⁇ subunits
  • Alpha receptor binding will reduce the function of IL-2 to promote T-suppressive cell proliferation activity, and also reduce the binding to endothelial cell alpha receptors, thereby reducing or eliminating the toxic and side effects caused by IL-2 therapy.
  • the binding sites of IL-2 and ⁇ receptor subunits are mainly at amino acid positions 37, 38, 41, 42, 43, 44, 45, 61, 62, 65, 68 and 72 (Rickert.M et al. (2005). )Science 308:1477-1480), Merck and Roche or other scientific institutions made some mutations around these IL-2 surface amino acids that bind to ⁇ receptor subunits, such as Merck's mutants (R38W, F42K, WO2008003473A2) , reducing the interaction with the alpha receptor subunit to achieve effector T cell activation to enhance efficacy; while Roche's IL-2 mutants (F42A, Y45A and L72G, US 2016/0208017A1), which do not interact with alpha receptors Binding and, but can normally bind to ⁇ and ⁇ receptor subunits, and can exert effects, is currently in clinical practice.
  • reducing or eliminating the interaction of IL-2 with the alpha receptor subunit may be an important aspect of treatment efficacy and reducing the side effects of treatment in cancer patients.
  • the technical problem to be solved by the present invention is to provide an IL-2 mutant with reduced binding to high-affinity receptors.
  • a first aspect of the present invention provides an IL-2 mutant.
  • IL-2 On the basis of IL-2, one or more mutations of substitution, deletion and addition of amino acid sites related to IL2R ⁇ binding are performed to obtain An IL-2 mutant with reduced binding ability to IL2R ⁇ ; wherein, the amino acid sites related to IL2R ⁇ binding are positions 30-75 of wild-type IL-2.
  • the amino acid site related to the binding of IL2R ⁇ is positions 35-75 of wild-type IL-2; alternatively, the amino acid site related to the binding of IL2R ⁇ is positions 37-75 of wild-type IL-2.
  • substitution and addition of amino acid residues that select mutations that can make the IL-2 mutant structure tend to be stable and/or less energetic.
  • one or more mutations of substitutions, deletions and additions are made to one or more amino acids in positions 35-45.
  • amino acids at positions 35-37 and 41-43 were substituted, and amino acids at positions 38-40 were deleted.
  • amino acid at position 45 was also substituted.
  • amino acid position 35 is replaced by K35G or K35M; amino acid position 36 is replaced by L36G or L36H; amino acid position 37 is replaced by T37G; amino acid position 41 is replaced by T41G or T41L; amino acid position 42 is replaced by T41G or T41L
  • substitution of amino acid is F42G or G42D; the substitution of amino acid 43 is K43G; the substitution of amino acid 45 is Y45G.
  • substitutions, deletions and additions are made to one or two amino acids in positions 31-32.
  • amino acids at positions 31-32 were substituted.
  • the 31st amino acid is replaced by Y31G; the 32nd amino acid is replaced by K32G.
  • cysteine at position 125 is also mutated to an amino acid with a smaller side chain.
  • amino acids with smaller side chains include alanine and glycine.
  • amino acid sequence of the wild-type IL-2 is shown in SEQ ID NO.1.
  • amino acid sequence of the IL-2 mutant is shown in SEQ ID NO.3-7.
  • a second aspect of the present invention provides an isolated polynucleotide encoding an IL-2 mutant as described above.
  • a third aspect of the present invention provides an expression vector comprising an isolated polynucleotide as described above.
  • a fourth aspect of the present invention provides a host cell comprising an isolated polynucleotide as described above.
  • a fifth aspect of the present invention provides a composition comprising the IL-2 mutant as described above and a pharmaceutically acceptable carrier.
  • the sixth aspect of the present invention provides the use of the IL-2 mutant as described above in the manufacture of a medicament or a preparation for treating a disease.
  • a seventh aspect of the present invention provides the use of an IL-2 mutant as described above in the manufacture of a composition for stimulating the immune system of an individual.
  • An eighth aspect of the present invention provides a method of producing an IL-2 mutant, the method comprising culturing a host cell as described above under conditions suitable for expressing the IL-2 mutant.
  • IL-2 mutant of the present invention one or more mutations of substitution, deletion and addition of amino acid sites related to IL2R ⁇ binding in IL-2 are performed, thereby reducing the binding with IL2R ⁇ , and can also increase IL-2R ⁇ binding. 2
  • the IL-2 mutant in the present invention is a new direction for reducing VLS or reducing or eliminating the toxic and side effects caused by IL-2 treatment.
  • Figure 1 is a schematic diagram of the three-dimensional structure of IL-2 and IL2R ⁇ (PDB ID 2b5i).
  • Fig. 2 is the sequence comparison diagram (part) of IL-2 mutant and IL-2wt C125A in the embodiment of the present invention.
  • Fig. 3 is an SDS-PAGE electropherogram of IL-2 mutants in the examples of the present invention.
  • “reduction” means adding the reducing agent 2-mercaptoethanol to the loading buffer;
  • “non-reducing” means not adding the reducing agent 2-mercaptoethanol to the loading buffer.
  • FIG. 4 is a CTLL2 cell proliferation experiment of IL-2 mutants in the examples of the present invention.
  • the relative amino acid positions of IL-2 mutants and wild-type IL-2 are calculated based on the amino acid sequence of wild-type IL-2 (such as SEQ ID NO. 1).
  • the nucleotide sequence of wild-type IL-2 is shown in SEQ ID NO.2.
  • IL2R ⁇ refers to interleukin-2 receptor ⁇ , also known as “ ⁇ receptor subunit”
  • IL2R ⁇ refers to interleukin-2 receptor ⁇ , also known as “ ⁇ receptor subunit”
  • IL2R ⁇ refers to interleukin-2 receptor ⁇ , also known as “ ⁇ receptor subunit”
  • IL2R ⁇ refers to interleukin-2 receptor ⁇ , also known as “ ⁇ receptor subunit”
  • IL2R ⁇ refers to the complex formed by interleukin-2 receptor ⁇ and receptor ⁇ , also known as " ⁇ and ⁇ receptor”. body subunit complex”.
  • mutation includes substitutions, deletions and additions to amino acids.
  • the amino acid sites in IL-2 that are related to the binding of IL2R ⁇ , that is, positions 30-75 are mutated.
  • the base sequence for mutation can be IL-2 wild type, or it can be 80%, 85%, 88%, 90%, 91%, 92%, 93%, 94%, 80%, 85%, 88%, 90%, 91%, 92%, 93%, 94%, Sequences of 95%, 96%, 97%, 98%, 99% and more than 99% homology.
  • one or more of substitutions, deletions and additions are made to one or more of amino acids at positions 35-45 to reduce binding of the IL-2 mutant to IL2R ⁇ .
  • one or more of substitutions, deletions and additions are made to one or more of amino acids 31-32 and 35-45 to reduce the interaction of the IL-2 mutant with IL2R ⁇ . combine.
  • IL-2 is located at the 37th, 38th, 41st, 42nd, 43rd, 44th, 45th, 61st, 62th, 65th, 68th and 72nd amino acid positions and IL2R ⁇ . Therefore, through bioinformatics and protein engineering design, mutations, deletions, and additions were performed at the 30th to 75th amino acids to change the binding of IL-2 to IL2R ⁇ .
  • amino acid sequences of the obtained IL-2 mutants are shown in Table 1:
  • Expression hosts can be E. coli or mammalian cells.
  • IL-2wt(C125A) and the mutant were expressed respectively, and purified and prepared relying on the HPC4 tag carried at the C-terminal of the molecule.
  • IL-2wt C125A, SEQ ID NO.1
  • DH10B was transformed, sequenced and maintained to obtain the desired IL-2 wild-type and mutant plasmids.
  • IL-2wt (C125A) and IL-2 mutant were prepared.
  • G418 solution Weigh 250mg Geneticin TM , add 4.5ml ultrapure water to dissolve, dilute to 5ml ultrapure water, filter with 0.22um membrane, store at -20°C
  • PEI solution Weigh 50mg PEI, add 45ml ultrapure water to dissolve, adjust pH to 7.0 with 1M NaOH, dilute to 50ml ultrapure water, filter with 0.22um membrane, and store at -20°C
  • Plasmids were prepared in advance in 2 ml endotoxin-depleted centrifuge tubes.
  • Solution A Plasmid 1 ⁇ g/mL + Opti-MEM TM 33.3ul/mL
  • Liquid B PEI 2 ⁇ g/mL+Opti-MEM TM 33.3ul/mL
  • the cell supernatant was collected by centrifugation at 8500 rpm for 15 min.
  • IL-2wt(C125A) and IL-2 mutants are C-terminally tagged with HPC4 and can therefore be affinity purified using HPC4 antibody-conjugated media followed by gel filtration chromatography (superdex200) for further purification The protein with higher purity was obtained. After purification, it was estimated that the expression level of IL-2wt C125A was ⁇ 9.9 mg/L, and the expression levels of 384 and 386 were 18.6 mg/L and 19.6 mg/L, respectively. SDS-PAGE analysis was performed according to the method described in "Molecular Cloning", and the results are shown in Figure 3.
  • the proteins used in the experiments were all produced by our company, and IL2R ⁇ -his, IL2R ⁇ -Fc/Fc and IL2 mutants were obtained by transient expression and affinity purification of HEK293.
  • Buffer formulation (10 mM HEPES, 150 mM NaCl, 3 mM EDTA, 0.1% BSA and 0.05% Tween 20); ProA sensor (Pall Fortebio, Catalog #18-5010); HISIK sensor (Pall Fortebio, Catalog #18) -5120); BLI equipment is Octet RED96 produced by Pall Fortebio Company; Data acquisition and analysis work were carried out with Data acquisition 11.0 and Data analysis 11.0 software respectively.
  • IL2R ⁇ -Fc/Fc was diluted with buffer to a concentration of 10ug/ml, added to the second column of the 96-well assay plate, and the control program was set to Loading, 600s.
  • the IL2 mutant was diluted to 100nM with buffer, then 1:1 serially diluted down 6 gradients (7 gradients in total) to a concentration of 1.625nM and a concentration of 0, added to the 96-well assay plate 5-9 columns, respectively, control program Medium is set to Association, 200s. Buffer was added to columns 1, 4, 10, and 11 of the 96-well assay plate, and glycine with pH 1.7 was added to column 12. The sample volumes of the above samples and solutions were both 200ul.
  • CTLL-2 T cell
  • the proliferation assay of CTLL-2 is a commonly used assay to measure the activity of interleukin-stimulated immune cells at the cellular level. Therefore, the biological activity of IL-2 mutants was examined here by proliferation experiments of CTLL-2 cells.
  • CTLL-2 cells Resuspend the cells in culture medium containing FBS and Rat-T-Stim.
  • MTS addition add 20 ⁇ l to each well AQueous One Solution Reagent, 37 degrees, 5% CO 2 incubate for 2 to 4 hours.

Abstract

La présente invention divulgue un mutant d'IL-2. Sur la base de l'IL-2 humaine, les sites d'acides aminés associés à une liaison à l'IL2Rα sont soumis à une ou plusieurs mutations par substitution, délétion et addition pour obtenir un mutant d'IL-2 présentant une capacité de liaison réduite à l'IL2Rα, les sites d'acides aminés associés à la liaison à l'IL2Rα étant les positions 30 à 75 de l'IL-2 de type sauvage. L'interaction entre le mutant d'IL-2 de la présente invention et l'IL2Rα est réduite et la quantité d'expression est augmentée.
PCT/CN2021/120510 2020-10-18 2021-09-25 Mutant d'interleukine-2 WO2022078185A1 (fr)

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CN202011114023 2020-10-18
CN202110597623.1 2021-05-31
CN202110597623.1A CN114369153A (zh) 2020-10-18 2021-05-31 一种白介素-2突变体

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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2022320553A1 (en) * 2021-07-30 2024-02-01 Yunquan Biotechnology (Beijing) Co., Ltd. Human interleukin-2 variant and use thereof
CN117903283A (zh) * 2022-10-19 2024-04-19 北京志道生物科技有限公司 一种il-2突变体

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009061853A2 (fr) * 2007-11-05 2009-05-14 Massachusetts Institute Of Technology Polypeptides d'interleukine-2 (il-2) mutants
CN103492411A (zh) * 2011-02-10 2014-01-01 罗切格利卡特公司 突变体白介素-2多肽
TN2013000151A1 (en) * 2011-11-10 2014-11-10 Centro Inmunologia Molecular Polypeptides derived from il-2 having agonist activity for the therapy of cancer and chronic infections
CN104231068A (zh) * 2014-01-27 2014-12-24 苏州发士达生物科技有限公司 人白细胞介素ii突变体及其应用
CN111018961A (zh) * 2019-12-17 2020-04-17 北京志道生物科技有限公司 白介素-2衍生物

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009061853A2 (fr) * 2007-11-05 2009-05-14 Massachusetts Institute Of Technology Polypeptides d'interleukine-2 (il-2) mutants
CN103492411A (zh) * 2011-02-10 2014-01-01 罗切格利卡特公司 突变体白介素-2多肽
TN2013000151A1 (en) * 2011-11-10 2014-11-10 Centro Inmunologia Molecular Polypeptides derived from il-2 having agonist activity for the therapy of cancer and chronic infections
CN104231068A (zh) * 2014-01-27 2014-12-24 苏州发士达生物科技有限公司 人白细胞介素ii突变体及其应用
CN111018961A (zh) * 2019-12-17 2020-04-17 北京志道生物科技有限公司 白介素-2衍生物

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