WO2021217773A1 - 转氨酶突变体及其应用 - Google Patents

转氨酶突变体及其应用 Download PDF

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WO2021217773A1
WO2021217773A1 PCT/CN2020/093528 CN2020093528W WO2021217773A1 WO 2021217773 A1 WO2021217773 A1 WO 2021217773A1 CN 2020093528 W CN2020093528 W CN 2020093528W WO 2021217773 A1 WO2021217773 A1 WO 2021217773A1
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mutant
transaminase
pet
amino acid
activity
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PCT/CN2020/093528
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French (fr)
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洪浩
詹姆斯•盖吉
肖毅
张娜
焦学成
马玉磊
牟慧艳
曹珊
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凯莱英医药集团(天津)股份有限公司
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Priority to JP2022566015A priority Critical patent/JP7462795B2/ja
Priority to KR1020227038055A priority patent/KR20220161459A/ko
Priority to US17/997,419 priority patent/US20230235300A1/en
Priority to EP20933800.3A priority patent/EP4144837A4/en
Publication of WO2021217773A1 publication Critical patent/WO2021217773A1/zh

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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
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    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
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    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
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    • C12R2001/01Bacteria or Actinomycetales ; using bacteria or Actinomycetales

Definitions

  • the invention relates to the field of enzyme production, in particular to a transaminase mutant and its application.
  • Chiral amines are the structural units of many important biologically active molecules and are key intermediates for the synthesis of many chiral drugs. Many important neurological drugs, cardiovascular drugs, antihypertensive drugs, anti-infective drugs, etc. are synthesized using chiral amines as intermediates. The preparation of chiral amines is mainly achieved through chemical reduction methods. There are disadvantages such as harsh reaction conditions, the use of toxic transition metal catalysts, and low product stereoselectivity. Currently, the use of biocatalysis to prepare chiral compounds in the pharmaceutical industry is widely used and has broad prospects.
  • Omega-transaminase can catalyze ketone substrates and efficiently prepare chiral amines through stereoselective transamination. Because of its high selectivity, high conversion rate and mild reaction conditions, it has received extensive attention from researchers. However, in industrial applications, most of the wild transaminases have shortcomings such as low catalytic efficiency, poor stereoselectivity, and weak stability, so that there are not many transaminase that can really be used.
  • the invention patent application with application publication number CN107828751A discloses an ⁇ -transaminase mutant L107I derived from Actinobacteria sp., which can highly selectively catalyze acetophenone compounds to obtain chiral ammonia products.
  • the reaction is as follows:
  • the initial activity is less than 10%, the activity is low, the amount of enzyme added during the reaction is large, and the post-processing is difficult.
  • the main purpose of the present invention is to provide a transaminase mutant and its application to solve the problem that the existing transaminase is not suitable for industrial production.
  • a transaminase mutant is provided. Compared with the amino acid sequence shown in SEQ ID NO:1, the amino acid sequence of the transaminase mutant includes at least one mutation site as follows: L166 , K149, K146, A168, H73, F133, H82, E24, V194, T294, A295, G235 and F236.
  • amino acid sequence of the aminotransferase mutant includes at least one mutation site as follows: L166I/V, K149Q/V/C/I/W/M/Y/H/L/F/R, K146R/M/A/P , A168M/V/I/S/P/F, H73T/N/C/Q/R/W/M/K/S, F133S/Q/M/R/A/D, H82S ⁇ Q ⁇ E ⁇ T ⁇ Y, E24V/S/A/F, V194I/S/A/H/N, T294Q/W/V/A/E/R/Y/F, A295S/Y/I/M/G, G235Y/H And F236I/T/P/M/V/D/S, Y9N, S132K, R145K/P/S/M/Y, L151R/M/A, T178M, "/" means "or”; or aminotransferase mutants include
  • amino acid sequence of the aminotransferase mutant has any combination of mutation sites in the following table:
  • a DNA molecule which encodes any of the above-mentioned aminotransferase mutants.
  • a recombinant plasmid is provided, which is connected with any of the above-mentioned DNA molecules.
  • a host cell which contains any of the above recombinant plasmids.
  • the host cell includes a prokaryotic cell or a eukaryotic cell; preferably, the prokaryotic cell is Escherichia coli.
  • a method for producing chiral amines includes: using any of the above-mentioned aminotransferase mutants to catalyze ketone compounds Carry out transamination reaction to produce product
  • R 1 and R 2 each independently represent an optionally substituted or unsubstituted alkyl group, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted aryl group
  • R 1 and R 2 can be singly or combined with each other to form a substituted or unsubstituted ring.
  • R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1 to 20 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted aryl group.
  • R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1-10 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted Aryl; preferably, substitution refers to a halogen atom, a nitrogen atom, a sulfur atom, a hydroxyl group, a nitro group, a cyano group, a methoxy group, an ethoxy group, a carboxyl group, a carboxymethyl group, a carboxyethyl group or a methylenedioxy group replace.
  • the ketone compound is Or the ketone compound is an acetophenone compound substituted or unsubstituted at any position on the benzene ring, catalyzed by the aminotransferase mutant
  • Carry out transamination reaction to produce product R represents that any position on the benzene ring is substituted by halogen, nitro, methyl or methoxy; preferably, the halogen is a fluorine atom; more preferably, the fluorine atom is substituted at the meta position of the benzene ring; preferably, the nitro group is substituted on the benzene ring Ortho substitution; preferably, acetophenone compounds are
  • the mutant of the present invention has improved catalytic activity for transamination of ketone substrates, and is suitable for the industrial production of chiral amines.
  • Naturally occurring or wild type is the opposite of “mutant” and refers to the form found in nature.
  • a naturally-occurring or wild-type polypeptide or polynucleotide sequence is a sequence that exists in an organism, it can be isolated from a source in nature, and has not been intentionally modified or changed by man.
  • the "recombination" of cells, nucleic acids, or polypeptides when referring to, for example, the "recombination" of cells, nucleic acids, or polypeptides, it means that they have been modified in a way that does not exist in nature, or are in the same form as they exist in nature, but are made of synthetic materials and/or through the use of recombinant materials. It is prepared or derived by technological processing, or corresponds to a cell, nucleic acid or polypeptide in a natural or inherent form. Among them, non-limiting examples include recombinant cells expressing genes other than the inherent (non-recombinant) form in cells or expressing inherent genes at different levels.
  • Percentage of sequence identity refers to the comparison between polynucleotide sequences or amino acid sequences, and is determined by comparing two optimally aligned sequences across a comparison window, where the polynucleotide sequence or amino acid sequence is in the comparison window. Compared with the reference sequence, the part in may include additions or deletions (ie, gaps) for the best alignment of the two sequences. The percentage can be calculated as follows: by determining the number of positions where the same nucleic acid base or amino acid residue appears in the two sequences to generate the number of matching positions, dividing the number of matching positions by the total number of positions in the comparison window, and The result is multiplied by 100 to get the percentage of sequence identity.
  • the percentage can be calculated as follows: by determining the number of positions where the same nucleic acid base or amino acid residue or the nucleic acid base or amino acid residue is aligned with the gap in the two sequences to generate the number of matching positions, the match Divide the number of positions by the total number of positions in the comparison window and multiply the result by 100 to get the percentage of sequence identity.
  • reference sequence refers to a designated sequence used as a basis for sequence comparison. The reference sequence may be a subset of a larger sequence, for example, a segment of a full-length gene or polypeptide sequence.
  • Site-directed mutagenesis refers to the introduction of desired changes (usually to characterize changes in a favorable direction) into the target DNA fragment (either genome or plasmid) by polymerase chain reaction (PCR) and other methods, including the addition of bases , Deletion, point mutation, etc. Site-directed mutagenesis can quickly and efficiently improve the traits and characterization of the target protein expressed by DNA, which is a very useful method in gene research.
  • the directed evolution of enzymes is a kind of irrational design of proteins, artificially creating special evolutionary conditions, simulating natural evolutionary mechanisms, modifying genes in vitro, applying error-prone PCR, DNA shuffling and other technologies, combined with efficient screening systems to obtain New enzymes with expected properties.
  • this application uses the method of enzyme evolution to analyze the ⁇ -transaminase mutant L107I (SEQ ID NO:1) derived from Actinobacteria sp. ) To evolve.
  • the sequence of the ⁇ -transaminase mutant L107I (SEQ ID NO:1) derived from Actinobacteria sp. is as follows:
  • Saturation mutation is a method to obtain mutants in which the target amino acids are replaced by 19 other amino acids in a short time by modifying the coding gene of the target protein. This method is not only a powerful tool for directed modification of proteins, but also an important method for the study of protein structure-function relationships. Saturation mutations can often obtain more ideal evolutionary bodies than single point mutations. For these problems that the site-directed mutation method cannot solve, it is precisely the unique point that the saturation mutation method is good at.
  • mutants with increased activity obtained by saturation mutations beneficial amino acid positions can be combined to obtain mutants with better traits.
  • the method for constructing double-point mutations in combinatorial mutations is the same as that for single-point mutations, using the whole plasmid PCR method. Simultaneously mutate two or more sites of multiple-point mutations by using overlap extension PCR amplification to obtain a mutated gene containing multiple-point mutations. After the two ends are digested with restriction enzymes, they are ligated to the expression vector and transformed into The Escherichia coli cells were spread on an LB culture dish containing 100 ⁇ g/mL ampicillin and cultured overnight at 37° C. to obtain combined mutants, which were identified by sequencing.
  • the mutant plasmid obtained by saturation mutation and combined mutation is transformed into E. coli cells and expressed in E. coli. Then, the crude enzyme solution is obtained by sonicating the cells. The best conditions for inducing expression of transaminase: 25°C, 0.2mM IPTG overnight induction.
  • transaminase mutants After obtaining transaminase mutants with greatly increased activity, they are randomly mutated using error-prone PCR methods to construct a high-quality mutant library, develop appropriate high-throughput screening methods, screen the library, and obtain mutations with further increased activity body.
  • Error-prone PCR means PCR under error-prone conditions, that is, a PCR technique that easily causes errors in the copied DNA sequence, also known as mismatch PCR or error-prone PCR. Specifically, it refers to the use of low-fidelity TaqDNA polymerase and changing PCR reaction conditions to reduce the fidelity of DNA replication, increase base mismatches during the synthesis of new DNA strands, and cause more point mutations in the amplified products. A method of inducing DNA sequence variation in vitro.
  • Error-prone PCR is currently the simplest and most effective in vitro random mutagenesis technique for genes. Its principle is: the isomerization of bases provides the possibility of mismatches.
  • the four bases that make up DNA all have tautomers.
  • the three oxygen-containing bases of guanine (G), cytosine (C) and thymine (T) have two tautomers: keto and enol.
  • Adenine (A) and thymine are two nitrogenous bases, and there are amine and imine tautomers.
  • G, C and T mainly exist as ketone structure, and the ratio of enol structure is extremely low.
  • the nitrogen atoms on the two nitrogen-containing bases of A and T mainly exist in the state of amino (NH2), and in the state of imino (NH).
  • the rate of state existence is extremely low.
  • the difference in the position of the hydrogen atom between different isomers and the deviation of the electron cloud at the same position can change the pairing form of the bases, so that mismatches may appear on the copied daughter strands. For example, when thymine exists in a ketone structure, it pairs with adenine, and when it exists in an enol structure, it pairs with guanine. In this way, there are unstable bases where A can be matched with C and T can be matched with G. Yes, resulting in mismatches.
  • TaqDNA polymerase has the highest mismatch rate.
  • Taq DNA polymerase is the most active one among the heat-resistant DNA polymerases found. It has 5'-3' exonuclease activity, but not 3'-5' exonuclease activity. Therefore, it has a strong effect on certain mononuclear DNA polymerases during synthesis. There is no correction function for nucleotide mismatches, so the probability of mismatches is higher than that of DNA polymerases with 3'-5' proofreading activity.
  • the fidelity of DNA polymerase can be reduced by a variety of methods, including the use of 4 different concentrations of dNTP, the addition of Mn 2+ , and the increase of Mg 2+ concentration.
  • MnC1 2 is a mutagenic factor of DNA polymerase. Adding Mn 2+ can reduce the specificity of the polymerase to the template and increase the mismatch rate; the unbalanced concentration of 4 dNTPs can increase the probability of base misincorporation and achieve mismatches.
  • Mg 2+ has the effect of activating Taq enzyme, increasing the concentration of Mg 2+ to exceed the normal dosage, which can stabilize non-complementary base pairs; increasing the dosage of Taq DNA polymerase and increasing the elongation time of each cycle can increase mismatches Probability of terminal extension; reducing the initial template concentration will increase the proportion of variant templates in subsequent PCR cycles.
  • a transaminase mutant is provided.
  • the amino acid sequence of the transaminase mutant includes at least one mutation site as follows: L166 , K149, K146, A168, H73, F133, H82, E24, V194, T294, A295, G235 and F236.
  • the mutant of the present invention has improved catalytic activity for transamination of ketone substrates, and is suitable for the industrial production of chiral amines.
  • the amino acid sequence of the aminotransferase mutant further includes one of the following mutation sites: L166I/V, K149Q/V/C/I/W/M/Y/H/L/F/R, K146R/M/A/P, A168M/V/I/S/P/F, H73T/N/C/Q/R/W/M/K/S, F133S/Q/M/R/A/D, H82S ⁇ Q ⁇ E ⁇ T ⁇ Y, E24V/S/A/F, V194I/S/A/H/N, T294Q/W/V/A/E/R/Y/F, A295S/Y/I/ M/G, G235Y/H and F236I/T/P/M/V/D/S, Y9N, S132K, R145K/P/S/M/Y, L151R/M/A, T178M, "/" means "or "; or the transaminase
  • amino acid sequence of the aminotransferase mutant has any combination of mutation sites in the foregoing table.
  • a DNA molecule which encodes any of the aforementioned aminotransferase mutants.
  • the transaminase mutant encoded by the DNA molecule has good transamination catalytic activity on ketone substrates.
  • DNA molecules of the present invention may also exist in the form of "expression cassettes".
  • "Expression cassette” refers to a linear or circular nucleic acid molecule, covering DNA and RNA sequences that can direct the expression of a specific nucleotide sequence in an appropriate host cell. Generally speaking, it includes a promoter operatively linked to the target nucleotide, which is optionally operatively linked to a termination signal and/or other regulatory elements.
  • the expression cassette may also include sequences required for proper translation of the nucleotide sequence.
  • the coding region usually encodes the target protein, but also encodes the target functional RNA in the sense or antisense direction, such as antisense RNA or untranslated RNA.
  • the expression cassette containing the target polynucleotide sequence may be chimeric, meaning that at least one of its components is heterologous to at least one of the other components.
  • the expression cassette may also be naturally occurring, but obtained by efficient recombination for heterologous expression.
  • a recombinant plasmid which contains any of the aforementioned DNA molecules.
  • the DNA molecule in the recombinant plasmid is placed in an appropriate position of the recombinant plasmid, so that the DNA molecule can replicate, transcribe or express correctly and smoothly.
  • plasmid used in the present invention includes any plasmid, cosmid, bacteriophage or Agrobacterium binary nucleic acid molecule in double-stranded or single-stranded linear or circular form, preferably a recombinant expression plasmid, which may be a prokaryotic expression plasmid or It can be a eukaryotic expression plasmid, but preferably a prokaryotic expression plasmid.
  • the recombinant plasmid is selected from pET-22a(+), pET-22b(+), pET-3a(+), pET-3d(+) ), pET-11a(+), pET-12a(+), pET-14b(+), pET-15b(+), pET-16b(+), pET-17b(+), pET-19b(+) , PET-20b(+), pET-21a(+), pET-23a(+), pET-23b(+), pET-24a (+), pET-25b(+), pET-26b(+), pET-27b(+), pET-28a(+), pET-29a(+), pET-30a(+), pET-31b(+), pET-32a(+), pET-35b(+), pET -38b(+), pET-39b(+), pET-40b(+),
  • a host cell in a fourth exemplary embodiment of the present application, contains any of the aforementioned recombinant plasmids.
  • Suitable host cells for the present invention include but are not limited to prokaryotic cells, yeast or eukaryotic cells.
  • the prokaryotic cells are eubacteria, such as gram-negative bacteria or gram-positive bacteria. More preferably, the prokaryotic cells are E. coli BL21 cells or E. coli DH5 ⁇ competent cells.
  • a method for producing chiral amines comprising: using any of the above-mentioned aminotransferase mutants to catalyze ketone compounds Carry out transamination reaction to generate chiral amine compounds
  • R 1 and R 2 each independently represent an optionally substituted or unsubstituted alkyl group, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted aryl group
  • R 1 and R 2 can be singly or combined with each other to form a substituted or unsubstituted ring.
  • R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1 to 20 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted group.
  • R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1-10 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optional A substituted or unsubstituted aryl group; preferably, substitution refers to a halogen atom, a nitrogen atom, a sulfur atom, a hydroxyl group, a nitro group, a cyano group, a methoxy group, an ethoxy group, a carboxyl group, a carboxymethyl group, a carboxyethyl group Or methylenedioxy substitution.
  • the ketone compound is Or it is a substituted or unsubstituted acetophenone compound at any position on the benzene ring, catalyzed by aminotransferase mutants
  • Carry out transamination reaction to produce product R represents that any position on the benzene ring is substituted by halogen, nitro, methyl or methoxy; preferably, the halogen is a fluorine atom; more preferably, the fluorine atom is substituted at the meta position of the benzene ring; preferably, the nitro group is substituted on the benzene ring Ortho substitution
  • the acetophenone compound is The transaminase mutant of the present application has the highest catalytic activity for the above two acetophenone compounds.
  • the mother parent is the mutant SEQ ID NO:1; the conversion rate of the enzyme to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 Times, ++ means an increase of 5-10 times.
  • the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times.
  • the iterative saturated mutation evolution method can be used to superimpose the mutation sites with increased activity to avoid the evolutionary result being limited to the local highest point instead of reaching the global highest point during the evolution process, and to obtain mutants with increased activity.
  • the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times, +++ means an increase of 10-20 times, and ++++ means an increase of 20-30 times.
  • the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times, +++ means an increase of 10-20 times, ++++ means an increase of 20-30 times, +++++ means an increase of 30-50 times, ++++++ means an increase of greater than 50 times.
  • the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times, +++ means an increase of 10-20 times, ++++ means an increase of 20-30 times, +++++ means an increase of 30-50 times, ++++++ means an increase of greater than 50 times.
  • this application uses a method of combining rational design and random mutation to rationally modify the protein of the existing reductase mutant, and The obtained mutants were screened for catalytic activity and stereoselectivity using the substrate ketones of the present application, and finally a mutant strain with high selectivity and high activity was obtained, and the strains containing these mutants were applied to the ketones described in the present application.
  • the production efficiency of the corresponding chiral alcohol compound can be improved.

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Abstract

本发明提供了一种转氨酶突变体及其应用。其中,该转氨酶突变体与SEQ ID NO:1所示的氨基酸序列相比,该转氨酶突变体的氨基酸序列包括如下至少一种突变位点:L166、K149、K146、A168、H73、F133、H82、E24、V194、T294、A295、G235及F236。本发明的突变体,对酮类底物进行转氨反应的催化活性得到提高,适用于手性胺的工业化生产。

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转氨酶突变体及其应用 技术领域
本发明涉及酶生产领域,具体而言,涉及一种转氨酶突变体及其应用。
背景技术
手性胺是许多重要生物活性分子的结构单元,是合成很多手性药物的关键中间体。有许多重要的神经类药物、心血管药物、抗高血压药物、抗感染药物等都是以手性胺作为中间体来进行合成的。手性胺的制备主要通过化学还原的方法实现,反应中存在反应条件苛刻、使用有毒的过渡态金属催化剂、产品立体选择性低等缺点。当前,在制药产业中利用生物催化法制备手性化合物应用广泛,具有广阔前景。
ω-转氨酶能够催化酮类底物,通过立体选择性地转氨基作用,高效制备手性胺。因其具有高选择性、高转化率及温和的反应条件等优点,受到研究人员的广泛关注。但在工业化应用时,大多数的野生转氨酶存在催化效率低、立体选择性差、稳定性弱等缺点,使得真正能够被应用的转氨酶并不多。
申请公开号为CN107828751A的发明专利申请公开了一种来源于Actinobacteria sp.的ω-转氨酶突变体L107I,该突变体可以高选择性的催化苯乙酮类化合物得到手性氨产品,反应如下:
Figure PCTCN2020093528-appb-000001
但是其初始活性小于10%,活性较低,反应时添加的酶量较多,后处理困难。
发明内容
本发明的主要目的在于提供一种转氨酶突变体及其应用,以解决现有的转氨酶不适合工业化生产的问题。
为了实现上述目的,根据本发明的一个方面,提供了一种转氨酶突变体,与SEQ ID NO:1所示的氨基酸序列相比,该转氨酶突变体的氨基酸序列包括如下至少一个突变位点:L166、K149、K146、A168、H73、F133、H82、E24、V194、T294、A295、G235及F236。
进一步地,转氨酶突变体的氨基酸序列包括如下至少一个突变位点:L166I/V、K149Q/V/C/I/W/M/Y/H/L/F/R、K146R/M/A/P、A168M/V/I/S/P/F、H73T/N/C/Q/R/W/M/K/S、F133S/Q/M/R/A/D、H82S\Q\E\T\Y、E24V/S/A/F、V194I/S/A/H/N、T294Q/W/V/A/E/R/Y/F、A295S/Y/I/M/G、G235Y/H及F236I/T/P/M/V/D/S,Y9N、S132K、R145K/P/S/M/Y、L151R/M/A、T178M,“/”表示“或”;或者转氨酶突变体包括上述突变位点,且与具有突变位点的氨基酸序列有80%以上,优选90%以上,更优选95%以上同一性的氨基酸序列。
进一步地,转氨酶突变体的氨基酸序列具有如下表中的任一组合的突变位点:
Figure PCTCN2020093528-appb-000002
Figure PCTCN2020093528-appb-000003
Figure PCTCN2020093528-appb-000004
为了实现上述目的,根据本发明的第二个方面,提供了一种DNA分子,该DNA分子编码上述任一种转氨酶突变体。
为了实现上述目的,根据本发明的第三个方面,提供了一种重组质粒,重组质粒连接有上述任一种DNA分子。
为了实现上述目的,根据本发明的第四个方面,提供了一种宿主细胞,宿主细胞含有上述任一种重组质粒。
进一步地,宿主细胞包括原核细胞或真核细胞;优选原核细胞为大肠杆菌。
为了实现上述目的,根据本发明的第五个方面,提供了一种生产手性胺的方法,方法包括:采用上述任一种转氨酶突变体催化酮类化合物
Figure PCTCN2020093528-appb-000005
进行转氨反应,生成产物
Figure PCTCN2020093528-appb-000006
其中,R 1和R 2分别独立的表示任选取代或未被取代的烷基、任选取代或未被取代的芳烷基、或任选取代或未被取代的芳基,R 1和R 2可单独或两者互相结合形成取代或未被取代的环。
进一步地,R 1和R 2为碳原子数为1-20的任选取代或未被取代的烷基、任选取代或未被取代的芳烷基、或任选取代或未被取代的芳基;优选的,R 1和R 2为碳原子数1-10的任选取代或未被取代的烷基、任选取代或未被取代的芳烷基、或任选取代或未被取代的芳基;优选的,取代是指被卤素原子、氮原子、硫原子、羟基、硝基、氰基、甲氧基、乙氧基、羧基、羧甲基、羧乙基或亚甲二氧基取代。
进一步地,酮类化合物为
Figure PCTCN2020093528-appb-000007
或者酮类化合物为苯环上任意位置被取代或未被取代的苯乙酮类化合物,转氨酶突变体催化
Figure PCTCN2020093528-appb-000008
进行转氨反应,生成产物
Figure PCTCN2020093528-appb-000009
R表示苯环上任意位置被卤素、硝基、甲基或甲氧基取代;优选的,卤素为氟原子;更优选氟原子在苯环的间位取代;优选的,硝基在苯环的邻位取代;优选的,苯乙酮类化合物为
Figure PCTCN2020093528-appb-000010
应用本发明的技术方案,本发明的突变体,对酮类底物进行转氨反应的催化活性得到提高,适用于手性胺的工业化生产。
具体实施方式
需要说明的是,在不冲突的情况下,本申请中的实施例及实施例中的特征可以相互组合。下面将结合实施例来详细说明本发明。
“天然存在的”或“野生型”与“突变体”相对,指在自然界中发现的形式。例如,天然存在的或野生型的多肽或多核苷酸序列是存在于生物体的序列,它可以从自然界中的来源中分离,并且没有被人工所特意地修饰或改变。
本申请中,涉及例如,细胞、核酸或多肽“重组”时,是指已经以自然界中未存在的方式进行修饰的,或与自然界中存在的形式相同,但是由合成材料和/或通过使用重组技术的处理制备或衍生而得到,或对应于天然或固有形式的细胞、核酸或多肽。其中,非限制性的实例包括在细胞中表达固有(非重组)形式之外的基因或以不同水平表达固有基因的重组细胞。
“序列同一性的百分比”是指多核苷酸序列或氨基酸序列之间的对比,并且通过跨比较窗比较两条最佳比对的序列来确定,其中,多核苷酸序列或氨基酸序列在比较窗中的部分与参考序列相比可以包括添加或缺失(即,空位),以用于两个序列的最佳比对。百分比可以如 下计算:通过确定两个序列中出现相同的核酸碱基或氨基酸残基的位置的数目,以产生匹配位置的数目,将匹配位置的数目除以比较窗中位置的总数目,并将结果乘以100以得到序列同一性的百分比。可选地,百分比可以如下计算:通过确定两个序列中出现相同的核酸碱基或氨基酸残基或者核酸碱基或氨基酸残基与空位对齐的位置的数目,以产生匹配位置的数目,将匹配位置的数目除以比较窗中位置的总数目,并将结果乘以100以得到序列同一性的百分比。其中,“参考序列”指用作序列比较的基础的指定序列。参考序列可以是更大序列的子集,例如,全长基因或多肽序列的区段。
定点突变:是指通过聚合酶链式反应(PCR)等方法向目的DNA片段(可以是基因组,也可以是质粒)中引入所需变化(通常是表征有利方向的变化),包括碱基的添加、删除、点突变等。定点突变能迅速、高效的提高DNA所表达的目的蛋白的性状及表征,是基因研究工作中一种非常有用的手段。
酶的定向进化是一种蛋白质的非理性设计,人为创造特殊的进化条件,模拟自然进化机制,在体外改造基因,应用易错PCR、DNA改组(DNA shuffling)等技术,结合高效筛选系统获得具有预期特性的新酶。
为提高现有技术中的转氨酶的酶活性,减少酶的使用量,降低后处理的难度,本申请通过酶进化的方法对来源于Actinobacteria sp.的ω-转氨酶突变体L107I(SEQ ID NO:1)进行进化。
来源于Actinobacteria sp.的ω-转氨酶突变体L107I(SEQ ID NO:1)的序列如下:
Figure PCTCN2020093528-appb-000011
以来源于Actinobacteria sp.的ω-转氨酶突变体L107I为模板,设计了17对饱和突变引物(F133、L166、A295、A168、V80、T293、W167、G235、W203、F236、T294、K149、H73、Y78、K146、V194、R145),利用饱和突变手段,以pET22b(+)为表达载体,获得突变质粒。
饱和突变是通过对目的蛋白的编码基因进行改造,短时间内获取靶位点氨基酸分别被其它19种氨基酸替代的突变体的一种方法。此方法不仅是蛋白质定向改造的强有力工具,而且是蛋白质结构-功能关系研究的重要手段。饱和突变往往能获得比单点突变更为理想的进化体。而对于定点突变方法不能解决的这些问题,恰恰是饱和突变方法所擅长的独特之处。
在饱和突变获得活性提高的突变体基础上,可对有益的氨基酸位点进行组合,以获得性状更优的突变体。组合突变中双点突变的构建方法和单点突变的构建方法一样,采用全质粒PCR法构建。同时突变2个及以上位点的多点突变通过采用重叠延伸PCR扩增进行,获得含 多点突变的突变基因,两端经限制性内切酶酶切后,连接到表达载体上,转化至大肠杆菌细胞内,涂布于含有100μg/mL氨苄青霉素的LB培养皿中,37℃培养过夜,获得组合突变体,测序鉴定。
经饱和突变和组合突变获得的突变质粒转化至大肠杆菌细胞内,在大肠杆菌中表达。然后通过超声破碎细胞的方法获得粗酶液。转氨酶诱导表达的最佳条件:25℃,0.2mM IPTG过夜诱导。
获得活性大幅提高的转氨酶突变体后,使用易错PCR的方法对其进行随机突变,构建高质量的突变体库,开发合适的高通量筛选方法,对文库进行筛选,获得活性进一步提高的突变体。
易错PCR:意为易错条件下的PCR,即容易使复制出的DNA序列出现错误的PCR技术,又称错配PCR或倾向错误PCR。具体是指通过利用低保真度TaqDNA聚合酶和改变PCR反应条件,降低DNA复制的保真度,在新DNA链合成过程中增加碱基错配,从而使扩增产物出现较多点突变的一种体外诱导DNA序列变异的方法。
易错PCR是目前最简单、有效的基因体外随机诱变技术,其原理是:碱基的异构为错配提供了可能,组成DNA的4种碱基都有互变异构体存在,其中鸟嘌呤(G)、胞嘧啶(C)和胸腺嘧啶(T)3种含氧碱基有酮式和烯醇式两种互变异构体。腺嘌呤(A)和胸腺嘧啶两种含氮碱基,有胺式、亚胺式两种互变异构体。G、C和T主要以酮式结构存在,烯醇式结构的比率极低,A和T两种含氮碱基上的氮原子主要以氨基(NH2)状态存在,以亚胺基(NH)状态存在的比率极低。不同同分异构体之间氢原子位置的不同及同一位置电子云偏离方向的不同,可使得碱基的配对形式发生改变,这样在复制后的子链上就可能出现错配。例如当胸腺嘧啶以酮式结构存在时,与腺嘌呤配对,而以烯醇式结构存在时,与鸟嘌呤配对,这样就出现了A能配上C,T能配上G的不稳定碱基对,从而造成错配。
在已知的几种耐热DNA聚合酶中,TaqDNA聚合酶的错配率最高。Taq DNA聚合酶是发现的耐热DNA聚合酶中活性最高的一种,具有5'-3'外切酶活性,不具3'-5'外切酶活性,因此在合成中对某些单核苷酸错配没有校正功能,所以比有3'-5'校对活性的DNA聚合酶发生错配的概率较高。DNA聚合酶的保真性可以通过多种方法来降低,包括使用4种浓度不同dNTP、添加Mn 2+、提高Mg 2+浓度等。几种诱变方法导致扩增DNA链碱基变异的机理各不相同。MnC1 2是DNA聚合酶的诱变因子,加入Mn 2+可以降低聚合酶对模板的特异性,提高错配率;4种dNTPs浓度的不平衡可以提高碱基错误掺入的概率,实现错配;Mg 2+具有激活Taq酶的作用,增加Mg 2+浓度,使之超过正常用量,能稳定非互补的碱基对;提高Taq DNA聚合酶用量、增加每个循环延伸时间,可以增加错配终端延伸的概率;降低起始模板浓度,会使后面PCR循环的变异模板比例增加。
因此,在上述研究结果的基础上,申请人提出了本申请的技术方案。在本申请一种典型的实施方式中,提供了一种转氨酶突变体,与SEQ ID NO:1所示的氨基酸序列相比,该转氨 酶突变体的氨基酸序列包括如下至少一种突变位点:L166、K149、K146、A168、H73、F133、H82、E24、V194、T294、A295、G235及F236。本发明的突变体,对酮类底物进行转氨反应的催化活性得到提高,适用于手性胺的工业化生产。
在一种优选的实施例中,转氨酶突变体的氨基酸序列还包括如下突变位点之一:L166I/V、K149Q/V/C/I/W/M/Y/H/L/F/R、K146R/M/A/P、A168M/V/I/S/P/F、H73T/N/C/Q/R/W/M/K/S、F133S/Q/M/R/A/D、H82S\Q\E\T\Y、E24V/S/A/F、V194I/S/A/H/N、T294Q/W/V/A/E/R/Y/F、A295S/Y/I/M/G、G235Y/H及F236I/T/P/M/V/D/S,Y9N、S132K、R145K/P/S/M/Y、L151R/M/A、T178M,“/”表示“或”;或者所述转氨酶突变体含有上述突变位点,且与具有上述突变位点的氨基酸序列有80%以上,优选90%以上,更优选95%以上同一性的氨基酸序列。上述转氨酶突变体可以进一步提高转氨反应的催化活性。
在一种更优选的实施例中,转氨酶突变体的氨基酸序列具有前述表中任一组合的突变位点。
在本申请第二种典型的实施方式中,提供了一种DNA分子,该DNA分子编码上述任一种转氨酶突变体。该DNA分子编码的上述转氨酶突变体对酮类底物具有很好的转氨基催化活性。
本发明的上述DNA分子还可以以“表达盒”的形式存在。“表达盒”是指线性或环状的核酸分子,涵盖了能够指导特定核苷酸序列在恰当宿主细胞中表达的DNA和RNA序列。一般而言,包括与目标核苷酸有效连接的启动子,其任选的是与终止信号和/或其他调控元件有效连接的。表达盒还可以包括核苷酸序列正确翻译所需的序列。编码区通常编码目标蛋白,但在正义或反义方向也编码目标功能RNA,例如反义RNA或非翻译的RNA。包含目标多核苷酸序列的表达盒可以是嵌合的,意指至少一个其组分与其至少一个其他组分是异源的。表达盒还可以是天然存在的,但以用于异源表达的有效重组形成获得的。
在本申请第三种典型的实施方式中,提供一种重组质粒,该重组质粒含有上述任一种DNA分子。上述重组质粒中的DNA分子置于重组质粒的适当位置,使得上述DNA分子能够正确地、顺利地复制、转录或表达。
虽然本发明在限定上述DNA分子时所用限定语为“含有”,但其并不意味着可以在DNA序列的两端任意加入与其功能不相关的其他序列。本领域技术人员知晓,为了满足重组操作的要求,需要在DNA序列的两端添加合适的限制性内切酶的酶切位点,或者额外增加启动密码子、终止密码子等,因此,如果用封闭式的表述来限定将不能真实地覆盖这些情形。
本发明中所使用的术语“质粒”包括双链或单链线状或环状形式的任何质粒、粘粒、噬菌体或农杆菌二元核酸分子,优选为重组表达质粒,可以是原核表达质粒也可以是真核表达质粒,但优选原核表达质粒,在某些实施方案中,重组质粒选自pET-22a(+)、pET-22b(+)、pET-3a(+)、pET-3d(+)、pET-11a(+)、pET-12a(+)、pET-14b(+)、pET-15b(+)、pET-16b(+)、pET-17b(+)、pET-19b(+)、pET-20b(+)、pET-21a(+)、pET-23a(+)、pET-23b(+)、pET-24a (+)、pET-25b(+)、pET-26b(+)、pET-27b(+)、pET-28a(+)、pET-29a(+)、pET-30a(+)、pET-31b(+)、pET-32a(+)、pET-35b(+)、pET-38b(+)、pET-39b(+)、pET-40b(+)、pET-41a(+)、pET-41b(+)、pET-42a(+)、pET-43a(+)、pET-43b(+)、pET-44a(+)、pET-49b(+)、pQE2、pQE9、pQE30、pQE31、pQE32、pQE40、pQE70、pQE80、pRSET-A、pRSET-B、pRSET-C、pGEX-5X-1、pGEX-6p-1、pGEX-6p-2、pBV220、pBV221、pBV222、pTrc99A、pTwin1、pEZZ18、pKK232-18、pUC-18或pUC-19。更优选,上述重组质粒是pET-22b(+)。
在本申请第四种典型的实施方式中,提供了一种宿主细胞,该宿主细胞含有上述任一种重组质粒。适用于本发明的宿主细胞包括但不仅限于原核细胞、酵母或真核细胞。优选原核细胞为真细菌,例如革兰氏阴性菌或革兰氏阳性菌。更优选原核细胞为大肠杆菌BL21细胞或大肠杆菌DH5α感受态细胞。
在本申请第五种典型的实施方式中,提供一种生产手性胺的方法,该方法包括:采用上述任一种转氨酶突变体催化酮类化合物
Figure PCTCN2020093528-appb-000012
进行转氨反应,生成手性胺化合物
Figure PCTCN2020093528-appb-000013
其中,R 1和R 2分别独立的表示任选取代或未被取代的烷基、任选取代或未被取代的芳烷基、或任选取代或未被取代的芳基,R 1和R 2可单独或两者互相结合形成取代或未被取代的环。
在一种优选的实施例中,R 1和R 2为碳原子数为1-20的任选取代或未被取代的烷基、任选取代或未被取代的芳烷基、或任选取代或未被取代的芳基;优选的,R 1和R 2为碳原子数1-10的任选取代或未被取代的烷基、任选取代或未被取代的芳烷基、或任选取代或未被取代的芳基;优选的,取代是指被卤素原子、氮原子、硫原子、羟基、硝基、氰基、甲氧基、乙氧基、羧基、羧甲基、羧乙基或亚甲二氧基取代。
在一种更优选的实施例中,酮类化合物为为
Figure PCTCN2020093528-appb-000014
或者为苯环上任意位置被取代或未被取代的苯乙酮类化合物,转氨酶突变体催化
Figure PCTCN2020093528-appb-000015
进行转氨反应,生 成产物
Figure PCTCN2020093528-appb-000016
R表示苯环上任意位置被卤素、硝基、甲基或甲氧基取代;优选的,卤素为氟原子;更优选氟原子在苯环的间位取代;优选的,硝基在苯环的邻位取代;
在一种更优选的实施例中,苯乙酮类化合物为
Figure PCTCN2020093528-appb-000017
Figure PCTCN2020093528-appb-000018
本申请的转氨酶突变体对上述两种苯乙酮类化合物的催化活性最高。
下面将结合具体的实施例来进一步说明本申请的有益效果。
下述实施例提到的原料为:
原料1:
Figure PCTCN2020093528-appb-000019
3'-氟苯乙酮3'-Fluoroacetophenone:CasNo:455-36-7。
原料2:
Figure PCTCN2020093528-appb-000020
邻硝基苯乙酮2'-Nitroacetophenone CasNo:577-59-3。
原料3:
Figure PCTCN2020093528-appb-000021
3-乙酰基-4-甲基吡3-Acetyl-4-methylpyridine CasNo:51227-30-6。
原料4:
Figure PCTCN2020093528-appb-000022
2-己酮2-Hexanone CasNo:591-78-6
实施例1
5mL的反应瓶中分别加入30mg原料1、原料2、原料3和原料4,加入pH 8.5的Tris-Cl(0.1M),181μL的异丙胺盐酸盐(6M),0.9mg的PLP,加入转氨酶300mg(具体见表1),混匀,总体积1500μL,于30℃,200rpm摇床反应16h。反应结束后,向反应体系中加2倍体积的甲醇,混匀,12000rpm,离心3min,取上清,HPLC检测,波长210nm。部分突变体反应特性如下:
表1:
Figure PCTCN2020093528-appb-000023
上表中,母本为突变体SEQ ID NO:1;酶对底物转化率的高低用活性来表示,-表示母本的初始活性,活性提高的倍数用+表示,+表示提高1-5倍,++表示提高5-10倍。
由表1的结果可以看出,单点突变体的转化效果较母本有所提高,但并未达到最理想的效果。对有益突变位点进行组合,可进一步提高突变体活性。
实施例2:
5mL的反应瓶中分别加入30mg原料1、原料2、原料3和原料4,加入pH 8.5的Tris-Cl(0.1M),181μL的异丙胺盐酸盐(6M),0.9mg的PLP,加入转氨酶210mg(具体见表2),混匀,总体积1500μL,于30℃,200rpm摇床反应16h。反应结束后,向反应体系中加2倍体积的甲醇,混匀,12000rpm,离心3min,取上清,HPLC检测,波长210nm。部分突变体反应特性如下:
表2:
Figure PCTCN2020093528-appb-000024
上述母本为突变体SEQ ID NO:1;酶对底物转化率的高低用活性来表示,-表示母本的初始活性,活性提高的倍数用+表示,+表示提高1-5倍,++表示提高5-10倍。
由表2结果可以看出,突变体活性进一步提高,但仍未达到最佳的效果。可通过迭代饱和突变的进化方法,叠加活性提高的突变位点,避免进化过程中,进化结果只限于局部最高点而不能到达全局最高点,获得活性提高的突变体。
实施例3
5mL的反应瓶中分别加入30mg原料1、原料2、原料3和原料4,加入pH 8.5的Tris-Cl(0.1M),181μL的异丙胺盐酸盐(6M),0.9mg的PLP,加入转氨酶60mg(具体见表3),混匀,总体积900μL,于30℃,200rpm摇床反应16h。反应结束后,向反应体系中加2倍体积的甲醇,混匀,12000rpm,离心3min,取上清,HPLC检测,波长210nm。部分突变体反应特性如下:
表3:
Figure PCTCN2020093528-appb-000025
上述母本为突变体SEQ ID NO:1;酶对底物转化率的高低用活性来表示,-表示母本的初始活性,活性提高的倍数用+表示,+表示提高1-5倍,++表示提高5-10倍,+++表示提高10-20倍,++++表示提高20-30倍。
实施例4
5mL的反应瓶分别中加入30mg原料1、原料2、原料3和原料4,加入pH 8.5的Tris-Cl(0.1M),181μL的异丙胺盐酸盐(6M),0.9mg的PLP,加入转氨酶60mg(具体见表4),混匀,总体积900μL,于30℃,200rpm摇床反应16h。反应结束后,向反应体系中加2倍体积的甲醇,混匀,12000rpm,离心3min,取上清,HPLC检测,波长210nm。部分突变体反应特性如下:
表4:
Figure PCTCN2020093528-appb-000026
Figure PCTCN2020093528-appb-000027
上述母本为突变体SEQ ID NO:1;酶对底物转化率的高低用活性来表示,-表示母本的初始活性,活性提高的倍数用+表示,+表示提高1-5倍,++表示提高5-10倍,+++表示提高10-20倍,++++表示提高20-30倍,+++++表示提高30-50倍,++++++表示提高大于50倍。
由表4结果可以看出,运用迭代饱和突变使得突变体活性大幅提高。下一步可继续通过随机突变(易错PCR),进一步提高突变体活性,得到可用于工业生产的最终突变体。
实施例5
5mL的反应瓶中分别加入30mg原料1、原料2、原料3和原料4,加入pH 8.5的Tris-Cl(0.1M),181μL的异丙胺盐酸盐(6M),0.9mg的PLP,加入转氨酶30mg(具体见表5),混匀,总体积900μL,于30℃,200rpm摇床反应16h。反应结束后,向反应体系中加2倍体积的甲醇,混匀,12000rpm,离心3min,取上清,HPLC检测,波长210nm。部分突变体反应特性如下:
表5:
Figure PCTCN2020093528-appb-000028
上述母本为突变体SEQ ID NO:1;酶对底物转化率的高低用活性来表示,-表示母本的初始活性,活性提高的倍数用+表示,+表示提高1-5倍,++表示提高5-10倍,+++表示提高10-20倍,++++表示提高20-30倍,+++++表示提高30-50倍,++++++表示提高大于50倍。
实施例6
5mL的反应瓶中分别加入30mg原料1、原料2、原料3和原料4,加入pH 8.5的Tris-Cl(0.1M),181μL的异丙胺盐酸盐(6M),0.9mg的PLP,加入转氨酶30mg(具体见表6),混匀,总体积900μL,于30℃,200rpm摇床反应16h。反应结束后,向反应体系中加入2mL乙酸乙酯,12000rpm,离心3min,进行萃取,取上清,HPLC检测ee值。突变体反应特性如下:
表6:
Figure PCTCN2020093528-appb-000029
实施例7
2L的反应瓶中分别加入20g原料1和原料2,加入pH 8.5的Tris-Cl(0.1M),120mL的异丙胺盐酸盐(6M),0.6g的PLP,加入转氨酶20g(具体见表6),混匀,总体积600mL,于30℃,200rpm摇床反应16h。反应结束后,向反应体系中加入600mL乙酸乙酯,12000rpm,离心3min,进行萃取。样品经过后处理,HPLC检测,测定收率、纯度及ee值。
表7:
Figure PCTCN2020093528-appb-000030
从以上的描述中,可以看出,本发明上述的实施例实现了如下技术效果:本申请通过理性设计和随机突变相结合的方法对已有的还原酶突变体的蛋白进行理性改造,并对获得的突变体使用本申请的底物酮进行催化活力和立体选择性筛选,最终获得了高选择性和高活力的突变体菌株,将含有这些突变体的菌株应用于本申请所述的酮类底物的催化还原反应中,能够提高其相应的手性醇类化合物的生成效率。
以上所述仅为本发明的优选实施例而已,并不用于限制本发明,对于本领域的技术人员来说,本发明可以有各种更改和变化。凡在本发明的精神和原则之内,所作的任何修改、等同替换、改进等,均应包含在本发明的保护范围之内。

Claims (8)

  1. 一种转氨酶突变体,其特征在于,所述转氨酶突变体的氨基酸序列与SEQ ID NO:1所示的氨基酸序列相比,在如下任一个位点发生突变:L166I/V、K149Q/V/C/I/W、K146R/M/A、A168M/V/I、H73T/N/C/Q、F133S/Q/M,“/”表示“或”;或者在如下任一组合位点发生突变:
    Figure PCTCN2020093528-appb-100001
    Figure PCTCN2020093528-appb-100002
    Figure PCTCN2020093528-appb-100003
  2. 一种DNA分子,其特征在于,所述DNA分子编码权利要求1所述的转氨酶突变体。
  3. 一种重组质粒,其特征在于,所述重组质粒连接有权利要求2所述的DNA分子。
  4. 一种宿主细胞,其特征在于,所述宿主细胞含有权利要求3所述的重组质粒。
  5. 根据权利要求4所述的宿主细胞,其特征在于,所述宿主细胞包括原核细胞或真核细胞;所述原核细胞为大肠杆菌。
  6. 一种生产手性胺的方法,其特征在于,所述方法包括:采用权利要求1所述的转氨酶突变体催化酮类化合物进行转氨反应生成产物,
    所述酮类化合物为
    Figure PCTCN2020093528-appb-100004
    或者为苯乙酮类化合物
    Figure PCTCN2020093528-appb-100005
    其中,R表示苯环上任意位置被卤素或硝基取代。
  7. 根据权利要求6所述的方法,其特征在于,
    所述卤素为氟原子。
  8. 根据权利要求6所述的方法,其特征在于,
    所述苯乙酮类化合物为
    Figure PCTCN2020093528-appb-100006
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