WO2021217773A1 - 转氨酶突变体及其应用 - Google Patents
转氨酶突变体及其应用 Download PDFInfo
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- WO2021217773A1 WO2021217773A1 PCT/CN2020/093528 CN2020093528W WO2021217773A1 WO 2021217773 A1 WO2021217773 A1 WO 2021217773A1 CN 2020093528 W CN2020093528 W CN 2020093528W WO 2021217773 A1 WO2021217773 A1 WO 2021217773A1
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- 102000003929 Transaminases Human genes 0.000 title claims abstract description 42
- 108090000340 Transaminases Proteins 0.000 title claims abstract description 42
- 230000035772 mutation Effects 0.000 claims abstract description 36
- 125000003275 alpha amino acid group Chemical group 0.000 claims abstract description 19
- 150000001412 amines Chemical class 0.000 claims abstract description 11
- 238000000034 method Methods 0.000 claims description 27
- -1 ketone compound Chemical class 0.000 claims description 21
- 210000004027 cell Anatomy 0.000 claims description 19
- 108020004414 DNA Proteins 0.000 claims description 18
- 239000013612 plasmid Substances 0.000 claims description 17
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 claims description 9
- 238000005891 transamination reaction Methods 0.000 claims description 9
- 102000053602 DNA Human genes 0.000 claims description 8
- 210000001236 prokaryotic cell Anatomy 0.000 claims description 7
- 229910052736 halogen Inorganic materials 0.000 claims description 6
- KWOLFJPFCHCOCG-UHFFFAOYSA-N Acetophenone Natural products CC(=O)C1=CC=CC=C1 KWOLFJPFCHCOCG-UHFFFAOYSA-N 0.000 claims description 5
- 241000588724 Escherichia coli Species 0.000 claims description 5
- 229910052731 fluorine Inorganic materials 0.000 claims description 5
- 125000001153 fluoro group Chemical group F* 0.000 claims description 5
- 238000004519 manufacturing process Methods 0.000 claims description 5
- 125000000449 nitro group Chemical group [O-][N+](*)=O 0.000 claims description 5
- 150000008062 acetophenones Chemical class 0.000 claims description 4
- 150000002367 halogens Chemical class 0.000 claims description 4
- 210000003527 eukaryotic cell Anatomy 0.000 claims description 3
- 238000006243 chemical reaction Methods 0.000 abstract description 34
- 239000000758 substrate Substances 0.000 abstract description 12
- 150000002576 ketones Chemical class 0.000 abstract description 9
- 230000003197 catalytic effect Effects 0.000 abstract description 8
- 230000001976 improved effect Effects 0.000 abstract description 5
- 238000009776 industrial production Methods 0.000 abstract description 5
- 239000002994 raw material Substances 0.000 description 31
- 230000000694 effects Effects 0.000 description 30
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 15
- 102000004190 Enzymes Human genes 0.000 description 14
- 108090000790 Enzymes Proteins 0.000 description 14
- 238000003752 polymerase chain reaction Methods 0.000 description 14
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- 230000001965 increasing effect Effects 0.000 description 8
- 238000004128 high performance liquid chromatography Methods 0.000 description 7
- 102000039446 nucleic acids Human genes 0.000 description 7
- 108020004707 nucleic acids Proteins 0.000 description 7
- 150000007523 nucleic acids Chemical class 0.000 description 7
- ISYORFGKSZLPNW-UHFFFAOYSA-N propan-2-ylazanium;chloride Chemical compound [Cl-].CC(C)[NH3+] ISYORFGKSZLPNW-UHFFFAOYSA-N 0.000 description 7
- NGVDGCNFYWLIFO-UHFFFAOYSA-N pyridoxal 5'-phosphate Chemical compound CC1=NC=C(COP(O)(O)=O)C(C=O)=C1O NGVDGCNFYWLIFO-UHFFFAOYSA-N 0.000 description 7
- 108010014303 DNA-directed DNA polymerase Proteins 0.000 description 6
- 102000016928 DNA-directed DNA polymerase Human genes 0.000 description 6
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 6
- 125000000217 alkyl group Chemical group 0.000 description 6
- 125000003710 aryl alkyl group Chemical group 0.000 description 6
- 125000003118 aryl group Chemical group 0.000 description 6
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- 230000004044 response Effects 0.000 description 6
- 239000006228 supernatant Substances 0.000 description 6
- RWQNBRDOKXIBIV-UHFFFAOYSA-N thymine Chemical compound CC1=CNC(=O)NC1=O RWQNBRDOKXIBIV-UHFFFAOYSA-N 0.000 description 6
- 238000006467 substitution reaction Methods 0.000 description 5
- 241001156739 Actinobacteria <phylum> Species 0.000 description 4
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- 125000005843 halogen group Chemical group 0.000 description 4
- 125000000956 methoxy group Chemical group [H]C([H])([H])O* 0.000 description 4
- 239000002773 nucleotide Substances 0.000 description 4
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- LCEINQHGZAFADC-UHFFFAOYSA-N 1-(4-methylpyridin-3-yl)ethanone Chemical compound CC(=O)C1=CN=CC=C1C LCEINQHGZAFADC-UHFFFAOYSA-N 0.000 description 3
- 238000007792 addition Methods 0.000 description 3
- 125000000539 amino acid group Chemical group 0.000 description 3
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- 239000003814 drug Substances 0.000 description 3
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- 238000000338 in vitro Methods 0.000 description 3
- 125000004433 nitrogen atom Chemical group N* 0.000 description 3
- 238000005215 recombination Methods 0.000 description 3
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- 238000003786 synthesis reaction Methods 0.000 description 3
- 229940113082 thymine Drugs 0.000 description 3
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 2
- SUGXZLKUDLDTKX-UHFFFAOYSA-N 1-(2-nitrophenyl)ethanone Chemical compound CC(=O)C1=CC=CC=C1[N+]([O-])=O SUGXZLKUDLDTKX-UHFFFAOYSA-N 0.000 description 2
- HCEKGPAHZCYRBZ-UHFFFAOYSA-N 1-(3-fluorophenyl)ethanone Chemical compound CC(=O)C1=CC=CC(F)=C1 HCEKGPAHZCYRBZ-UHFFFAOYSA-N 0.000 description 2
- 229930024421 Adenine Natural products 0.000 description 2
- GFFGJBXGBJISGV-UHFFFAOYSA-N Adenine Chemical compound NC1=NC=NC2=C1N=CN2 GFFGJBXGBJISGV-UHFFFAOYSA-N 0.000 description 2
- QGZKDVFQNNGYKY-UHFFFAOYSA-N Ammonia Chemical compound N QGZKDVFQNNGYKY-UHFFFAOYSA-N 0.000 description 2
- 241000894006 Bacteria Species 0.000 description 2
- 108060002716 Exonuclease Proteins 0.000 description 2
- 102220591179 Receptor-type tyrosine-protein phosphatase kappa_H82S_mutation Human genes 0.000 description 2
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- 150000001413 amino acids Chemical class 0.000 description 2
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 description 2
- 125000002057 carboxymethyl group Chemical group [H]OC(=O)C([H])([H])[*] 0.000 description 2
- 125000004093 cyano group Chemical group *C#N 0.000 description 2
- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical compound NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 description 2
- 238000012217 deletion Methods 0.000 description 2
- 230000037430 deletion Effects 0.000 description 2
- 125000001301 ethoxy group Chemical group [H]C([H])([H])C([H])([H])O* 0.000 description 2
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- 229910052717 sulfur Inorganic materials 0.000 description 2
- 125000004434 sulfur atom Chemical group 0.000 description 2
- 241000589158 Agrobacterium Species 0.000 description 1
- 108020005544 Antisense RNA Proteins 0.000 description 1
- RQEUFEKYXDPUSK-SSDOTTSWSA-N C[C@H](c1ccccc1)N Chemical compound C[C@H](c1ccccc1)N RQEUFEKYXDPUSK-SSDOTTSWSA-N 0.000 description 1
- 108091026890 Coding region Proteins 0.000 description 1
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- 230000004543 DNA replication Effects 0.000 description 1
- 241000672609 Escherichia coli BL21 Species 0.000 description 1
- 241000620209 Escherichia coli DH5[alpha] Species 0.000 description 1
- 241000192125 Firmicutes Species 0.000 description 1
- 229930194542 Keto Natural products 0.000 description 1
- 240000004808 Saccharomyces cerevisiae Species 0.000 description 1
- 108091081024 Start codon Proteins 0.000 description 1
- 108020004417 Untranslated RNA Proteins 0.000 description 1
- 102000039634 Untranslated RNA Human genes 0.000 description 1
- 230000003213 activating effect Effects 0.000 description 1
- 229910021529 ammonia Inorganic materials 0.000 description 1
- AVKUERGKIZMTKX-NJBDSQKTSA-N ampicillin Chemical compound C1([C@@H](N)C(=O)N[C@H]2[C@H]3SC([C@@H](N3C2=O)C(O)=O)(C)C)=CC=CC=C1 AVKUERGKIZMTKX-NJBDSQKTSA-N 0.000 description 1
- 229960000723 ampicillin Drugs 0.000 description 1
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- 230000002924 anti-infective effect Effects 0.000 description 1
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- 239000002220 antihypertensive agent Substances 0.000 description 1
- 229940127088 antihypertensive drug Drugs 0.000 description 1
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 description 1
- 229940125692 cardiovascular agent Drugs 0.000 description 1
- 239000002327 cardiovascular agent Substances 0.000 description 1
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- JBAXWZGBNPCMNR-UHFFFAOYSA-N hexan-2-one Chemical compound CCCCC(C)=O.CCCCC(C)=O JBAXWZGBNPCMNR-UHFFFAOYSA-N 0.000 description 1
- 238000013537 high throughput screening Methods 0.000 description 1
- 125000004435 hydrogen atom Chemical group [H]* 0.000 description 1
- 150000002466 imines Chemical class 0.000 description 1
- 125000001841 imino group Chemical group [H]N=* 0.000 description 1
- 230000006872 improvement Effects 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- 238000006317 isomerization reaction Methods 0.000 description 1
- BPHPUYQFMNQIOC-NXRLNHOXSA-N isopropyl beta-D-thiogalactopyranoside Chemical compound CC(C)S[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O BPHPUYQFMNQIOC-NXRLNHOXSA-N 0.000 description 1
- 125000000468 ketone group Chemical group 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 231100000219 mutagenic Toxicity 0.000 description 1
- 230000003505 mutagenic effect Effects 0.000 description 1
- 238000007857 nested PCR Methods 0.000 description 1
- 230000000926 neurological effect Effects 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 229910052760 oxygen Inorganic materials 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 1
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- 150000003624 transition metals Chemical class 0.000 description 1
- 238000013519 translation Methods 0.000 description 1
- 241001515965 unidentified phage Species 0.000 description 1
- 210000005253 yeast cell Anatomy 0.000 description 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/1096—Transferases (2.) transferring nitrogenous groups (2.6)
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/52—Genes encoding for enzymes or proenzymes
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P13/00—Preparation of nitrogen-containing organic compounds
- C12P13/001—Amines; Imines
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P13/00—Preparation of nitrogen-containing organic compounds
- C12P13/008—Preparation of nitrogen-containing organic compounds containing a N-O bond, e.g. nitro (-NO2), nitroso (-NO)
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/10—Nitrogen as only ring hetero atom
- C12P17/12—Nitrogen as only ring hetero atom containing a six-membered hetero ring
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y206/00—Transferases transferring nitrogenous groups (2.6)
- C12Y206/01—Transaminases (2.6.1)
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/70—Vectors or expression systems specially adapted for E. coli
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
- C12R2001/00—Microorganisms ; Processes using microorganisms
- C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
Definitions
- the invention relates to the field of enzyme production, in particular to a transaminase mutant and its application.
- Chiral amines are the structural units of many important biologically active molecules and are key intermediates for the synthesis of many chiral drugs. Many important neurological drugs, cardiovascular drugs, antihypertensive drugs, anti-infective drugs, etc. are synthesized using chiral amines as intermediates. The preparation of chiral amines is mainly achieved through chemical reduction methods. There are disadvantages such as harsh reaction conditions, the use of toxic transition metal catalysts, and low product stereoselectivity. Currently, the use of biocatalysis to prepare chiral compounds in the pharmaceutical industry is widely used and has broad prospects.
- Omega-transaminase can catalyze ketone substrates and efficiently prepare chiral amines through stereoselective transamination. Because of its high selectivity, high conversion rate and mild reaction conditions, it has received extensive attention from researchers. However, in industrial applications, most of the wild transaminases have shortcomings such as low catalytic efficiency, poor stereoselectivity, and weak stability, so that there are not many transaminase that can really be used.
- the invention patent application with application publication number CN107828751A discloses an ⁇ -transaminase mutant L107I derived from Actinobacteria sp., which can highly selectively catalyze acetophenone compounds to obtain chiral ammonia products.
- the reaction is as follows:
- the initial activity is less than 10%, the activity is low, the amount of enzyme added during the reaction is large, and the post-processing is difficult.
- the main purpose of the present invention is to provide a transaminase mutant and its application to solve the problem that the existing transaminase is not suitable for industrial production.
- a transaminase mutant is provided. Compared with the amino acid sequence shown in SEQ ID NO:1, the amino acid sequence of the transaminase mutant includes at least one mutation site as follows: L166 , K149, K146, A168, H73, F133, H82, E24, V194, T294, A295, G235 and F236.
- amino acid sequence of the aminotransferase mutant includes at least one mutation site as follows: L166I/V, K149Q/V/C/I/W/M/Y/H/L/F/R, K146R/M/A/P , A168M/V/I/S/P/F, H73T/N/C/Q/R/W/M/K/S, F133S/Q/M/R/A/D, H82S ⁇ Q ⁇ E ⁇ T ⁇ Y, E24V/S/A/F, V194I/S/A/H/N, T294Q/W/V/A/E/R/Y/F, A295S/Y/I/M/G, G235Y/H And F236I/T/P/M/V/D/S, Y9N, S132K, R145K/P/S/M/Y, L151R/M/A, T178M, "/" means "or”; or aminotransferase mutants include
- amino acid sequence of the aminotransferase mutant has any combination of mutation sites in the following table:
- a DNA molecule which encodes any of the above-mentioned aminotransferase mutants.
- a recombinant plasmid is provided, which is connected with any of the above-mentioned DNA molecules.
- a host cell which contains any of the above recombinant plasmids.
- the host cell includes a prokaryotic cell or a eukaryotic cell; preferably, the prokaryotic cell is Escherichia coli.
- a method for producing chiral amines includes: using any of the above-mentioned aminotransferase mutants to catalyze ketone compounds Carry out transamination reaction to produce product
- R 1 and R 2 each independently represent an optionally substituted or unsubstituted alkyl group, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted aryl group
- R 1 and R 2 can be singly or combined with each other to form a substituted or unsubstituted ring.
- R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1 to 20 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted aryl group.
- R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1-10 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted Aryl; preferably, substitution refers to a halogen atom, a nitrogen atom, a sulfur atom, a hydroxyl group, a nitro group, a cyano group, a methoxy group, an ethoxy group, a carboxyl group, a carboxymethyl group, a carboxyethyl group or a methylenedioxy group replace.
- the ketone compound is Or the ketone compound is an acetophenone compound substituted or unsubstituted at any position on the benzene ring, catalyzed by the aminotransferase mutant
- Carry out transamination reaction to produce product R represents that any position on the benzene ring is substituted by halogen, nitro, methyl or methoxy; preferably, the halogen is a fluorine atom; more preferably, the fluorine atom is substituted at the meta position of the benzene ring; preferably, the nitro group is substituted on the benzene ring Ortho substitution; preferably, acetophenone compounds are
- the mutant of the present invention has improved catalytic activity for transamination of ketone substrates, and is suitable for the industrial production of chiral amines.
- Naturally occurring or wild type is the opposite of “mutant” and refers to the form found in nature.
- a naturally-occurring or wild-type polypeptide or polynucleotide sequence is a sequence that exists in an organism, it can be isolated from a source in nature, and has not been intentionally modified or changed by man.
- the "recombination" of cells, nucleic acids, or polypeptides when referring to, for example, the "recombination" of cells, nucleic acids, or polypeptides, it means that they have been modified in a way that does not exist in nature, or are in the same form as they exist in nature, but are made of synthetic materials and/or through the use of recombinant materials. It is prepared or derived by technological processing, or corresponds to a cell, nucleic acid or polypeptide in a natural or inherent form. Among them, non-limiting examples include recombinant cells expressing genes other than the inherent (non-recombinant) form in cells or expressing inherent genes at different levels.
- Percentage of sequence identity refers to the comparison between polynucleotide sequences or amino acid sequences, and is determined by comparing two optimally aligned sequences across a comparison window, where the polynucleotide sequence or amino acid sequence is in the comparison window. Compared with the reference sequence, the part in may include additions or deletions (ie, gaps) for the best alignment of the two sequences. The percentage can be calculated as follows: by determining the number of positions where the same nucleic acid base or amino acid residue appears in the two sequences to generate the number of matching positions, dividing the number of matching positions by the total number of positions in the comparison window, and The result is multiplied by 100 to get the percentage of sequence identity.
- the percentage can be calculated as follows: by determining the number of positions where the same nucleic acid base or amino acid residue or the nucleic acid base or amino acid residue is aligned with the gap in the two sequences to generate the number of matching positions, the match Divide the number of positions by the total number of positions in the comparison window and multiply the result by 100 to get the percentage of sequence identity.
- reference sequence refers to a designated sequence used as a basis for sequence comparison. The reference sequence may be a subset of a larger sequence, for example, a segment of a full-length gene or polypeptide sequence.
- Site-directed mutagenesis refers to the introduction of desired changes (usually to characterize changes in a favorable direction) into the target DNA fragment (either genome or plasmid) by polymerase chain reaction (PCR) and other methods, including the addition of bases , Deletion, point mutation, etc. Site-directed mutagenesis can quickly and efficiently improve the traits and characterization of the target protein expressed by DNA, which is a very useful method in gene research.
- the directed evolution of enzymes is a kind of irrational design of proteins, artificially creating special evolutionary conditions, simulating natural evolutionary mechanisms, modifying genes in vitro, applying error-prone PCR, DNA shuffling and other technologies, combined with efficient screening systems to obtain New enzymes with expected properties.
- this application uses the method of enzyme evolution to analyze the ⁇ -transaminase mutant L107I (SEQ ID NO:1) derived from Actinobacteria sp. ) To evolve.
- the sequence of the ⁇ -transaminase mutant L107I (SEQ ID NO:1) derived from Actinobacteria sp. is as follows:
- Saturation mutation is a method to obtain mutants in which the target amino acids are replaced by 19 other amino acids in a short time by modifying the coding gene of the target protein. This method is not only a powerful tool for directed modification of proteins, but also an important method for the study of protein structure-function relationships. Saturation mutations can often obtain more ideal evolutionary bodies than single point mutations. For these problems that the site-directed mutation method cannot solve, it is precisely the unique point that the saturation mutation method is good at.
- mutants with increased activity obtained by saturation mutations beneficial amino acid positions can be combined to obtain mutants with better traits.
- the method for constructing double-point mutations in combinatorial mutations is the same as that for single-point mutations, using the whole plasmid PCR method. Simultaneously mutate two or more sites of multiple-point mutations by using overlap extension PCR amplification to obtain a mutated gene containing multiple-point mutations. After the two ends are digested with restriction enzymes, they are ligated to the expression vector and transformed into The Escherichia coli cells were spread on an LB culture dish containing 100 ⁇ g/mL ampicillin and cultured overnight at 37° C. to obtain combined mutants, which were identified by sequencing.
- the mutant plasmid obtained by saturation mutation and combined mutation is transformed into E. coli cells and expressed in E. coli. Then, the crude enzyme solution is obtained by sonicating the cells. The best conditions for inducing expression of transaminase: 25°C, 0.2mM IPTG overnight induction.
- transaminase mutants After obtaining transaminase mutants with greatly increased activity, they are randomly mutated using error-prone PCR methods to construct a high-quality mutant library, develop appropriate high-throughput screening methods, screen the library, and obtain mutations with further increased activity body.
- Error-prone PCR means PCR under error-prone conditions, that is, a PCR technique that easily causes errors in the copied DNA sequence, also known as mismatch PCR or error-prone PCR. Specifically, it refers to the use of low-fidelity TaqDNA polymerase and changing PCR reaction conditions to reduce the fidelity of DNA replication, increase base mismatches during the synthesis of new DNA strands, and cause more point mutations in the amplified products. A method of inducing DNA sequence variation in vitro.
- Error-prone PCR is currently the simplest and most effective in vitro random mutagenesis technique for genes. Its principle is: the isomerization of bases provides the possibility of mismatches.
- the four bases that make up DNA all have tautomers.
- the three oxygen-containing bases of guanine (G), cytosine (C) and thymine (T) have two tautomers: keto and enol.
- Adenine (A) and thymine are two nitrogenous bases, and there are amine and imine tautomers.
- G, C and T mainly exist as ketone structure, and the ratio of enol structure is extremely low.
- the nitrogen atoms on the two nitrogen-containing bases of A and T mainly exist in the state of amino (NH2), and in the state of imino (NH).
- the rate of state existence is extremely low.
- the difference in the position of the hydrogen atom between different isomers and the deviation of the electron cloud at the same position can change the pairing form of the bases, so that mismatches may appear on the copied daughter strands. For example, when thymine exists in a ketone structure, it pairs with adenine, and when it exists in an enol structure, it pairs with guanine. In this way, there are unstable bases where A can be matched with C and T can be matched with G. Yes, resulting in mismatches.
- TaqDNA polymerase has the highest mismatch rate.
- Taq DNA polymerase is the most active one among the heat-resistant DNA polymerases found. It has 5'-3' exonuclease activity, but not 3'-5' exonuclease activity. Therefore, it has a strong effect on certain mononuclear DNA polymerases during synthesis. There is no correction function for nucleotide mismatches, so the probability of mismatches is higher than that of DNA polymerases with 3'-5' proofreading activity.
- the fidelity of DNA polymerase can be reduced by a variety of methods, including the use of 4 different concentrations of dNTP, the addition of Mn 2+ , and the increase of Mg 2+ concentration.
- MnC1 2 is a mutagenic factor of DNA polymerase. Adding Mn 2+ can reduce the specificity of the polymerase to the template and increase the mismatch rate; the unbalanced concentration of 4 dNTPs can increase the probability of base misincorporation and achieve mismatches.
- Mg 2+ has the effect of activating Taq enzyme, increasing the concentration of Mg 2+ to exceed the normal dosage, which can stabilize non-complementary base pairs; increasing the dosage of Taq DNA polymerase and increasing the elongation time of each cycle can increase mismatches Probability of terminal extension; reducing the initial template concentration will increase the proportion of variant templates in subsequent PCR cycles.
- a transaminase mutant is provided.
- the amino acid sequence of the transaminase mutant includes at least one mutation site as follows: L166 , K149, K146, A168, H73, F133, H82, E24, V194, T294, A295, G235 and F236.
- the mutant of the present invention has improved catalytic activity for transamination of ketone substrates, and is suitable for the industrial production of chiral amines.
- the amino acid sequence of the aminotransferase mutant further includes one of the following mutation sites: L166I/V, K149Q/V/C/I/W/M/Y/H/L/F/R, K146R/M/A/P, A168M/V/I/S/P/F, H73T/N/C/Q/R/W/M/K/S, F133S/Q/M/R/A/D, H82S ⁇ Q ⁇ E ⁇ T ⁇ Y, E24V/S/A/F, V194I/S/A/H/N, T294Q/W/V/A/E/R/Y/F, A295S/Y/I/ M/G, G235Y/H and F236I/T/P/M/V/D/S, Y9N, S132K, R145K/P/S/M/Y, L151R/M/A, T178M, "/" means "or "; or the transaminase
- amino acid sequence of the aminotransferase mutant has any combination of mutation sites in the foregoing table.
- a DNA molecule which encodes any of the aforementioned aminotransferase mutants.
- the transaminase mutant encoded by the DNA molecule has good transamination catalytic activity on ketone substrates.
- DNA molecules of the present invention may also exist in the form of "expression cassettes".
- "Expression cassette” refers to a linear or circular nucleic acid molecule, covering DNA and RNA sequences that can direct the expression of a specific nucleotide sequence in an appropriate host cell. Generally speaking, it includes a promoter operatively linked to the target nucleotide, which is optionally operatively linked to a termination signal and/or other regulatory elements.
- the expression cassette may also include sequences required for proper translation of the nucleotide sequence.
- the coding region usually encodes the target protein, but also encodes the target functional RNA in the sense or antisense direction, such as antisense RNA or untranslated RNA.
- the expression cassette containing the target polynucleotide sequence may be chimeric, meaning that at least one of its components is heterologous to at least one of the other components.
- the expression cassette may also be naturally occurring, but obtained by efficient recombination for heterologous expression.
- a recombinant plasmid which contains any of the aforementioned DNA molecules.
- the DNA molecule in the recombinant plasmid is placed in an appropriate position of the recombinant plasmid, so that the DNA molecule can replicate, transcribe or express correctly and smoothly.
- plasmid used in the present invention includes any plasmid, cosmid, bacteriophage or Agrobacterium binary nucleic acid molecule in double-stranded or single-stranded linear or circular form, preferably a recombinant expression plasmid, which may be a prokaryotic expression plasmid or It can be a eukaryotic expression plasmid, but preferably a prokaryotic expression plasmid.
- the recombinant plasmid is selected from pET-22a(+), pET-22b(+), pET-3a(+), pET-3d(+) ), pET-11a(+), pET-12a(+), pET-14b(+), pET-15b(+), pET-16b(+), pET-17b(+), pET-19b(+) , PET-20b(+), pET-21a(+), pET-23a(+), pET-23b(+), pET-24a (+), pET-25b(+), pET-26b(+), pET-27b(+), pET-28a(+), pET-29a(+), pET-30a(+), pET-31b(+), pET-32a(+), pET-35b(+), pET -38b(+), pET-39b(+), pET-40b(+),
- a host cell in a fourth exemplary embodiment of the present application, contains any of the aforementioned recombinant plasmids.
- Suitable host cells for the present invention include but are not limited to prokaryotic cells, yeast or eukaryotic cells.
- the prokaryotic cells are eubacteria, such as gram-negative bacteria or gram-positive bacteria. More preferably, the prokaryotic cells are E. coli BL21 cells or E. coli DH5 ⁇ competent cells.
- a method for producing chiral amines comprising: using any of the above-mentioned aminotransferase mutants to catalyze ketone compounds Carry out transamination reaction to generate chiral amine compounds
- R 1 and R 2 each independently represent an optionally substituted or unsubstituted alkyl group, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted or unsubstituted aryl group
- R 1 and R 2 can be singly or combined with each other to form a substituted or unsubstituted ring.
- R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1 to 20 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optionally substituted group.
- R 1 and R 2 are an optionally substituted or unsubstituted alkyl group having 1-10 carbon atoms, an optionally substituted or unsubstituted aralkyl group, or an optional A substituted or unsubstituted aryl group; preferably, substitution refers to a halogen atom, a nitrogen atom, a sulfur atom, a hydroxyl group, a nitro group, a cyano group, a methoxy group, an ethoxy group, a carboxyl group, a carboxymethyl group, a carboxyethyl group Or methylenedioxy substitution.
- the ketone compound is Or it is a substituted or unsubstituted acetophenone compound at any position on the benzene ring, catalyzed by aminotransferase mutants
- Carry out transamination reaction to produce product R represents that any position on the benzene ring is substituted by halogen, nitro, methyl or methoxy; preferably, the halogen is a fluorine atom; more preferably, the fluorine atom is substituted at the meta position of the benzene ring; preferably, the nitro group is substituted on the benzene ring Ortho substitution
- the acetophenone compound is The transaminase mutant of the present application has the highest catalytic activity for the above two acetophenone compounds.
- the mother parent is the mutant SEQ ID NO:1; the conversion rate of the enzyme to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 Times, ++ means an increase of 5-10 times.
- the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times.
- the iterative saturated mutation evolution method can be used to superimpose the mutation sites with increased activity to avoid the evolutionary result being limited to the local highest point instead of reaching the global highest point during the evolution process, and to obtain mutants with increased activity.
- the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times, +++ means an increase of 10-20 times, and ++++ means an increase of 20-30 times.
- the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times, +++ means an increase of 10-20 times, ++++ means an increase of 20-30 times, +++++ means an increase of 30-50 times, ++++++ means an increase of greater than 50 times.
- the above-mentioned mother parent is the mutant SEQ ID NO:1; the level of enzyme conversion rate to the substrate is represented by activity,-represents the initial activity of the mother parent, the multiple of activity increase is represented by +, and + represents an increase of 1-5 times, + + Means an increase of 5-10 times, +++ means an increase of 10-20 times, ++++ means an increase of 20-30 times, +++++ means an increase of 30-50 times, ++++++ means an increase of greater than 50 times.
- this application uses a method of combining rational design and random mutation to rationally modify the protein of the existing reductase mutant, and The obtained mutants were screened for catalytic activity and stereoselectivity using the substrate ketones of the present application, and finally a mutant strain with high selectivity and high activity was obtained, and the strains containing these mutants were applied to the ketones described in the present application.
- the production efficiency of the corresponding chiral alcohol compound can be improved.
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Abstract
Description
Claims (8)
- 一种DNA分子,其特征在于,所述DNA分子编码权利要求1所述的转氨酶突变体。
- 一种重组质粒,其特征在于,所述重组质粒连接有权利要求2所述的DNA分子。
- 一种宿主细胞,其特征在于,所述宿主细胞含有权利要求3所述的重组质粒。
- 根据权利要求4所述的宿主细胞,其特征在于,所述宿主细胞包括原核细胞或真核细胞;所述原核细胞为大肠杆菌。
- 根据权利要求6所述的方法,其特征在于,所述卤素为氟原子。
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US17/997,419 US20230235300A1 (en) | 2020-04-29 | 2020-05-29 | Transaminase Mutant And Use Thereof |
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CN112481230B (zh) * | 2020-12-04 | 2021-12-07 | 浙江科技学院 | 一种通过DNA合成改组组合突变获得的ω-转氨酶突变体及应用 |
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TANG XIAO-LING; ZHANG NAN-NAN; YE GUO-YAN; ZHENG YU-GUO: "Efficient biosynthesis of (R)-3-amino-1-butanol by a novel (R)-selective transaminase fromActinobacteriasp.", JOURNAL OF BIOTECHNOLOGY, ELSEVIER, AMSTERDAM NL, vol. 295, 1 January 1900 (1900-01-01), Amsterdam NL , pages 49 - 54, XP085641894, ISSN: 0168-1656, DOI: 10.1016/j.jbiotec.2019.02.008 * |
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