Classifications

• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
  • C07D401/02—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
  • C07D401/04—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring-member bond
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K31/00—Medicinal preparations containing organic active ingredients
  • A61K31/33—Heterocyclic compounds
  • A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
  • A61K31/535—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one oxygen as the ring hetero atoms, e.g. 1,2-oxazines
  • A61K31/5375—1,4-Oxazines, e.g. morpholine
  • A61K31/5377—1,4-Oxazines, e.g. morpholine not condensed and containing further heterocyclic rings, e.g. timolol
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K45/00—Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
  • A61K45/06—Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P35/00—Antineoplastic agents
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P35/00—Antineoplastic agents
  • A61P35/02—Antineoplastic agents specific for leukemia
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D211/00—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings
  • C07D211/04—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
  • C07D211/68—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having one double bond between ring members or between a ring member and a non-ring member
  • C07D211/70—Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having one double bond between ring members or between a ring member and a non-ring member with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
  • C07D417/02—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
  • C07D417/12—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
  • C07D417/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings

Definitions

• the B-cell lymphoma 2 (Bcl-2) protein family consisting of pro- and anti- apoptotic members, plays a critical role in determining cell fate through regulation of the intrinsic apoptosis pathway.
• the anti-apoptotic Bcl-2 family proteins such as Bcl-2, Bcl- xL, Bcl-w, and Mcl-1, are upregulated in many cancers and associated with tumor initiation, progression, and resistance to chemo- and targeted therapies.
• ABT-737 (US20070072860), navitoclax (ABT-263, W02009155386), venetoclax (ABT-199, W02010138588), obatoclax (GX 15-070, W02004106328), (-)-gossypol (AT-101, W02002097053), sabutoclax (BI-97C1, W02010120943), TW-37 (W02006023778), BM-1252 (APG- 1252), and A-l 155463 (VV02010080503).
• Venetoclax a selective Bcl-2 inhibitor, was approved by the FDA in 2016 for the treatment of chronic lymphocytic leukemia (CLL) with 17-p deletion. Venetoclax was designed to have high selectivity for Bcl-2 over BcI-xL to avoid the on-target platelet toxicity (Souers et ah, Nat Med 19: 202-208, 2013).
• Platelets depend on Bcl-xL to maintain their viability, therefore dose-limiting thrombocytopenia has been observed in animals and/or humans treated with ABT-737 (Schoenwaelder et al., Blood 118: 1663- 1674, 2011), ABT-263 (Tse et al., Cancer Res 68: 3421-3428, 2008; Roberts et al., Bri J Haematol 170: 669-678, 2015), BM-1197 (Bai et al., PLoS ONE 9:e99404, 2014), or A- 1155463 (Tao et al., ACS Med Chem Lett 5:1088-1093,2014), due to their inhibition of Bcl-xL.
• the invention is directed towards compounds (e.g. , Formula (I)), their mechanism of action, and methods of modulating proliferation activity, and methods of treating diseases and disorders using the compounds described herein (e.g., Formula (I)).
• the disease or disorder is cancer.
• the cancer is a Bcl-2- mediated cancer.
• the cancer is chronic lymphocyctic leukemia.
• the invention is directed to a compound of Formula (I), or a pharmaceutically acceptable salt thereof:
• R is independently ⁇ MTy ⁇ — °' ⁇ 'o'K— 0 — ⁇
• each R 2 is independently H, optionally substituted alkyl, or optionally substituted cycloalkyl;
• each R 3 is independently H, D, CFF, or F;
• each n, 0, p, and q is independently 0-10, inclusive.
• the invention is a compound of Formula (I), or a
• the invention is a compound of Formula (I), or a pharmaceutically
• the invention is directed to a compound of Formula (I), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof:
• each R 2 is independently H, optionally substituted alkyl, or optionally substituted cycloalkyl;
• each R 3 is independently H, D, CH 3 , or F;
• each n, 0, p, and q is independently 0-10, inclusive.
• n is 3-8, inclusive.
• R is ; and n is 3-8, inclusive.
• L 2 is independently
• L 2 is independently
• L2 is independently
• Li is independently
• Li is independently
• L2 is independently
• L2 is independently independently independently
• L2 is independently independently ,
• Li is independently
• n orr independently n orr ; ⁇ annrdl R R is ⁇ ' n c 5 ⁇
• n 3-8, inclusive.
• the compound of Formula (I) is:
• the compound of Formula (I) is:
• the invention provides a compound of Table 3, or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof.
• the invention provides a pharmaceutical composition
• a pharmaceutical composition comprising a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof, and a pharmaceutically acceptable carrier.
• the pharmaceutical composition of claim 34 further comprising an additional agent.
• the additional agent is an anti-cancer agent.
• the anti-cancer agent is an alkylating agent, an anti-metabolite, an anti tumor antibiotic, an anti-cytoskeletal agent, a topoisomerase inhibitor, an anti-hormonal agent, a targeted therapeutic agent, a photodynamic therapeutic agent, or a combination thereof.
• the invention provides a method of degrading Bcl-2 proteins, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof.
• a compound described herein e.g., Formula (I)
• the compound is administered in vitro.
• the compound is administered in vivo.
• the method further comprises administering the compound to a subject.
• the invention provides a method of treating a disease or disorder in a subject in need thereof, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof.
• a compound described herein e.g., Formula (I)
• the disease is cancer.
• the cancer is a solid tumor.
• the cancer is chronic lymphocyctic leukemia.
• the subject is a mammal.
• the subject is a human.
• the invention provides a method of treating a subject suffering from or susceptible to a disease or disorder, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a
• the disease is cancer.
• the cancer is a solid tumor.
• the cancer is chronic lymphocyctic leukemia.
• the subject is a mammal.
• the subject is a human.
• the invention provides a method of treating a Bcl-2-mediated cancer in a subject in need thereof, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof, wherein the platelet toxicity of the compound is less than other Bcl-2 inhibitors.
• a compound described herein e.g., Formula (I)
• a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof wherein the platelet toxicity of the compound is less than other Bcl-2 inhibitors.
• the Bcl-2-mediated cancer is chronic lymphocyctic leukemia.
• the other Bcl-2 inhibitor is ABT-737, navitoclax (ABT-263), venetoclax (ABT-199), obatoclax (GX 15-070), (-)- gossypol (AT-101), sabutoclax (BI-97C1), TW-37, BM-1252 (APG-1252), or A-1155463.
• the other Bcl-2 inhibitor is venetoclax or ABT-263.
• the invention provides a method of treating a subject suffering from or susceptible to a Bcl-2-mediated cancer, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a
• the Bcl-2-mediated cancer is chronic lymphocyctic leukemia.
• the other Bcl-2 inhibitor is ABT-737, navitoclax (ABT-263), venetoclax (ABT-199), obatoclax (GX 15-070), (-)-gossypol (AT-101), sabutoclax (BI-97C1), TW-37, BM-1252 (APG-1252), or A-1155463.
• the other Bcl-2 inhibitor is venetoclax or ABT-263.
• the invention provides a method of treating a Bcl-2-mediated cancer in a subject in need thereof, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof, such that ratio of human platelet toxicity (IC50) to anticancer activity (IC50) of the compound is greater than one.
• a compound described herein e.g., Formula (I)
• IC50 human platelet toxicity
• IC50 anticancer activity
• the ratio is greater than 2.5.
• the ratio is greater than 5.
• the ratio is greater than 10.
• the ratio is greater than 20.
• the ratio is greater than 40.
• the invention provides a method of treating a subject suffering from or susceptible to a Bcl-2-mediated cancer, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a
• the Bcl-2-mediated cancer is chronic lymphocyctic leukemia.
• the anticancer activity is measured in MOLT-4 cells.
• the ratio is greater than 2.5.
• the ratio is greater than 5.
• the ratio is greater than 10.
• the ratio is greater than 20.
• the ratio is greater than 40.
• Compounds of the present invention are bivalent compounds that are able to promote the degradation of the anti-apoptotic Bcl-2 family of proteins. These bivalent compounds connect a Bcl-2 small molecule inhibitor or ligand to an E3 ligase binding moiety, such as von Hippel— Landau (VHL) E3 ligase binding moiety (such as HIF- la- derived (R)-hydroxyproline containing VHL E3 ligase ligands) or cereblon (CRBN) E3 ligase binding moiety (thalidomide derivatives such as pomalidomide).
• VHL von Hippel— Landau
• E3 ligase binding moiety such as HIF- la- derived (R)-hydroxyproline containing VHL E3 ligase ligands
• CRBN cereblon
• VHL is part of the cullin-2 (CUL2) containing E3 ubiquitin ligase complex elongin BC-CUL2-VHL (known as CRL2VHL) responsible for degradation of the transcription factor HIF- la.
• CRL2VHL E3 ubiquitin ligase complex elongin BC-CUL2-VHL
• (R)- Hydroxyproline containing VHL E3 ligase ligands derived from HIF- la have been identified with high affinity.
• CRBN is part of the cullin-4 (CUL4) containing E3 ubiquitin ligase complex CUL4-RBX1-DDB1-CRBN (known as CRL4CRBN).
• Thalidomide and its derivatives, such as lenalidomide and pomalidomide interact specifically with this CRBN complex and induce degradation of essential IKAROS transcription factors.
• CC- 122 a non-phthalimide analogue of thalidomide, also interacts with CRBN E3 ligase complex but induces the degradation of lymphoid transcription factor Aiolos.
• the bivalent compounds can actively recruit anti-apoptotic Bcl-2 family of proteins to an E3 ubiquitin ligase, such as CRBN or VHL E3 ligase, resulting in their degradation by ubiquitin proteasome system.
• Platelets depend on BcI-xL protein for survival.
• inhibition of BcI-xL protein in platelets causes thrombocytopenia which limits the use of Bcl-xL inhibitors as cancer therapeutic agents.
• strategies devised to minimize the on-target platelet toxicity associated with the inhibition of BcI-xL could boost the therapeutic applications of drugs like ABT-263, a dual Bcl-2/Bcl-xL inhibitor, in cancer.
• the compounds in the present invention were designed to recruit an E3 ligase, such as CRBN or VHL E3 ligase, that is minimally expressed in platelets for the targeted degradation of BcI-xL.
• the compounds described herein e.g ., Formula (I) have reduced platelet toxicity compared with their corresponding Bcl-2/Bcl-xL inhibitors. Accordingly, the present disclosure provides compositions and methods for selectively degrading anti- apoptotic Bcl-2 family of proteins.
• FIG. 1. depicts the Western blotting analysis of Bcl-xL and apoptotic proteins 16h after treatment with Compound 53 in MOLT-4 cells.
• FIG. 2. depicts dose response curves of ABT-263 and Compound 53 in MOLT-4 T-ALL cells & human platelets determined by MTS assay.
• FIG. 3. depicts the densitometric analysis of BCL-X L degradation by Compound 53.
• FIG. 4. depicts the ability of various compounds to form a temanry complex with the VHL complex and BCL-X L .
• FIG. 5. depicts the inability of the non-PROTAC compound shown to induce BCL-X L degradation in Molt4 T-ALL cells.
• FIG. 6. depicts the dose-dependent degradation of BCL-X L in Molt4 T-ALL cells by Compound 26.
• FIG. 7 depicts the inhibitory effects of degrader #5, degrader #41 and degrader #42 (the chiral pure diastereomers of degrader #5), and ABT-263 on MOLT-4, RS4;11, NCI-H146 cells, and human platelets.
• FIG. 8. shows degraders #5, #41, and #42 dose-dependently induced the degradation of Bcl-xL in MOLT-4 cells with DC50 (concentration with 50% degradation) values of 21.5 nM, 100.5 nM, and 11.5 nM, respectively.
• FIG. 9. shows degrader #5 did not affect Bcl-xL levels in human platelets.
• FIG. 10 shows degraders #5 and #83 induced cleavage of caspase-3 and PARP in MOLT-4 cells after 16 h treatment.
• FIG. 11 shows degraders #83, #84, and #85 formed ternary complexes with the VHL E3 ligase complex and Bcl-xL while their Bcl-xL binding portion (Bcl-xL ligand) did not.
• treating encompasses ameliorating, mitigating and/or managing the disorder and/or conditions that may cause the disorder.
• the terms “treating” and “treatment” refer to a method of alleviating or abating a disease and/or its attendant symptoms.
• “treating” includes blocking, inhibiting, attenuating, modulating, reversing the effects of and reducing the occurrence of e.g., the harmful effects of a disorder.
• inhibiting encompasses reducing and halting progression.
• modulate refers to increases or decreases in the activity of a cell in response to exposure to a compound of the invention.
• isolated refers to material that is substantially or essentially free from components that normally accompany it as found in its native state. Purity and homogeneity are typically determined using analytical chemistry techniques such as polyacrylamide gel electrophoresis or high performance liquid chromatography. Particularly, in embodiments the compound is at least 85% pure, more preferably at least 90% pure, more preferably at least 95% pure, and most preferably at least 99% pure.
• polypeptide peptide
• protein protein
• a “peptide” is a sequence of at least two amino acids. Peptides can consist of short as well as long amino acid sequences, including proteins.
• amino acid refers to naturally occurring and synthetic amino acids, as well as amino acid analogs and amino acid mimetics that function in a manner similar to the naturally occurring amino acids. Naturally occurring amino acids are those encoded by the genetic code, as well as those amino acids that are later modified, e.g.,
• Amino acid analogs refers to compounds that have the same basic chemical structure as a naturally occurring amino acid, i.e., an a carbon that is bound to a hydrogen, a carboxyl group, an amino group, and an R group, e.g., homoserine, norleucine, methionine sulfoxide, methionine methyl sulfonium. Such analogs have modified R groups (e.g., norleucine) or modified peptide backbones, but retain the same basic chemical structure as a naturally occurring amino acid.
• Amino acid mimetics refers to chemical compounds that have a structure that is different from the general chemical structure of an amino acid, but that functions in a manner similar to a naturally occurring amino acid.
• protein refers to series of amino acid residues connected one to the other by peptide bonds between the alpha-amino and carboxy groups of adjacent residues.
• amino acid sequences As to amino acid sequences, one of skill will recognize that individual substitutions, deletions or additions to a peptide, polypeptide, or protein sequence which alters, adds or deletes a single amino acid or a small percentage of amino acids in the encoded sequence is a "conservatively modified variant" where the alteration results in the substitution of an amino acid with a chemically similar amino acid. Conservative substitution tables providing functionally similar amino acids are well known in the art.
• Macromolecular structures such as polypeptide structures can be described in terms of various levels of organization. For a general discussion of this organization, see, e.g., Alberts et ah, Molecular Biology of the Cell (3rd ed., 1994) and Cantor and
• Primary structure refers to the amino acid sequence of a particular peptide.
• Secondary structure refers to locally ordered, three dimensional structures within a polypeptide. These structures are commonly known as domains.
• Domains are portions of a polypeptide that form a compact unit of the polypeptide and are typically 50 to 350 amino acids long. Typical domains are made up of sections of lesser organization such as stretches of b-sheet and oc-helices.
• “Tertiary structure” refers to the complete three dimensional structure of a polypeptide monomer.
• Quaternary structure refers to the three dimensional structure formed by the noncovalent association of independent tertiary units. Anisotropic terms are also known as energy terms.
• administration includes routes of introducing the compound(s) to a subject to perform their intended function.
• routes of administration include injection (subcutaneous, intravenous, parenterally, intraperitoneally, intrathecal), topical, oral, inhalation, rectal and
• an effective amount includes an amount effective, at dosages and for periods of time necessary, to achieve the desired result.
• An effective amount of compound may vary according to factors such as the disease state, age, and weight of the subject, and the ability of the compound to elicit a desired response in the subject.
• Dosage regimens may be adjusted to provide the optimum therapeutic response.
• An effective amount is also one in which any toxic or detrimental effects (e.g., side effects) of the elastase inhibitor compound are outweighed by the therapeutically beneficial effects.
• systemic administration means the administration of a compound(s), drug or other material, such that it enters the patient's system and, thus, is subject to metabolism and other like processes.
• terapéuticaally effective amount refers to that amount of the compound being administered sufficient to prevent development of or alleviate to some extent one or more of the symptoms of the condition or disorder being treated.
• a therapeutically effective amount of compound may range from about 0.005 Eg/kg to about 200 mg/kg, preferably about 0.1 mg/kg to about 200 mg/kg, more preferably about 10 mg/kg to about 100 mg/kg of body weight. In other embodiments, the therapeutically effect amount may range from about 1.0 pM to about 500nM.
• treatment of a subject with a therapeutically effective amount of a compound can include a single treatment or, preferably, can include a series of treatments.
• a subject is treated with a compound in the range of between about 0.005 mg/kg to about 200 mg/kg of body weight, one time per week for between about 1 to 10 weeks, preferably between 2 to 8 weeks, more preferably between about 3 to 7 weeks, and even more preferably for about 4, 5, or 6 weeks. It will also be appreciated that the effective dosage of a compound used for treatment may increase or decrease over the course of a particular treatment.
• chiral refers to molecules which have the property of non-superimposability of the mirror image partner, while the term “achiral” refers to molecules which are superimposable on their mirror image partner.
• diastereomers refers to stereoisomers with two or more centers of dissymmetry and whose molecules are not mirror images of one another.
• enantiomers refers to two stereoisomers of a compound which are non-superimposable mirror images of one another.
• An equimolar mixture of two enantiomers is called a “racemic mixture” or a “racemate.”
• isomers or “stereoisomers” refers to compounds which have identical chemical constitution, but differ with regard to the arrangement of the atoms or groups in space.
• prodrug includes compounds with moieties which can be metabolized in vivo.
• the prodrugs are metabolized in vivo by esterases or by other mechanisms to active drugs.
• Examples of prodrugs and their uses are well known in the art (See, e.g., Berge et al. (1977) "Pharmaceutical Salts", J. Pharm. Sci. 66:1-19).
• the prodrugs can be prepared in situ during the final isolation and purification of the compounds, or by separately reacting the purified compound in its free acid form or hydroxyl with a suitable esterifying agent. Hydroxyl groups can be converted into esters via treatment with a carboxylic acid.
• prodrug moieties include substituted and unsubstituted, branch or unbranched lower alkyl ester moieties, (e.g., propionoic acid esters), lower alkenyl esters, di-lower alkyl-amino lower-alkyl esters ( e.g ., dimethylaminoethyl ester), acylamino lower alkyl esters (e.g., acetyloxymethyl ester), acyloxy lower alkyl esters (e.g., pivaloyloxymethyl ester), aryl esters (phenyl ester), aryl- lower alkyl esters (e.g., benzyl ester), substituted (e.g., with methyl, halo, or methoxy substituents) aryl and aryl-lower alkyl esters, amides, lower-alkyl amides, di-lower alkyl amides, and hydroxy amides.
• subject refers to animals such as mammals, including, but not limited to, primates (e.g., humans), cows, sheep, goats, horses, dogs, cats, rabbits, rats, mice and the like. In certain embodiments, the subject is a human.
• the compounds of the invention include olefins having either geometry:“Z” refers to what is referred to as a“cis” (same side) conformation whereas “E” refers to what is referred to as a“trans” (opposite side) conformation.
• a“cis” sesame side
• E refers to what is referred to as a“trans” (opposite side) conformation.
• d diastereomer, racemate, epimer and enantiomer, these will be used in their normal context to describe the stereochemistry of preparations.
• alkyl refers to a straight-chained or branched hydrocarbon group containing 1 to 12 carbon atoms.
• the term“lower alkyl” refers to a C1-C6 alkyl chain. Examples of alkyl groups include methyl, ethyl, n-propyl, isopropyl, tert- butyl, and n-pentyl. Alkyl groups may be optionally substituted with one or more substituents.
• alkenyl refers to an unsaturated hydrocarbon chain that may be a straight chain or branched chain, containing 2 to 12 carbon atoms and at least one carbon- carbon double bond. Alkenyl groups may be optionally substituted with one or more substituents.
• alkynyl refers to an unsaturated hydrocarbon chain that may be a straight chain or branched chain, containing the 2 to 12 carbon atoms and at least one carbon-carbon triple bond. Alkynyl groups may be optionally substituted with one or more substituents. The sp 2 or sp carbons of an alkenyl group and an alkynyl group, respectively, may optionally be the point of attachment of the alkenyl or alkynyl groups.
• alkoxy refers to an -O-alkyl radical.
• halogen means -F, -Cl, -Br or -I.
• cycloalkyl refers to a hydrocarbon 3-8 membered monocyclic or 7-14 membered bicyclic ring system having at least one saturated ring or having at least one non-aromatic ring, wherein the non-aromatic ring may have some degree of unsaturation.
• Cycloalkyl groups may be optionally substituted with one or more substituents. In one embodiment, 0, 1, 2, 3, or 4 atoms of each ring of a cycloalkyl group may be substituted by a substituent.
• cycloalkyl group examples include cyclopropyl, cyclopentyl, cyclohexyl, cyclobutyl, cycloheptyl, cyclopentenyl, cyclopentadienyl, cyclohexenyl, cyclohexadienyl, and the like.
• aryl refers to a hydrocarbon monocyclic, bicyclic or tricyclic aromatic ring system.
• Aryl groups may be optionally substituted with one or more substituents. In one embodiment, 0, 1, 2, 3, 4, 5 or 6 atoms of each ring of an aryl group may be substituted by a substituent. Examples of aryl groups include phenyl, naphthyl, anthracenyl, fluorenyl, indenyl, azulenyl, and the like.
• heteroaryl refers to an aromatic 5-8 membered monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic ring system having 1-4 ring heteroatoms if monocyclic, 1-6 heteroatoms if bicyclic, or 1-9 heteroatoms if tricyclic, said heteroatoms selected from O, N, or S, and the remainder ring atoms being carbon (with appropriate hydrogen atoms unless otherwise indicated).
• Heteroaryl groups may be optionally substituted with one or more substituents. In one embodiment, 0, 1, 2, 3, or 4 atoms of each ring of a heteroaryl group may be substituted by a substituent.
• heteroaryl groups include pyridyl, furanyl, thienyl, pyrrolyl, oxazolyl, oxadiazolyl, imidazolyl thiazolyl, isoxazolyl, quinolinyl, pyrazolyl, isothiazolyl, pyridazinyl, pyrimidinyl, pyrazinyl, triazinyl, isoquinolinyl, indazolyl, and the like.
• heterocycloalkyl refers to a nonaromatic 3-8 membered monocyclic, 7-12 membered bicyclic, or 10-14 membered tricyclic ring system comprising 1-3 heteroatoms if monocyclic, 1-6 heteroatoms if bicyclic, or 1-9 heteroatoms if tricyclic, said heteroatoms selected from O, N, S, B, P or Si, wherein the nonaromatic ring system is completely saturated.
• Heterocycloalkyl groups may be optionally substituted with one or more substituents. In one embodiment, 0, 1, 2, 3, or 4 atoms of each ring of a heterocycloalkyl group may be substituted by a substituent.
• heterocycloalkyl groups include piperidinyl, piperazinyl, tetrahydropyranyl, morpholinyl, thiomorpholinyl, 1,3-dioxolane, tetrahydrofuranyl, tetrahydrothienyl, thiirenyl, and the like.
• alkylamino refers to an amino substituent which is further substituted with one or two alkyl groups.
• aminoalkyl refers to an alkyl substituent which is further substituted with one or more amino groups.
• hydroxyalkyl or hydroxylalkyl refers to an alkyl substituent which is further substituted with one or more hydroxyl groups.
• mercaptoalkyl hydroxyalkyl, mercaptoalkoxy, sulfonylalkyl, sulfonylaryl, alkylcarbonyl, and alkylcarbonylalkyl may be optionally substituted with one or more substituents.
• Acids and bases useful in the methods herein are known in the art.
• Acid catalysts are any acidic chemical, which can be inorganic (e.g., hydrochloric, sulfuric, nitric acids, aluminum trichloride) or organic (e.g., camphorsulfonic acid, p-toluenesulfonic acid, acetic acid, ytterbium triflate) in nature. Acids are useful in either catalytic or
• Bases are any basic chemical, which can be inorganic (e.g., sodium bicarbonate, potassium hydroxide) or organic (e.g., triethylamine, pyridine) in nature. Bases are useful in either catalytic or stoichiometric amounts to facilitate chemical reactions.
• Alkylating agents are any reagent that is capable of effecting the alkylation of the functional group at issue (e.g., oxygen atom of an alcohol, nitrogen atom of an amino group).
• Alkylating agents are known in the art, including in the references cited herein, and include alkyl halides (e.g., methyl iodide, benzyl bromide or chloride), alkyl sulfates (e.g., methyl sulfate), or other alkyl group-leaving group combinations known in the art.
• Leaving groups are any stable species that can detach from a molecule during a reaction (e.g., elimination reaction, substitution reaction) and are known in the art, including in the references cited herein, and include halides (e.g., I-, C1-, Br-, F-), hydroxy, alkoxy (e.g., - OMe, -O-t-Bu), acyloxy anions (e.g., -OAc, -OC(0)CF 3 ), sulfonates (e.g., mesyl, tosyl), acetamides (e.g., -NHC(O)Me), carbamates (e.g., N(Me)C(0)0t-Bu), phosphonates (e.g., -0P(0)(0Et) 2 ), water or alcohols (protic conditions), and the like.
• halides e.g., I-, C1-, Br-, F-
• substituents on any group can be at any atom of that group, wherein any group that can be substituted (such as, for example, alkyl, alkenyl, alkynyl, aryl, aralkyl, heteroaryl, heteroaralkyl, cycloalkyl, heterocycloalkyl) can be optionally substituted with one or more substituents (which may be the same or different), each replacing a hydrogen atom.
• substituents on any group can be at any atom of that group, wherein any group that can be substituted (such as, for example, alkyl, alkenyl, alkynyl, aryl, aralkyl, heteroaryl, heteroaralkyl, cycloalkyl, heterocycloalkyl) can be optionally substituted with one or more substituents (which may be the same or different), each replacing a hydrogen atom.
• suitable substituents include, but are not limited to alkyl, alkenyl, alkynyl, cycl
• heterocycloalkyl aralkyl, heteroaralkyl, aryl, heteroaryl, halogen, haloalkyl, cyano, nitro, alkoxy, aryloxy, hydroxyl, hydroxylalkyl, oxo (i.e., carbonyl), carboxyl, formyl, alkylcarbonyl, alkylcarbonylalkyl, alkoxycarbonyl, alkylcarbonyloxy, aryloxycarbonyl, heteroaryloxy, heteroaryloxycarbonyl, thio, mercapto, mercaptoalkyl, arylsulfonyl, amino, aminoalkyl, dialkylamino, alkylcarbonylamino, alkylaminocarbonyl,
• Bcl-2 as used herein alone or as part of a group references to a member of the Bcl-2 family of proteins comprise the following Bcl-xL, MCL-1, Bcl-W, BFL-1/A1, Bcl- B, BAX, BAK, and BOK.
• Compounds delineated herein include salt, hydrate and solvates thereof. They include all compounds delineated in schemes herein, whether intermediate or final compounds in a process.
• the compounds herein may also contain linkages (e.g., carbon-carbon bonds) wherein bond rotation is restricted about that particular linkage, e.g. restriction resulting from the presence of a ring or double bond. Accordingly, all cis/trans and E/Z isomers are expressly included in the present invention.
• the compounds herein may also be represented in multiple tautomeric forms, in such instances, the invention expressly includes all tautomeric forms of the compounds described herein, even though only a single tautomeric form may be represented. All such isomeric forms of such compounds herein are expressly included in the present invention. All crystal forms and polymorphs of the compounds described herein are expressly included in the present invention.
• isomers is intended to include diastereoisomers, enantiomers, regioisomers, structural isomers, rotational isomers, tautomers, and the like.
• the methods of the invention may be carried out with an enantiomerically enriched compound, a racemate, or a mixture of diastereomers.
• Preferred enantiomerically enriched compounds have an enantiomeric excess of 50% or more, more preferably the compound has an enantiomeric excess of 60%, 70%, 80%, 90%, 95%, 98%, or 99% or more.
• only one enantiomer or diastereomer of a chiral compound of the invention is administered to cells or a subject.
• the compounds of the formulae herein can be synthesized using methodology similarly to that described in Chen, Q. Y.; Liu, Y.; Cai, W.; Luesch, H. Improved Total Synthesis and Biological Evaluation of Potent Apratoxin S4 Based Anticancer Agents with Differential Stability and Further Enhanced Activity. J. Med. Chem. 2014, 57 (7):p. 3011-302; and in WO2012/158933.
• the invention provides a method of degrading Bcl-2 proteins, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof.
• a compound described herein e.g., Formula (I)
• the compound is administered in vitro.
• the compound is administered in vivo.
• the method further comprises administering the compound to a subject.
• the invention provides a method of treating a disease or disorder in a subject in need thereof, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof.
• a compound described herein e.g., Formula (I)
• the disease is cancer.
• the cancer is a solid tumor.
• the cancer is chronic lymphocyctic leukemia.
• the subject is a mammal.
• the subject is a human.
• the invention provides a method of treating a subject suffering from or susceptible to a disease or disorder, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a
• the disease is cancer.
• the cancer is a solid tumor.
• the cancer is chronic lymphocyctic leukemia.
• the subject is a mammal.
• the subject is a human.
• the invention provides a method of treating a Bcl-2-mediated cancer in a subject in need thereof, the method comprising administering an effective amount of a compound described herein (e.g ., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof, such that platelet toxicity is reduced relative to other Bcl-2 inhibitors.
• a compound described herein e.g ., Formula (I)
• a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof such that platelet toxicity is reduced relative to other Bcl-2 inhibitors.
• the Bcl-2-mediated cancer is chronic lymphocyctic leukemia.
• the other Bcl-2 inhibitor is ABT-737, navitoclax (ABT-263), venetoclax (ABT-199), obatoclax (GX 15-070), (-)-gossypol (AT- 101), sabutoclax (BI-97C1), TW-37, BM-1252 (APG-1252), or A-1155463.
• the other Bcl-2 inhibitor is venetoclax or ABT-263.
• the invention provides a method of treating a subject suffering from or susceptible to a Bcl-2-mediated cancer, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a
• the Bcl-2- mediated cancer is chronic lymphocyctic leukemia.
• the other Bcl-2 inhibitor is ABT-737, navitoclax (ABT-263), venetoclax (ABT-199), obatoclax (GX 15- 070), (-)-gossypol (AT-101), sabutoclax (BI-97C1), TW-37, BM-1252 (APG-1252), or A- 1155463.
• the other Bcl-2 inhibitor is venetoclax or ABT-263.
• the invention provides a method of treating a Bcl-2-mediated cancer in a subject in need thereof, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof, such that ratio of human platelet toxicity (IC50) to anticancer activity (IC50) is less than that of other Bcl-2 inhibitors.
• a compound described herein e.g., Formula (I)
• a pharmaceutically acceptable salt, hydrate, solvate, or prodrug thereof such that ratio of human platelet toxicity (IC50) to anticancer activity (IC50) is less than that of other Bcl-2 inhibitors.
• the Bcl-2-mediated cancer is chronic lymphocyctic leukemia.
• the other Bcl-2 inhibitor is venetoclax or ABT-263.
• the anticancer activity is measured in MOLT-4 cells.
• the ratio is greater than 1.
• the ratio is greater than
• the invention provides a method of treating a subject suffering from or susceptible to a Bcl-2-mediated cancer, the method comprising administering an effective amount of a compound described herein (e.g., Formula (I)), or a
• the Bcl-2-mediated cancer is chronic lymphocyctic leukemia.
• the other Bcl-2 inhibitor is venetoclax or ABT-263.
• the anticancer activity is measured in MOLT-4 cells.
• the ratio is greater than 1.
• the ratio is greater than 10.
• the ratio is greater than 20.
• the ratio is greater than 40.
• the present disclosure encompasses a method of selectively killing one or more cancer cells in a sample, the method comprising contacting a composition comprising an effective amount of a compound of Formula (I) with the sample.
• the present disclosure encompasses a method of selectively killing one or more cancer cells in a subject in need thereof, the method comprising administering to the subject a composition comprising a therapeutically effective amount of a compound of Formula
• a composition of the invention does not appreciably kill non-cancer cells at the same concentration.
• a composition of the invention has reduced platelet toxicity and retained or improved toxicity in cancer cells when compared to similar BCL-2 inhibitors.
• the median lethal dose or LD50 of the inhibitor in non-cancer cells may be about 5 to about 50 times higher than the LD50 of the inhibitor in cancer cells.
• the LD50 is the concentration of inhibitor required to kill half the cells in the cell sample.
• the LD50 of the inhibitor in non-cancer cells may be greater than about 5, about 6, about 7, about 8, about 9 or about 10 times higher than the LD50 of the inhibitor in cancer cells.
• the LD50 of the inhibitor in non-cancer cells may be greater than about 10, about 15, about 20, about 25, about 30, about 35, about 40, about 45, or about 50 times higher than the LD50 of the inhibitor in cancer cells.
• the LD50 of the inhibitor in non-cancer cells may be greater than 50 times higher than the LD50 of the inhibitor in cancer cells. In a specific embodiment, the LD50 of the inhibitor in non-cancer cells is greater than 10 times higher than the LD500 of the inhibitor in cancer cells. In another specific embodiment, the LD50 of the inhibitor in non-cancer cells is greater than 20 times higher than the LD50 of the inhibitor in cancer cells.
• Non-limiting examples of neoplasms or cancers that may be treated include acute lymphoblastic leukemia, acute myeloid leukemia, adrenocortical carcinoma, AIDS- related cancers, AIDS-related lymphoma, anal cancer, appendix cancer, astrocytomas (childhood cerebellar or cerebral), basal cell carcinoma, bile duct cancer, bladder cancer, bone cancer, brainstem glioma, brain tumors (cerebellar astrocytoma, cerebral astrocytoma/malignant glioma, ependymoma, medulloblastoma, supratentorial primitive neuroectodermal tumors, visual pathway and hypothalamic gliomas, breast cancer, bronchial adenomas/carcinoids, Burkitt lymphoma, carcinoid tumors (childhood, gastrointestinal), carcinoma of unknown primary, central nervous system lymphoma (primary), cerebellar astrocytoma, cerebral
• myelogenous, hairy cell), lip and oral cavity cancer liver cancer (primary), lung cancers (non-small cell, small cell), lymphomas (AIDS -related, Burkitt, cutaneous T-cell, Hodgkin, non-Hodgkin, primary central nervous system), macroglobulinemia
• myeloma/plasma cell neoplasm mycosis fungoides, myelodysplastic syndromes, myelodysplastic/myeloproliferative diseases, myelogenous leukemia (chronic), myeloid leukemias (adult acute, childhood acute), multiple myeloma, myeloproliferative disorders (chronic), nasal cavity and paranasal sinus cancer, nasopharyngeal carcinoma, neuroblastoma, non-Hodgkin lymphoma, non-small cell renal pelvis transitional cell cancer, urethral cancer, uterine cancer (endometrial), uterine sarcoma, vaginal cancer, visual pathway and hypothalamic glioma (childhood), vulvar cancer, Waldenstrom macroglobulinemia, and Wilms tumor (childhood).
• myeloma/plasma cell neoplasm mycosis fungoides, myelodysplastic syndromes, myelodysplastic
• a cancer is selected from the group consisting of synovial sarcoma, Burkitt lymphoma, Hodgkin lymphoma, multiple myeloma, neuroblastoma, glioblastoma, small cell lung cancer, pancreatic cancer, hepatocellular (liver) cancer, endometrial cancer, ovarian cancer, cervical cancer, breast cancer, prostate cancer, bladder cancer, melanoma,
• choriocarcinoma kidney cancer (renal cell cancer), thyroid cancer, and leukemias (acute lymphoblastic, acute myeloid, chronic lymphocytic, and chronic myelogenous).
• the invention provides a pharmaceutical composition
• a pharmaceutical composition comprising the compound of any of the formulae herein (e.g., Formula (I)), and a pharmaceutically acceptable carrier.
• the invention provides a pharmaceutical composition wherein the compound of any of the formulae herein is a compound of any of Formula I and a pharmaceutically acceptable carrier.
• the composition further comprises an additional agent.
• the additional agent is an anti-cancer agent.
• the anticancer agent is alkylating agent, an anti-metabolite, an anti-tumor antibiotic, an anti-cytoskeletal agent, a topoisomerase inhibitor, an anti- hormonal agent, a targeted therapeutic agent, a photodynamic therapeutic agent, or a combination thereof.
• Non-limiting examples of suitable alkylating agents include altretamine, benzodopa, busulfan, carboplatin, carboquone, carmustine (BCNU), chlorambucil, chlomaphazine, cholophosphamide, chlorozotocin, cisplatin, cyclosphosphamide, dacarbazine (DTIC), estramustine, fotemustine, ifosfamide, improsulfan, lipoplatin, lomustine (CCNU), mafosfamide, mannosulfan, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, meturedopa, mustine (mechlorethamine), mitobronitol, nimustine, novembichin, oxaliplatin, phenesterine, piposulfan, prednimustine, ranimustine, satraplatin, semustine, temozolomide, thio
• Suitable anti-metabolites include, but are not limited to aminopterin, ancitabine, azacitidine, 8-azaguanine, 6-azauridine, capecitabine, carmofur (l-hexylcarbomoyl-5- fluorouracil), cladribine, clofarabine, cytarabine (cytosine arabinoside (Ara-C)), decitabine, denopterin, dideoxyuridine, doxifluridine, enocitabine, floxuridine, fludarabine, 5-fluorouracil, gemcetabine, hydroxyurea (hydroxycarbamide), leucovorin (folinic acid), 6-mercaptopurine, methotrexate, nafoxidine, nelarabine, oblimersen, pemetrexed, pteropterin, raltitrexed, tegofur, tiazofurin, thiamiprine, tioguanine
• Non-limiting examples of suitable anti-tumor antibiotics include aclacinomysin, aclarubicin, actinomycins, adriamycin, aurostatin (for example, monomethyl auristatin E), authramycin, azaserine, bleomycins, cactinomycin, calicheamicin, carabicin, caminomycin, carzinophilin, chromomycins, dactinomycin, daunorubicin, detorubicin, 6- diazo-5-oxo-L-norleucine, doxorubicin, epirubicin, epoxomicin, esorubicin, idarubicin, marcellomycin, mitomycins, mithramycin, mycophenolic acid, nogalamycin,
• olivomycins peplomycin, plicamycin, potfiromycin, puromycin, quelamycin, rodorubicin, sparsomycin, streptonigrin, streptozocin, tubercidin, valrubicin, ubenimex, zinostatin, and zorubicin.
• Non-limiting examples of suitable anti-cytoskeletal agents include cabazitaxel, colchicines, demecolcine, docetaxel, epothilones, ixabepilone, macromycin, omacetaxine mepesuccinate, ortataxel, paclitaxel (for example, DHA-paclitaxel), taxane, tesetaxel, vinblastine, vincristine, vindesine, and vinorelbine.
• Suitable topoisomerase inhibitors include, but are not limited to, amsacrine, etoposide (VP- 16), irinotecan, mitoxantrone, RFS 2000, teniposide, and topotecan.
• suitable anti-hormonal agents such as aminoglutethimide, antiestrogen, aromatase inhibiting 4(5)-imidazoles, bicalutamide, finasteride, flutamide, fluvestrant, goserelin, 4-hydroxytamoxifen, keoxifene, leuprolide, LY117018, mitotane, nilutamide, onapristone, raloxifene, tamoxifen, toremifene, and trilostane.
• targeted therapeutic agents include, without limit, monoclonal antibodies such as alemtuzumab, cartumaxomab, edrecolomab, epratuzumab, gemtuzumab, gemtuzumab ozogamicin, glembatumumab vedotin, ibritumomab tiuxetan, reditux, rituximab, tositumomab, and trastuzumab; protein kinase inhibitors such as bevacizumab, cetuximab, crizonib, dasatinib, erlotinib, gefitinib, imatinib, lapatinib, mubritinib, nilotinib, panitumumab, pazopanib, sorafenib, sunitinib, toceranib, and vandetanib;
• monoclonal antibodies such as alem
• Angiogeneisis inhibitors such as angiostatin, bevacizumab, denileukin diftitox, endostatin, everolimus, genistein, interferon alpha, interleukin-2, interleukin- 12, pazopanib, pegaptanib, ranibizumab, rapamycin (sirolimus), temsirolimus, and thalidomide; and growth inhibitory polypeptides such as bortazomib, erythropoietin, interleukins ( e.g ., IL-1, IL-2, IL-3, IL-6), leukemia inhibitory factor, interferons, romidepsin, thrombopoietin, TNF-a, CD30 ligand, 4- IBB ligand, and Apo-1 ligand.
• growth inhibitory polypeptides such as bortazomib, erythropoietin, interleu
• Non-limiting examples of photodynamic therapeutic agents include
• aminolevulinic acid methyl aminolevulinate
• retinoids alitretinon, tamibarotene, tretinoin
• temoporfin alitretinon, tamibarotene, tretinoin
• antineoplastic agents include anagrelide, arsenic trioxide, asparaginase, bexarotene, bropirimine, celecoxib, chemically linked Fab, efaproxiral, etoglucid, fermginol, lonidamide, masoprocol, miltefosine, mitoguazone, talapanel, trabectedin, and vorinostat.
• the invention provides a kit comprising an effective amount of a compound of any of the formulae herein (e.g., Formula (I)), in unit dosage form, together with instructions for administering the compound to a subject suffering from or susceptible to cancer.
• the cancer is a solid tumor.
• the cancer is chronic lymphocyctic leukemia.
• pharmaceutically acceptable salts or “pharmaceutically acceptable carrier” is meant to include salts of the active compounds which are prepared with relatively nontoxic acids or bases, depending on the particular substituents found on the compounds described herein.
• base addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired base, either neat or in a suitable inert solvent.
• pharmaceutically acceptable base addition salts include sodium, potassium, calcium, ammonium, organic amino, or magnesium salt, or a similar salt.
• acid addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired acid, either neat or in a suitable inert solvent.
• Examples of pharmaceutically acceptable acid addition salts include those derived from inorganic acids like hydrochloric, hydrobromic, nitric, carbonic, monohydrogencarbonic, phosphoric, monohydrogenphosphoric, dihydrogenphosphoric, sulfuric, monohydrogensulfuric, hydriodic, or phosphorous acids and the like, as well as the salts derived from relatively nontoxic organic acids like acetic, propionic, isobutyric, maleic, malonic, benzoic, succinic, suberic, fumaric, lactic, mandelic, phthalic, benzenesulfonic, p-tolylsulfonic, citric, tartaric, methanesulfonic, and the like.
• inorganic acids like hydrochloric, hydrobromic, nitric, carbonic, monohydrogencarbonic, phosphoric, monohydrogenphosphoric, dihydrogenphosphoric, sulfuric, monohydrogensulfuric, hydriodic, or phosphorous acids and
• salts of amino acids such as arginate and the like, and salts of organic acids like glucuronic or galactunoric acids and the like (see, e.g., Berge et ah, Journal of Pharmaceutical Science 66:1-19 (1977)).
• Certain specific compounds of the present invention contain both basic and acidic functionalities that allow the compounds to be converted into either base or acid addition salts.
• Other pharmaceutically acceptable carriers known to those of skill in the art are suitable for the present invention.
• the neutral forms of the compounds may be regenerated by contacting the salt with a base or acid and isolating the parent compound in the conventional manner.
• the parent form of the compound differs from the various salt forms in certain physical properties, such as solubility in polar solvents, but otherwise the salts are equivalent to the parent form of the compound for the purposes of the present invention.
• the present invention provides compounds which are in a prodrug form.
• Prodrugs of the compounds described herein are those compounds that readily undergo chemical changes under physiological conditions to provide the compounds of the present invention.
• prodrugs can be converted to the compounds of the present invention by chemical or biochemical methods in an ex vivo environment. For example, prodrugs can be slowly converted to the compounds of the present invention when placed in a transdermal patch reservoir with a suitable enzyme or chemical reagent.
• Certain compounds of the present invention can exist in unsolvated forms as well as solvated forms, including hydrated forms. In general, the solvated forms are equivalent to unsolvated forms and are intended to be encompassed within the scope of the present invention. Certain compounds of the present invention may exist in multiple crystalline or amorphous forms. In general, all physical forms are equivalent for the uses
• the invention also provides a pharmaceutical composition, comprising an effective amount a compound described herein and a pharmaceutically acceptable carrier.
• compound is administered to the subject using a pharmaceutic ally- acceptable formulation, e.g., a pharmaceutically-acceptable formulation that provides sustained delivery of the compound to a subject for at least 12 hours, 24 hours, 36 hours, 48 hours, one week, two weeks, three weeks, or four weeks after the pharmaceutically- acceptable formulation is administered to the subject.
• Actual dosage levels and time course of administration of the active ingredients in the pharmaceutical compositions of this invention may be varied so as to obtain an amount of the active ingredient which is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic (or unacceptably toxic) to the patient.
• At least one compound according to the present invention is administered in a pharmaceutically effective amount to a subject in need thereof in a pharmaceutical carrier by intravenous, intramuscular, subcutaneous, or intracerebro ventricular injection or by oral administration or topical application.
• a compound of the invention may be administered alone or in conjunction with a second, different therapeutic.
• in conjunction with is meant together, substantially simultaneously or sequentially.
• a compound of the invention is administered acutely.
• the compound of the invention may therefore be administered for a short course of treatment, such as for about 1 day to about 1 week.
• the compound of the invention may be administered over a longer period of time to ameliorate chronic disorders, such as, for example, for about one week to several months depending upon the condition to be treated.
• pharmaceutically effective amount as used herein is meant an amount of a compound of the invention, high enough to significantly positively modify the condition to be treated but low enough to avoid serious side effects (at a reasonable benefit/risk ratio), within the scope of sound medical judgment.
• a pharmaceutically effective amount of a compound of the invention will vary with the particular goal to be achieved, the age and physical condition of the patient being treated, the severity of the underlying disease, the duration of treatment, the nature of concurrent therapy and the specific apratoxin compound employed. For example, a therapeutically effective amount of a compound of the invention administered to a child or a neonate will be reduced proportionately in accordance with sound medical judgment. The effective amount of a compound of the invention will thus be the minimum amount which will provide the desired effect.
• Dispersions can also be prepared, for example, in glycerol, liquid polyethylene glycols, and mixtures thereof, and in oils.
• the pharmaceutical forms suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the
• the carrier can be a solvent or dispersion medium containing, for example, water, DMSO, ethanol, polyol (for example, glycerol, propylene glycol, liquid polyethylene glycol, and the like), suitable mixtures thereof and vegetable oils.
• the proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion.
• isotonic agents for example, sugars or sodium chloride. Prolonged absorption of the injectable compositions can be brought about by the use in the compositions of agents delaying absorption, for example, aluminum monostearate and gelatin.
• Sterile injectable solutions are prepared by incorporating the compound of the invention in the required amount in the appropriate solvent with various of the other ingredients enumerated above, as required, followed by filtered sterilization.
• dispersions are prepared by incorporating the various sterilized compounds into a sterile vehicle which contains the basic dispersion medium and the required other ingredients from those enumerated above.
• the preferred methods of preparation are vacuum-drying and the freeze-drying technique which yields a powder of the active ingredient plus any additional desired ingredient from previously sterile-filtered solution thereof.
• the compound may be incorporated with excipients and used in the form of ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, and the like.
• Compositions or preparations according to the present invention are prepared so that an oral dosage unit form contains compound concentration sufficient to treat a disorder in a subject.
• substances which can serve as pharmaceutical carriers are sugars, such as lactose, glucose and sucrose; starches such as com starch and potato starch; cellulose and its derivatives such as sodium carboxymethycellulose, ethylcellulose and cellulose acetates; powdered tragancanth; malt; gelatin; talc; stearic acids;
• magnesium stearate calcium sulfate
• vegetable oils such as peanut oils, cotton seed oil, sesame oil, olive oil, corn oil and oil of theobroma
• polyols such as propylene glycol, glycerine, sorbitol, manitol, and polyethylene glycol
• agar alginic acids; pyrogen-free water; isotonic saline; and phosphate buffer solution; skim milk powder; as well as other non-toxic compatible substances used in pharmaceutical formulations such as Vitamin C, estrogen and echinacea, for example.
• Wetting agents and lubricants such as sodium lauryl sulfate, as well as coloring agents, flavoring agents, lubricants, excipients, tableting agents, stabilizers, anti-oxidants and preservatives, can also be present.
• Example 20 4-(4-((4'-chloro-4-((6-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-
• Cancer cells from different tissue origins including acute lymphoblastic leukemia (MOLT4 and RS4;11), small cell lung cancer (NCTH146 or simply H146), and multiple myeloma (EJM and H929) were incubated with increasing concentrations of Examples 1- 21 or ABT-263 for 72 h.
• Cell viability was measured by tetrazolium-based MTS assay. 5xl0 4 to lxlO 5 suspension cells or 3xl0 3 to 5xl0 3 adherent cells were seeded and treated in 96-well plates for 72 h.
• the EC50 values of individual agents were calculated with GraphPad Prism.
• MOLT4 cells and human platelets were incubated with increasing concentrations of test compounds for 16 h.
• the cells were harvested and lysed in RIPA lysis buffer supplemented with protease and phosphatase inhibitor cocktails.
• An equal amount of protein (20 pg/lane) was resolved on a pre-cast 4-20% SDS-PAGE gel. Proteins were subsequently transferred to NOVEX PVDF membranes by electrophoresis. The membranes were blocked in blocking buffer (5% non-fat dry milk in TBS-T), and incubated with primary antibodies (at optimized concentrations) overnight at 4 °C. After three washings in TBS-T, the membranes were incubated with an appropriate HRP- conjugated secondary antibody for 1 h at room temperature.
• AlphaLISA assay was used to measure luminescence signals arisen from proximity of BCL-X L bounded acceptor beads and VHL- or CRBN- bounded donor beads. Briefly, to a 96-well PCR plate, 10 pL of 20 nM 6-His tagged BCL-X L protein was mixed with 10 pL of 20 nM GST-tagged VHL complex protein and 10 pL of serially diluted testing compounds. After incubating at room temperature for 30 min, 5 pL of 160 pg/mL Glutathione donor beads (PerkinElmer) was added and the mixture was incubated at dark for 15 min.
• Table 1 demonstrates that various compounds of Formula (I) degradation of BCL- XL in MOLT-4 and RS4 cells, and is further illustrated in Figure 1.
• Figure 2 depicts the inhibitory effects of both Compound 53 and ABT-263 on MOLT-4 cells and human platelets.
• Compound 53 is both more potent than ABT-263 in MOLT-4 cells (anti-cancer effect), but also demonstrates substantially less effects on human platelets than ABT-263, as summarized below in Table 2.
• the compounds of the present invention e.g . , Formula (I)
• possess a far superior therapeutic index e.g. ,
• Platelet/MOLT-4 ratio than representative Bcl-2 inhibitors in the art (e.g, ABT-263).
• the reaction was stirred for 2 h at room temperature and then quenched with saturated NaHCC>3.
• the resulting mixture was diluted with 50 ml_ DCM and the organic portion was washed with water followed by brine.
• the organic portion was dried over anhydrous Na2SC>4, filtered, and solvent was removed under reduced pressure to afford the crude product which was used in the next step without further purification.
• the crude mesylate was dissolved in DMF (25 ml_) followed by the addition of K2CO3 (3.1 g, 22.64 mmol) and ethyl 4-(piperazin-1 -yl)benzoate (3.4 g, 14.71 mmol). The mixture was stirred at 75 °C for 24 h. Upon consumption of the starting material (monitored by TLC), the mixture was allowed to warm to room temperature and diluted with 150 ml_ EtOAc and successively washed with water (25 mL x 3) and brine. The organic portion was dried over anhydrous Na2SC>4, filtered, and solvent was removed under reduced pressure.
• Example 25 Preparation of degraders #11 -13.
• Degraders #14- 20 was prepared following the same procedure as degrader 1 was prepared with amine 1.18 in place of amine 1.10.
• Example 27 Preparation of degraders #21-23.
• Degraders #21 - 23 were prepared following the same procedure as degrader 1 was prepared with amine 1.21 in place of amine 1.10.
• the resulting mixture was stirred at room temperature for 8 h. After the completion of the reaction, the reaction mixture was diluted with DCM and then washed with water followed by brine. The organic portion was dried over anhydrous MgSC>4, filtered, and then concentrated under reduced pressure. The crude product was purified by silica gel column chromatography to afford the title compound.
• Degraders #24- 26 was prepared following the same procedure as degrader 1 was prepared with amine 1.24 in place of amine 1.10.
• Degraders #30-32 was prepared following the same procedure as DEGRADER 1 was prepared, only amine 1.30 was taken in place amine 1.10.
• Degraders #36- 38 were prepared by following the same procedure as that of degrader 1 with amine 1.35 in place of amine 1.10.
• Example 33 Preparation of degraders #39 and #40.
• 2,2'-(1 ,4-frai7s-cyclohexanediyl)diacetic acid 7.3: To a stirring solution of compound 7.2 (1.0 equiv.) in ethanol was added KOH (5.0 equiv.) solution and the reaction was stirred 8h at 70 °C. Once the reaction was complete, the pH of the reaction was adjusted to pH 7 with 3N HCI solution. The ethanol from the reaction mixture was then evaporated and the remaining solid was collected by filtration. The solid was washed with cold water and diethyl ether. The solid then dried in reduced pressure to the title compound 7.3.
• Example 35 Preparation of degraders #43 and #44.
• Degrader #44 was prepared from the aldehyde 1.12b by following the same protocol as degrader 17 was prepared from aldehyde 1.12.
• Degraders #46- 48 was prepared following the same procedure as that of degrader 1 with amine 1.38s in place of amine 1.10.
• Degraders #49-51 were prepared from aldehyde 1.12 by following the same synthetic protocol as degrader #46 was prepared from aldehyde 1.12, with tert-
• Example 40 Preparation of degraders #55 and #56.
• the resulting mixture was stirred at room temperature for 8 h.
• the reaction mixture was diluted with DCM and then washed with water followed by brine.
• the organic portion was dried over anhydrous MgSC>4, filtered, and concentrated under reduced pressure.
• the crude product was purified by silica gel column chromatography to afford the title compound.
• Degraders #67-69 were prepared by following the same synthetic protocol as 20 that of degrader #52.

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