WO2008121634A2 - Nucleoside phosphoramidate prodrugs - Google Patents

Nucleoside phosphoramidate prodrugs Download PDF

Info

Publication number
WO2008121634A2
WO2008121634A2 PCT/US2008/058183 US2008058183W WO2008121634A2 WO 2008121634 A2 WO2008121634 A2 WO 2008121634A2 US 2008058183 W US2008058183 W US 2008058183W WO 2008121634 A2 WO2008121634 A2 WO 2008121634A2
Authority
WO
WIPO (PCT)
Prior art keywords
methyl
fluoro
hydroxy
phosphorylamino
phenoxy
Prior art date
Application number
PCT/US2008/058183
Other languages
French (fr)
Other versions
WO2008121634A3 (en
Inventor
Michael J. Sofia
Jinfa Du
Peiyuan Wang
Dhanapalan Nagarathnam
Original Assignee
Pharmasset, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=39808855&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=WO2008121634(A2) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Priority to CN202310695479.4A priority Critical patent/CN116731099A/en
Priority to KR1020147036573A priority patent/KR101527701B1/en
Priority to DK08732818.3T priority patent/DK2203462T3/en
Priority to EP14179358.8A priority patent/EP2826784B1/en
Priority to BRPI0823519A priority patent/BRPI0823519A2/en
Priority to CA2682230A priority patent/CA2682230C/en
Priority to PL14179358T priority patent/PL2826784T3/en
Priority to EP14169060.2A priority patent/EP2801580B1/en
Priority to SI200831244T priority patent/SI2203462T1/en
Priority to NZ579880A priority patent/NZ579880A/en
Priority to RU2009139968K priority patent/RU2651892C2/en
Priority to MX2009010401A priority patent/MX2009010401A/en
Priority to JP2010502196A priority patent/JP5318085B2/en
Priority to RU2009139968A priority patent/RU2651892C3/en
Priority to CN201811348434.5A priority patent/CN109776637B/en
Application filed by Pharmasset, Inc. filed Critical Pharmasset, Inc.
Priority to CN202310694712.7A priority patent/CN116731098A/en
Priority to AU2008232827A priority patent/AU2008232827C1/en
Priority to CN200880018024.2A priority patent/CN101918425B/en
Priority to BRPI0809654-6A priority patent/BRPI0809654A2/en
Priority to KR1020127004146A priority patent/KR101525293B1/en
Priority to PL08732818T priority patent/PL2203462T3/en
Priority to KR1020097022652A priority patent/KR101432860B1/en
Priority to EP08732818.3A priority patent/EP2203462B2/en
Priority to EP23197008.8A priority patent/EP4282482A3/en
Priority to ES08732818.3T priority patent/ES2492470T3/en
Publication of WO2008121634A2 publication Critical patent/WO2008121634A2/en
Priority to ZA2009/06647A priority patent/ZA200906647B/en
Priority to IL201239A priority patent/IL201239A/en
Publication of WO2008121634A3 publication Critical patent/WO2008121634A3/en
Priority to IL217228A priority patent/IL217228A/en
Priority to IL222810A priority patent/IL222810A0/en
Priority to HRP20140667AT priority patent/HRP20140667T1/en
Priority to CY2014047C priority patent/CY2014047I1/en
Priority to LU92600C priority patent/LU92600I2/en
Priority to FR14C0082C priority patent/FR14C0082I2/en
Priority to NL300704C priority patent/NL300704I2/nl
Priority to LTPA2014040C priority patent/LTC2203462I2/en
Priority to PH12014502771A priority patent/PH12014502771A1/en
Priority to NO2021031C priority patent/NO2021031I1/en

Links

Classifications

    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • A61K31/7064Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines
    • A61K31/7068Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines having oxo groups directly attached to the pyrimidine ring, e.g. cytidine, cytidylic acid
    • A61K31/7072Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines having oxo groups directly attached to the pyrimidine ring, e.g. cytidine, cytidylic acid having two oxo groups directly attached to the pyrimidine ring, e.g. uridine, uridylic acid, thymidine, zidovudine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/16Purine radicals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • A61K31/7064Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • A61K31/7064Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines
    • A61K31/7076Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines containing purines, e.g. adenosine, adenylic acid
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K45/00Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
    • A61K45/06Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/16Antivirals for RNA viruses for influenza or rhinoviruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/18Antivirals for RNA viruses for HIV
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/20Antivirals for DNA viruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H17/00Compounds containing heterocyclic radicals directly attached to hetero atoms of saccharide radicals
    • C07H17/02Heterocyclic radicals containing only nitrogen as ring hetero atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/06Pyrimidine radicals
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/06Pyrimidine radicals
    • C07H19/10Pyrimidine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/16Purine radicals
    • C07H19/20Purine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • A61K31/7064Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines
    • A61K31/7068Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines having oxo groups directly attached to the pyrimidine ring, e.g. cytidine, cytidylic acid
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/06Pyrimidine radicals
    • C07H19/073Pyrimidine radicals with 2-deoxyribosyl as the saccharide radical
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • the present invention pertains to nucleoside phosphoramidates and their use as agents for treating viral diseases. These compounds are inhibitors of RNA-dependent RNA viral replication and are useful as inhibitors of HCV NS5B polymerase, as inhibitors of HCV replication and for treatment of hepatitis C infection in mammals.
  • the invention provides novel chemical compounds, and the use of these compounds alone or in combination with other antiviral agents for treating HCV infection.
  • Hepatitis C virus (HCV) infection is a major health problem that leads to chronic liver disease, such as cirrhosis and hepatocellular carcinoma, in a substantial number of infected individuals, estimated to be 2-15% of the world's population.
  • chronic liver disease such as cirrhosis and hepatocellular carcinoma
  • According to the World Health Organization there are more than 200 million infected individuals worldwide, with at least 3 to 4 million people being infected each year. Once infected, about 20% of people clear the virus, but the rest can harbor HCV the rest of their lives.
  • Ten to twenty percent of chronically infected individuals eventually develop liver-destroying cirrhosis or cancer.
  • the viral disease is transmitted parenterally by contaminated blood and blood products, contaminated needles, or sexually and vertically from infected mothers or carrier mothers to their offspring.
  • Current treatments for HCV infection which are restricted to immunotherapy with recombinant interferon- ⁇ alone or in combination with the nucleoside analog ribavirin, are of limited clinical benefit.
  • the HCV virion is an enveloped positive-strand RNA virus with a single oligoribonucleotide genomic sequence of about 9600 bases which encodes a polyprotein of about 3,010 amino acids.
  • the protein products of the HCV gene consist of the structural proteins C, El, and E2, and the non-structural proteins NS2, NS3, NS4A and NS4B, and NS5A and NS5B.
  • the nonstructural (NS) proteins are believed to provide the catalytic machinery for viral replication.
  • the NS3 protease releases NS5B, the RNA-dependent RNA polymerase from the polyprotein chain.
  • HCV NS5B polymerase is required for the synthesis of a double-stranded RNA from a single-stranded viral RNA that serves as a template in the replication cycle of HCV. Therefore, NS5B polymerase is considered to be an essential component in the HCV replication complex (K. Ishi, et al, Heptology, 1999, 29: 1227-1235; V. Lohmann, et al., Virology, 1998, 249: 108- 118). Inhibition of HCV NS5B polymerase prevents formation of the double- stranded HCV RNA and therefore constitutes an attractive approach to the development of HCV-specific antiviral therapies.
  • HCV belongs to a much larger family of viruses that share many common features.
  • the Flaviviridae family of viruses comprises at least three distinct genera: pestiviruses, which cause disease in cattle and pigs; flavivruses, which are the primary cause of diseases such as dengue fever and yellow fever; and hepaciviruses, whose sole member is HCV.
  • the flavivirus genus includes more than 68 members separated into groups on the basis of serological relatedness (Calisher et al., J. Gen. Virol, 1993,70,37-43). Clinical symptoms vary and include fever, encephalitis and hemorrhagic fever (Fields Virology, Editors: Fields, B. N., Knipe, D. M., and Howley, P.
  • Flaviviruses of global concern that are associated with human disease include the Dengue Hemorrhagic Fever viruses (DHF), yellow fever virus, shock syndrome and Japanese encephalitis virus (Halstead, S. B., Rev. Infect. Dis., 1984, 6, 251-264; Halstead, S. B., Science, 239:476-481, 1988; Monath, T. P., New Eng. J. Med, 1988, 319, 64 1- 643).
  • DHF Dengue Hemorrhagic Fever viruses
  • Yellow fever virus yellow fever virus
  • shock syndrome and Japanese encephalitis virus
  • the pestivirus genus includes bovine viral diarrhea virus (BVDV), classical swine fever virus (CSFV, also called hog cholera virus) and border disease virus (BDV) of sheep (Moennig, V. et al. Adv. Vir. Res. 1992, 41, 53- 98). Pestivirus infections of domesticated livestock (cattle, pigs and sheep) cause significant economic losses worldwide. BVDV causes mucosal disease in cattle and is of significant economic importance to the livestock industry (Meyers, G. and Thiel, H.J., Advances in Virus Research, 1996, 47, 53-118; Moennig V., et al, Adv. Vir. Res. 1992, 41, 53-98). Human pestiviruses have not been as extensively characterized as the animal pestiviruses. However, serological surveys indicate considerable pestivirus exposure in humans.
  • BVDV bovine viral diarrhea virus
  • CSFV classical swine fever virus
  • BDV border disease virus
  • Pestiviruses and hepaciviruses are closely related virus groups within the Flaviviridae family.
  • Other closely related viruses in this family include the GB virus A, GB virus A-like agents, GB virus-B and GB virus-C (also called hepatitis G virus, HGV).
  • the hepacivirus group (hepatitis C virus; HCV) consists of a number of closely related but genotypically distinguishable viruses that infect humans. There are at least 6 HCV genotypes and more than 50 subtypes.
  • bovine viral diarrhea virus Due to the similarities between pestiviruses and hepaciviruses, combined with the poor ability of hepaciviruses to grow efficiently in cell culture, bovine viral diarrhea virus (BVDV) is often used as a surrogate to study the HCV virus.
  • BVDV bovine viral diarrhea virus
  • RNA viruses possess a single large open reading frame (ORF) encoding all the viral proteins necessary for virus replication. These proteins are expressed as a polyprotein that is co- and post-translationally processed by both cellular and virus-encoded proteinases to yield the mature viral proteins.
  • the viral proteins responsible for the replication of the viral genome RNA are located within approximately the carboxy-terminal. Two- thirds of the ORF are termed nonstructural (NS) proteins.
  • NS nonstructural
  • the mature nonstructural (NS) proteins in sequential order from the amino-terminus of the nonstructural protein coding region to the carboxy-terminus of the ORF, consist of p7, NS2, NS3, NS4A, NS4B, NS5A, and NS5B.
  • the NS proteins of pestiviruses and hepaciviruses share sequence domains that are characteristic of specific protein functions.
  • the NS3 proteins of viruses in both groups possess amino acid sequence motifs characteristic of serine proteinases and of helicases (Gorbalenya et al., Nature, 1988, 333, 22; Bazan and Fletterick Virology , 1989,171,637-639; Gorbalenya et al., Nucleic Acid Res., 1989, 17, 3889-3897).
  • the NS5B proteins of pestiviruses and hepaciviruses have the motifs characteristic of RNA-directed RNA polymerases (Koonin, E. V. and DoIj a, V.V., Crir. Rev. Biochem. Molec. Biol. 1993, 28, 375-430).
  • NS3 serine proteinase is responsible for all proteolytic processing of polyprotein precursors downstream of its position in the ORF (Wiskerchen and Collett, Virology, 1991, 184, 341-350; Bartenschlager et al., J. Virol. 1993, 67, 3835-3844; Eckart et al. Biochem. Biophys. Res. Comm. 1993,192, 399-406; Grakoui et al., J. Virol. 1993, 67, 2832-2843; Grakoui et al., Proc. Natl.
  • NS4A protein acts as a cofactor with the NS3 serine protease (Bartenschlager et al., J. Virol. 1994, 68, 5045-5055; Failla et al., J. Virol. 1994, 68, 3753-3760; Xu et al., J. Virol., 1997, 71:53 12-5322).
  • the NS3 protein of both viruses also functions as a helicase (Kim et al., Biochem. Biophys. Res. Comm., 1995, 215, 160-166; Jin and Peterson, Arch. Biochem. Biophys., 1995, 323, 47-53; Warrener and Collett, J. Virol. 1995, 69, 1720- 1726).
  • the NS5B proteins of pestiviruses and hepaciviruses have the predicted RNA-directed RNA polymerases activity (Behrens et al., EMBO, 1996, 15, 12-22; Lechmann et al., J. Virol, 1997, 71, 8416-8428; Yuan et al., Biochem. Biophys. Res. Comm. 1997, 232, 231-235; Hagedorn, PCT WO 97/12033; Zhong et al, J. Virol., 1998, 72, 9365-9369).
  • RNA-dependent RNA polymerase is absolutely essential for replication of the single-stranded, positive sense, RNA genome and this enzyme has elicited significant interest among medicinal chemists.
  • Inhibitors of HCV NS5B as potential therapies for HCV infection have been reviewed: Tan, S.-L., et al., Nature Rev. Drug Discov., 2002, 1 , 867-881 ; Walker, M.P. et al., Exp. Opin. Investigational Drugs, 2003, 12, 1269-1280; Ni, Z-J., et al., Current Opinion in Drug Discovery and Development, 2004, 7, 446- 459; Beaulieu, P.
  • Nucleoside inhibitors of NS5B polymerase can act either as a non-natural substrate that results in chain termination or as a competitive inhibitor which competes with nucleotide binding to the polymerase.
  • the nucleoside analog must be taken up by the cell and converted in vivo to a triphosphate to compete for the polymerase nucleotide binding site. This conversion to the triphosphate is commonly mediated by cellular kinases which imparts additional structural requirements on a potential nucleoside polymerase inhibitor. Unfortunately, this limits the direct evaluation of nucleosides as inhibitors of HCV replication to cell-based assays capable of in situ phosphorylation.
  • nucleoside phosphoramidate prodrugs have been shown to be precursors of the active nucleoside triphosphate and to inhibit viral replication when administered to viral infected whole cells (McGuigan, C, et al., J. Med.
  • nucleosides are also limiting the utility of nucleosides as viable therapeutic agents. These poor properties can limit the intestinal absorption of an agent and limit uptake into the target tissue or cell.
  • prodrugs of nucleosides have been employed. It has been demonstrated that preparation of nucleoside phosphoramidates improves the systemic absorption of a nucleoside and furthermore, the phosphoramidate moiety of these "pronucleotides" is masked with neutral lipophilic groups to obtain a suitable partition coefficient to optimize uptake and transport into the cell dramatically enhancing the intracellular concentration of the nucleoside monophosphate analog relative to administering the parent nucleoside alone. Enzyme-mediated hydrolysis of the phosphate ester moiety produces a nucleoside monophosphate wherein the rate limiting initial phosphorylation is unnecessary.
  • the present invention is directed toward novel phosphoramidate prodrugs of nucleoside derivatives for the treatment of viral infections in mammals, which is a compound, its stereoisomers, salts (acid or basic addition salts), hydrates, solvates, or crystalline forms thereof, represented by the following structure:
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1 - 6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R r ) 2 , COR 1 - , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-20 alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1- is -OR' or -N(R )
  • R 2 is hydrogen, C I-10 alkyl, R 3a or R 3b and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR 3a R 3b NHR', where n is 2 to 4 and R 1 , R 3a , and R 3b ;
  • R 3a is CH 3 , -CH 2 CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , -CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 - imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH 2 ((4'-OH)-Ph), CH 2 SH, or lower cycloalkyl and R 3b is H, where R 3 is independently hydrogen or alkyl, which
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) p OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN,
  • the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
  • Z is N or CR 12 ;
  • R 7 , R 8 ,R 9 , R 10 , and R n are independently H, F, Cl, Br, I, OH, OR', SH,
  • R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C 1-20 alkyl, an optionally substituted C 1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C 2 -C 6 , an optionally substituted lower alkenyl of C 2 -C 6 , or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C 1-20 alkyl), C(O)(C 1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
  • R 12 is H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH 2 , NHR',
  • a or “an” entity refers to one or more of that entity; for example, a compound refers to one or more compounds or at least one compound.
  • a compound refers to one or more compounds or at least one compound.
  • the terms “a” (or “an”), “one or more”, and “at least one” can be used interchangeably herein.
  • both R's can be carbon, both R's can be nitrogen, or one R' can be carbon and the other nitrogen.
  • alkenyl refers to an unsubstituted hydrocarbon chain radical having from 2 to 10 carbon atoms having one or two olefinic double bonds, preferably one olefinic double bond.
  • C 2-N alkenyl refers to an alkenyl comprising 2 to N carbon atoms, where N is an integer having the following values: 3, 4, 5, 6, 7, 8, 9, or 10.
  • C 2-10 alkenyl refers to an alkenyl comprising 2 to 10 carbon atoms.
  • C 2-4 alkenyl refers to an alkenyl comprising 2 to 4 carbon atoms.
  • halogenated alkenyl refers to an alkenyl comprising at least one of F, Cl, Br, and I.
  • alkyl refers to an unbranched or branched chain, saturated, monovalent hydrocarbon residue containing 1 to 30 carbon atoms.
  • C 1- M alkyl refers to an alkyl comprising 1 to M carbon atoms, where M is an integer having the following values: 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30.
  • C 1-4 alkyl refers to an alkyl containing 1 to 4 carbon atoms.
  • lower alkyl denotes a straight or branched chain hydrocarbon residue comprising 1 to 6 carbon atoms.
  • C 1-20 alkyl refers to an alkyl comprising 1 to 20 carbon atoms.
  • C 1 - K ) alkyl refers to an alkyl comprising 1 to 10 carbons.
  • alkyl groups include, but are not limited to, lower alkyl groups include methyl, ethyl, propyl, /-propyl, «-butyl, /-butyl, r-butyl or pentyl, isopentyl, neopentyl, hexyl, heptyl, and octyl.
  • the term (ar)alkyl or (heteroaryl)alkyl indicate the alkyl group is optionally substituted by an aryl or a heteroaryl group respectively.
  • cycloalkyl refers to an unsubstituted or substituted carbocycle, in which the carbocycle contains 3 to 10 carbon atoms; preferably 3 to 8 carbon atoms; more preferably 3 to 6 carbon atoms (i.e., lower cycloalkyls).
  • Examples of cycloalkyl groups include, but are not limited to, cyclopropyl, 2- methyl-cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
  • cycloalkyl alkyl refers to an additionally unsubstituted or substituted alkyl substituted by a lower cycloalkyl.
  • cycloalkyl alkyls include, but are not limited to, any one of methyl, ethyl, propyl, i-propyl, n-butyl, i-butyl, t-butyl or pentyl, isopentyl, neopentyl, hexyl, heptyl, and octyl that is substituted with cyclopropyl, 2-methyl-cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
  • cycloheteroalkyl refers to an unsubstituted or substituted heterocycle, in which the heterocycle contains 2 to 9 carbon atoms; preferably 2 to 7 carbon atoms; more preferably 2 to 5 carbon atoms.
  • Examples of cycloheteroalkyls include, but are not limited to, aziridin-2-yl, N-C 1 - 3 -alkyl- aziridin-2-yl, azetidinyl, N-C 1 .
  • N-C 1-3 - alkyl-cycloheteroalkyls include, but are not limited to, N-methyl-aziridin-2-yl, N-methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-2-yl, N-methyl-piperidin-3-yl, and N-methyl-piperidin-4-yl.
  • R 4 the point of attachment between the cycloheteroalkyl ring carbon and the oxygen occurs at any one of m'
  • heterocycle refers to an unsubstituted or substituted heterocycle containing carbon, hydrogen, and at least one of N, O, and S, where the C and N can be trivalent or tetravalent, i.e., sp 2 - or sp 3 -hybridized.
  • heterocycles include, but are not limited to, aziridine, azetidine, pyrrolidine, piperidine, imidazole, oxazole, piperazine, etc.
  • piperazine as related to R 10 for NR' 2 , the corresponding opposite nitrogen atom of the piperazinyl is substituted by a lower alkyl represented by the following structure:
  • the opposite nitrogen of the piperazinyl is substituted by a methyl group.
  • halogenated alkyl refers to an unbranched or branched chain alkyl comprising at least one of F, Cl, Br, and I.
  • C 1-M haloalkyl refers to an alkyl comprising 1 to M carbon atoms that comprises at least one of F, Cl, Br, and I, where M is an integer having the following values:
  • C r3 haloalkyl refers to a haloalkyl comprising 1 to 3 carbons and at least one of F, Cl, Br, and I.
  • halogenated lower alkyl refers to a haloalkyl comprising 1 to 3 carbons and at least one of F, Cl, Br, and I.
  • lower haloalkyl refers to a haloalkyl comprising 1 to 6 carbon atoms and at least one of F, Cl, Br, and I. Examples include, but are not limited to, fluoromethyl, chloromethyl, bromomethyl, iodomethyl, difluoromethyl, dichloromethyl, dibromomethyl, diiodomethyl, trifluoromethyl, trichloromethyl, tribromomethyl, triiodomethyl, 1 -fluoroethyl, 1-chloroethyl, 1-bromoethyl, 1- iodoethyl, 2-fluoroethyl, 2-chloroethyl, 2-bromoethyl, 2-iodoethyl, 2,2- difluoroethyl, 2,2-dichloroethyl, 2,2-dibromomethyl, 2-2-diiodomethyl, 3- fluoropropyl, 3-ch
  • alkynyl refers to an unbranched or branched hydrocarbon chain radical having from 2 to 10 carbon atoms, preferably 2 to 5 carbon atoms, and having one triple bond.
  • C 2-N alkynyl refers to an alkynyl comprising 2 to N carbon atoms, where N is an integer having the following values: 3, 4, 5, 6, 7, 8, 9, or 10.
  • C C 2-4 alkynyl refers to an alkynyl comprising 2 to 4 carbon atoms.
  • C 2-10 alkynyl refers to an alkynyl comprising 2 to 10 carbons. Examples include, but are limited to, ethynyl, 1- propynyl, 2-propynyl, 1-butynyl, 2-butynyl or 3-butynyl.
  • halogenated alkynyl refers to an unbranched or branched hydrocarbon chain radical having from 2 to 10 carbon atoms, preferably 2 to 5 carbon atoms, and having one triple bond and at least one of F, Cl, Br, and I.
  • cycloalkyl refers to a saturated carbocyclic ring comprising 3 to 8 carbon atoms, i.e. cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl or cyclooctyl.
  • C 3-7 cycloalkyl refers to a cycloalkyl comprising 3 to 7 carbons in the carbocyclic ring.
  • alkoxy refers to an -O-alkyl group or an -O-cycloalkyl group, wherein alkyl and cycloalkyl are as defined above.
  • -O-alkyl groups include, but are not limited to, methoxy, ethoxy, n-propyloxy, i- propyloxy, n-butyloxy, i-butyloxy, t-butyloxy.
  • “Lower alkoxy” as used herein denotes an alkoxy group with a "lower alkyl” group as previously defined.
  • C 1-10 alkoxy refers to an-O-alkyl wherein alkyl is C 1 .io.
  • Examples of -O-cycloalkyl groups include, but are not limited to, -O-c-propyl, -O-c-butyl, -O-c-pentyl, and -O-c-hexyl.
  • halogenated alkoxy refers to an -O-alkyl group in which the alkyl group comprises at least one of F, Cl, Br, and I.
  • halogenated lower alkoxy refers to an -O-(lower alkyl) group in which the lower alkyl group comprises at least one of F, Cl, Br, and I.
  • amino acid includes naturally occurring and synthetic ⁇ , ⁇ ⁇ or ⁇ amino acids, and includes but is not limited to, amino acids found in proteins, i.e. glycine, alanine, valine, leucine, isoleucine, methionine, phenylalanine, tryptophan, proline, serine, threonine, cysteine, tyrosine, asparagine, glutamine, aspartate, glutamate, lysine, arginine and histidine.
  • the amino acid is in the L-configuration.
  • the amino acid can be a derivative of alanyl, valinyl, leucinyl, isoleucinyl, prolinyl, phenylalaninyl, tryptophanyl, methioninyl, glycinyl, serinyl, threoninyl, cysteinyl, tyrosinyl, asparaginyl, glutaminyl, aspartoyl, glutaroyl, lysinyl, argininyl, histidinyl, ⁇ -alanyl, ⁇ -valinyl, ⁇ -leucinyl, ⁇ -isoleucinyl, ⁇ -prolinyl, ⁇ - phenylalaninyl, ⁇ -tryptophanyl, ⁇ -methioninyl, ⁇ -glycinyl, ⁇ -serinyl, ⁇ - threoninyl, ⁇ -cystein
  • amino acid When the term amino acid is used, it is considered to be a specific and independent disclosure of each of the esters of ⁇ , ⁇ ⁇ or ⁇ glycine, alanine, valine, leucine, isoleucine, methionine, phenylalanine, tryptophan, proline, serine, threonine, cysteine, tyrosine, asparagine, glutamine, aspartate, glutamate, lysine, arginine and histidine in the D and L-configurations.
  • aminoacyl includes N,N-unsubstituted, N,N-monosubstituted, and N,N-disubstituted derivatives of naturally occurring and synthetic ⁇ , ⁇ ⁇ or ⁇ amino acyls, where the amino acyls are derived from amino acids.
  • the amino- nitrogen can be substituted or unsubstituted. When the amino-nitrogen is substituted, the nitrogen is either mono- or di-substituted, where the substituent bound to the amino-nitrogen is a lower alkyl or an alkaryl.
  • the expression "O(aminoacyl)" is used. It is understood that the C3' carbon of the ribose is bound to the oxygen "O", which is then bound to the carbonyl carbon of the aminoacyl.
  • alkylamino or arylamino refer to an amino group that has one or two alkyl or aryl substituents, respectively.
  • protected refers to a group that is added to an oxygen, nitrogen, or phosphorus atom to prevent its further reaction or for other purposes. A wide variety of oxygen and nitrogen protecting groups are known to those skilled in the art of organic synthesis.
  • Non- limiting examples include: C(O)-alkyl, C(O)Ph, C(O)aryl, CH 3 , CH 2 -alkyl, CH 2 - alkenyl, CH 2 Ph, CH 2 -aryl, CH 2 O-alkyl, CH 2 O-aryl, SO 2 -alkyl, SO 2 -aryl, tert- butyldimethylsilyl, tert-butyldiphenylsilyl, and 1,3-(I 9 1,3,3- tetraisopropyldisiloxanylidene).
  • aryl refers to substituted or unsubstituted phenyl (Ph), biphenyl, or naphthyl, preferably the term aryl refers to substituted or unsubstituted phenyl.
  • the aryl group can be substituted with one or more moieties selected from among hydroxyl, F, Cl, Br, I, amino, alkylamino, arylamino, alkoxy, aryloxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, and phosphonate, either unprotected, or protected as necessary, as known to those skilled in the art, for example, as taught in T. W. Greene and P.G. M. Wuts, "Protective Groups in Organic Synthesis," 3rd ed., John Wiley & Sons, 1999.
  • alkaryl or “alkylaryl” refer to an alkyl group with an aryl substituent, such as benzyl.
  • aryl or “arylalkyl” refer to an aryl group with an alkyl substituent.
  • di(lower alkyl)amino-lower alkyl refers to a lower alkyl substituted by an amino group that is itself substituted by two lower alkyl groups. Examples include, but are not limited to, (CH 3 ) 2 NCH 2 , (CH 3 ) 2 NCH 2 CH 2 , (CHa) 2 NCH 2 CH 2 CH 2 , etc.
  • the examples above show lower alkyls substituted at the terminus carbon atom with an N,N-dimethyl-amino substituent. These are intended as examples only and are not intended to limit the meaning of the term "di(lower alkyl)amino-lower alkyl" so as to require the same.
  • the lower alkyl chain can be substituted with an N,N-di(lower alkyl)-amino at any point along the chain, e.g., CH 3 CH(N-(lower alkyl) 2 )CH 2 CH 2 .
  • halo includes chloro, bromo, iodo and fluoro.
  • acyl refers to a substituent containing a carbonyl moiety and a non-carbonyl moiety. The carbonyl moiety contains a double-bond between the carbonyl carbon and a heteroatom, where the heteroatom is selected from among O, N and S. When the heteroatom is N, the N is substituted by a lower alkyl.
  • the non-carbonyl moiety is selected from straight, branched, and cyclic alkyl, which includes, but is not limited to, a straight, branched, or cyclic C 1-20 alkyl, C 1-10 alkyl, or lower alkyl; alkoxyalkyl, including methoxymethyl; aralkyl, including benzyl; aryloxyalkyl, such as phenoxymethyl; or aryl, including phenyl optionally substituted with halogen (F, Cl, Br, I), hydroxyl, C 1 to C 4 alkyl, or C 1 to C 4 alkoxy, sulfonate esters, such as alkyl or aralkyl sulphonyl, including methanesulfonyl, the mono, di or triphosphate ester, trityl or monomethoxytrityl, substituted benzyl, trialkylsilyl (e.g. dimethyl-t-butylsilyl) or dipheny
  • lower acyl refers to an acyl group in which the non-carbonyl moiety is lower alkyl.
  • purine or "pyrimidine” base includes, but is not limited to, adenine, N 6 -alkylpurines, N 6 -acylpurines (wherein acyl is C(O)(alkyl, aryl, alkylaryl, or arylalkyl), N 6 -benzylpurine, N 6 -halopurine, N 6 -vinylpurine, N 6 - acetylenic purine, N 6 -acyl purine, N 6 -hydroxyalkyl purine, N 6 - allcylaminopurine, N 6 -thioallcyl purine, N 2 -alkylpurines, N 2 -alkyl-6-thiopurines, thymine, cytosine, 5-fluorocytosine, 5-methylcytosine, 6-azapyrimidine, including 6-azacytosine, 2- and/or 4-mercaptopyrmidine, uracil, 5-halouracil, including 5-fluorouraci
  • Purine bases include, but are not limited to, guanine, adenine, hypoxanthine, 2,6- diaminopurine, and 6-chloropurine. Functional oxygen and nitrogen groups on the base can be protected as necessary or desired. Suitable protecting groups are well known to those skilled in the art, and include trimethylsilyl, dimethylhexylsilyl, t-butyldimethylsilyl, and r-butyldiphenylsilyl, trityl, alkyl groups, and acyl groups such as acetyl and propionyl, methanesulfonyl, and p- toluenesulfonyl.
  • P* means that the phosphorous atom is chiral and that it has a corresponding Cahn-Ingold-Prelog designation of "R” or "S” which have their accepted plain meanings. It is contemplated that compounds of the formula I are racemic because the chirality at phosphorous. Applicants contemplate use of the racemate and/or the resolved enantiomers. In some instances, an asterisk does not appear next to the phosphoroamidate phosphorous atom. In these instances, it is understood that the phosphorous atom is chiral and that one of ordinary skill understands this to be so unless the substituents bound to the phosphorous exclude the possibility of chirality at phosphorous, such as in P(O)Cl 3 .
  • An aspect of the invention is directed to a compound, its salts, hydrates, solvates, crystalline forms, and the like represented by formula I:
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R r ) 2 , COR 1 - , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, Q -20 alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1 " is -OR 1 or -N(R r)
  • R 2 is hydrogen, C 1-10 alkyl, R 3a or R 3b and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms,
  • R 3a is CH 3 , -CH 2 CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , -CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 - imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), O(C M o acyl), O(C 1-4 alkyl), O(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2-4 alkynyl), S(C 2-4 alkenyl), SO(C 1-4 acyl), SO(C 1-4 alkyl), SO(C 2-4 alkynyl), SO(C 2-4 alkenyl),
  • the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
  • Z is N or CR 12 ;
  • R 7 , R 8 ,R 9 , R 10 , and R n are independently H, F, Cl, Br, I, OH, OR', SH,
  • R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C 1-20 alkyl, an optionally substituted C 1 .io alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C 2 -C 6 , an optionally substituted lower alkenyl of C 2 -C 6 , or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C 1-20 alkyl), C(O)(C 1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
  • R 12 is H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH 2 , NHR',
  • a first embodiment of the invention is directed to a compound represented by formula 1-1 :
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R r ) 2 , COR 1 - , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-2 O alkyl, C 1-10 alkyl, or C !-6 alkyl, R 1" is -OR or -N(R 1-6
  • R 2 is hydrogen, C 1-10 alkyl, R 3a or R 3b and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR 32 R 313 NHR 1 , where n is 2 to 4 and R 1 , R 3a , and R 3b ;
  • R 3a and R 3b are (i) independently selected from hydrogen, C 1-10 alkyl, cycloalkyl, -(CH 2 ) C (NR 3' ) 2 , C, -6 hydroxyalkyl, -CH 2 SH, -(CH 2 ) 2 S(O) d Me, -
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), O(C 1-]0 acyl), O(C 1-4 alkyl), O(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2 ⁇ alkynyl), S(C 2-4 alkenyl), SO(C 1-4 acyl), SO(C 1-4 alkyl), SO(C 2-4 alkynyl), SO(C 2-4 alkenyl), SO 2 (C 1-4 acyl), SO 2 (C
  • R 7 , R 8 ,R 9 are independently H, F, Cl, Br, I, OH, OR', SH, SR',
  • a first aspect of the first embodiment is directed to a compound represented by formula 1-1
  • R 1 is hydrogen, n-alkyl or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a and R 3b are independently (i) R 3a is hydrogen and R 3b and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R 3b is hydrogen and R 3a and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R 3 is independently hydrogen or C 1-6 alkyl and R 3 " is -OR' or -N(R 3' ) 2 ); (vi) R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, - CH 2 CH 2 SCH 3 , CH 2
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, CN, CH 3 , vinyl, OCH 3 , OCH 2 CH 3 , CH 2 OH, CH 2 (halo), such as CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R 6 is H, R 5 cannot be N 3 ;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, vinyl, N 3 , CN, Cl, Br, F, I, O(C 1-6 acyl),
  • R 7 , R 8 ,R 9 are independently H, F, Cl, Br, I, OH, OR', SH, SR 1 , NH 2 , NHR', NR' 2 , lower alkyl, halogenated (F, Cl, Br, I) lower alkyl, lower alkenyl of C 2 -C 6 , CO 2 H, CO 2 R', CONH 2 , CONHR', CONR' 2 , wherein R' is a C- 2 o alkyl; a C 1-20 cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl.
  • a second aspect of the first embodiment is directed to a compound represented by formula 1-1
  • R 1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a C 1-3 alkyl, a C 1-3 alkoxy, F, Cl, Br, I, nitro, cyano, and a C 1-3 haloalkyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a and R 3b are independently (i) R 3a is hydrogen and R 3b and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R 3b is hydrogen and R 3a and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R 3 is independently hydrogen or C 1-6 alkyl and R 3- is -OR' or -N(R 3' ) 2 ); (vi) R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -
  • R 3a is CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3- yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, r Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, di(lower alkyl)amino-lower alkyl, or aminoacyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 (halo), such as CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R 6 is H, R 5 cannot be N 3 ;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 , NH 2 , NHCH 3 , NH(vinyl), NH(acetyl), NH(C(O)CH 3 ), N(CH 3 ) 2 , N(C(O)CH 3 ) 2 , or O(aminoacyl);
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 ; and G) R 9 is selected from among OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , OC(O)(C 1-20 alkyl), which include but are not limited to OC(O)(CH 2 ) s CH 3 , NHC(O)(C 1-20 alkyl), which include but are not limited to NHC(O)(CH 2 ) S CH 3 , and N(C(O)(CH 2 ) S CH 3 ) 2 ,
  • a third aspect of the first embodiment is directed to a compound represented by formula 1-1
  • R 1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH 3 , OCH 3 , F, Cl, Br, I, nitro, cyano, and a CH 3-q X q , where X is F, Cl, Br, or I, and q is 1-3;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, lower haloalkyl, di(lower alkyl)amino-lower alkyl, or aminoacyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 (halo), such as CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R 6 is H, R 5 cannot be N 3 ;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ,
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 , wherein R' is a C 1-20 alkyl; a C 1-20 cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl'; and
  • R 9 is selected from among OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , OC(O)(C 1-20 alkyl), which include but are not limited to OC(O)(CH 2 ) S CH 3 , NHC(O)(C 1-20 alkyl), which include but are not limited to NHC(O)(CH 2 ) S CH 3 , and N(C(O)(CH 2 ) S CH 3 ) 2 , which include but is not limited to N(C(O)(CH 2 ) S CH 3 ) 2 , where s is an integer selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
  • a fourth aspect of the first embodiment is directed to a compound represented by formula 1-2
  • R 1 is hydrogen, methyl, ethyl, w-propyl, /-propyl, or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH 3 , OCH 3 , F, Cl, Br, I, nitro, cyano, and a CH3 -q X q , where X is F, Cl, Br, or I, and q is 1-3;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 )2, CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H,
  • R 4 is hydrogen, C 1 _io alkyl, C 1- ]O alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C ⁇ io haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R 6 is H, R 5 cannot be N 3 ;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 , NH 2 , NHCH 3 , NH(vinyl), NH(acetyl), NH(C(O)CH 3 ), N(CH 3 ) 2 , N(C(O)CH 3 ) 2 , or O(aminoacy 1) ;
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 , wherein R' is a C 1-20 alkyl; a C 1-20 cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl; and
  • R 9 is selected from among OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 ,
  • a fifth aspect of the first embodiment is directed to a compound represented by formula 1-2
  • R 1 is hydrogen, methyl, ethyl, n-propyl, i-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , - CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 -imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH 2 ((4'- OH)-Ph), CH 2 SH, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, lower haloalkyl, di(lower alkyl)amino-lower alkyl, or aminoacyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F,
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 , or O(aminoacyl);
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 , wherein R 1 is a C 1-2 O alkyl; a C 1-20 cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl; and
  • R 9 is selected from among OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 ,
  • a sixth aspect of the first embodiment is directed to a compound represented by formula 1-2
  • R ! is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, OMe, CN, CH 2 F, F, Cl, Br, or I;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, or N 3 , OCH 3 , OC(O)CH 3 , or O(aminoacyl);
  • R 7 and R 8 are independently H, F, Br, SCH 3 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 ; and
  • O) R 9 is selected from among OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , OC(O)(C 1-20 alkyl), which include but are not limited to
  • NHC(O)(C 1-20 alkyl which include but are not limited to NHC(O)(CH 2 ) s CH 3
  • N(C(O)(CH 2 ) S CH 3 ) 2 which include but is not limited to N(C(O)(CH 2 ) S CH 3 ) 2 , where s is an integer selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
  • a seventh aspect of the first embodiment is directed to a compound represented by formula 1-2
  • R ! is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, r Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, or N 3 ;
  • Y is OH, OCH 3 , OC(O)CH 3 , or O(aminoacyl);
  • R 7 and R 8 are independently H, F, Br, SCH 3 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 ; and
  • R 9 is selected from among OH, OCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , OC(O)(C 1-20 alkyl), which include but are not limited to OC(O)(CH 2 ) S CH 3 , NHC(O)(C 1-20 alkyl), which include but are not limited to NHC(O)(CH 2 ) S CH 3 , and N(C(O)(CH 2 ) S CH 3 ) 2 , which include but is not limited to
  • N(C(O)(CH 2 ) S CH 3 ) 2 where s is an integer selected from among 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
  • An eighth aspect of the first embodiment is directed to a compound represented by formula 1-2
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, or N 3 ;
  • Y is OH, OCH 3 , OC(O)CH 3 , or O(aminoacyl);
  • R 7 and R 8 are independently H, F, Br, SCH 3 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 ;
  • R 9 is selected from among OH, OCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 ,
  • OC(O)(C 1-20 alkyl which include but are not limited to OC(O)(CH 2 ) S CH 3
  • NHC(O)(C 1-20 alkyl) which include but are not limited to NHC(O)(CH 2 ) S CH 3
  • N(C(O)(CH 2 ) S CH 3 ) 2 which include but is not limited to N(C(O)(CH 2 ) S CH 3 ) 2 , where s is an integer selected from among 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
  • a second embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula b above, wherein R 1 , R 2 , R 3a , R 3b , R 4 , R 5 , R 6 , X, Y, R 7 , and R 8 are defined in the Summary of the Invention section above.
  • a first aspect of the second embodiment is directed to a compound represented by formula 1-3
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1 -6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C) -6 alkyl, -SO 2 N(R r ) 2 , COR !- , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-20 alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1- is -OR' or -N(R')
  • R 2 is hydrogen or CH 3 ;
  • R 4 is hydrogen, C 1-1 O alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN,
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OR', SH, SR',
  • the second aspect of the second embodiment is directed to a compound represented by formula 1-3
  • R 1 is hydrogen, n-alkyl or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1 _ 6 haloalkyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a and R 3b are independently (i) R 3a is hydrogen and R 3b and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R 3b is hydrogen and R 3a and R 2 together are (CH 2 ),, so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R 3 is independently hydrogen or C 1-6 alkyl and R 3- is -OR' or -N(R 3' ) 2 ); (vi) R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, - CH 2 CH 2 SCH 3 , CH 2 CO 2
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, Q-, 0 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, CN, CH 3 , vinyl, OCH 3 , OCH 2 CH 3 , CH 2 OH, CH 2 (halo), such as CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, vinyl, N 3 , CN, Cl, Br, F, I, O(C 1-6 acyl),
  • NH 2 NH(C 1-4 alkyl), NH(C 2-4 alkenyl), NH(C 2-4 alkynyl), NH(C 1-4 acyl), N(C 1-4 alkyl) 2 , N(C 1-18 acyl) 2 , wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N 3 , CN, one to three halogen (Cl, Br, F, I), NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), 0(C 1-4 acyl), 0(C 1-4 alkyl), 0(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 acyl), S(C 1-4
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OR', SH, SR', NH 2 , NHR', NR' 2 , lower alkyl, halogenated (F, Cl, Br, I) lower alkyl, lower alkenyl of C 2 -C 6 , CO 2 H, CO 2 R', CONH 2 , CONHR 1 , C0NR' 2 , wherein R' is a Q- 20 alkyl; a C 1-20 cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl.
  • the third aspect of the second embodiment is directed to a compound represented by formula 1-3
  • R 1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a C 1-3 alkyl, a C 1-3 alkoxy, F, Cl, Br, I, nitro, cyano, and a C 1-3 haloalkyl;
  • R 2 is hydrogen, CH 3 , R 3a or R 3b and R 2 together are (CH 2 ) 3 so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR 33 R 313 NHR 1 , where n is 2 to 4 and R 1 , R 3a , and R 3b are as defined herein;
  • R 3a and R 3b are independently (i) R 3a is hydrogen and R 3b and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R 3b is hydrogen and R 3a and R 2 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R 3 is independently hydrogen or C 1-6 alkyl and R 3- is -OR 1 or -N(R 3' ) 2 ); (vi) R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, - CH 2 CH 2 SCH 3 , CH 2 CO
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, t Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 (halo), such as CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , halogen, NH 2 , or N 3
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 , NH 2 , NHCH 3 , NH(vinyl), NH(acetyl), NH(C(O)CH 3 ), N(CH 3 ) 2 , N(C(O)CH 3 ) 2 ;
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 .
  • the fourth aspect of the second embodiment is directed to a compound represented by formula 1-3
  • R 1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH 3 , OCH 3 ,
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , -
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 (halo), such as CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 , NH 2 , NHCH 3 , NH(vinyl), NH(acetyl), NH(C(O)CH 3 ), N(CH 3 ) 2 , N(C(O)CH 3 ) 2 ;
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OCH 3 , SH,
  • SCH 3 NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 , wherein R' is a C 1-20 alkyl; a C 1-20 cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl.
  • the fifth aspect of the second embodiment is directed to a compound represented by formula 1-4
  • R is hydrogen, methyl, ethyl, n-propyl, /-propyl, or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH 3 , OCH 3 , F, Cl, Br, I, nitro, cyano, and a CH 3-q X q , where X is F, Cl, Br, or I, and q is 1-3;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , - CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 -imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH 2 ((4'- OH)-Ph), CH 2 SH, or lower cycloalkyl or R 3a is CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, N 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , halogen, including F, Cl, Br, or I;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 , NH 2 , NHCH 3 , NH(vinyl), NH(acetyl), NH(C(O)CH 3 ), N(CH 3 ) 2 , N(C(O)CH 3 ) 2 ;
  • R 7 and R 8 are independently H, F, Cl, Br, 1, OH, OCH 3 , SH, SCH 3 , NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 , wherein R' is a C 1-20 alkyl; a C 1-2 O cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl,
  • the sixth aspect of the second embodiment is directed to a compound represented by formula 1-4 wherein
  • R 1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2 , N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ;
  • R 7 and R 8 are independently H, F, Cl, Br, I, OH, OCH 3 , SH,
  • SCH 3 NH 2 , NHCH 3 , N(CH 3 ) 2 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 H, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 , wherein R' is a C 1-20 alkyl; a C 1-20 cycloalkyl; a C 2 -C 6 alkenyl, a C 2 -C 6 alkynyl.
  • the seventh aspect of the second embodiment is directed to a compound represented by formula 1-4
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, OMe, CN, CH 2 F, F, Cl, Br, or I;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH3, or OC(O)CH 3 ;
  • R 7 and R 8 are independently H, F, Br, SCH 3 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 ;
  • the eighth aspect of the second embodiment is directed to a compound represented by formula 1-4
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2, OCH 3 , or OC(O)CH 3 ;
  • R 7 and R 8 are independently H, F, Br, SCH 3 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 .
  • the ninth aspect of the second embodiment is directed to a compound represented by formula 1-4
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, or N 3 ;
  • Y is OH, OCH 3 , or OC(O)CH 3 ;
  • R 7 and R 8 are independently H, F, Br, SCH 3 , CH 3 , CH 3-q X q , where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO 2 CH 3 , CONH 2 , CONHCH 3 , or CON(CH 3 ) 2 .
  • a third embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula c above, wherein R 1 , R 2 , R 3a , R 3b , R 4 , R 5 , R 6 , X, Y, Z, R 10 , R 11 , and R 12 are defined in the Summary of the Invention section above; with the proviso that R 11 is not H.
  • a first aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R r ) 2 , COR 1- , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-20 alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1- is -OR' or -N(R r ) 2
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), O(C 1-!0 acyl), 0(C 1-4 alkyl), 0(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2-4 alkynyl), S(C 2-4 alkenyl), SO(C 1-4 acyl), SO(C 1-4 alkyl), SO(C 2-4 alkynyl), SO(C 2-4 alkenyl),
  • R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C 1-20 alkyl, an optionally substituted C 1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C 2 -C 6 , an optionally substituted lower alkenyl of C 2 -C 6 , or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C 1-20 alkyl), C(O)(C 1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
  • (j) Z is N or CR 12 ;
  • a second aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H.
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • a third aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, ethyl, n-propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, ! Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I; with the proviso that X is OH,
  • R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH 3 , or OC(O)CH 3 ;
  • R 10 and R 1 x are independently H, F, Br, I, OH, OR 1 , NH 2 , NHR',
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • a fourth aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, ethyl, rc-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • a fifth aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • (j) Z is N or CR 12 ;
  • a sixth aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, ethyl, w-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CHa) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , - CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 -imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH 2 ((4'- OH)-Ph), CH 2 SH, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H.
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2 , N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ;
  • R 10 is NH 2 and R 11 is H, F, Br, I, OH, OR', NH 2 , NHR', NR 2 ,
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • a seventh aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl -piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I; with the proviso that X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • An eighth aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • a ninth aspect of the third embodiment is directed to a compound represented by formula 1-5
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, r Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, or N-methyl-pyrrolidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • a tenth aspect of the third embodiment is directed to a compound represented by formula 1-6
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R r ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R r ) 2 , COR 1- , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-20 alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1 - is -OR or -N(R r r
  • R 2 is hydrogen or CH 3 ;
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), 0(C 1-10 acyl), 0(C 1-4 alkyl), 0(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2-4 alkynyl), S(C 2-4 alkenyl), SO(C 1-4 acyl), SO(C 1-4 alkyl), SO(C
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • (j) Z is N or CR 12 ;
  • An eleventh aspect of the third embodiment is directed to a compound represented by formula 1-6
  • R 1 is hydrogen, methyl, ethyl, w-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , - CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 -imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH 2 ((4'- OH)-Ph), CH 2 SH, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-raethyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2 , N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ;
  • R 10 and R 1 ' are independently H, F, Br, I, OH, OR', NH 2 , NHR',
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • a twelvth aspect of the third embodiment is directed to a compound represented by formula 1-6
  • R 1 is hydrogen, methyl, ethyl, r ⁇ -propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, r Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and Q) Z is N or CR 12 ; and
  • a thirteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • G) Z is N or CR 12 ;
  • a fourteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F,
  • R 5 cannot be H
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • (j) Z is N or CR 12 ;
  • a fifteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , Q -6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R 1' ) 2 , COR 1" , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-2 O alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1- is -OR or -N(R r )
  • R 2 is hydrogen or CH 3 ;
  • R 4 is hydrogen, C 1-10 alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C 1-10 haloalkyl, C 3 _io cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), 0(C 1-10 acyl), 0(C 1-4 alkyl), 0(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2-4 alkynyl), S(C 2-4 alkenyl), SO(C 1-4 acyl), SO(C 1-4 alkyl), SO(C 2-4 alkynyl), SO(C 2-4 alkenyl), SO 2 (C 1-4 acyl), SO 2 (C
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • (j) Z is N or CR 12 ;
  • An sixteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , - CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 -imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH 2 ((4'- OH)-Ph), CH 2 SH, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F,
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2 , N 3 , CN, Cl, Br, F, I, OC(O)CH 3 ,
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • a seventeenth aspect of the third embodiment is directed to a compound represented by formula 1-6 wherein
  • R 1 is hydrogen, methyl, ethyl, rc-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • An eighteenth aspect of the third embodiment is directed to a compound represented by formula 1-6 wherein
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • (j) Z is N or CR 12 ;
  • a ninteenth aspect of the third embodiment is directed to a compound represented by formula 1-6 wherein
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • (j) Z is N or CR 12 ;
  • a fourth embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula c above, where R 11 is H and R 2 , R 3a , R 3b , R 4 , R 5 , R 6 , X, and Y are defined in the Summary of the Invention section above.
  • a first aspect of the fourth embodiment is directed to a compound represented by formula 1-7
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1 -6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R r ) 2 , COR 1- , and -SO 2 C L6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-20 alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1- is -OR' or -N(R r )
  • R 2 is hydrogen or CH 3 ;
  • R 3a is CH 3 , -CH 2 CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , -CH 2 CH 2 CH 2 NHC(NH)NH 2 , CH 2 - imidazol-4-yl, CH 2 OH, CH(OH)CH 3 , CH 2 ((4'-OH)-Ph), CH 2 SH, or lower cycloalkyl and R 3b is H, where R 3 is independently hydrogen or alkyl, which
  • R 4 is hydrogen, C 1-1 O alkyl, C 1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C 1-10 haloalkyl, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH),
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 14 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), O(C 1-]0 acyl), 0(C 1-4 alkyl), 0(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2-4 alkynyl), S(C 2-4 alkenyl), SO(C 14 acyl), SO(C 1-4 alkyl), SO(C 14 acyl
  • R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C 1-20 alkyl, an optionally substituted C 1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C 2 -C 6 , an optionally substituted lower alkenyl of C 2 -C 6 , or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C 1-20 alkyl), C(O)(C 1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
  • (j) Z is N or CR 12 ; and R 12 is H, halogen (including F, Cl, Br, I), OH, OR', SH, SR 1 , NH 2 , NHR', NR 2 , NO 2 lower alkyl of C 1 -C 6 , halogenated (F, Cl, Br, I) lower alkyl of C 1 -C 6 , lower alkenyl of C 2 -C 6 , halogenated (F, Cl, Br, I) lower alkenyl of C 2 -C 6 , lower alkynyl of C 2 -C 6 , halogenated (F, Cl, Br, I) lower alkynyl of C 2 -C 6 , lower alkoxy of C 1 -C 6 , halogenated (F, Cl, Br, I) lower alkoxy of C 1 -C 6 , CO 2 H, CO 2 R',
  • a second aspect of the fourth embodiment is directed to a compound represented by formula 1-7
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H.
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , halogen, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R 1 comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • a third aspect of the third embodiment is directed to a compound represented by formula 1-7
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I; with the proviso that X is OH,
  • R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • a fourth aspect of the fourth embodiment is directed to a compound represented by formula 1-7
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di ⁇ ower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F,
  • R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R 1 comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • Q) Z is N or CR 12 ;
  • a fifth aspect of the fourth embodiment is directed to a compound represented by formula 1-7
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • CO R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • (j) Z is N or CR 12 ;
  • a sixth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
  • R 1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1 -6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R !' ) 2 , COR 1 ", and -SO 2 C 1-6 alkyl; (R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-2 O alkyl, Q.io alkyl, or C 1-6 alkyl, R ! - is -OR' or
  • R 2 is hydrogen or CH 3 ;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), OC 1-10 haloalkyl, O(aminoacyl), 0(C 1-10 acyl), 0(C 1-4 alkyl), 0(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2-4 alkynyl), S(C 2-4 alkenyl), SO(C 1-4 acyl), SO(C 1-4 alkyl), SO(C 2-4 alkynyl), SO(C 2-4 alkenyl), SO 2 (C 1-4 alkyl), SO 2 (C 1-4 alkyl), SO 2 (C 1-4 alky
  • R 10 is H, F, Br, I, OH, OR', NH 2 , NHR', NR' 2 , CO 2 R', CONH 2 ,
  • each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • G) Z is N or CR 12 ;
  • a seventh aspect of the fourth embodiment is directed to a compound represented by formula 1-8
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , halogen, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2 , N 3 , CN, Cl, Br, F, I, OC(O)CH 3 ,
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • O) Z is N or CR 12 ;
  • An eighth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
  • R 1 is hydrogen, methyl, ethyl, n-propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl , N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H; (f) R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH 3 , or OC(O)CH 3 ;
  • R 1 is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
  • O) Z is N or CR 12 ;
  • a ninth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
  • R 1 is hydrogen, methyl, ethyl, n-propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • O) Z is N or CR 12 ;
  • a tenth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR' 2 , each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms;
  • Q) Z is N or CR 12 ;
  • a fifth embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula d above, wherein R 1 , R 2 , R 3a , R 3b , R 4 , R 5 , R 6 , X, and Y are defined in the Summary of the Invention section above.
  • the first aspect of the fifth embodiment is directed to a compound represented by formula 1-9
  • R is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1 -6 alkoxy, F, Cl, Br, I, nitro, cyano, C 1-6 haloalkyl, -N(R 1 ) 2 , C 1-6 acylamino, - NHSO 2 C 1-6 alkyl, -SO 2 N(R r ) 2 , COR 1- , and -SO 2 C 1-6 alkyl;
  • R 1' is independently hydrogen or alkyl, which includes, but is not limited to, C 1-20 alkyl, C 1-10 alkyl, or C 1-6 alkyl, R 1 - is -OR' or -N(R r r
  • R 2 is hydrogen or CH 3 ;
  • R 4 is hydrogen, C -10 alkyl, C 1-1 O alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C -10 haloalkyl, C 3- io cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH 2 ) P OH, where p is 1 -6, including hydroxyl methyl (CH 2 OH), CH 2 F, N 3 , CH 2 CN, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R 6 is H, R 5 cannot be N 3 and when X is OH, R 6 is CH 3 or CH 2 F and B is a purine base, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OMe, halogen, NH 2 , or N 3 ;
  • Y is OH, H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, vinyl, N 3 , CN, Cl, Br, F, I, NO 2 , OC(O)O(C 1-4 alkyl), OC(O)O(C 1-4 alkyl), OC(O)O(C 2-4 alkynyl), OC(O)O(C 2-4 alkenyl), Od -10 haloalkyl, O(aminoacyl), 0(C 1-10 acyl), 0(C 1-4 alkyl), 0(C 2-4 alkenyl), S(C 1-4 acyl), S(C 1-4 alkyl), S(C 2-4 alkynyl), S(C 2-4 alkenyl), SO(C 1-4 acyl), SO(C 1-4 alkyl), SO(C 2-4 alkynyl), SO(C 2-4 alkenyl), SO 2 (C 1-4 acyl), SO 2 (C
  • a second aspect of the fifth embodiment is directed to a compound represented by formula 1-9
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 ,
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H.
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , halogen, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ;
  • a third aspect of the fifth embodiment is directed to a compound represented by formula 1-9
  • R 1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, r Pr, n Pr, n Bu, 2-butyl, f Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I; with the proviso that X is OH,
  • R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 N 3 , OCH 3 , or OC(O)CH 3 ;
  • a fourth aspect of the fifth embodiment is directed to a compound represented by formula 1-9
  • R 1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • a fifth aspect of the fifth embodiment is directed to a compound represented by formula 1-9
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, r Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • a sixth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, /-propyl, or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH 3 , OCH 3 , F, Cl, Br, I, nitro, cyano, and a CH 3-q X q , where X is F, Cl, Br, or I, and q is 1-3;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , -
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, N 3 , CH 2 CN, CH 2 N 3 ,
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 ,
  • a seventh aspect of the fifth embodiment is directed to a compound represented by formula 1-10
  • R 1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, CH 2 -indol-3-yl, -CH 2 CH 2 SCH 3 , CH 2 CO 2 H, CH 2 C(O)NH 2 , CH 2 CH 2 COOH, CH 2 CH 2 C(O)NH 2 , CH 2 CH 2 CH 2 CH 2 NH 2 , -
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 3 , OCH 3 , CH 2 OH, CH 2 F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , F, or CN;
  • X is H, OH, F, OCH 3 , Cl, Br, I, NH 2 , or N 3 ;
  • Y is OH, H, CH 3 , vinyl, NH 2 , N 3 , CN, Cl, Br, F, I, OC(O)CH 3 , OCH 3 .
  • An eighth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
  • R 1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen or CH 3 ;
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, 1 Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, CN, CH 2 F, F, Cl, Br, or I, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, F, OCH 3 , F, Cl, Br, I, NH 2 or N 3 ;
  • Y is H, OH, CH 3 , F, Cl, Br, I, NH 2 or N 3 , OCH 3 , or OC(O)CH 3 ;
  • a ninth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
  • R 1 is hydrogen, methyl, ethyl, ⁇ -propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, n Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3 -yl, N-methy l-pyrrolidin-3 -y 1, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F, R 5 cannot be H;
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 ;
  • a tenth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
  • R 1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
  • R 2 is hydrogen
  • R 3a is H and R 3b is H, CH 3 , CH(CH 3 ) 2 , CH 2 CH(CH 3 ) 2 , CH(CH 3 )CH 2 CH 3 , CH 2 Ph, or lower cycloalkyl;
  • R 4 is hydrogen, CH 3 , Et, i Pr, "Pr, n Bu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
  • R 5 is H, with the provisos that when X is OH, R 6 is CH 3 or CH 2 F,
  • R 5 cannot be H
  • R 6 is H, CH 3 , CH 2 F, CHF 2 , CF 3 , or F;
  • X is H, OH, OCH 3 , F, NH 2 or N 3 ;
  • Y is OH, NH 2 , OCH 3 , or OC(O)CH 3 .
  • the phosphoramidate substituent containing the substituents R 3a and R 3b are depicted without reference to stereochemical structure ⁇ cf. structures 1-1, 1-3, 1-5, 1-7, and 1-9 above). It is contemplated that the compounds recited below embody compounds in which R 3a projects toward the viewer while R 3b projects away from the viewer (cf. structures 1-2, 1-4, 1-6, 1-8, and 1-10). Moreover, it is contemplated that the compounds recited below also embody compounds in which R 3a projects away from the viewer while R 3b projects towards the viewer.
  • preferred compounds are those in which R 3a projects towards the viewer and R 3b projects away from the viewer such that the natural L-amino acid (S)-configuration is presented. Additionally, the inventors recognize that the phosphorus atom of the phosphoramidate moiety is another source of chirality.
  • the structures below do not specifically depict chirality at phosphorus, the inventors recognize that stereochemical configurations are possible such that in a staggered (or zig- zag) line structure the oxo-substitutent projects towards the viewer while the OR 1 substitutent projects away from the viewer, and vice versa, i.e., where the Cahn-Ingold-Prelog stereochemical designation of phosphorous is either R or S. Therefore, the structures below include all possible stereochemical configurations possible for phosphorus.
  • a sixth embodiment of the present invention is directed to a composition for the treatment of any of the viral agents disclosed herein said composition comprising a pharmaceutically acceptable medium selected from among an excipient, carrier, diluent, and equivalent medium and a compound, that is intended to include its salts (acid or basic addition salts), hydrates, solvates, and crystalline forms can be obtained, represented by formula I.
  • formulation of the sixth embodiment can contain any of the compounds contemplated in any of the aspects of the first, second, third, fourth, and fifth embodiments or those specifically recited in the tables above or exemplified herein, either alone or in combination with another compound of the present invention.
  • the compounds of the present invention may be formulated in a wide variety of oral administration dosage forms and carriers.
  • Oral administration can be in the form of tablets, coated tablets, hard and soft gelatin capsules, solutions, emulsions, syrups, or suspensions.
  • Compounds of the present invention are efficacious when administered by suppository administration, among other routes of administration.
  • the most convenient manner of administration is generally oral using a convenient daily dosing regimen which can be adjusted according to the severity of the disease and the patient's response to the antiviral medication.
  • a compound or compounds of the present invention, as well as their pharmaceutically acceptable salts, together with one or more conventional excipients, carriers, or diluents, may be placed into the form of pharmaceutical compositions and unit dosages.
  • the pharmaceutical compositions and unit dosage forms may be comprised of conventional ingredients in conventional proportions, with or without additional active compounds and the unit dosage forms may contain any suitable effective amount of the active ingredient commensurate with the intended daily dosage range to be employed.
  • the pharmaceutical compositions may be employed as solids, such as tablets or filled capsules, semisolids, powders, sustained release formulations, or liquids such as suspensions, emulsions, or filled capsules for oral use; or in the form of suppositories for rectal or vaginal administration.
  • a typical preparation will contain from about 5% to about 95% active compound or compounds (w/w).
  • preparation or “dosage form” is intended to include both solid and liquid formulations of the active compound and one skilled in the art will appreciate that an active ingredient can exist in different preparations depending on the desired dose and pharmacokinetic parameters.
  • excipient refers to a compound that is used to prepare a pharmaceutical composition, and is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes excipients that are acceptable for veterinary use as well as human pharmaceutical use.
  • the compounds of this invention can be administered alone but will generally be administered in admixture with one or more suitable pharmaceutical excipients, diluents or carriers selected with regard to the intended route of administration and standard pharmaceutical practice.
  • a “pharmaceutically acceptable salt” form of an active ingredient may also initially confer a desirable pharmacokinetic property on the active ingredient which were absent in the non-salt form, and may even positively affect the pharmacodynamics of the active ingredient with respect to its therapeutic activity in the body.
  • pharmaceutically acceptable salt of a compound as used herein means a salt that is pharmaceutically acceptable and that possesses the desired pharmacological activity of the parent compound.
  • Such salts include: (1) acid addition salts, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like; or formed with organic acids such as glycolic acid, pyruvic acid, lactic acid, malonic acid, malic acid, maleic acid, fumaric acid, tartaric acid, citric acid, 3-(4-hydroxybenzoyl)benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethane-disulfonic acid, 2- hydroxyethanesulfonic acid, benzenesulfonic acid, 4-chlorobenzenesulfonic acid, 2-naphthalenesulfonic acid, 4-toluenesulfonic acid, camphorsulfonic acid, lauryl sulfuric acid, gluconic acid, glutamic acid, salicylic acid, muconic acid, and the like
  • Solid form preparations include powders, tablets, pills, capsules, suppositories, and dispersible granules.
  • a solid carrier may be one or more substances which may also act as diluents, flavoring agents, solubilizers, lubricants, suspending agents, binders, preservatives, tablet disintegrating agents, or an encapsulating material.
  • the carrier In powders, the carrier generally is a finely divided solid which is a mixture with the finely divided active component.
  • the active component In tablets, the active component generally is mixed with the carrier having the necessary binding capacity in suitable proportions and compacted in the shape and size desired.
  • Suitable carriers include but are not limited to magnesium carbonate, magnesium stearate, talc, sugar, lactose, pectin, dextrin, starch, gelatin, tragacanth, methylcellulose, sodium carboxymethylcellulose, a low melting wax, cocoa butter, and the like.
  • Solid form preparations may contain, in addition to the active component, colorants, flavors, stabilizers, buffers, artificial and natural sweeteners, dispersants, thickeners, solubilizing agents, and the like.
  • Liquid formulations also are suitable for oral administration include liquid formulation including emulsions, syrups, elixirs and aqueous suspensions. These include solid form preparations which are intended to be converted to liquid form preparations shortly before use. Emulsions may be prepared in solutions, for example, in aqueous propylene glycol solutions or may contain emulsifying agents such as lecithin, sorbitan monooleate, or acacia. Aqueous suspensions can be prepared by dispersing the finely divided active component in water with viscous material, such as natural or synthetic gums, resins, methylcellulose, sodium carboxymethylcellulose, and other well known suspending agents.
  • viscous material such as natural or synthetic gums, resins, methylcellulose, sodium carboxymethylcellulose, and other well known suspending agents.
  • the compounds of the present invention may be formulated for administration as suppositories.
  • a low melting wax such as a mixture of fatty acid glycerides or cocoa butter is first melted and the active component is dispersed homogeneously, for example, by stirring. The molten homogeneous mixture is then poured into convenient sized molds, allowed to cool, and to solidify.
  • the compounds of the present invention may be formulated for vaginal administration. Pessaries, tampons, creams, gels, pastes, foams or sprays containing in addition to the active ingredient such carriers as are known in the art to be appropriate.
  • Suitable formulations along with pharmaceutical carriers, diluents and expcipients are described in Remington: The Science and Practice of Pharmacy 1995, edited by E. W. Martin, Mack Publishing Company, 19th edition, Easton, Pennsylvania, which is hereby incorporated by reference.
  • the compounds of the present invention can also be encapsulated in liposomes, such as those disclosed in U.S. Patent Nos. 6,180,134, 5,192,549, 5,376,380, 6,060,080, 6,132,763, each of which is incorporated by reference.
  • a skilled formulation scientist may modify the formulations within the teachings of the specification to provide numerous formulations for a particular route of administration without rendering the compositions of the present invention unstable or compromising their therapeutic activity.
  • the modification of the present compounds to render them more soluble in water or other vehicle may be easily accomplished by minor modifications (e.g., salt formulation), which are well within the ordinary skill in the art. It is also well within the ordinary skill of the art to modify the route of administration and dosage regimen of a particular compound in order to manage the pharmacokinetics of the present compounds for maximum beneficial effect in patients.
  • a seventh embodiment of the present invention is directed to a use of the compound represented by formula I in the manufacture of a medicament for the treatment of any condition the result of an infection by any one of the following viral agents: hepatitis C virus, West Nile virus, yellow fever virus, dengue virus, rhinovirus, polio virus, hepatitis A virus, bovine viral diarrhea virus and Japanese encephalitis virus.
  • the term “medicament” means a substance used in a method of treatment and/or prophylaxis of a subject in need thereof, wherein the substance includes, but is not limited to, a composition, a formulation, a dosage form, and the like, comprising the compound of formula I. It is contemplated that the compound of the use of the compound represented by formula I in the manufacture of a medicament for the treatment of any of the antiviral conditions disclosed herein of the seventh embodiment can be any of the compounds contemplated in any of the aspects of the first, second, third, fourth, fifth embodiments or those specifically recited in the tables above or exemplified herein, either alone or in combination with another compound of the present invention.
  • a medicament includes, but is not limited to, any one of the compositions contemplated by the sixth embodiment of the present invention.
  • a eighth embodiment of the present invention is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering a therapeutically effective amount of the compound represented by formula I to the subject.
  • a first aspect of the eighth embodiment is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering a therapeutically effective of at least two or more different compounds falling within the scope of the compound represented by formula I to the subject.
  • a second aspect of the eighth embodiment is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises alternatively or concurrently administering a therapeutically effective of at least two compounds falling within the scope of the compound represented by formula I to the subject.
  • a subject in need thereof is one that has any condition the result of an infection by any of the viral agents disclosed herein, which includes, but is not limited to, hepatitis C virus, West Nile virus, yellow fever virus, dengue virus, rhinovirus, polio virus, hepatitis A virus, bovine viral diarrhea virus or Japanese encephalitis virus, flaviviridae viruses or pestiviruses or hepaciviruses or a viral agent causing symptoms equivalent or comparable to any of the above-listed viruses.
  • the viral agents disclosed herein includes, but is not limited to, hepatitis C virus, West Nile virus, yellow fever virus, dengue virus, rhinovirus, polio virus, hepatitis A virus, bovine viral diarrhea virus or Japanese encephalitis virus, flaviviridae viruses or pestiviruses or hepaciviruses or a viral agent causing symptoms equivalent or comparable to any of the above-listed viruses.
  • subject means a mammal, which includes, but is not limited to, cattle, pigs, sheep, chicken, turkey, buffalo, llama, ostrich, dogs, cats, and humans, preferably the subject is a human. It is contemplated that in the method of treating a subject thereof of the sixth embodiment can be any of the compounds contemplated in any of the aspects of the first, second, and third embodiments or those specifically recited in the tables above, either alone or in combination with another compound of the present invention.
  • terapéuticaally effective amount means an amount required to reduce symptoms of the disease in an individual.
  • the dose will be adjusted to the individual requirements in each particular case. That dosage can vary within wide limits depending upon numerous factors such as the severity of the disease to be treated, the age and general health condition of the patient, other medicaments with which the patient is being treated, the route and form of administration and the preferences and experience of the medical practitioner involved.
  • a daily dosage of between about 0.1 and about 10 g, including all values in between, such as 0.25, 0.5, 0.75, I 5 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8, 8.5, 9, and 9.5, per day should be appropriate in monotherapy and/or in combination therapy.
  • a preferred daily dosage is between about 0.5 and about 7.5 g per day, more preferred 1.5 and about 6.0 g per day.
  • treatment is initiated with a large initial "loading dose" to rapidly reduce or eliminate the virus following by a decreasing the dose to a level sufficient to prevent resurgence of the infection.
  • Therapeutic efficacy can be ascertained from tests of liver function including, but not limited to protein levels such as serum proteins (e.g., albumin, clotting factors, alkaline phosphatase, aminotransferases (e.g., alanine transaminase, aspartate transaminase), 5 '-nucleosidase, ⁇ - glutaminyltranspeptidase, etc.), synthesis of bilirubin, synthesis of cholesterol, and synthesis of bile acids; a liver metabolic function, including, but not limited to, carbohydrate metabolism, amino acid and ammonia metabolism.
  • serum proteins e.g., albumin, clotting factors, alkaline phosphatase, aminotransferases (e.g., alanine transaminase, aspartate transaminase), 5 '-nucleosidase, ⁇ - glutaminyltranspeptidase, etc.)
  • the therapeutic effectiveness may be monitored by measuring HCV-RNA. The results of these tests will allow the dose to be optimized.
  • a third aspect of the eighth embodiment is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering to the subject a therapeutically effective of a compound represented by formula I and a therapeutically effective amount of another antiviral agent; wherein the administration is concurrent or alternative.
  • the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours.
  • HCV NS3 protease inhibitors see WO 2008010921, WO 2008010921, EP 1881001, WO 2007015824, WO 2007014925, WO 2007014926, WO 2007014921, WO 2007014920, WO 2007014922, US 2005267018, WO 2005095403, WO 2005037214, WO 2004094452, US 2003187018, WO 200364456, WO 2005028502, and WO 2003006490); HCV NS5B Inhibitors (see US 2007275947, US20072759300, WO2007095269, WO 2007092000, WO 2007076034, WO 200702602, US 2005-98125, WO 2006093801, US 2006166964, WO 2006065590, WO 2006065335, US 2006040927, US 2006040890, WO 2006020082, WO 2006012078, WO 2005123087
  • HCV NS4 Inhibitors see WO 2007070556 and WO 2005067900
  • HCV NS5a Inhibitors see US 2006276511, WO 2006120252, WO 2006120251, WO 2006100310, WO 2006035061
  • Toll-like receptor agonists see WO 2007093901
  • other inhibitors see WO 2004035571, WO 2004014852, WO 2004014313, WO 2004009020, WO 2003101993, WO 2000006529.
  • a fourth aspect of the eighth embodiment is directed to a method of treatment in a subject in need thereof said method comprises alternatively or concurrently administering a therapeutically effective of a compound represented by formula I and another antiviral agent to the subject. It is understood that the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours.
  • a fifth aspect of the eighth embodiment is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering to the subject a therapeutically effective of at least one compound represented by formula I and a therapeutically effective amount of another antiviral agent; wherein the administration is concurrent or alternative.
  • the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours.
  • a sixth aspect of the eighth embodiment is directed to a method of treatment in a subject in need thereof said method comprises alternatively or concurrently administering a therapeutically effective of at least one compound represented by formula I and another antiviral agent to the subject. It is understood that the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours.
  • the another antiviral agent includes, but is not limited to interferon - ⁇ , interferon- ⁇ , pegylated interferon- ⁇ , ribavirin, levovirin, viramidine, another nucleoside HCV polymerase inhibitor, a HCV non-nucleoside polymerase inhibitor, a HCV protease inhibitor, a HCV helicase inhibitor or a HCV fusion inhibitor.
  • the active compound or its derivative or salt are administered in combination with another antiviral agent the activity may be increased over the parent compound.
  • the treatment is combination therapy, such administration may be concurrent or sequential with respect to that of the nucleoside derivatives.
  • Constant administration thus includes administration of the agents at the same time or at different times. Administration of two or more agents at the same time can be achieved by a single formulation containing two or more active ingredients or by substantially simultaneous administration of two or more dosage forms with a single active agent.
  • references herein to treatment extend to prophylaxis as well as to the treatment of existing conditions.
  • treatment also includes treatment or prophylaxis of a disease or a condition associated with or mediated by HCV infection, or the clinical symptoms thereof.
  • An ninth embodiment of the present invention is directed to a process for preparing the compound of formula I, which comprises reacting a suitably substituted phosphochloridate compound 4 with a nucleoside analog 5
  • substituents R 1 , R 2 , R 3a , R 3b , R 4 , R 5 , X, Y, R 6 , and base have their meanings as disclosed in the Detailed Description of the Invention and X' is a leaving group, such as Cl, Br, I, tosylate, mesylate, trifluoroacetate, trifluorosulfonate, pentafluorophenoxide, p-NO 2 -phenoxide, or other commonly used leaving groups as disclosed in Advanced Organic Chemistry by March, Fourth Edition. Leaving groups and methods that can be used to effect the formation of a phosphoramidate nucleoside conjugate are found in US 20060142238 and WO 2007095269.
  • the leaving group is Cl.
  • This reaction is performed in an anhydrous aprotic solvent such tetrahydrofuran, dioxane, or both tetrahydrofuran and dioxane, or any functional equivalent thereof, with tetrahydrofuran being the preferred solvent.
  • the reaction is typically initiated at a temperature range from -78°C to 4O°C with the preferred reaction temperature being between O°C and room temperature.
  • the nucleoside is first stirred with a base (5 to 12 equivalents) such as N- methylimidazole, collidine, pyridine, 2,6-lutidine, 2, 6-'Bu-pyridine, etc.
  • a tertiary amine base such as triethylamine, diisopropylethylamine, etc.
  • an alkyl Grignard reagent such as tBuMgCl, tBuMgBr, MeMgCl, MeMgBr, etc.
  • the phosphorochloridate (3-10 equivalents) is dissolved in the reaction solvent and added to the mixture of the nucleoside and base.
  • the reaction is then allowed to stir over a period of time at a temperature between room temperature and 4O°C for a period of 30 min to 24 hr. with the preferred reaction temperature being room temperature and time being 24 hr.
  • the solvent is removed from the reaction mixture and the product is purified by chromatography on silica gel.
  • a tenth embodiment of the present invention is directed to a product obtained by a process which comprises reacting a suitably substituted phosphochloridate compound 4 with a nucleoside analog 5
  • This reaction can be performed in an anhydrous aprotic solvent or other suitable solvent, such as tetrahydrofuran, dioxane, or a mixture of tetrahydrofuran and dioxane, with tetrahydrofuran being the preferred solvent.
  • the reaction is typically initiated at a temperature range from -78°C to 4O°C with the preferred reaction temperature being between O°C and room temperature.
  • the nucleoside is first stirred with a base (5 to 12 equivalents) such as N- methylimidazole, a tertiary amine base or tButyl Magnesium Chloride.
  • a phosphorochloridate (3-10 equivalents (or suitable "phosphoro-(leaving group)- date")) is dissolved in the reaction solvent and added to the mixture of the nucleoside and base.
  • the reaction is then allowed to stir over a period of time at a temperature between room temperature and 4O°C for a period of 30 min to 24 hr. with the preferred reaction temperature being room temperature and time being 24 hr.
  • the solvent is removed from the reaction mixture and the product is purified by chromatography on silica gel.
  • Phosphoramidate compounds of the present invention can be prepared by condensation of a nucleoside analog 5 with a suitably substituted phosphochloridate compound 4 (Scheme 1).
  • the nucleoside analog is made by conventional procedures disclosed in any one of U.S. Published Application Nos. 2005/0009737, 2006/0199783, 2006/0122146, and 2007/0197463, each of which is incorporated by reference in its entirety.

Landscapes

  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Medicinal Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Animal Behavior & Ethology (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Epidemiology (AREA)
  • Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Genetics & Genomics (AREA)
  • Virology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Oncology (AREA)
  • Communicable Diseases (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Pulmonology (AREA)
  • AIDS & HIV (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Saccharide Compounds (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Medicinal Preparation (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)

Abstract

Disclosed herein are phosphoramidate prodrugs of nucleoside derivatives for the treatment of viral infections in mammals, which is a compound, its stereoisomer, salt (acid or basic addition salt), hydrate, solvate, or crystalline form thereof, represented by the following structure: Also disclosed are methods of treatment, uses, and processes for preparing each of which utilize the compound represented by formula (I).

Description

NUCLEOSIDE PHOSPHORAMIDATE PRODRUGS
This application is being filed on March 25, 2008, as a PCT International Patent application in the name of Pharmasset, Inc., a U.S. national corporation, applicant for the designation of all countries except the US, and Michael Joseph Sofia, a citizen of the U.S.; Jinfa Du, a citizen of the U.S.; Peiyuan Wang, a citizen of the People's Republic of China; and Dhanapalan Nagarathnam, a citizen of the U.S.; applicants for the designation of the US only, and claims priority to U.S. Provisional Application Nos. 60/909,315, filed March 30, 2007; 60/982,309, filed October 24, 2007; and U.S. Non-Provisional Application No. 12/053,015, filed March 21, 2008. The contents of each of the above-noted applications is hereby incorporated by reference in its entirety.
Field of Invention
The present invention pertains to nucleoside phosphoramidates and their use as agents for treating viral diseases. These compounds are inhibitors of RNA-dependent RNA viral replication and are useful as inhibitors of HCV NS5B polymerase, as inhibitors of HCV replication and for treatment of hepatitis C infection in mammals. The invention provides novel chemical compounds, and the use of these compounds alone or in combination with other antiviral agents for treating HCV infection.
Background
Hepatitis C virus (HCV) infection is a major health problem that leads to chronic liver disease, such as cirrhosis and hepatocellular carcinoma, in a substantial number of infected individuals, estimated to be 2-15% of the world's population. There are an estimated 4.5 million infected people in the United States alone, according to the U.S. Center for Disease Control. According to the World Health Organization, there are more than 200 million infected individuals worldwide, with at least 3 to 4 million people being infected each year. Once infected, about 20% of people clear the virus, but the rest can harbor HCV the rest of their lives. Ten to twenty percent of chronically infected individuals eventually develop liver-destroying cirrhosis or cancer. The viral disease is transmitted parenterally by contaminated blood and blood products, contaminated needles, or sexually and vertically from infected mothers or carrier mothers to their offspring. Current treatments for HCV infection, which are restricted to immunotherapy with recombinant interferon-α alone or in combination with the nucleoside analog ribavirin, are of limited clinical benefit. Moreover, there is no established vaccine for HCV. Consequently, there is an urgent need for improved therapeutic agents that effectively combat chronic HCV infection.
The HCV virion is an enveloped positive-strand RNA virus with a single oligoribonucleotide genomic sequence of about 9600 bases which encodes a polyprotein of about 3,010 amino acids. The protein products of the HCV gene consist of the structural proteins C, El, and E2, and the non-structural proteins NS2, NS3, NS4A and NS4B, and NS5A and NS5B. The nonstructural (NS) proteins are believed to provide the catalytic machinery for viral replication. The NS3 protease releases NS5B, the RNA-dependent RNA polymerase from the polyprotein chain. HCV NS5B polymerase is required for the synthesis of a double-stranded RNA from a single-stranded viral RNA that serves as a template in the replication cycle of HCV. Therefore, NS5B polymerase is considered to be an essential component in the HCV replication complex (K. Ishi, et al, Heptology, 1999, 29: 1227-1235; V. Lohmann, et al., Virology, 1998, 249: 108- 118). Inhibition of HCV NS5B polymerase prevents formation of the double- stranded HCV RNA and therefore constitutes an attractive approach to the development of HCV-specific antiviral therapies.
HCV belongs to a much larger family of viruses that share many common features.
Flaviviridae Viruses
The Flaviviridae family of viruses comprises at least three distinct genera: pestiviruses, which cause disease in cattle and pigs; flavivruses, which are the primary cause of diseases such as dengue fever and yellow fever; and hepaciviruses, whose sole member is HCV. The flavivirus genus includes more than 68 members separated into groups on the basis of serological relatedness (Calisher et al., J. Gen. Virol, 1993,70,37-43). Clinical symptoms vary and include fever, encephalitis and hemorrhagic fever (Fields Virology, Editors: Fields, B. N., Knipe, D. M., and Howley, P. M., Lippincott-Raven Publishers, Philadelphia, PA, 1996, Chapter 31, 931-959). Flaviviruses of global concern that are associated with human disease include the Dengue Hemorrhagic Fever viruses (DHF), yellow fever virus, shock syndrome and Japanese encephalitis virus (Halstead, S. B., Rev. Infect. Dis., 1984, 6, 251-264; Halstead, S. B., Science, 239:476-481, 1988; Monath, T. P., New Eng. J. Med, 1988, 319, 64 1- 643). The pestivirus genus includes bovine viral diarrhea virus (BVDV), classical swine fever virus (CSFV, also called hog cholera virus) and border disease virus (BDV) of sheep (Moennig, V. et al. Adv. Vir. Res. 1992, 41, 53- 98). Pestivirus infections of domesticated livestock (cattle, pigs and sheep) cause significant economic losses worldwide. BVDV causes mucosal disease in cattle and is of significant economic importance to the livestock industry (Meyers, G. and Thiel, H.J., Advances in Virus Research, 1996, 47, 53-118; Moennig V., et al, Adv. Vir. Res. 1992, 41, 53-98). Human pestiviruses have not been as extensively characterized as the animal pestiviruses. However, serological surveys indicate considerable pestivirus exposure in humans.
Pestiviruses and hepaciviruses are closely related virus groups within the Flaviviridae family. Other closely related viruses in this family include the GB virus A, GB virus A-like agents, GB virus-B and GB virus-C (also called hepatitis G virus, HGV). The hepacivirus group (hepatitis C virus; HCV) consists of a number of closely related but genotypically distinguishable viruses that infect humans. There are at least 6 HCV genotypes and more than 50 subtypes. Due to the similarities between pestiviruses and hepaciviruses, combined with the poor ability of hepaciviruses to grow efficiently in cell culture, bovine viral diarrhea virus (BVDV) is often used as a surrogate to study the HCV virus.
The genetic organization of pestiviruses and hepaciviruses is very similar. These positive stranded RNA viruses possess a single large open reading frame (ORF) encoding all the viral proteins necessary for virus replication. These proteins are expressed as a polyprotein that is co- and post-translationally processed by both cellular and virus-encoded proteinases to yield the mature viral proteins. The viral proteins responsible for the replication of the viral genome RNA are located within approximately the carboxy-terminal. Two- thirds of the ORF are termed nonstructural (NS) proteins. The genetic organization and polyprotein processing of the nonstructural protein portion of the ORF for pestiviruses and hepaciviruses is very similar. For both the pestiviruses and hepaciviruses, the mature nonstructural (NS) proteins, in sequential order from the amino-terminus of the nonstructural protein coding region to the carboxy-terminus of the ORF, consist of p7, NS2, NS3, NS4A, NS4B, NS5A, and NS5B.
The NS proteins of pestiviruses and hepaciviruses share sequence domains that are characteristic of specific protein functions. For example, the NS3 proteins of viruses in both groups possess amino acid sequence motifs characteristic of serine proteinases and of helicases (Gorbalenya et al., Nature, 1988, 333, 22; Bazan and Fletterick Virology , 1989,171,637-639; Gorbalenya et al., Nucleic Acid Res., 1989, 17, 3889-3897). Similarly, the NS5B proteins of pestiviruses and hepaciviruses have the motifs characteristic of RNA-directed RNA polymerases (Koonin, E. V. and DoIj a, V.V., Crir. Rev. Biochem. Molec. Biol. 1993, 28, 375-430).
The actual roles and functions of the NS proteins of pestiviruses and hepaciviruses in the lifecycle of the viruses are directly analogous. In both cases, the NS3 serine proteinase is responsible for all proteolytic processing of polyprotein precursors downstream of its position in the ORF (Wiskerchen and Collett, Virology, 1991, 184, 341-350; Bartenschlager et al., J. Virol. 1993, 67, 3835-3844; Eckart et al. Biochem. Biophys. Res. Comm. 1993,192, 399-406; Grakoui et al., J. Virol. 1993, 67, 2832-2843; Grakoui et al., Proc. Natl. Acad Sci. USA 1993, 90, 10583-10587; Hijikata et al., J. Virol. 1993, 67, 4665-4675; Tome et al., J. Virol., 1993, 67, 4017-4026). The NS4A protein, in both cases, acts as a cofactor with the NS3 serine protease (Bartenschlager et al., J. Virol. 1994, 68, 5045-5055; Failla et al., J. Virol. 1994, 68, 3753-3760; Xu et al., J. Virol., 1997, 71:53 12-5322). The NS3 protein of both viruses also functions as a helicase (Kim et al., Biochem. Biophys. Res. Comm., 1995, 215, 160-166; Jin and Peterson, Arch. Biochem. Biophys., 1995, 323, 47-53; Warrener and Collett, J. Virol. 1995, 69, 1720- 1726). Finally, the NS5B proteins of pestiviruses and hepaciviruses have the predicted RNA-directed RNA polymerases activity (Behrens et al., EMBO, 1996, 15, 12-22; Lechmann et al., J. Virol, 1997, 71, 8416-8428; Yuan et al., Biochem. Biophys. Res. Comm. 1997, 232, 231-235; Hagedorn, PCT WO 97/12033; Zhong et al, J. Virol., 1998, 72, 9365-9369).
Currently, there are limited treatment options for individuals infected with hepatitis C virus. The current approved therapeutic option is the use of immunotherapy with recombinant interferon-α alone or in combination with the nucleoside analog ribavirin. This therapy is limited in its clinical effectiveness and only 50% of treated patients respond to therapy. Therefore, there is significant need for more effective and novel therapies to address the unmet medical need posed by HCV infection.
A number of potential molecular targets for drug development of direct acting antivirals as anti -HCV therapeutics have now been identified including, but not limited to, the NS2-NS3 autoprotease, the N3 protease, the N3 helicase and the NS5B polymerase. The RNA-dependent RNA polymerase is absolutely essential for replication of the single-stranded, positive sense, RNA genome and this enzyme has elicited significant interest among medicinal chemists.
Inhibitors of HCV NS5B as potential therapies for HCV infection have been reviewed: Tan, S.-L., et al., Nature Rev. Drug Discov., 2002, 1 , 867-881 ; Walker, M.P. et al., Exp. Opin. Investigational Drugs, 2003, 12, 1269-1280; Ni, Z-J., et al., Current Opinion in Drug Discovery and Development, 2004, 7, 446- 459; Beaulieu, P. L., et al., Current Opinion in Investigational Drugs, 2004, 5, 838-850; Wu, J., et al., Current Drug Targets-Infectious Disorders, 2003, 3, 207-219; Griffith, R.C., et al, Annual Reports in Medicinal Chemistry, 2004, 39, 223-237; Carrol, S., et al., Infectious Disorders-Drug Targets, 2006, 6, 17-29. The potential for the emergence of resistant HCV strains and the need to identify agents with broad genotype coverage supports the need for continuing efforts to identify novel and more effective nucleosides as HCV NS5B inhibitors.
Nucleoside inhibitors of NS5B polymerase can act either as a non-natural substrate that results in chain termination or as a competitive inhibitor which competes with nucleotide binding to the polymerase. To function as a chain terminator the nucleoside analog must be taken up by the cell and converted in vivo to a triphosphate to compete for the polymerase nucleotide binding site. This conversion to the triphosphate is commonly mediated by cellular kinases which imparts additional structural requirements on a potential nucleoside polymerase inhibitor. Unfortunately, this limits the direct evaluation of nucleosides as inhibitors of HCV replication to cell-based assays capable of in situ phosphorylation. In some cases, the biological activity of a nucleoside is hampered by its poor substrate characteristics for one or more of the kinases needed to convert it to the active triphosphate form. Formation of the monophosphate by a nucleoside kinase is generally viewed as the rate limiting step of the three phosphorylation events. To circumvent the need for the initial phosphorylation step in the metabolism of a nucleoside to the active triphosphate analog, the preparation of stable phosphate prodrugs has been reported. Nucleoside phosphoramidate prodrugs have been shown to be precursors of the active nucleoside triphosphate and to inhibit viral replication when administered to viral infected whole cells (McGuigan, C, et al., J. Med. Chem., 1996, 39, 1748- 1753; Valette, G., et al., J. Med. Chem., 1996, 39, 1981-1990; Balzarini, J., et al., Proc. National Acad Sci USA, 1996, 93, 7295-7299; Siddiqui, A. Q., et al., J. Med. Chem., 1999, 42, 4122-4128; Eisenberg, E. J., et al., Nucleosides, Nucleotides and Nucleic Acids, 2001, 20, 1091-1098; Lee, W.A., et al., Antimicrobial Agents and Chemotherapy, 2005, 49, 1898); US 2006/0241064; and WO 2007/095269.
Also limiting the utility of nucleosides as viable therapeutic agents is their sometimes poor physicochemical and pharmacokinetic properties. These poor properties can limit the intestinal absorption of an agent and limit uptake into the target tissue or cell. To improve on their properties prodrugs of nucleosides have been employed. It has been demonstrated that preparation of nucleoside phosphoramidates improves the systemic absorption of a nucleoside and furthermore, the phosphoramidate moiety of these "pronucleotides" is masked with neutral lipophilic groups to obtain a suitable partition coefficient to optimize uptake and transport into the cell dramatically enhancing the intracellular concentration of the nucleoside monophosphate analog relative to administering the parent nucleoside alone. Enzyme-mediated hydrolysis of the phosphate ester moiety produces a nucleoside monophosphate wherein the rate limiting initial phosphorylation is unnecessary.
SUMMARY OF THE INVENTION
The present invention is directed toward novel phosphoramidate prodrugs of nucleoside derivatives for the treatment of viral infections in mammals, which is a compound, its stereoisomers, salts (acid or basic addition salts), hydrates, solvates, or crystalline forms thereof, represented by the following structure:
Figure imgf000010_0001
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1 -, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR' or -N(Rr)2);
(b) R2 is hydrogen, C I-10 alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR3aR3bNHR', where n is 2 to 4 and R1, R3a, and R3b; (c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl,
CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)pOH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN,
Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), O(C1-10 acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), O(C1-4 acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000013_0001
wherein
Z is N or CR12;
R7, R8,R9, R10, and Rnare independently H, F, Cl, Br, I, OH, OR', SH,
SR', NH2, NHR', NR'2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
R12 is H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR',
NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C, -C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R11 being hydrogen, R12 is not a: (i) -OC-H, (ii) -C=CH2, or (iii) -NO2.
DEFINITIONS
The phrase "a" or "an" entity as used herein refers to one or more of that entity; for example, a compound refers to one or more compounds or at least one compound. As such, the terms "a" (or "an"), "one or more", and "at least one" can be used interchangeably herein.
The phrase "as defined herein above" refers to the first definition provided in the Summary of the Invention.
The terms "optional" or "optionally" as used herein means that a subsequently described event or circumstance may but need not occur, and that the description includes instances where the event or circumstance occurs and instances in which it does not. For example, "optional bond" means that the bond may or may not be present, and that the description includes single, double, or triple bonds.
The term "independently" is used herein to indicate that a variable is applied in any one instance without regard to the presence or absence of a variable having that same or a different definition within the same compound. Thus, in a compound in which R appears twice and is defined as "independently carbon or nitrogen", both R's can be carbon, both R's can be nitrogen, or one R' can be carbon and the other nitrogen.
The term "alkenyl" refers to an unsubstituted hydrocarbon chain radical having from 2 to 10 carbon atoms having one or two olefinic double bonds, preferably one olefinic double bond. The term "C2-N alkenyl" refers to an alkenyl comprising 2 to N carbon atoms, where N is an integer having the following values: 3, 4, 5, 6, 7, 8, 9, or 10. The term "C2-10 alkenyl" refers to an alkenyl comprising 2 to 10 carbon atoms. The term "C2-4 alkenyl" refers to an alkenyl comprising 2 to 4 carbon atoms. Examples include, but are not limited to, vinyl, 1-propenyl, 2-propenyl (allyl) or 2-butenyl (crotyl). The term "halogenated alkenyl" refers to an alkenyl comprising at least one of F, Cl, Br, and I.
The term "alkyl" refers to an unbranched or branched chain, saturated, monovalent hydrocarbon residue containing 1 to 30 carbon atoms. The term "C1- M alkyl" refers to an alkyl comprising 1 to M carbon atoms, where M is an integer having the following values: 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30. The term "C1-4 alkyl" refers to an alkyl containing 1 to 4 carbon atoms. The term "lower alkyl" denotes a straight or branched chain hydrocarbon residue comprising 1 to 6 carbon atoms. "C1-20 alkyl" as used herein refers to an alkyl comprising 1 to 20 carbon atoms. "C1-K) alkyl" as used herein refers to an alkyl comprising 1 to 10 carbons. Examples of alkyl groups include, but are not limited to, lower alkyl groups include methyl, ethyl, propyl, /-propyl, «-butyl, /-butyl, r-butyl or pentyl, isopentyl, neopentyl, hexyl, heptyl, and octyl. The term (ar)alkyl or (heteroaryl)alkyl indicate the alkyl group is optionally substituted by an aryl or a heteroaryl group respectively.
The term "cycloalkyl" refers to an unsubstituted or substituted carbocycle, in which the carbocycle contains 3 to 10 carbon atoms; preferably 3 to 8 carbon atoms; more preferably 3 to 6 carbon atoms (i.e., lower cycloalkyls). Examples of cycloalkyl groups include, but are not limited to, cyclopropyl, 2- methyl-cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
The term "cycloalkyl alkyl" refers to an additionally unsubstituted or substituted alkyl substituted by a lower cycloalkyl. Examples of cycloalkyl alkyls include, but are not limited to, any one of methyl, ethyl, propyl, i-propyl, n-butyl, i-butyl, t-butyl or pentyl, isopentyl, neopentyl, hexyl, heptyl, and octyl that is substituted with cyclopropyl, 2-methyl-cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
The term "cycloheteroalkyl" refers to an unsubstituted or substituted heterocycle, in which the heterocycle contains 2 to 9 carbon atoms; preferably 2 to 7 carbon atoms; more preferably 2 to 5 carbon atoms. Examples of cycloheteroalkyls include, but are not limited to, aziridin-2-yl, N-C1-3-alkyl- aziridin-2-yl, azetidinyl, N-C1.3-alkyl-azetidin-m'-yl, pyrrolidin-m'-yl, N-Q-3- alkyl-pyrrolidin-m'-yl, piperidin-m'-yl, and N-C1^-alkyl-piperidin-m'-yl, where m' is 2, 3, or 4 depending on the cycloheteroalkyl. Specific examples of N-C1-3- alkyl-cycloheteroalkyls include, but are not limited to, N-methyl-aziridin-2-yl, N-methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-2-yl, N-methyl-piperidin-3-yl, and N-methyl-piperidin-4-yl. In the instance of R4, the point of attachment between the cycloheteroalkyl ring carbon and the oxygen occurs at any one of m'
The term "heterocycle" refers to an unsubstituted or substituted heterocycle containing carbon, hydrogen, and at least one of N, O, and S, where the C and N can be trivalent or tetravalent, i.e., sp2- or sp3-hybridized. Examples of heterocycles include, but are not limited to, aziridine, azetidine, pyrrolidine, piperidine, imidazole, oxazole, piperazine, etc. In the instance of piperazine, as related to R10 for NR'2, the corresponding opposite nitrogen atom of the piperazinyl is substituted by a lower alkyl represented by the following structure:
Figure imgf000016_0001
Preferably, the opposite nitrogen of the piperazinyl is substituted by a methyl group.
The term "halogenated alkyl" (or "haloalkyl") refers to an unbranched or branched chain alkyl comprising at least one of F, Cl, Br, and I. The term "C1-M haloalkyl" refers to an alkyl comprising 1 to M carbon atoms that comprises at least one of F, Cl, Br, and I, where M is an integer having the following values:
2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,
26, 27, 28, 29, or 30. "Cr3 haloalkyl" refers to a haloalkyl comprising 1 to 3 carbons and at least one of F, Cl, Br, and I. The term "halogenated lower alkyl"
(or "lower haloalkyl") refers to a haloalkyl comprising 1 to 6 carbon atoms and at least one of F, Cl, Br, and I. Examples include, but are not limited to, fluoromethyl, chloromethyl, bromomethyl, iodomethyl, difluoromethyl, dichloromethyl, dibromomethyl, diiodomethyl, trifluoromethyl, trichloromethyl, tribromomethyl, triiodomethyl, 1 -fluoroethyl, 1-chloroethyl, 1-bromoethyl, 1- iodoethyl, 2-fluoroethyl, 2-chloroethyl, 2-bromoethyl, 2-iodoethyl, 2,2- difluoroethyl, 2,2-dichloroethyl, 2,2-dibromomethyl, 2-2-diiodomethyl, 3- fluoropropyl, 3-chloropropyl, 3-bromopropyl, 2,2,2-trifluoroethyl or 1,1,2,2,2- pentafluoroethyl.
The term "alkynyl" refers to an unbranched or branched hydrocarbon chain radical having from 2 to 10 carbon atoms, preferably 2 to 5 carbon atoms, and having one triple bond. The term "C2-N alkynyl" refers to an alkynyl comprising 2 to N carbon atoms, where N is an integer having the following values: 3, 4, 5, 6, 7, 8, 9, or 10. The term "C C2-4 alkynyl" refers to an alkynyl comprising 2 to 4 carbon atoms. The term "C2-10 alkynyl" refers to an alkynyl comprising 2 to 10 carbons. Examples include, but are limited to, ethynyl, 1- propynyl, 2-propynyl, 1-butynyl, 2-butynyl or 3-butynyl.
The term "halogenated alkynyl" refers to an unbranched or branched hydrocarbon chain radical having from 2 to 10 carbon atoms, preferably 2 to 5 carbon atoms, and having one triple bond and at least one of F, Cl, Br, and I.
The term "cycloalkyl" refers to a saturated carbocyclic ring comprising 3 to 8 carbon atoms, i.e. cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl or cyclooctyl. The term "C3-7 cycloalkyl" as used herein refers to a cycloalkyl comprising 3 to 7 carbons in the carbocyclic ring.
The term "alkoxy" refers to an -O-alkyl group or an -O-cycloalkyl group, wherein alkyl and cycloalkyl are as defined above. Examples of -O-alkyl groups include, but are not limited to, methoxy, ethoxy, n-propyloxy, i- propyloxy, n-butyloxy, i-butyloxy, t-butyloxy. "Lower alkoxy" as used herein denotes an alkoxy group with a "lower alkyl" group as previously defined. "C1-10 alkoxy" refers to an-O-alkyl wherein alkyl is C1.io. Examples of -O-cycloalkyl groups include, but are not limited to, -O-c-propyl, -O-c-butyl, -O-c-pentyl, and -O-c-hexyl.
The term "halogenated alkoxy" refers to an -O-alkyl group in which the alkyl group comprises at least one of F, Cl, Br, and I. The term "halogenated lower alkoxy" refers to an -O-(lower alkyl) group in which the lower alkyl group comprises at least one of F, Cl, Br, and I.
The term "amino acid" includes naturally occurring and synthetic α, β γ or δ amino acids, and includes but is not limited to, amino acids found in proteins, i.e. glycine, alanine, valine, leucine, isoleucine, methionine, phenylalanine, tryptophan, proline, serine, threonine, cysteine, tyrosine, asparagine, glutamine, aspartate, glutamate, lysine, arginine and histidine. In a preferred embodiment, the amino acid is in the L-configuration. Alternatively, the amino acid can be a derivative of alanyl, valinyl, leucinyl, isoleucinyl, prolinyl, phenylalaninyl, tryptophanyl, methioninyl, glycinyl, serinyl, threoninyl, cysteinyl, tyrosinyl, asparaginyl, glutaminyl, aspartoyl, glutaroyl, lysinyl, argininyl, histidinyl, β-alanyl, β-valinyl, β-leucinyl, β-isoleucinyl, β-prolinyl, β- phenylalaninyl, β-tryptophanyl, β-methioninyl, β-glycinyl, β-serinyl, β- threoninyl, β-cysteinyl, β-tyrosinyl, β-asparaginyl, β-glutaminyl, β-aspartoyl, β- glutaroyl, β-lysinyl, β-argininyl or β-histidinyl. When the term amino acid is used, it is considered to be a specific and independent disclosure of each of the esters of α, β γ or δ glycine, alanine, valine, leucine, isoleucine, methionine, phenylalanine, tryptophan, proline, serine, threonine, cysteine, tyrosine, asparagine, glutamine, aspartate, glutamate, lysine, arginine and histidine in the D and L-configurations.
The term "aminoacyl" includes N,N-unsubstituted, N,N-monosubstituted, and N,N-disubstituted derivatives of naturally occurring and synthetic α, β γ or δ amino acyls, where the amino acyls are derived from amino acids. The amino- nitrogen can be substituted or unsubstituted. When the amino-nitrogen is substituted, the nitrogen is either mono- or di-substituted, where the substituent bound to the amino-nitrogen is a lower alkyl or an alkaryl. In the instance of its use for Y, the expression "O(aminoacyl)" is used. It is understood that the C3' carbon of the ribose is bound to the oxygen "O", which is then bound to the carbonyl carbon of the aminoacyl.
The terms "alkylamino" or "arylamino" refer to an amino group that has one or two alkyl or aryl substituents, respectively. The term "protected," as used herein and unless otherwise defined, refers to a group that is added to an oxygen, nitrogen, or phosphorus atom to prevent its further reaction or for other purposes. A wide variety of oxygen and nitrogen protecting groups are known to those skilled in the art of organic synthesis. Non- limiting examples include: C(O)-alkyl, C(O)Ph, C(O)aryl, CH3, CH2-alkyl, CH2- alkenyl, CH2Ph, CH2-aryl, CH2O-alkyl, CH2O-aryl, SO2-alkyl, SO2-aryl, tert- butyldimethylsilyl, tert-butyldiphenylsilyl, and 1,3-(I91,3,3- tetraisopropyldisiloxanylidene).
The term "aryl," as used herein, and unless otherwise specified, refers to substituted or unsubstituted phenyl (Ph), biphenyl, or naphthyl, preferably the term aryl refers to substituted or unsubstituted phenyl. The aryl group can be substituted with one or more moieties selected from among hydroxyl, F, Cl, Br, I, amino, alkylamino, arylamino, alkoxy, aryloxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, and phosphonate, either unprotected, or protected as necessary, as known to those skilled in the art, for example, as taught in T. W. Greene and P.G. M. Wuts, "Protective Groups in Organic Synthesis," 3rd ed., John Wiley & Sons, 1999.
The terms "alkaryl" or "alkylaryl" refer to an alkyl group with an aryl substituent, such as benzyl. The terms "aralkyl" or "arylalkyl" refer to an aryl group with an alkyl substituent.
The term "di(lower alkyl)amino-lower alkyl" refers to a lower alkyl substituted by an amino group that is itself substituted by two lower alkyl groups. Examples include, but are not limited to, (CH3)2NCH2, (CH3)2NCH2CH2, (CHa)2NCH2CH2CH2, etc. The examples above show lower alkyls substituted at the terminus carbon atom with an N,N-dimethyl-amino substituent. These are intended as examples only and are not intended to limit the meaning of the term "di(lower alkyl)amino-lower alkyl" so as to require the same. It is contemplated that the lower alkyl chain can be substituted with an N,N-di(lower alkyl)-amino at any point along the chain, e.g., CH3CH(N-(lower alkyl)2)CH2CH2.
The term "halo," as used herein, includes chloro, bromo, iodo and fluoro. The term "acyl" refers to a substituent containing a carbonyl moiety and a non-carbonyl moiety. The carbonyl moiety contains a double-bond between the carbonyl carbon and a heteroatom, where the heteroatom is selected from among O, N and S. When the heteroatom is N, the N is substituted by a lower alkyl. The non-carbonyl moiety is selected from straight, branched, and cyclic alkyl, which includes, but is not limited to, a straight, branched, or cyclic C1-20 alkyl, C1-10 alkyl, or lower alkyl; alkoxyalkyl, including methoxymethyl; aralkyl, including benzyl; aryloxyalkyl, such as phenoxymethyl; or aryl, including phenyl optionally substituted with halogen (F, Cl, Br, I), hydroxyl, C1 to C4 alkyl, or C1 to C4 alkoxy, sulfonate esters, such as alkyl or aralkyl sulphonyl, including methanesulfonyl, the mono, di or triphosphate ester, trityl or monomethoxytrityl, substituted benzyl, trialkylsilyl (e.g. dimethyl-t-butylsilyl) or diphenylmethylsilyl. When at least one aryl group is present in the non- carbonyl moiety, it is preferred that the aryl group comprises a phenyl group.
The term "lower acyl" refers to an acyl group in which the non-carbonyl moiety is lower alkyl.
The term "purine" or "pyrimidine" base includes, but is not limited to, adenine, N6-alkylpurines, N6-acylpurines (wherein acyl is C(O)(alkyl, aryl, alkylaryl, or arylalkyl), N6-benzylpurine, N6-halopurine, N6-vinylpurine, N6- acetylenic purine, N6-acyl purine, N6-hydroxyalkyl purine, N6- allcylaminopurine, N6-thioallcyl purine, N2-alkylpurines, N2-alkyl-6-thiopurines, thymine, cytosine, 5-fluorocytosine, 5-methylcytosine, 6-azapyrimidine, including 6-azacytosine, 2- and/or 4-mercaptopyrmidine, uracil, 5-halouracil, including 5-fluorouracil, C5-alkylpyrimidines, C5-benzylpyrimidines, C5- halopyrimidines, C5-vinylpyrimidine, C5-acetylenic pyrimidine, C5-acyl pyrimidine, C5-hydroxyalkyl purine, C5-amidopyrimidine, C5-cyanopyrimidine, ,C5-iodopyrimidine, C6-lodo-pyrimidine, C5-Br-vinyl pyrimidine, C6-Br-vinyl pyrimidine, C5-nitropyrimidine, C5-amino-pyrimidine, N2-alkylpurines, N2- alkyl-6-thiopurines, 5-azacytidinyl, 5-azauracilyl, triazolopyridinyl, imidazolopyridinyl, pyrrolopyrimidinyl, and pyrazolopyrimidinyl. Purine bases include, but are not limited to, guanine, adenine, hypoxanthine, 2,6- diaminopurine, and 6-chloropurine. Functional oxygen and nitrogen groups on the base can be protected as necessary or desired. Suitable protecting groups are well known to those skilled in the art, and include trimethylsilyl, dimethylhexylsilyl, t-butyldimethylsilyl, and r-butyldiphenylsilyl, trityl, alkyl groups, and acyl groups such as acetyl and propionyl, methanesulfonyl, and p- toluenesulfonyl.
The term "tautomerism" and "tautomers" have their accepted plain meanings.
The term "P*" means that the phosphorous atom is chiral and that it has a corresponding Cahn-Ingold-Prelog designation of "R" or "S" which have their accepted plain meanings. It is contemplated that compounds of the formula I are racemic because the chirality at phosphorous. Applicants contemplate use of the racemate and/or the resolved enantiomers. In some instances, an asterisk does not appear next to the phosphoroamidate phosphorous atom. In these instances, it is understood that the phosphorous atom is chiral and that one of ordinary skill understands this to be so unless the substituents bound to the phosphorous exclude the possibility of chirality at phosphorous, such as in P(O)Cl3.
DETAILED DESCRIPTION OF THE INVENTION
An aspect of the invention is directed to a compound, its salts, hydrates, solvates, crystalline forms, and the like represented by formula I:
Figure imgf000021_0001
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1 -, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, Q-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1 " is -OR1 or -N(Rr)2);
(b) R2 is hydrogen, C 1-10 alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms,
C(O)CR3aR3bNHR], where n is 2 to 4 and R1, R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C 1-10 alkyl, cycloalkyl, -(CH2)0(NR3')2, C-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR1 or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2,
CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C1.io alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), O(CMo acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl),
SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), O(C1-4 acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C14 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000024_0001
wherein
Z is N or CR12;
R7, R8,R9, R10, and Rnare independently H, F, Cl, Br, I, OH, OR', SH,
SR', NH2, NHR', NR'2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1 -C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1.io alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
R12 is H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR',
NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1 -C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R! 1 being hydrogen, R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
As can be appreciated from the structure represented by formula I above, there are myriad ways to express the several embodiments and aspects of each embodiment of the present invention. As seen below, the inventors have disclosed certain embodiments directed to the compound of formula I, each having several aspects, based on the identity of the modified purine or pyrimidine base. This is not intended to be an explicit or implicit admission that the three embodiments are independent or distinct nor should it be interpreted as such. Rather, it is intended to convey information so that the full breadth of the present invention can be understood. Furthermore, the following embodiments, and aspects thereof, are not meant to be limiting on the full breadth of the invention as recited by the structure of formula I.
A first embodiment of the invention is directed to a compound represented by formula 1-1 :
Figure imgf000025_0001
I l
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1 -, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C1-10 alkyl, or C!-6 alkyl, R1" is -OR or -N(Rr)2);
(b) R2 is hydrogen, C1-10 alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR32R313NHR1, where n is 2 to 4 and R1, R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C,-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, -
(CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1.io alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2); (d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-1o cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)-amino, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), O(C1-]0 acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2^ alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C 1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), O(C1-4 acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
(i) R7, R8,R9 are independently H, F, Cl, Br, I, OH, OR', SH, SR',
NH2, NHR', NR'2, lower alkyl, halogenated (F, Cl, Br, I) lower alkyl, lower alkenyl of C2-C6, CO2H, CO2R', CONH2, CONHR1, CONR'2, wherein R' is a C1- 20 alkyl; a C1- 20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl.
A first aspect of the first embodiment is directed to a compound represented by formula 1-1
wherein
(a) R1 is hydrogen, n-alkyl or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl;
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are independently (i) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3 " is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, - CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3- yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), or CH2SH and R3b is H;
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, CN, CH3, vinyl, OCH3, OCH2CH3, CH2OH, CH2(halo), such as CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R6 is H, R5 cannot be N3;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, vinyl, N3, CN, Cl, Br, F, I, O(C1-6 acyl),
O(C1-4 alkyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-4 haloalkyl, O(aminoacyl), O(C1-4 acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2^ alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, or N(C1-4 acyl)2;
(i) R7, R8,R9 are independently H, F, Cl, Br, I, OH, OR', SH, SR1, NH2, NHR', NR'2, lower alkyl, halogenated (F, Cl, Br, I) lower alkyl, lower alkenyl of C2-C6, CO2H, CO2R', CONH2, CONHR', CONR'2, wherein R' is a C- 2o alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl.
A second aspect of the first embodiment is directed to a compound represented by formula 1-1
wherein
(a) R1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a C1-3 alkyl, a C1-3 alkoxy, F, Cl, Br, I, nitro, cyano, and a C1-3 haloalkyl;
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are independently (i) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -
CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3- yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH,
CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), or CH2SH and R3b is H;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, rBu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, di(lower alkyl)amino-lower alkyl, or aminoacyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2(halo), such as CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R6 is H, R5 cannot be N3;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3, NH2, NHCH3, NH(vinyl), NH(acetyl), NH(C(O)CH3), N(CH3)2, N(C(O)CH3)2, or O(aminoacyl);
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2; and G) R9 is selected from among OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, OC(O)(C 1-20 alkyl), which include but are not limited to OC(O)(CH2)sCH3, NHC(O)(C 1-20 alkyl), which include but are not limited to NHC(O)(CH2)SCH3, and N(C(O)(CH2)SCH3)2, which include but is not limited to N(C(O)(CH2)SCH3)2, where s is an integer selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
A third aspect of the first embodiment is directed to a compound represented by formula 1-1
wherein
(a) R1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH3, OCH3, F, Cl, Br, I, nitro, cyano, and a CH3-qXq, where X is F, Cl, Br, or I, and q is 1-3;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H,
CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl or R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -
CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, lower haloalkyl, di(lower alkyl)amino-lower alkyl, or aminoacyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2(halo), such as CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R6 is H, R5 cannot be N3;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3,
NH2, NHCH3, NH(vinyl), NH(acetyl), NH(C(O)CH3), N(CH3)2, N(C(O)CH3)2, or O(aminoacyl);
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2, wherein R' is a C1-20 alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl'; and
(j) R9 is selected from among OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, OC(O)(C 1-20 alkyl), which include but are not limited to OC(O)(CH2)SCH3, NHC(O)(C 1-20 alkyl), which include but are not limited to NHC(O)(CH2)SCH3, and N(C(O)(CH2)SCH3)2, which include but is not limited to N(C(O)(CH2)SCH3)2, where s is an integer selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
A fourth aspect of the first embodiment is directed to a compound represented by formula 1-2
Figure imgf000033_0001
1-2
wherein
(a) R1 is hydrogen, methyl, ethyl, w-propyl, /-propyl, or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH3, OCH3, F, Cl, Br, I, nitro, cyano, and a CH3-qXq, where X is F, Cl, Br, or I, and q is 1-3;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H,
CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl or R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -
CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H;
(d) R4 is hydrogen, C1_io alkyl, C1-]O alkyl optionally substituted with a lower alkyl, alkoxy or halogen, Cμio haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I, with the provisos that when X is OH , base is cytosine and R6 is H, R5 cannot be N3;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3, NH2, NHCH3, NH(vinyl), NH(acetyl), NH(C(O)CH3), N(CH3)2, N(C(O)CH3)2, or O(aminoacy 1) ;
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2, wherein R' is a C1-20 alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl; and
G) R9 is selected from among OH, OCH3, SH, SCH3, NH2, NHCH3,
N(CH3)2, OC(O)(C 1-20 alkyl), which include but are not limited to OC(O)(CH2)SCH3, NHC(O)(C 1-20 alkyl), which include but are not limited to NHC(O)(CH2)SCH3, and and N(C(O)(CH2)SCH3, which include but is not limited to N(C(O)(CH2)SCH3)2, where s is an integer selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
A fifth aspect of the first embodiment is directed to a compound represented by formula 1-2
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, i-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3; (c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, lower haloalkyl, di(lower alkyl)amino-lower alkyl, or aminoacyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F,
Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3, or O(aminoacyl);
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2, wherein R1 is a C1-2O alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl; and
(j) R9 is selected from among OH, OCH3, SH, SCH3, NH2, NHCH3,
N(CH3)2, OC(O)(C1-20 alkyl), which include but are not limited to OC(O)(CH2)SCH3, NHC(O)(C1-20 alkyl), which include but are not limited to NHC(O)(CH2)SCH3, and N(C(O)(CH2)SCH3)2, which include but is not limited to N(C(O)(CH2)SCH3)2, where s is an integer selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
A sixth aspect of the first embodiment is directed to a compound represented by formula 1-2
wherein (a) R! is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, OMe, CN, CH2F, F, Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, or N3, OCH3, OC(O)CH3, or O(aminoacyl);
(i) R7 and R8 are independently H, F, Br, SCH3, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2CH3, CONH2, CONHCH3, or CON(CH3)2; and
O) R9 is selected from among OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, OC(O)(C1-20 alkyl), which include but are not limited to
OC(O)(CH2)sCH3, NHC(O)(C1-20 alkyl), which include but are not limited to NHC(O)(CH2)sCH3, and N(C(O)(CH2)SCH3)2, which include but is not limited to N(C(O)(CH2)SCH3)2, where s is an integer selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
A seventh aspect of the first embodiment is directed to a compound represented by formula 1-2
wherein (a) R! is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, rBu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, or N3;
(h) Y is OH, OCH3, OC(O)CH3, or O(aminoacyl);
(i) R7 and R8 are independently H, F, Br, SCH3, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2CH3, CONH2, CONHCH3, or CON(CH3)2; and
G) R9 is selected from among OH, OCH3, NH2, NHCH3, N(CH3)2, OC(O)(C1-20 alkyl), which include but are not limited to OC(O)(CH2)SCH3, NHC(O)(C1-20 alkyl), which include but are not limited to NHC(O)(CH2)SCH3, and N(C(O)(CH2)SCH3)2, which include but is not limited to
N(C(O)(CH2)SCH3)2, where s is an integer selected from among 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
An eighth aspect of the first embodiment is directed to a compound represented by formula 1-2
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl; (b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, or N3;
(h) Y is OH, OCH3, OC(O)CH3, or O(aminoacyl);
(i) R7 and R8 are independently H, F, Br, SCH3, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2CH3, CONH2, CONHCH3, or CON(CH3)2;
(j) R9 is selected from among OH, OCH3, NH2, NHCH3, N(CH3)2,
OC(O)(C1-20 alkyl), which include but are not limited to OC(O)(CH2)SCH3, NHC(O)(C1-20 alkyl), which include but are not limited to NHC(O)(CH2)SCH3, and N(C(O)(CH2)SCH3)2, which include but is not limited to N(C(O)(CH2)SCH3)2, where s is an integer selected from among 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, and 19.
A second embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula b above, wherein R1, R2, R3a, R3b, R4, R5, R6, X, Y, R7, and R8are defined in the Summary of the Invention section above.
A first aspect of the second embodiment is directed to a compound represented by formula 1-3
Figure imgf000039_0001
1-3
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C)-6 alkyl, -SO2N(Rr)2, COR!-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR' or -N(R'')2);
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3 - is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C-10 alkyl, or C1-6 alkyl, R3 is -OR1 or -N(R3')2);
(d) R4 is hydrogen, C1-1O alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN,
Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), O(C1-10 acyl), O(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, or N(C us acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C14 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), O(C1-4 acyl), O(C14 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C14 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C14 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C14 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C14 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, or N(C1-4 acyl)2;
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OR', SH, SR',
NH2, NHR, NR'2, lower alkyl, halogenated (F, Cl, Br, I) lower alkyl, lower alkenyl of C2-C6, CO2H, CO2R', CONH2, CONHR', CONR'2, wherein R' is a C1- 20 alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl.
The second aspect of the second embodiment is directed to a compound represented by formula 1-3
wherein
(a) R1 is hydrogen, n-alkyl or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1_6 haloalkyl;
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are independently (i) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2),, so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, - CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3- yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), or CH2SH and R3b is H;
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, Q-,0 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, CN, CH3, vinyl, OCH3, OCH2CH3, CH2OH, CH2(halo), such as CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, vinyl, N3, CN, Cl, Br, F, I, O(C1-6 acyl),
0(C1-4 alkyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C)-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(Q-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OR', SH, SR', NH2, NHR', NR'2, lower alkyl, halogenated (F, Cl, Br, I) lower alkyl, lower alkenyl of C2-C6, CO2H, CO2R', CONH2, CONHR1, C0NR'2, wherein R' is a Q- 20 alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl. The third aspect of the second embodiment is directed to a compound represented by formula 1-3
wherein
(a) R1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a C1-3 alkyl, a C1-3 alkoxy, F, Cl, Br, I, nitro, cyano, and a C1-3 haloalkyl;
(b) R2 is hydrogen, CH3, R3a or R3b and R2 together are (CH2)3 so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR33R313NHR1, where n is 2 to 4 and R1, R3a, and R3b are as defined herein;
(c) R3a and R3b are independently (i) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 3 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR1 or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, - CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3- yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, tBu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl; (e) R5 is H, CN, CH3, OCH3, CH2OH, CH2(halo), such as CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, halogen, NH2, or N3
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3, NH2, NHCH3, NH(vinyl), NH(acetyl), NH(C(O)CH3), N(CH3)2, N(C(O)CH3)2;
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2.
The fourth aspect of the second embodiment is directed to a compound represented by formula 1-3
wherein
(a) R1 is hydrogen, n-alkyl or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH3, OCH3,
F, Cl, Br, I, nitro, cyano, and a CH3-qXq, where X is F, Cl, Br, or I, and q is 1-3;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -
CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl or R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2(halo), such as CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3, NH2, NHCH3, NH(vinyl), NH(acetyl), NH(C(O)CH3), N(CH3)2, N(C(O)CH3)2;
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OCH3, SH,
SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2, wherein R' is a C1-20 alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl.
The fifth aspect of the second embodiment is directed to a compound represented by formula 1-4
Figure imgf000045_0001
1-4
wherein
(a) R is hydrogen, methyl, ethyl, n-propyl, /-propyl, or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH3, OCH3, F, Cl, Br, I, nitro, cyano, and a CH3-qXq, where X is F, Cl, Br, or I, and q is 1-3;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl or R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -
CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, N3, CH2CN, CH2N3, CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3, NH2, NHCH3, NH(vinyl), NH(acetyl), NH(C(O)CH3), N(CH3)2, N(C(O)CH3)2;
(i) R7 and R8 are independently H, F, Cl, Br, 1, OH, OCH3, SH, SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2, wherein R' is a C1-20 alkyl; a C1-2O cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl,
The sixth aspect of the second embodiment is directed to a compound represented by formula 1-4 wherein
(a) R1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3;
(i) R7 and R8 are independently H, F, Cl, Br, I, OH, OCH3, SH,
SCH3, NH2, NHCH3, N(CH3)2, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2H, CO2CH3, CONH2, CONHCH3, or CON(CH3)2, wherein R' is a C1-20 alkyl; a C1-20 cycloalkyl; a C2-C6 alkenyl, a C2-C6 alkynyl.
The seventh aspect of the second embodiment is directed to a compound represented by formula 1-4
wherein (a) R1 is hydrogen, methyl, ethyl, ^-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, OMe, CN, CH2F, F, Cl, Br, or I;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
(i) R7 and R8 are independently H, F, Br, SCH3, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2CH3, CONH2, CONHCH3, or CON(CH3)2;
The eighth aspect of the second embodiment is directed to a compound represented by formula 1-4
wherein
(a) R1 is hydrogen, methyl, ethyl, ^-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl; (d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R7 and R8 are independently H, F, Br, SCH3, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2CH3, CONH2, CONHCH3, or CON(CH3)2.
The ninth aspect of the second embodiment is directed to a compound represented by formula 1-4
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F; (g) X is H, OH, OCH3, F, or N3;
(h) Y is OH, OCH3, or OC(O)CH3;
(i) R7 and R8 are independently H, F, Br, SCH3, CH3, CH3-qXq, where X is F, Cl, Br, or I and q is 1 to 3, vinyl, CO2CH3, CONH2, CONHCH3, or CON(CH3)2.
A third embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula c above, wherein R1, R2, R3a, R3b, R4, R5, R6, X, Y, Z, R10, R11, and R12 are defined in the Summary of the Invention section above; with the proviso that R11 is not H.
A first aspect of the third embodiment is directed to a compound represented by formula 1-5
Figure imgf000050_0001
1-5
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR' or -N(Rr)2); (b) R2 is hydrogen or CH3;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxy 1, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)M so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is from H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, - CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), O(C1-!0 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl),
SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2^ alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C 1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), O(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C4 alkyl)2, N(C1-4 acyl)2;
(i) R10 and R1 ] are independently H, F, Cl, Br, I, OH, OR', SH, SR', NH2, NHR', NR'2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-Cό, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of Q- C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R11 is not NH2;
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR', NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'.
A second aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein
(a) R1 is hydrogen, methyl, ethyl, ^-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H,
CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl; (e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H.
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3;
(i) R10 and R1 ] are independently H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R1 ' is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R, CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R'.
A third aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl; (d) R4 is hydrogen, CH3, Et, !Pr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I; with the proviso that X is OH,
R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
(i) R10 and R1 x are independently H, F, Br, I, OH, OR1, NH2, NHR',
NR'2, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R11 is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR1, C0NR'2, CH=CHCO2H, or CH=CHCO2R'.
A fourth aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein
(a) R1 is hydrogen, methyl, ethyl, rc-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen; (c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 and R11 are independently H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R, with the proviso that when R10 is OH and R11 is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R'.
A fifth aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl; (b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 and R1 ' are independently H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R1 x is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
A sixth aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein (a) R1 is hydrogen, methyl, ethyl, w-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CHa)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H.
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3;
(i) R10 is NH2 and R11 is H, F, Br, I, OH, OR', NH2, NHR', NR2,
CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
C) Z is N or CR12; and R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
A seventh aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein
(a) R1 is hydrogen, methyl, ethyl, ^-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl -piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I; with the proviso that X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
(i) R10 is NH2 and R1 ' is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R1.
An eighth aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 is NH2 and R1 ! is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R, CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R1;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
Q) Z is N or CR12; and R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
A ninth aspect of the third embodiment is directed to a compound represented by formula 1-5
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, rBu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, or N-methyl-pyrrolidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 is NH2 and R1 ' is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R, CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and R" is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR1, NR2, NO2, lower alkyl of C1 -C6, CO2R, CONH2, CONHR, CONR2, CH=CHCO2H, or CH=CHCO2R'.
A tenth aspect of the third embodiment is directed to a compound represented by formula 1-6
Figure imgf000062_0001
1-6
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(Rr)2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1 - is -OR or -N(Rr)2);
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCORr, aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)H so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3- is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, Cl, Br, I, NH2, or N3; (h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), 0(C1-10 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl),
SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(CM8 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
(i) R10 and R1 J are independently H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R11 is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl Of C-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
An eleventh aspect of the third embodiment is directed to a compound represented by formula 1-6
wherein (a) R1 is hydrogen, methyl, ethyl, w-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-raethyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3;
(i) R10 and R1 ' are independently H, F, Br, I, OH, OR', NH2, NHR',
NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R11 is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
O) Z is N or CR12; and R12 is an H, halogen (including F, Cl, Br, I), OR1, NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
A twelvth aspect of the third embodiment is directed to a compound represented by formula 1-6
wherein
(a) R1 is hydrogen, methyl, ethyl, rø-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, rPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
(i) R10 and R1 ' are independently H, F, Br, I, OH, OR', NH2, NHR1, NR'2, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R!0 is OH and Rn is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and Q) Z is N or CR12; and
R12 is a H, halogen (including F, Cl, Br, I), OR1, NH2, NHR1, NR2, NO2, lower alkyl of C1 -C6, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R1.
A thirteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 and R1 ' are independently H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R11 is not NH2; wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
A fourteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F,
R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3; (i) R10 and R11 are independently H, F, Br, 1, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R', with the proviso that when R10 is OH and R11 is not NH2;
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R!2 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
A fifteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, Q-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(R1')2, COR1", and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR or -N(Rr)2);
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-!0 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)H so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3 - is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CHa)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C1-1O alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C1-10 haloalkyl, C3_io cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), 0(C1-10 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2^ alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-, 8 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), O(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
(i) R10 is NH2 and R1 ! is H, F, Br, I, OH, OR1, NH2, NHR', NR'2, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R'.
An sixteenth aspect of the third embodiment is directed to a compound represented by formula 1-6
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3; (c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F,
Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3,
OCH3;
(i) R10 is NH2 and R1 ' is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1 -C6, CO2R', CONH2, CONHR, C0NR'2, CH=CHCO2H, or CH=CHCO2R'.
A seventeenth aspect of the third embodiment is directed to a compound represented by formula 1-6 wherein
(a) R1 is hydrogen, methyl, ethyl, rc-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
(i) R10 is NH2 and R1 ' is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'.
An eighteenth aspect of the third embodiment is directed to a compound represented by formula 1-6 wherein
(a) R1 is hydrogen, methyl, ethyl, ^-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 is NH2 and R1 * is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'.
A ninteenth aspect of the third embodiment is directed to a compound represented by formula 1-6 wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 is NH2 and R11 are independently H, F, Br, I, OH, OR1, NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R';
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR1, NH2, NHR1, NR'2, NO2, lower alkyl of C-C6, CO2R', CONH2, CONHR, C0NR'2, CH=CHCO2H, or CH=CHCO2R'. A fourth embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula c above, where R11 is H and R2, R3a, R3b, R4, R5, R6, X, and Y are defined in the Summary of the Invention section above.
A first aspect of the fourth embodiment is directed to a compound represented by formula 1-7
Figure imgf000076_0001
1-7
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2CL6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR' or -N(Rr)2);
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are (i) independently selected from hydrogen, C)-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl,
CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-1O alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH),
CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3; (h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C 14 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), O(C1-]0 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C14 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl),
SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C14 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C14 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C14 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C14 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C14 acyl), N(C14 alkyl)2, N(C1-4 acyl)2;
(i) R10 is H, F, Cl, Br, I, OH, OR', SH, SR', NH2, NHR', NR2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and R12 is H, halogen (including F, Cl, Br, I), OH, OR', SH, SR1, NH2, NHR', NR2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R',
CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
A second aspect of the fourth embodiment is directed to a compound represented by formula 1-7
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H,
CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H.
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, halogen, NH2, or N3; (h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3;
(i) R10 is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R1, CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R1,
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R1 comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is H, halogen (including F, Cl, Br, I), OR1, NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
A third aspect of the third embodiment is directed to a compound represented by formula 1-7
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3 ;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I; with the proviso that X is OH,
R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F; (g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
(i) R10 is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is H, halogen (including F, Cl, Br, I), OR, NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
A fourth aspect of the fourth embodiment is directed to a compound represented by formula 1-7
wherein
(a) R1 is hydrogen, methyl, ethyl, ^-propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or diøower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F,
R5 cannot be H; (f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 and R1 ' H, F, Br, I, OH, OR1, NH2, NHR', NR'2, CO2R1, CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R1 comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
Q) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C,-C6, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
A fifth aspect of the fourth embodiment is directed to a compound represented by formula 1-7
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl; (e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
CO R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
(j) Z is N or CR12; and
R12 is H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'.
A sixth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
Figure imgf000083_0001
1-8
wherein (a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(R!')2, COR1", and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, Q.io alkyl, or C1-6 alkyl, R! - is -OR' or -N(Rr)2);
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are (i) independently selected from hydrogen, Cμio alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, Q-1O alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is O to 2, e is O to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CHa)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2); (d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C1-1O haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), 0(C1-10 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
(i) R10 is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2,
CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R', wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
G) Z is N or CR12; and
R12 is H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with Ru being hydrogen, R!2 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
A seventh aspect of the fourth embodiment is directed to a compound represented by formula 1-8
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN; (g) X is H, OH, F, OCH3, halogen, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3,
OCH3;
(i) R10 is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
O) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
An eighth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl , N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H; (f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
(i) R10 is H, F, Br, I, OH, OR1, NH2, NHR', NR'2, CO2R1, CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R1 is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
O) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
A ninth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, z-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl; (e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 is H, F, Br, I, OH, OR', NH2, NHR', NR'2, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
O) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR, NH2, NHR', NR'2, NO2, lower alkyl of C1-C6, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (Hi) -NO2.
A tenth aspect of the fourth embodiment is directed to a compound represented by formula 1-8
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(i) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
(i) R10 is H, F, Br, I, OH, OR1, NH2, NHR', NR'2, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is a lower alkyl, a lower cycloalkyl, or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
Q) Z is N or CR12; and
R12 is an H, halogen (including F, Cl, Br, I), OR', NH2, NHR1, NR'2, NO2, lower alkyl of C, -C6, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (Ui) -NO2.
A fifth embodiment of the invention is directed to a compound represented by formula I in which the base is a structure represented by formula d above, wherein R1 , R2, R3a, R3b, R4, R5, R6, X, and Y are defined in the Summary of the Invention section above.
The first aspect of the fifth embodiment is directed to a compound represented by formula 1-9
Figure imgf000091_0001
1-9
wherein
(a) R is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1 - is -OR' or -N(Rr)2);
(b) R2 is hydrogen or CH3;
(c) R3a and R3b are (i) independently selected from hydrogen, C1.io alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-1O alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3 - is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C-10 alkyl, C1-1O alkyl optionally substituted with a lower alkyl, alkoxy or halogen, C-10 haloalkyl, C3-io cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, di(lower alkyl)amino-lower alkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), Od-10 haloalkyl, O(aminoacyl), 0(C1-10 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2^ alkynyl), SO2(C2-4 alkenyl), OS(O)2(C,- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1 A alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2.
A second aspect of the fifth embodiment is directed to a compound represented by formula 1-9
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2,
CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H.
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, halogen, NH2, or N3; (h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3;
A third aspect of the fifth embodiment is directed to a compound represented by formula 1-9
wherein
(a) R1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, rPr, nPr, nBu, 2-butyl, fBu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I; with the proviso that X is OH,
R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 N3, OCH3, or OC(O)CH3;
A fourth aspect of the fifth embodiment is directed to a compound represented by formula 1-9
wherein
(a) R1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen; (c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
A fifth aspect of the fifth embodiment is directed to a compound represented by formula 1-9
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, rBu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F; (g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
A sixth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
Figure imgf000096_0001
1-10
wherein
(a) R1 is hydrogen, methyl, ethyl, ^-propyl, /-propyl, or a substituted or unsubstituted phenyl, where the substitutent of the substituted phenyl is at least one of a CH3, OCH3, F, Cl, Br, I, nitro, cyano, and a CH3-qXq, where X is F, Cl, Br, or I, and q is 1-3;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -
CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl or R3a is CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, - CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H; (d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, N3, CH2CN, CH2N3,
CH2NH2, CH2NHCH3, CH2N(CH3)2, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3;
(h) Y is OH, H, CH3, vinyl, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3,
NH2, NHCH3, NH(vinyl), NH(acetyl), NH(C(O)CH3), N(CH3)2, N(C(O)CH3)2;
A seventh aspect of the fifth embodiment is directed to a compound represented by formula 1-10
wherein
(a) R1 is hydrogen, methyl, ethyl, «-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -
CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'- OH)-Ph), CH2SH, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl; (e) R5 is H, CN, CH3, OCH3, CH2OH, CH2F, halogen, including F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OCH3, Cl, Br, I, NH2, or N3; and
(h) Y is OH, H, CH3, vinyl, NH2, N3, CN, Cl, Br, F, I, OC(O)CH3, OCH3.
An eighth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
wherein
(a) R1 is hydrogen, methyl, ethyl, n-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen or CH3;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, 1Pr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, CN, CH2F, F, Cl, Br, or I, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, F, OCH3, F, Cl, Br, I, NH2 or N3;
(h) Y is H, OH, CH3, F, Cl, Br, I, NH2 or N3, OCH3, or OC(O)CH3;
A ninth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
wherein
(a) R1 is hydrogen, methyl, ethyl, ^-propyl, /-propyl, phenyl, p-tolyl, p-bromo-phenyl, p-chloro-phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl;
(d) R4 is hydrogen, CH3, Et, iPr, nPr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3 -yl, N-methy l-pyrrolidin-3 -y 1, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3;
A tenth aspect of the fifth embodiment is directed to a compound represented by formula 1-10
wherein
(a) R1 is hydrogen, methyl, phenyl, p-bromo-phenyl, p-chloro- phenyl, p-fluorophenyl;
(b) R2 is hydrogen;
(c) R3a is H and R3b is H, CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, or lower cycloalkyl; (d) R4 is hydrogen, CH3, Et, iPr, "Pr, nBu, 2-butyl, 'Bu, benzyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, N-methyl-aziridin-2-yl, N- methyl-azetidin-3-yl, N-methyl-pyrrolidin-3-yl, N-methyl-pyrrolidin-4-yl, N- methyl-piperidin-4-yl, lower haloalkyl, or di(lower alkyl)amino-lower alkyl;
(e) R5 is H, with the provisos that when X is OH, R6 is CH3 or CH2F,
R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, or F;
(g) X is H, OH, OCH3, F, NH2 or N3;
(h) Y is OH, NH2, OCH3, or OC(O)CH3.
The following tables contain numeric identifiers associated with various substituent designators that should be viewed in light of the accompanying structure. These structures are contemplated species of the various aspects of the disclosed embodiments and are not intended to be limiting on full breadth of the contemplated compound represented by the structure of formula I. However, it is contemplated that any one of the exemplified nucleoside bases can be used in combination with any one of contemplated species that specify a particular combination of R1, R2, R3a, R3b, R4, R5, R6, X, and Y. In each of the presented tables, the phosphoramidate substituent containing the substituents R3a and R3b are depicted without reference to stereochemical structure {cf. structures 1-1, 1-3, 1-5, 1-7, and 1-9 above). It is contemplated that the compounds recited below embody compounds in which R3a projects toward the viewer while R3b projects away from the viewer (cf. structures 1-2, 1-4, 1-6, 1-8, and 1-10). Moreover, it is contemplated that the compounds recited below also embody compounds in which R3a projects away from the viewer while R3b projects towards the viewer. Not meant to be limiting, however, it is contemplated that preferred compounds are those in which R3a projects towards the viewer and R3b projects away from the viewer such that the natural L-amino acid (S)-configuration is presented. Additionally, the inventors recognize that the phosphorus atom of the phosphoramidate moiety is another source of chirality. Although the structures below do not specifically depict chirality at phosphorus, the inventors recognize that stereochemical configurations are possible such that in a staggered (or zig- zag) line structure the oxo-substitutent projects towards the viewer while the OR1 substitutent projects away from the viewer, and vice versa, i.e., where the Cahn-Ingold-Prelog stereochemical designation of phosphorous is either R or S. Therefore, the structures below include all possible stereochemical configurations possible for phosphorus.
Figure imgf000101_0001
II
Figure imgf000101_0002
Figure imgf000102_0001
Figure imgf000103_0001
Figure imgf000104_0001
Figure imgf000105_0001
Figure imgf000106_0001
Figure imgf000107_0001
Figure imgf000108_0001
Figure imgf000109_0001
Figure imgf000110_0001
Figure imgf000111_0001
Figure imgf000112_0001
Figure imgf000113_0001
Figure imgf000114_0001
Figure imgf000115_0001
Figure imgf000116_0001
Figure imgf000117_0001
Figure imgf000118_0001
Figure imgf000119_0001
Figure imgf000120_0001
Figure imgf000121_0001
Figure imgf000122_0001
Figure imgf000123_0001
Figure imgf000124_0003
Figure imgf000124_0001
III
Figure imgf000124_0002
Figure imgf000125_0001
Figure imgf000126_0001
Figure imgf000127_0001
Figure imgf000128_0001
Figure imgf000129_0001
Figure imgf000130_0001
Figure imgf000131_0001
Figure imgf000132_0001
Figure imgf000133_0001
Figure imgf000134_0001
Figure imgf000135_0001
Figure imgf000136_0001
Figure imgf000137_0001
Figure imgf000138_0001
Figure imgf000139_0001
Figure imgf000140_0001
Figure imgf000141_0001
Figure imgf000142_0001
Figure imgf000143_0001
Figure imgf000144_0001
Figure imgf000145_0001
Figure imgf000146_0001
Figure imgf000147_0002
Figure imgf000147_0001
IV
Figure imgf000147_0003
Figure imgf000148_0001
Figure imgf000149_0001
Figure imgf000150_0001
Ph
Figure imgf000151_0001
Figure imgf000152_0001
Figure imgf000153_0001
Figure imgf000154_0001
Figure imgf000155_0001
Figure imgf000156_0001
Figure imgf000157_0001
Figure imgf000158_0001
Figure imgf000159_0001
Figure imgf000160_0001
Figure imgf000161_0001
Figure imgf000162_0001
Figure imgf000163_0001
Figure imgf000164_0001
Figure imgf000165_0001
Figure imgf000166_0001
Figure imgf000167_0001
Figure imgf000168_0002
Figure imgf000168_0001
Figure imgf000169_0001
Figure imgf000170_0001
Figure imgf000171_0001
Figure imgf000172_0001
Figure imgf000173_0001
Figure imgf000174_0001
Figure imgf000175_0001
Figure imgf000176_0001
Figure imgf000177_0001
Figure imgf000178_0001
Figure imgf000179_0001
Figure imgf000180_0001
Figure imgf000181_0001
Figure imgf000182_0001
Figure imgf000183_0001
Figure imgf000184_0001
Figure imgf000185_0001
Figure imgf000186_0001
Figure imgf000187_0001
Figure imgf000188_0002
Figure imgf000188_0001
VI
Figure imgf000188_0003
Figure imgf000189_0001
Figure imgf000190_0001
Figure imgf000191_0001
Figure imgf000192_0001
Figure imgf000193_0001
Figure imgf000194_0001
Figure imgf000195_0001
Figure imgf000196_0001
Figure imgf000197_0001
Figure imgf000199_0001
Figure imgf000200_0001
Figure imgf000201_0001
Figure imgf000202_0001
Figure imgf000203_0001
Figure imgf000204_0001
Figure imgf000205_0002
Figure imgf000205_0001
Figure imgf000205_0003
Figure imgf000206_0001
Figure imgf000207_0001
Figure imgf000208_0001
Figure imgf000209_0001
Figure imgf000210_0001
Figure imgf000211_0001
Figure imgf000212_0001
Figure imgf000213_0001
Figure imgf000214_0001
Figure imgf000215_0001
Figure imgf000216_0001
Figure imgf000217_0001
Figure imgf000218_0001
Figure imgf000219_0001
Figure imgf000220_0001
Figure imgf000221_0001
Figure imgf000222_0001
Figure imgf000223_0001
Figure imgf000224_0001
Figure imgf000225_0001
Figure imgf000226_0001
Figure imgf000227_0001
Figure imgf000228_0002
Figure imgf000228_0001
VIII
Figure imgf000228_0003
Figure imgf000229_0001
Figure imgf000230_0001
Figure imgf000231_0001
Figure imgf000232_0001
Figure imgf000233_0001
Figure imgf000234_0001
Figure imgf000235_0001
Figure imgf000236_0001
Figure imgf000237_0001
Figure imgf000238_0001
Figure imgf000239_0001
Figure imgf000240_0001
Figure imgf000241_0001
Figure imgf000242_0001
8
Figure imgf000243_0001
Figure imgf000244_0001
Figure imgf000245_0001
Figure imgf000246_0001
Figure imgf000247_0001
IX
Figure imgf000247_0002
Figure imgf000248_0001
Figure imgf000249_0001
Figure imgf000250_0001
Figure imgf000251_0001
Figure imgf000252_0001
Figure imgf000253_0001
Figure imgf000254_0001
Figure imgf000255_0001
Figure imgf000256_0001
Figure imgf000257_0001
Figure imgf000258_0001
Figure imgf000259_0001
Figure imgf000260_0001
Figure imgf000261_0001
Figure imgf000262_0001
Figure imgf000263_0001
Figure imgf000264_0001
X
Figure imgf000264_0002
Figure imgf000265_0001
Figure imgf000266_0001
Figure imgf000267_0001
Figure imgf000268_0001
Figure imgf000269_0001
Figure imgf000270_0001
Figure imgf000271_0001
Figure imgf000272_0001
Figure imgf000273_0001
Figure imgf000274_0001
Figure imgf000275_0001
Figure imgf000276_0001
Figure imgf000277_0001
Figure imgf000278_0001
Figure imgf000279_0001
Figure imgf000280_0001
Figure imgf000281_0001
XI
Figure imgf000281_0002
Figure imgf000282_0001
Figure imgf000283_0001
Figure imgf000284_0001
Figure imgf000285_0001
Figure imgf000286_0001
Figure imgf000287_0001
Figure imgf000288_0001
Figure imgf000289_0001
Figure imgf000290_0001
Figure imgf000291_0001
Figure imgf000292_0001
Figure imgf000293_0001
Figure imgf000294_0001
Figure imgf000295_0001
Figure imgf000296_0001
Figure imgf000297_0001
Figure imgf000298_0001
XII
Figure imgf000298_0002
Figure imgf000299_0001
Figure imgf000300_0001
Figure imgf000301_0001
Figure imgf000302_0001
Figure imgf000303_0001
Figure imgf000304_0001
Figure imgf000305_0001
Figure imgf000306_0001
Figure imgf000307_0001
Figure imgf000308_0001
Figure imgf000309_0001
Figure imgf000310_0001
Figure imgf000311_0001
Figure imgf000312_0001
Figure imgf000313_0001
Figure imgf000314_0001
Figure imgf000315_0001
xπi
Figure imgf000315_0002
Figure imgf000316_0001
Figure imgf000317_0001
Figure imgf000318_0001
Figure imgf000319_0001
Figure imgf000320_0001
Figure imgf000321_0001
Figure imgf000322_0001
Figure imgf000322_0002
3
Figure imgf000323_0001
Figure imgf000324_0001
323
Figure imgf000325_0001
Figure imgf000326_0001
Figure imgf000327_0001
Figure imgf000328_0001
327
Figure imgf000329_0001
328
Figure imgf000330_0001
Figure imgf000331_0001
Figure imgf000332_0001
XIV
Figure imgf000332_0002
331
Figure imgf000333_0001
Figure imgf000334_0001
Figure imgf000335_0001
Figure imgf000336_0001
Figure imgf000337_0001
Figure imgf000338_0001
Figure imgf000339_0001
Figure imgf000340_0001
Figure imgf000341_0001
Figure imgf000342_0001
Figure imgf000343_0001
Figure imgf000344_0001
Figure imgf000345_0001
Figure imgf000346_0001
Figure imgf000346_0002
Figure imgf000347_0001
Figure imgf000348_0001
Figure imgf000349_0001
XV
Figure imgf000349_0002
Figure imgf000350_0001
Figure imgf000351_0001
Figure imgf000352_0001
Figure imgf000353_0001
Figure imgf000354_0001
Figure imgf000355_0001
Figure imgf000356_0001
Figure imgf000357_0001
Figure imgf000358_0001
Figure imgf000359_0001
Figure imgf000360_0001
Figure imgf000361_0001
Figure imgf000362_0001
Figure imgf000363_0001
Figure imgf000364_0001
Figure imgf000365_0001
Figure imgf000366_0001
XVI
Figure imgf000366_0002
Figure imgf000367_0001
Figure imgf000368_0001
Figure imgf000369_0001
Figure imgf000370_0001
Figure imgf000371_0001
Figure imgf000372_0001
Figure imgf000373_0001
Figure imgf000374_0001
Figure imgf000375_0001
Figure imgf000376_0001
Figure imgf000377_0001
Figure imgf000378_0001
Figure imgf000379_0001
Figure imgf000380_0001
Figure imgf000381_0001
Figure imgf000382_0001
Figure imgf000383_0001
xvπ
Figure imgf000383_0002
Figure imgf000384_0001
Figure imgf000385_0001
Figure imgf000386_0001
Figure imgf000387_0001
Figure imgf000388_0001
Figure imgf000389_0001
Figure imgf000390_0001
Figure imgf000391_0001
Figure imgf000392_0001
Figure imgf000393_0001
Figure imgf000394_0001
Figure imgf000395_0001
Figure imgf000396_0001
Figure imgf000397_0001
Figure imgf000398_0001
Figure imgf000398_0002
Figure imgf000398_0003
Figure imgf000399_0001
R3b
Figure imgf000400_0001
X xvm
Figure imgf000400_0002
Figure imgf000401_0001
Figure imgf000402_0001
Figure imgf000403_0001
Figure imgf000404_0001
Figure imgf000405_0001
Figure imgf000406_0001
Figure imgf000407_0001
Figure imgf000408_0001
Figure imgf000409_0002
Figure imgf000409_0001
Figure imgf000410_0001
Ph
Figure imgf000411_0001
Figure imgf000412_0001
Figure imgf000413_0001
Figure imgf000414_0001
Figure imgf000415_0001
Figure imgf000416_0001
Figure imgf000417_0001
Figure imgf000418_0001
Figure imgf000419_0001
Figure imgf000419_0002
Figure imgf000419_0003
Figure imgf000420_0001
*R2 and R3b joined together by (CH2)3 to form five-membered ring.
Figure imgf000421_0002
CO2R4 R6
Figure imgf000421_0001
X
Figure imgf000421_0003
Figure imgf000422_0001
Figure imgf000423_0001
Figure imgf000424_0001
Figure imgf000425_0001
Figure imgf000426_0001
Figure imgf000427_0001
Figure imgf000428_0001
Figure imgf000429_0001
Figure imgf000430_0001
Figure imgf000431_0001
Figure imgf000432_0001
Figure imgf000433_0001
Figure imgf000434_0001
Figure imgf000435_0001
Figure imgf000436_0001
Figure imgf000437_0001
Figure imgf000438_0001
Figure imgf000439_0001
Figure imgf000440_0001
XX
Figure imgf000440_0002
Figure imgf000441_0001
Figure imgf000442_0001
Figure imgf000443_0001
Figure imgf000444_0001
Figure imgf000445_0001
Figure imgf000446_0001
Figure imgf000447_0001
Figure imgf000448_0001
Figure imgf000449_0001
Figure imgf000450_0001
Figure imgf000451_0001
Figure imgf000452_0001
Figure imgf000453_0001
Figure imgf000454_0001
Figure imgf000455_0001
Figure imgf000456_0001
Figure imgf000457_0002
Figure imgf000457_0001
XXI
Figure imgf000458_0001
Figure imgf000459_0001
Figure imgf000460_0001
Figure imgf000461_0001
Figure imgf000462_0001
Figure imgf000463_0001
Figure imgf000464_0001
Figure imgf000465_0001
Figure imgf000466_0001
Figure imgf000467_0001
Figure imgf000468_0001
Figure imgf000469_0001
Figure imgf000470_0001
Figure imgf000471_0001
Figure imgf000472_0001
Figure imgf000473_0001
Figure imgf000474_0002
Figure imgf000474_0001
XXII
Figure imgf000475_0001
Figure imgf000476_0001
Figure imgf000477_0001
Figure imgf000478_0001
Figure imgf000479_0001
Figure imgf000480_0001
Figure imgf000481_0001
Figure imgf000482_0001
Figure imgf000483_0001
Figure imgf000484_0001
Figure imgf000485_0001
Figure imgf000486_0001
Figure imgf000487_0001
Figure imgf000488_0001
Figure imgf000489_0001
Figure imgf000490_0001
Figure imgf000491_0002
Figure imgf000491_0001
xxiπ
Figure imgf000491_0003
Figure imgf000492_0001
Figure imgf000493_0001
Figure imgf000494_0001
Figure imgf000495_0001
Figure imgf000496_0001
Figure imgf000497_0001
Figure imgf000498_0001
Figure imgf000499_0001
Figure imgf000500_0001
Figure imgf000501_0001
Figure imgf000502_0001
Figure imgf000503_0001
Figure imgf000504_0001
Figure imgf000505_0001
Figure imgf000506_0001
Figure imgf000507_0001
Figure imgf000508_0002
Figure imgf000508_0001
XXIV
Figure imgf000508_0003
Figure imgf000509_0001
Figure imgf000510_0001
Figure imgf000511_0001
Figure imgf000512_0001
Figure imgf000513_0001
Figure imgf000514_0001
Figure imgf000515_0001
Figure imgf000516_0001
Figure imgf000517_0001
Figure imgf000518_0001
Figure imgf000519_0001
Figure imgf000520_0001
Figure imgf000521_0001
Figure imgf000522_0001
Figure imgf000523_0001
Figure imgf000524_0001
Figure imgf000525_0002
O
R3b
CO2R'
Figure imgf000525_0001
X
XXV
Figure imgf000525_0003
Figure imgf000526_0001
Figure imgf000527_0001
Figure imgf000528_0001
.
Figure imgf000529_0001
Figure imgf000530_0001
Figure imgf000531_0001
Figure imgf000532_0001
Figure imgf000533_0001
Figure imgf000534_0001
Figure imgf000535_0001
Figure imgf000536_0001
Figure imgf000537_0001
Figure imgf000538_0001
Figure imgf000539_0001
Figure imgf000540_0001
Figure imgf000541_0001
Figure imgf000542_0002
Figure imgf000542_0001
XXVI
Figure imgf000542_0003
Figure imgf000543_0001
Figure imgf000544_0001
Figure imgf000545_0001
Figure imgf000546_0001
Figure imgf000547_0001
Figure imgf000548_0001
Figure imgf000549_0001
Figure imgf000550_0001
Figure imgf000551_0001
Figure imgf000552_0001
Figure imgf000553_0001
Figure imgf000554_0001
Figure imgf000555_0001
Figure imgf000556_0001
Figure imgf000557_0001
Figure imgf000558_0001
Figure imgf000559_0002
Figure imgf000559_0001
XXVII
Figure imgf000559_0003
Figure imgf000560_0001
Figure imgf000561_0001
Figure imgf000562_0001
Figure imgf000563_0001
Figure imgf000564_0001
Figure imgf000565_0001
Figure imgf000566_0001
Figure imgf000567_0001
Figure imgf000568_0001
Figure imgf000569_0001
Figure imgf000570_0001
Figure imgf000571_0001
Figure imgf000572_0001
Figure imgf000573_0001
Figure imgf000574_0001
Figure imgf000575_0001
Figure imgf000576_0002
Figure imgf000576_0001
xxvm
Figure imgf000576_0003
Figure imgf000577_0001
Figure imgf000578_0001
Figure imgf000579_0001
Figure imgf000580_0001
Figure imgf000581_0001
Figure imgf000582_0001
Figure imgf000583_0001
Figure imgf000584_0001
Figure imgf000585_0001
Figure imgf000586_0001
Figure imgf000587_0001
Figure imgf000588_0001
Figure imgf000589_0001
Figure imgf000590_0001
Figure imgf000591_0001
Figure imgf000592_0001
Figure imgf000593_0002
Figure imgf000593_0001
XXIX
Figure imgf000593_0003
Figure imgf000594_0001
Figure imgf000595_0001
Figure imgf000596_0001
Figure imgf000597_0001
Figure imgf000598_0001
Figure imgf000599_0001
Figure imgf000600_0001
Figure imgf000601_0001
Figure imgf000602_0001
Figure imgf000603_0001
Figure imgf000604_0001
Figure imgf000605_0001
Figure imgf000606_0001
Figure imgf000607_0001
Figure imgf000608_0001
Figure imgf000609_0001
Figure imgf000610_0002
Figure imgf000610_0001
XXX
Figure imgf000610_0003
Figure imgf000611_0001
Figure imgf000612_0001
Figure imgf000613_0001
Figure imgf000614_0001
Figure imgf000615_0001
Figure imgf000616_0001
Figure imgf000617_0001
Figure imgf000618_0001
Figure imgf000619_0001
Figure imgf000620_0001
Figure imgf000621_0001
Figure imgf000622_0001
Figure imgf000623_0001
Figure imgf000624_0001
Figure imgf000625_0001
Figure imgf000626_0001
Figure imgf000627_0002
Figure imgf000627_0001
XXXI
Figure imgf000627_0003
Figure imgf000628_0001
Figure imgf000629_0001
Figure imgf000630_0001
Figure imgf000631_0001
Figure imgf000632_0001
Figure imgf000633_0001
Figure imgf000634_0001
Figure imgf000635_0001
Figure imgf000636_0001
Figure imgf000637_0001
Figure imgf000638_0001
Figure imgf000639_0001
Figure imgf000640_0001
Figure imgf000641_0001
Figure imgf000642_0001
Figure imgf000643_0001
Figure imgf000644_0002
Figure imgf000644_0001
xxxπ
Figure imgf000644_0003
Figure imgf000645_0001
Figure imgf000646_0001
Figure imgf000647_0001
Figure imgf000648_0001
Figure imgf000649_0001
Figure imgf000650_0001
Figure imgf000651_0001
Figure imgf000652_0001
Figure imgf000653_0001
Figure imgf000654_0001
Figure imgf000655_0001
Figure imgf000656_0001
Figure imgf000657_0001
Figure imgf000658_0001
Table XXXII-45.
Figure imgf000659_0001
Figure imgf000660_0001
DOSAGE, ADMINISTRATION, AND USE
A sixth embodiment of the present invention is directed to a composition for the treatment of any of the viral agents disclosed herein said composition comprising a pharmaceutically acceptable medium selected from among an excipient, carrier, diluent, and equivalent medium and a compound, that is intended to include its salts (acid or basic addition salts), hydrates, solvates, and crystalline forms can be obtained, represented by formula I.
It is contemplated that the formulation of the sixth embodiment can contain any of the compounds contemplated in any of the aspects of the first, second, third, fourth, and fifth embodiments or those specifically recited in the tables above or exemplified herein, either alone or in combination with another compound of the present invention.
The compounds of the present invention may be formulated in a wide variety of oral administration dosage forms and carriers. Oral administration can be in the form of tablets, coated tablets, hard and soft gelatin capsules, solutions, emulsions, syrups, or suspensions. Compounds of the present invention are efficacious when administered by suppository administration, among other routes of administration. The most convenient manner of administration is generally oral using a convenient daily dosing regimen which can be adjusted according to the severity of the disease and the patient's response to the antiviral medication.
A compound or compounds of the present invention, as well as their pharmaceutically acceptable salts, together with one or more conventional excipients, carriers, or diluents, may be placed into the form of pharmaceutical compositions and unit dosages. The pharmaceutical compositions and unit dosage forms may be comprised of conventional ingredients in conventional proportions, with or without additional active compounds and the unit dosage forms may contain any suitable effective amount of the active ingredient commensurate with the intended daily dosage range to be employed. The pharmaceutical compositions may be employed as solids, such as tablets or filled capsules, semisolids, powders, sustained release formulations, or liquids such as suspensions, emulsions, or filled capsules for oral use; or in the form of suppositories for rectal or vaginal administration. A typical preparation will contain from about 5% to about 95% active compound or compounds (w/w). The term "preparation" or "dosage form" is intended to include both solid and liquid formulations of the active compound and one skilled in the art will appreciate that an active ingredient can exist in different preparations depending on the desired dose and pharmacokinetic parameters.
The term "excipient" as used herein refers to a compound that is used to prepare a pharmaceutical composition, and is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes excipients that are acceptable for veterinary use as well as human pharmaceutical use. The compounds of this invention can be administered alone but will generally be administered in admixture with one or more suitable pharmaceutical excipients, diluents or carriers selected with regard to the intended route of administration and standard pharmaceutical practice.
A "pharmaceutically acceptable salt" form of an active ingredient may also initially confer a desirable pharmacokinetic property on the active ingredient which were absent in the non-salt form, and may even positively affect the pharmacodynamics of the active ingredient with respect to its therapeutic activity in the body. The phrase "pharmaceutically acceptable salt" of a compound as used herein means a salt that is pharmaceutically acceptable and that possesses the desired pharmacological activity of the parent compound. Such salts include: (1) acid addition salts, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like; or formed with organic acids such as glycolic acid, pyruvic acid, lactic acid, malonic acid, malic acid, maleic acid, fumaric acid, tartaric acid, citric acid, 3-(4-hydroxybenzoyl)benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethane-disulfonic acid, 2- hydroxyethanesulfonic acid, benzenesulfonic acid, 4-chlorobenzenesulfonic acid, 2-naphthalenesulfonic acid, 4-toluenesulfonic acid, camphorsulfonic acid, lauryl sulfuric acid, gluconic acid, glutamic acid, salicylic acid, muconic acid, and the like or (2) basic addition salts formed with the conjugate bases of any of the inorganic acids listed above, wherein the conjugate bases comprise a cationic component selected from among Na+, K+, Mg2+, Ca2+, and NHgR 4-g +, in which R is a C1-3 alkyl and g is a number selected from among 0, 1, 2, 3, or 4. It should be understood that all references to pharmaceutically acceptable salts include solvent addition forms (solvates) or crystal forms (polymorphs) as defined herein, of the same acid addition salt.
Solid form preparations include powders, tablets, pills, capsules, suppositories, and dispersible granules. A solid carrier may be one or more substances which may also act as diluents, flavoring agents, solubilizers, lubricants, suspending agents, binders, preservatives, tablet disintegrating agents, or an encapsulating material. In powders, the carrier generally is a finely divided solid which is a mixture with the finely divided active component. In tablets, the active component generally is mixed with the carrier having the necessary binding capacity in suitable proportions and compacted in the shape and size desired. Suitable carriers include but are not limited to magnesium carbonate, magnesium stearate, talc, sugar, lactose, pectin, dextrin, starch, gelatin, tragacanth, methylcellulose, sodium carboxymethylcellulose, a low melting wax, cocoa butter, and the like. Solid form preparations may contain, in addition to the active component, colorants, flavors, stabilizers, buffers, artificial and natural sweeteners, dispersants, thickeners, solubilizing agents, and the like.
Liquid formulations also are suitable for oral administration include liquid formulation including emulsions, syrups, elixirs and aqueous suspensions. These include solid form preparations which are intended to be converted to liquid form preparations shortly before use. Emulsions may be prepared in solutions, for example, in aqueous propylene glycol solutions or may contain emulsifying agents such as lecithin, sorbitan monooleate, or acacia. Aqueous suspensions can be prepared by dispersing the finely divided active component in water with viscous material, such as natural or synthetic gums, resins, methylcellulose, sodium carboxymethylcellulose, and other well known suspending agents.
The compounds of the present invention may be formulated for administration as suppositories. A low melting wax, such as a mixture of fatty acid glycerides or cocoa butter is first melted and the active component is dispersed homogeneously, for example, by stirring. The molten homogeneous mixture is then poured into convenient sized molds, allowed to cool, and to solidify.
The compounds of the present invention may be formulated for vaginal administration. Pessaries, tampons, creams, gels, pastes, foams or sprays containing in addition to the active ingredient such carriers as are known in the art to be appropriate.
Suitable formulations along with pharmaceutical carriers, diluents and expcipients are described in Remington: The Science and Practice of Pharmacy 1995, edited by E. W. Martin, Mack Publishing Company, 19th edition, Easton, Pennsylvania, which is hereby incorporated by reference. The compounds of the present invention can also be encapsulated in liposomes, such as those disclosed in U.S. Patent Nos. 6,180,134, 5,192,549, 5,376,380, 6,060,080, 6,132,763, each of which is incorporated by reference. A skilled formulation scientist may modify the formulations within the teachings of the specification to provide numerous formulations for a particular route of administration without rendering the compositions of the present invention unstable or compromising their therapeutic activity.
The modification of the present compounds to render them more soluble in water or other vehicle, for example, may be easily accomplished by minor modifications (e.g., salt formulation), which are well within the ordinary skill in the art. It is also well within the ordinary skill of the art to modify the route of administration and dosage regimen of a particular compound in order to manage the pharmacokinetics of the present compounds for maximum beneficial effect in patients.
A seventh embodiment of the present invention is directed to a use of the compound represented by formula I in the manufacture of a medicament for the treatment of any condition the result of an infection by any one of the following viral agents: hepatitis C virus, West Nile virus, yellow fever virus, dengue virus, rhinovirus, polio virus, hepatitis A virus, bovine viral diarrhea virus and Japanese encephalitis virus.
The term "medicament" means a substance used in a method of treatment and/or prophylaxis of a subject in need thereof, wherein the substance includes, but is not limited to, a composition, a formulation, a dosage form, and the like, comprising the compound of formula I. It is contemplated that the compound of the use of the compound represented by formula I in the manufacture of a medicament for the treatment of any of the antiviral conditions disclosed herein of the seventh embodiment can be any of the compounds contemplated in any of the aspects of the first, second, third, fourth, fifth embodiments or those specifically recited in the tables above or exemplified herein, either alone or in combination with another compound of the present invention. A medicament includes, but is not limited to, any one of the compositions contemplated by the sixth embodiment of the present invention.
A eighth embodiment of the present invention is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering a therapeutically effective amount of the compound represented by formula I to the subject.
A first aspect of the eighth embodiment is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering a therapeutically effective of at least two or more different compounds falling within the scope of the compound represented by formula I to the subject.
A second aspect of the eighth embodiment is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises alternatively or concurrently administering a therapeutically effective of at least two compounds falling within the scope of the compound represented by formula I to the subject.
It is intended that a subject in need thereof is one that has any condition the result of an infection by any of the viral agents disclosed herein, which includes, but is not limited to, hepatitis C virus, West Nile virus, yellow fever virus, dengue virus, rhinovirus, polio virus, hepatitis A virus, bovine viral diarrhea virus or Japanese encephalitis virus, flaviviridae viruses or pestiviruses or hepaciviruses or a viral agent causing symptoms equivalent or comparable to any of the above-listed viruses.
The term "subject" means a mammal, which includes, but is not limited to, cattle, pigs, sheep, chicken, turkey, buffalo, llama, ostrich, dogs, cats, and humans, preferably the subject is a human. It is contemplated that in the method of treating a subject thereof of the sixth embodiment can be any of the compounds contemplated in any of the aspects of the first, second, and third embodiments or those specifically recited in the tables above, either alone or in combination with another compound of the present invention.
The term "therapeutically effective amount" as used herein means an amount required to reduce symptoms of the disease in an individual. The dose will be adjusted to the individual requirements in each particular case. That dosage can vary within wide limits depending upon numerous factors such as the severity of the disease to be treated, the age and general health condition of the patient, other medicaments with which the patient is being treated, the route and form of administration and the preferences and experience of the medical practitioner involved. For oral administration, a daily dosage of between about 0.1 and about 10 g, including all values in between, such as 0.25, 0.5, 0.75, I5 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8, 8.5, 9, and 9.5, per day should be appropriate in monotherapy and/or in combination therapy. A preferred daily dosage is between about 0.5 and about 7.5 g per day, more preferred 1.5 and about 6.0 g per day. Generally, treatment is initiated with a large initial "loading dose" to rapidly reduce or eliminate the virus following by a decreasing the dose to a level sufficient to prevent resurgence of the infection. One of ordinary skill in treating diseases described herein will be able, without undue experimentation and in reliance on personal knowledge, experience and the disclosures of this application, to ascertain a therapeutically effective amount of the compounds of the present invention for a given disease and patient.
Therapeutic efficacy can be ascertained from tests of liver function including, but not limited to protein levels such as serum proteins (e.g., albumin, clotting factors, alkaline phosphatase, aminotransferases (e.g., alanine transaminase, aspartate transaminase), 5 '-nucleosidase, γ- glutaminyltranspeptidase, etc.), synthesis of bilirubin, synthesis of cholesterol, and synthesis of bile acids; a liver metabolic function, including, but not limited to, carbohydrate metabolism, amino acid and ammonia metabolism.
Alternatively the therapeutic effectiveness may be monitored by measuring HCV-RNA. The results of these tests will allow the dose to be optimized.
A third aspect of the eighth embodiment, is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering to the subject a therapeutically effective of a compound represented by formula I and a therapeutically effective amount of another antiviral agent; wherein the administration is concurrent or alternative. It is understood that the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours. Examples of "another antiviral agents" include, but are not limited to: HCV NS3 protease inhibitors (see WO 2008010921, WO 2008010921, EP 1881001, WO 2007015824, WO 2007014925, WO 2007014926, WO 2007014921, WO 2007014920, WO 2007014922, US 2005267018, WO 2005095403, WO 2005037214, WO 2004094452, US 2003187018, WO 200364456, WO 2005028502, and WO 2003006490); HCV NS5B Inhibitors (see US 2007275947, US20072759300, WO2007095269, WO 2007092000, WO 2007076034, WO 200702602, US 2005-98125, WO 2006093801, US 2006166964, WO 2006065590, WO 2006065335, US 2006040927, US 2006040890, WO 2006020082, WO 2006012078, WO 2005123087, US 2005154056, US 2004229840, WO 2004065367, WO 2004003138, WO 2004002977, WO 2004002944, WO 2004002940, WO 2004000858, WO 2003105770, WO 2003010141, WO 2002057425, WO 2002057287, WO 2005021568, WO 2004041201, US 20060293306, US 20060194749, US 20060241064, US 6784166, WO 2007088148, WO 2007039142, WO
2005103045, WO 2007039145, WO 2004096210, and WO 2003037895); HCV NS4 Inhibitors (see WO 2007070556 and WO 2005067900); HCV NS5a Inhibitors (see US 2006276511, WO 2006120252, WO 2006120251, WO 2006100310, WO 2006035061); Toll-like receptor agonists (see WO 2007093901); and other inhibitors (see WO 2004035571, WO 2004014852, WO 2004014313, WO 2004009020, WO 2003101993, WO 2000006529).
A fourth aspect of the eighth embodiment, is directed to a method of treatment in a subject in need thereof said method comprises alternatively or concurrently administering a therapeutically effective of a compound represented by formula I and another antiviral agent to the subject. It is understood that the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours.
A fifth aspect of the eighth embodiment, is directed to a method of treatment and/or prophylaxis in a subject in need thereof said method comprises administering to the subject a therapeutically effective of at least one compound represented by formula I and a therapeutically effective amount of another antiviral agent; wherein the administration is concurrent or alternative. It is understood that the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours.
A sixth aspect of the eighth embodiment, is directed to a method of treatment in a subject in need thereof said method comprises alternatively or concurrently administering a therapeutically effective of at least one compound represented by formula I and another antiviral agent to the subject. It is understood that the time between alternative administration can range between 1-24 hours, which includes any sub-range in between including, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, and 23 hours.
It is contemplated that the another antiviral agent includes, but is not limited to interferon -α , interferon-β, pegylated interferon-α, ribavirin, levovirin, viramidine, another nucleoside HCV polymerase inhibitor, a HCV non-nucleoside polymerase inhibitor, a HCV protease inhibitor, a HCV helicase inhibitor or a HCV fusion inhibitor. When the active compound or its derivative or salt are administered in combination with another antiviral agent the activity may be increased over the parent compound. When the treatment is combination therapy, such administration may be concurrent or sequential with respect to that of the nucleoside derivatives. "Concurrent administration" as used herein thus includes administration of the agents at the same time or at different times. Administration of two or more agents at the same time can be achieved by a single formulation containing two or more active ingredients or by substantially simultaneous administration of two or more dosage forms with a single active agent.
It will be understood that references herein to treatment extend to prophylaxis as well as to the treatment of existing conditions. Furthermore, the term "treatment" of a HCV infection, as used herein, also includes treatment or prophylaxis of a disease or a condition associated with or mediated by HCV infection, or the clinical symptoms thereof.
PROCESS FOR PREPARATION
An ninth embodiment of the present invention is directed to a process for preparing the compound of formula I, which comprises reacting a suitably substituted phosphochloridate compound 4 with a nucleoside analog 5
Figure imgf000669_0001
4 5
wherein the substituents R1, R2, R3a, R3b, R4, R5, X, Y, R6, and base have their meanings as disclosed in the Detailed Description of the Invention and X' is a leaving group, such as Cl, Br, I, tosylate, mesylate, trifluoroacetate, trifluorosulfonate, pentafluorophenoxide, p-NO2-phenoxide, or other commonly used leaving groups as disclosed in Advanced Organic Chemistry by March, Fourth Edition. Leaving groups and methods that can be used to effect the formation of a phosphoramidate nucleoside conjugate are found in US 20060142238 and WO 2007095269. Preferably, the leaving group is Cl.
This reaction is performed in an anhydrous aprotic solvent such tetrahydrofuran, dioxane, or both tetrahydrofuran and dioxane, or any functional equivalent thereof, with tetrahydrofuran being the preferred solvent. The reaction is typically initiated at a temperature range from -78°C to 4O°C with the preferred reaction temperature being between O°C and room temperature. The nucleoside is first stirred with a base (5 to 12 equivalents) such as N- methylimidazole, collidine, pyridine, 2,6-lutidine, 2, 6-'Bu-pyridine, etc. a tertiary amine base, such as triethylamine, diisopropylethylamine, etc., or an alkyl Grignard reagent, such as tBuMgCl, tBuMgBr, MeMgCl, MeMgBr, etc. The phosphorochloridate (3-10 equivalents) is dissolved in the reaction solvent and added to the mixture of the nucleoside and base. The reaction is then allowed to stir over a period of time at a temperature between room temperature and 4O°C for a period of 30 min to 24 hr. with the preferred reaction temperature being room temperature and time being 24 hr. The solvent is removed from the reaction mixture and the product is purified by chromatography on silica gel.
A tenth embodiment of the present invention is directed to a product obtained by a process which comprises reacting a suitably substituted phosphochloridate compound 4 with a nucleoside analog 5
Figure imgf000670_0001
wherein the substituents R1, R2, R3a, R3b, R4, R5, X, Y, R6, X', and base have their meanings as disclosed in the Detailed Description of the Invention.
This reaction can be performed in an anhydrous aprotic solvent or other suitable solvent, such as tetrahydrofuran, dioxane, or a mixture of tetrahydrofuran and dioxane, with tetrahydrofuran being the preferred solvent. The reaction is typically initiated at a temperature range from -78°C to 4O°C with the preferred reaction temperature being between O°C and room temperature. The nucleoside is first stirred with a base (5 to 12 equivalents) such as N- methylimidazole, a tertiary amine base or tButyl Magnesium Chloride. A phosphorochloridate (3-10 equivalents (or suitable "phosphoro-(leaving group)- date")) is dissolved in the reaction solvent and added to the mixture of the nucleoside and base. The reaction is then allowed to stir over a period of time at a temperature between room temperature and 4O°C for a period of 30 min to 24 hr. with the preferred reaction temperature being room temperature and time being 24 hr. The solvent is removed from the reaction mixture and the product is purified by chromatography on silica gel.
Compounds and Preparation
Phosphoramidate compounds of the present invention can be prepared by condensation of a nucleoside analog 5 with a suitably substituted phosphochloridate compound 4 (Scheme 1). The nucleoside analog is made by conventional procedures disclosed in any one of U.S. Published Application Nos. 2005/0009737, 2006/0199783, 2006/0122146, and 2007/0197463, each of which is incorporated by reference in its entirety.
Disclosed 1H-NMR values were recorded on a Varian AS-400 instrument. Mass spectral data were obtain using either a Micromass- Quattromicro API or a Waters Acquity.
Thus, by way of example only, a suitably substituted phenol can be reacted with phosphorus oxychloride (1) to afford an aryloxy phosphorodichloridate 2 (see Example 1) which is subsequently treated with a acid addition salt of an α-amino acid ester in the presence of TEA to afford an aryloxy phosphorochloridate 4. This arylalkoxy-amino acid phosphoramidate is reacted with the nucleoside analog to provide the product I (for procedure see, e.g., C. McGuigan et al. Antiviral Res. 1992 17:311-321; D. Curley et al. Antiviral Res. 1990 14:345-356; McGuigan et al. Antiviral Chem. Chemother 1990 l(2):107-113). Scheme 1
Figure imgf000672_0001
Figure imgf000672_0002
The preparation of nucleoside phosphoramidates requires reacting an appropriately substituted phosphochloridate with a nucleoside containing a free 5'-hydroxyl moiety. In cases where only one hydroxyl group is present, preparation of the phosphoramidate usually proceeds smoothly when the phosphochloridate is reacted with the desired nucleoside. In cases where the nucleoside contains more than one free hydroxyl group, preparation of the appropriately protected nucleoside might be required. Silyl, acetonide or other alcohol protecting groups known in the art might be warranted for protection of the sugar moiety. For protection of the nucleoside base, protecting a free amino group may require amidine protection strategy.
Condensation of the phosphochloridate can be carried out on the unprotected nucleoside. Since the 5'-OH group of a nucleoside is much less hindered than the 3'-OH group, selective phosphoramidation is possible under carefully controlled conditions. After condensation to form a protected phosphoramidate nucleoside, deprotection to obtain the free phosphoramidate nucleoside can be carried out using standard protocols for nucleic acid chemistry. In many cases, the desired product is readily separated from the starting material using column chromatography on silica gel. The synthetic scheme is summarized in Scheme 1. A further understanding of the disclosed embodiments will be appreciated by consideration of the following examples, which are only meant to be illustrative, and not limit the disclosed invention.
EXAMPLE l
General Procedure for Preparation of phosphorodichloridates
Figure imgf000673_0001
1
A solution of the appropriate phenol R1 -OH (leq) and triethylamine (1 eq.) in anhydrous ether was added dropwise to a stirred solution of phosphoryl trichloride 1 (leq) at O °C over a period of 3 hours under nitrogen. Then the temperature was warmed to room temperature, and the reaction was stirred overnight. The triethylamine salt was quickly removed with suction filtration and the filtrate concentrated in vacuo to dryness to afford 2 as an oil which was used without further purification.
EXAMPLE 2
General Procedure for Preparation of phosphorochloridates
Figure imgf000673_0002
A" = Cr or Ts"
A solution of triethylamine (2eq) in anhydrous dichloromethane was added dropwise to a solution of aryloxy-phosphodichloridate 2 (1 eq) and the appropriate amino ester 3 ( 1 eq) in anhydrous dichloromethane with vigorous stirring at -78 °C over a period of 30 to 120 minutes. Then the reaction temperature was allowed to warm to room temperature and stirred over night. Solvent was removed. The residue was washed with ethyl ether and filtered, the filtrate was dried over reduced pressure to give 4.
EXAMPLE 3
General Procedures for nucleoside phosphoramidate derivatives
Figure imgf000674_0001
I
A solution of the appropriate phosphorochloridate 4 (6.5 equivalents) in anhydrous tetrahydrofuran (THF) was added to a mixture of nucleoside 5 (1 equivalent) and N-methylimidazole (8 equivalents) in anhydrous THF with vigorous stirring at room temperature and the reaction mixture was stirred overnight. The solvent was removed in vacuo and the crude was purified by column chromatography and/or preparative thin layer chromatography to give I.
EXAMPLE 4
Preparation of 2'-deoxy-2'-fluoro-2'-C-methyluridine
Figure imgf000675_0001
Figure imgf000675_0002
2'-Deoxy-2'-fluoro-2'-C-methylcytidine (1.Og, 1 eq ) (Clark, J., et al., J. Med. Chem., 2005, 48, 5504-5508) was dissolved in 10 ml of anhydrous pyridine and concentrated to dryness in vacuo. The resulting syrup was dissolved in 20 ml of anhydrous pyridine under nitrogen and cooled to O°C with stirring. The brown solution was treated with benzoyl chloride (1.63g, 3eq) dropwise over 10 min. The ice bath was removed and stirring continued for 1.5h whereby thin-layer chromatography (TLC) showed no remaining starting material. The mixture was quenched by addition of water (0.5 ml) and concentrated to dryness. The residue was dissolved in 50 mL of dichloromethane (DCM) and washed with saturated NaHCO3 aqueous solution and H2O. The organic phase was dried over NaSO4 and filtered, concentrated to dryness to give N4,3',5'-tribenzoyl-2'- Deoxy-2'-fluoro-2'-C-methylcytidine (2.0 g, Yield: 91 %).
N4,3I,5'-tribenzoyl-2'-Deoxy-2'-fluoro-2'-C-methylcytidine (2.Og, 1 eq ) was refluxed in 80% aqueous AcOH overnight. After cooling and standing at room temperature (15 °C), most of the product precipitated and then was filtered through a sintered funnel. White precipitate was washed with water and co- evaporated with toluene to give a white solid. The filtrate was concentrated and co-evaporated with toluene to give additional product which was washed with water to give a white solid. Combining the two batches of white solid gave 1.5Og of 3',5'-dibenzoyl-2I-Deoxy-2'-fluoro-2'-C-methyluridine (Yield: 91%).
To a solution of 3',5'-dibenzoyl-2'-Deoxy-2'-fluoro-2'-C-methyluridine (1.5 g, leq) in MeOH (10 mL) was added a solution of saturated ammonia in MeOH (2OmL). The reaction mixture was stirred at 0 °C for 30 min, and then warmed to room temperature slowly. After the reaction mixture was stirred for another 18 hours, the reaction mixture was evaporated under reduced pressure to give the residue, which was purified by column chromatography to afford pure compound 2'-deoxy-2'-fluoro-2'-C-methyluridine (500 mg, Yield: 60 %).
EXAMPLE 5
Preparation of 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy- alanyl phosphate)
Figure imgf000676_0001
Phenyl methoxyalaninyl phosphorochloridate (I g, 6.5 eq ) dissolved in 3 mL of THF was added to a mixture of 2'-Deoxy-2'-fluoro-2'-C-methyluridine (0.15 g,l eq) and N-methylimidazole (0.3 g, 8 eq) in 3 mL THF with vigorous stirring at room temperature, then the reaction was stirred overnight. Solvent was removed by reduced pressure. The resulting crude product was dissolved in methanol purified by prep-HPLC on a YMC 25x30X2 mm column using a water / acetonitrile gradient elution mobile phase. The acetonitrile and water were removed under reduced pressure to give the desired product (50.1 mg, 15.6%). 1H NMR (DMSO-J6) δ 1.20-1.27 (m, 6H), 3.58 (d, J= 16.0 Hz, 3H), 3.75-3.92 (m, 2H), 4.015-4.379 (m, 2H), 5.54 (t, J= 10.2 Hz, 1H), 5.83-5.91 (m, 1H), 6.00-6.16 (m, 1H), 7.18 (d, J= 8.0 Hz, 2H), 7.22 (s, 1H), 7.35 (t, J= 4.4 Hz, 2H), 7.55 (s, 1H), 11.52 (s, 1H); MS, m/e 502 (M+l)+.
EXAMPLE 6
Preparation of 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy- valyl phosphate)
Figure imgf000677_0001
Phenyl methoxy-valyl phosphorochloridate (0.6 g, 3.6 eq ) dissolved in 3 rnL of THF was added to a mixture of 2'-Deoxy-2'-fluoro-2'-C-methyluridine (0.15 g,l eq) and N-methylimidazole (0.44 g, 9 eq) in 3 mL THF with vigorous stirring at room temperature, then the reaction was stirred overnight. Solvent was removed by reduced pressure. The resulting crude product was dissolved in methanol purified by prep-HPLC on a YMC 25x30X2 mm column using a water / acetonitrile gradient elution mobile phase. The acetonitrile and water were removed under reduced pressure to give the desired product (60 mg, 20%). 1H NMR (DMSO-J6) δ 0.74-0.847 (m, 6H), 1.20-1.28 (m, 3H), 1.89-1.92 (m, 1H), 3.50-3.54 (m, 1H), 3.58 (d, J= 10.4Hz, 3H), 3.72-3.95 (m, 1H), 4.03-4.05 (m, 1H), 4.23-4.43 (m, 2H), 5.56 (t, J= 16.0 Hz, 1H), 5.85-5.92 (m, 1H), 6.01-6.07 (m, 1H), 7.16-7.21 (m, 3H), 7.37 (t, J= 8 Hz, 2H), 7.55-7.60 (m, 1H), 11.52 (s, 1H); MS, m/e 530 (M+l)+. EXAMPLE 7
Preparation of 2'-Deoxy-2'-fluoro-2'-C-methyIuridine 5'-(4-bromophenyl methoxy-valyl phosphate)
Figure imgf000678_0001
4-Bromophenyl methoxy-valyl phosphorochloridate (1 g, 3.4 eq ) dissolved in 3 niL of THF was added to a mixture of 2'-deoxy-2'-fluoro-2'-C- methyluridine (0.2 g,l eq) and N-methylimidazole (0.35 g, 6 eq) in 3 mL THF with vigorous stirring at room temperature, then the reaction was stirred overnight. Solvent was removed by reduced pressure. The resulting crude product was dissolved in methanol purified by prep-HPLC on a YMC 25x30X2 mm column using a water / acetonitrile gradient elution mobile phase. The acetonitrile and water were removed reduced pressure to give the desired product (120 mg, 26%). 1H NMR (DMSO-J6) δ 0.72-0.82 (m, 6H), 1.19-1.26 (m, 3H), 1.86-1.92 (m, 1H), 3.48-3.50 (m, 1H), 3.56 (d, J= 12.0 Hz, 3H), 3.72-3.89 (m, 1H), 3.96-4.03 (m, 1H), 4.22-4.37 (m, 2H), 5.54-5.60 (m, 1H), 5.85-5.91 (m, 1H), 5.98-6.13 (m, 1H), 7.15 (d, J= 8.0 Hz, 2H), 7.49-7.56 (m, 3H), 11.53 (s, 1H); MS, m/e 608 (M+l)+.
EXAMPLE 8
Preparation of 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy-alanyl phosphate)
Figure imgf000679_0001
4-Bromophenyl methoxy-alanyl phosphorochloridate (0.6 g, 5 eq ) dissolved in 3 mL of THF was added to a mixture of 2'-deoxy-2'-fluoro-2t-C- methyluridine (0.15 g,l eq)and N-methylimidazole (0.3 g, 7.8 eq) in 3 mL THF with vigorous stirring at room temperature, then the reaction was stirred overnight. Solvent was removed by reduced pressure. The resulting crude product was dissolved in methanol purified by prep-HPLC on a YMC 25x30X2 mm column using a water / acetonitrile gradient elution mobile phase. The acetonitrile and water were removed under reduced pressure to give the desired product (40 mg, 12 %); 1U NMR (DMSO-J6) δ 1.20-1.26 (m, 6H), 3.57 (d, J = 2.8 Hz, 3H), 3.84 (s, 1H), 3.97-4.03 (m, 1H), 4.21-4.25 (m, 1H), 4.33-4.37 (m, 2H), 5.54-5.60 (m, 1H), 5.83-5.89 (m, 1H), 5.98-6.19 (m, 1H), 7.16 (t, J= 10.2 Hz, 2H), 7.52-7.57 (m, 3H), 11.52 (s, 1 H); MS, m/e 580(M+l)+.
EXAMPLE 9
Preparation of N4-(iV,N-dimethylformaniidinyl)-2'-deoxy-2'-fluoro-2'-C- methylcytidine
Figure imgf000679_0002
2'-Deoxy-2'-fluoro-2'-C-methylcytidine (500 mg, 1.9 mmol) was stirred with dimethylformamide dimethyl acetal in DMF (10 mL). The resulting mixture was stirred at room temperature overnight. After solvent removal the crude product was used for next step without further purification.
EXAMPLE 10
Preparation of 2'-Deoxy-2'-fluoro-2'-C-methyIcytidine 5'-(phenyl methoxy- alanyl phosphate)
Figure imgf000680_0001
Phenyl methoxyalaninyl phosphorochloridate (0.6 g, 6 eq ) dissolved in 3 mL of THF was added to a mixture of N4-(N,N-dimethylforraamidinyl)-2'- deoxy-2'-fluoro-2'-C-methylcytidine (0.15 g,l eq) and Ν-methylimidazole (0.3 g, 7.8 eq) in 3 mL THF with vigorous stirring at room temperature, then the reaction was stirred overnight. Solvent was removed by reduced pressure. The resulting crude product was dissolved in methanol purified by prep-HPLC on a YMC 25x30X2 mm column using a water / acetonitrile gradient elution mobile phase. The acetonitrile and water were removed under reduced pressure to give the desired product (62 mg, 20.6%). 1H ΝMR (DMSO-J6) δ 1.16 (d, J= 23.2 Hz, 3H), 1.22 (d, J= 7.2 Hz, 3H), 3.56 (S, 3H), 3.69-3.75 (d, J= 25.6 Hz, 1H), 3.82-3.86 (m, 1H), 3.96-3.98 (m, 1H), 4.21-4.34 (m, 2H), 5.68 (d, J= 7.2 Hz, 1H), 5.75-5.77 (m, 1H), 6.07-6.16 (m, 1H), 7.15-7.19 (m, 3H), 7.2 (d, J= 9.2 Hz, 2H), 7.39 (t, J= 7.8 Hz, 2H), 7.48 (d, J= 9.2 Hz, 1H); MS, m/e 501(M+l)+.
EXAMPLE 11
Preparation of 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(4-bromophenyl methoxy-valyl phosphate)
Figure imgf000681_0001
4-Bromophenyl methoxy-valyl phosphorochloridate (1.0 g, 3.4 eq. ) dissolved in 3 mL of THF was added to a mixture of N4-(N,N- dimethylformamidinyl)-2'-deoxy-2'-fluoro-2'-C-methylcytidine (0.2 g,l eq.) and Ν-methylimidazole (0.35 g, 6 eq.) in 3 mL THF with vigorous stirring at room temperature, then the reaction was stirred overnight. Solvent was removed by reduced pressure. The resulting crude product was dissolved in methanol purified by prep-HPLC on a YMC 25x30X2 mm column using a water / acetonitrile gradient elution mobile phase. The acetonitrile and water were removed under reduced pressure to give the desired product as a white solid (59 mg, 13%); 1H NMR (DMSO-J6) δ 0.74-0.83 (m, 6H), 1.12-1.20 (m, 3H), 1.89- 1.92 (m, 1H), 3.49-3.51 (m, 1H), 3.55 (s, 3H), 3.59-3.68 (m, 1H), 3.72-383 (m, 1H), 4.21-4.39 (m, 2H), 5.70-5.72 (m, 1H), 5.76-5.83 (m, 1H), 6.04-6.16 (m, 1H), 7.15 (d, J = 13.0 Hz, 2H), 7.26 (s, 1H), 7.33 (s, 1H), 7.46-7.55 (m, 1H), 7.56 (d, J = 4.4 Hz, 2H) ; MS, m/e 607 (M+l)+.
EXAMPLE 12
Preparation of 2'-deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy- valyl phosphate)
Figure imgf000682_0001
Phenyl methoxy-valyl phosphorochloridate (0.6 g, 6 eq ) dissolved in 3 mL of THF was added to a mixture of N4-(N,N-dimethylformamidinyl)-2!- deoxy-2'-fluoro-2'-C-methylcytidine (0.15 g,l eq) and Ν-methylimidazole (0.3 g, 7.8 eq) in 3 mL THF with vigorous stirring at room temperature, then the reaction was stirred overnight. Solvent was removed by reduced pressure The resulting crude product was dissolved in methanol purified by prep-HPLC on a YMC 25x30X2 mm column using a water / acetonitrile gradient elution mobile phase. The acetonitrile and water were removed under reduced pressure to give the desired product as a white solid (86 mg, 42.9 %). 1H ΝMR (DMSO-cfe) δ 0.72-0.80 (m, 6H), 1.09-1.18 (m, 3H), 1.87-1.92 (m, 1H), 3.47-3.51 (m, 1H), 3.58 (s, 3H), 3.71-3.75 (m, 1H), 3.97 (t, J= 11.2 Hz, 1H), 4.22-4.37 (m, 2H), 5.70 (d, J= 8.0 Hz, 1H), 5.76-5.84 (m, 1H), 6.01-6.15 (m, 1H), 7.13-7.18 (m, 3H), 7.27 (s, 2H), 7.34 (d, J= 4.0 Hz, 2H), 7.46-7.50 (m, 1H); MS, m/e 529 (M+l)+. EXAMPLES
Example numbers 13-54 and 56-66 are prepared using similar procedures described for examples 5-8. The example number, compound identification, and NMR/MS details are shown below:
Figure imgf000683_0001
Figure imgf000683_0002
Figure imgf000684_0001
Figure imgf000685_0001
Figure imgf000686_0001
Figure imgf000687_0001
Figure imgf000688_0001
The purification procedure by Prep-HPLC:
Crude products were dissolved in methanol. Injection volumes of these solutions were 5 mL.
The preparative HPLC system including 2 sets of Gilson 306 pumps, a Gilson 156 UV/Vis detector, a Gilson 215 injector & fraction collector, with Unipoint control software. A Ymc 25x30x2 mm column was used. The mobile phase was HPLC grade water (A), and HPLC grade acetonitrile (B). Fractions were collected into 100* 15mm glass tubes.
HPLC gradient is shown in Table 1. Once the gradient was selected, acetonitrile solution was injected into HPLC system, and then fractions collected according to UV peaks. After the separation, each glass tubes were run MS test to collect the desired compounds. The fractions with target MS were combined in a well-weighted flask. Most of acetonitrile was removed under reduce pressure and the remaining solution was freeze-dried to give desired compound.
Table 1:
Figure imgf000689_0005
Preparation of Example 66 Scheme
Figure imgf000689_0001
NH3ΠΉF
900C, overnight
Figure imgf000689_0002
JL
Figure imgf000689_0003
Figure imgf000689_0004
66
Preparation of compound (b) To a solution of compound a (1 g, 2.69 mmol) in anhydrous THF (30 mL)
was added dropwise 1 M solution of LiAl(OBu-J)3H in THF (2.69 mL, 2.69 mmol) at -20 °C. The reaction mixture was stirred for 2-3 h at the same temperature. EtOAc (100 mL) was added followed by saturated NH4Cl solution (10 mL) and reaction mixture was slowly brought to room temperature. Reaction mixture was extracted with EtOAc and washed with IN HCl and water.
Combined organic phase was evaporated to give 0.8 g of crude compound b as transparent oil, which was used directly for next reaction. Preparation of compound (d) To a solution of compound b (0.8 g, 2.1mmol), compound c (0.45 g, 2.5 mmol) and Ph3P (0.56 g, 2.1 mmol) in anhydrous THF (20 mL) under nitrogen atmosphere was added DEAD (1.8 mL). The reaction mixture was stirred at room temperature overnight. The reaction solution was concentrated under reduce pressure. The residue was separated by preparative layer chromatography (hexanes:EtOAc = 3:1) to give crude compound d (0.8 g). The crude compound d was used to the next step without further purification. Preparation of compound (e)
Compound d (0.8 g, 1.57 mmol) was dissolved in THF (2 mL) and THF saturated with ammonia (5 mL) was then added to this solution. The reaction mixture was heated to 90 °C overnight. After 18 hours, the solution was cooled to room temperature by ice water, then the solvent was removed under reduced pressure and the residue was purified by column to give compound e (0.75 g) for the next step. Preparation of compound (f) Compound e (0.5 g, 1.01 mmol) was dissolved in methanol (2 mL) and methanol was saturated with ammonia (5 mL) was then added to this solution. The reaction mixture was stirred at room temperature overnight. After 18 hours, the solvent was removed under reduced pressure and the residue was purified by column to give crude compound f (0.15 g) for the next step. Preparation of compound (i)
A solution of triethylamine (1.07 g, 10.6 mmol) in anhydrous dichloromethane (15 mL) was added dropwise to a solution of compound g (1.16 g, 5.3 mmol) and compound h (1.31 g, 5.3 mmol) in dichloromethane (10 mL) with vigorous stirring at -78 °C over a period of 2 hours. After completion of addition, the reaction temperature was allowed to warm to room temperature gradually and stirred over night. Then the solvent was removed under vacuum and anhydrous ether 20 mL was added and the precipitated salt was filtered and the precipitate was washed with ether. The combined organic phase was concentrated to give the colorless oil of compound i (1.0 g).
Preparation of Compound 66 To a solution of compound j (0.1 g, 0.35 mmol) dissolved in 10 mL of anhydrous THF, stirred and added 0.4g NMI till the solution became clear, added compound i (0.8 g, 2.89 mmol) in 10 mL THF dropwise, stirred at r.t. overnight. Compound purity and identification was confirmed by LCMS. The solvent was evaporated and purified by Prep-HPLC to afford 66. (25 mg, Yield: 13.6%). 1H NMR (DMSO-J6) δ 1.08 (d, J= 22.8 Hz, 3H), 1.17-1.24 (m, 3H), 3.50-3.52 (m, 3H), 3.78-3.83 (m, 1H), 4.10-4.13 (m, 1H), 4.24-4.44 (m, 2H), 5.85-5.92 (m, 1H), 6.01-6.11 (m,1H), 6.2.-6.27 (m, 1H), 7.08-7.19 (m, 4H), 7.31-7.38 (m, 3H), 8.15 (s, 1H), 8.26 (s, 1H); MS, m/e 525 (M+l)+.
Example numbers 67-74, identified below, were prepared using similar procedures disclosed for Example 66, above.
Figure imgf000691_0001
Figure imgf000691_0002
Figure imgf000692_0001
Figure imgf000693_0002
Example numbers 75-80 are prepared using similar procedures disclosed for Example 66, above.
Figure imgf000693_0001
Figure imgf000693_0003
EXAMPLE 81
Certain exemplified compounds were obtained as mixture of diastereomers because of the chirality at phosphorous. The diastereomers were separated on a Chiralpak-AS-H (2 X 25 cm) column under Supercritical Fluid Chromatography (SFC) conditions using 20% methanol in carbon dioxide as solvent. The absolute stereochemistry of the P-chiral center of the diastereromers were not determined. However, chromatographic resolution of these two diastereomers provides for isomers that are characterized as fast eluting and slow eluting isomers. Some examples are shown below.
Figure imgf000694_0001
EXAMPLE 82
HCV replicon assay. HCV replicon RNA-containing Huh7 cells (clone A cells; Apath, LLC, St. Louis, Mo.) were kept at exponential growth in Dulbecco's modified Eagle's medium (high glucose) containing 10% fetal bovine serum, 4 mM L-glutamine and 1 mM sodium pyruvate, 1 x nonessential amino acids, and G418 (1,000 μg/ml). Antiviral assays were performed in the same medium without G418. Cells were seeded in a 96-well plate at 1,500 cells per well, and test compounds were added immediately after seeding. Incubation time 4 days. At the end of the incubation step, total cellular RNA was isolated (RNeasy 96 kit; Qiagen). Replicon RNA and an internal control (TaqMan rRNA control reagents; Applied Biosystems) were amplified in a single-step multiplex RT-PCR protocol as recommended by the manufacturer. The HCV primers and probe were designed with Primer Express software (Applied Biosystems) and covered highly conserved 5 '-untranslated region (UTR) sequences (sense, 5'- AGCCATGGCGTTAGTA(T)GAGTGT-S', and antisense, 5'- TTCCGCAGACCACTATGG-3'; probe, 5'-FAM- CCTCCAGGACCCCCCCTCCC-TAMRA-3').
To express the antiviral effectiveness of a compound, the threshold RT- PCR cycle of the test compound was subtracted from the average threshold RT- PCR cycle of the no-drug control (ΔCtπcv)- A ΔCt of 3.3 equals a 1-log 10 reduction (equal to the 90% effective concentration [EC90]) in replicon RNA levels. The cytotoxicity of the test compound could also be expressed by calculating the ΔCtrκNA values. The ΔΔCt specificity parameter could then be introduced (ΔQHCV ~ ΔCtrRNA), in which the levels of HCV RNA are normalized for the rRNA levels and calibrated against the no-drug control.
Figure imgf000695_0001
Figure imgf000696_0001
Figure imgf000697_0001
Figure imgf000698_0001
The entire contents of 60/909,315, filed March 30, 2007; 60/982,309, filed October 24, 2007; and 12/053,015, filed March 21, 2008 are hereby incorporated by reference in the present application so far as needed to supplement the present disclosure and/or rectify any errors. Moreover, the patent and non-patent references disclosed herein are incorporated by reference. In the event that the incorporated patent and non-patent reference contains a term that conflicts with a term disclosed in either one of the two Provisional Applications or the present application text, the meaning of the term contained in the present application text and the two Provisional Applications controls provided that the overall meaning of the incorporated subject matter is not lost.

Claims

We claim:
1. A compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, represented by formula I:
Figure imgf000699_0001
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C1-1O alkyl, or C1-6 alkyl, R1- is -OR' or -N(Rr)2);
(b) R >2^ i s u h,y,d ,!„ro„g„e„„n, / C-! 1-10 a „1l1k-y. ,!l, T R) 3iaa o „_r r R>3JbD a „„nd J τ R> 2z together are (CH2),, so as to form a cyclic ring that includes the adjoining N and C atoms,
C(O)CR33R313NHR1, where n is 2 to 4 and R1, R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2,
CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-io cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl,substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)p0H, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C14 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), Od-10 haloalkyl, O(aminoacyl), O(C1-]0 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(CM alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), O(CM alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C14 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(Q-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000701_0001
wherein
Z is N or CR12;
R7, R8,R9, R10, and R1 'are independently H, F, Cl, Br, I, OH, OR, SH, SR', NH2, NHR', NR'2, lower alkyl of C1 -C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R', wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-1O alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
R12 is an H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR', NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R1 ' being hydrogen, R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
2. A compound its stereoisomer, salt, hydrate, solvate, or crystalline form thereof selected from among
5 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-alanyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester);
6 2'-Deoxy-2'-fiuoro-2'-C-methyluridine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester;
7 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
8 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- alanyl phosphate (((S)-2- { (4-bromo-phenoxy)- [(2R,3 R,4R, 5R)-5 -(2,4-dioxo-3 ,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester); 9 N4-(N)N-dimethylformamidinyl)-2'-deoxy-2'-fluoro-2'-C- methylcytidine;
10 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-alanyl phosphate (((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenyoxy- phosphorylamino} -propionic acid methyl ester);
11 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(4-bromophenyl methoxy- valyl phosphate (2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy-valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2-oxo- 3-amino-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-fiιran-2- ylmethoxy]-phosphorylamino} -3 -methyl-butyric acid methyl ester);
12 2'-deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester;
13 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid ethyl ester; 14 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino]-propionic acid benzyl ester;
15 {[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4- fluoro-3-hydroxy-4-methyl4etrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -acetic acid methyl ester;
16 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy] -phosphorylamino} -propionic acid methyl ester;
17 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino] -propionic acid methyl ester;
18 (S)- 1 - { [(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin- 1 - yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphoryl}-pyrrolidine-2-carboxylic acid methyl ester; 19 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
20 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
21 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid methyl ester;
22 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
23 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-ruran-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester; 24 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid sec-butyl ester;
25 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester; 26 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid butyl ester;
27 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid ethyl ester;
28 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid isopropyl ester; 29 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
30 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino] -propionic acid isopropyl ester;
31 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-propionic acid benzyl ester;
32 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
33 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid isopropyl ester; 34 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid butyl ester;
35 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
36 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
37 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy] -(4-methoxy- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
38 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid pentyl ester; 39 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
40 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
41 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester; 42 (S)-2- { [(2R,3R,4R,5R)-5 -(2,4-Dioxo-3 ,4-dihydro-2H-pyrimidin- 1 - yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid butyl ester;
43 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid benzyl ester;
44 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-flιran-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid methyl ester; 45 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dmydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-ruran-2-ylraethoxy]-phenoxy- phosphorylamino}-propionic acid 4-fluoro-benzyl ester;
46 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
47 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 3 -methyl-butyl ester;
48 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
49 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclohexyl ester; 50 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
51 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid isopropyl ester;
52 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
53 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
54 (S)-2-{(4-Bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester; 55 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-
4-fluoro-3-hydroxy-4-methyl-tetrahydro-ruran-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
56 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-bromo- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
57 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid isopropyl ester; 58 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-memyl-tetrahydro-fiiran-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclohexyl ester;
59 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3 -hydroxy-4-methy l-tetrahydro-furan-2-y lmethoxy] -(4-fluoro- phenoxy)-phosphorylamino]-butyric acid cyclohexyl ester;
60 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4 R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -butyric acid isopropyl ester; 61 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid 2,2-difluoro-ethyl ester;
62 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2,2 -trifluoro- 1 -trifluoromethyl-ethyl ester;
63 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2-fluoro-1-fluoromethyl-ethyl ester;
64 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylraethoxy]-phenoxy- phosphorylamino} -propionic acid cyclopropyl methyl ester;
65 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclopentyl ester; 66 (S)-2-{ [(2R,3R,4R,5R)-5-(6-Amino-purin-9-yl)-4-fluoro-3-hydroxy-
4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}-propionic acid methyl ester;
67 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-hydroxy-purin-9-yl)-4-fluoro- 3 -hydroxy-4-methyl-tetrahydro-furan-2-y lmethoxy] -phenoxy- phosphorylamino} -propionic acid methyl ester;
68 (S)-2-{(R)-[(2R,3R,4R,5R)-5-(2,6-Diamino-purin-9-yl)-4-fluoro-3- hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy] -phenoxy-phosphorylamino } - propionic acid methyl ester;
69 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclopentylamino-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-foran-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
70 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-azetidin-1-yl-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 71 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-diethylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
72 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-propylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid methyl ester;
73 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclobutylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 74 (S)-2-({(2R,3R,4R,5R)-5-[2-Amino-6-(4-methyl-piperazin-1-yl)- purin-9-y l]-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy}- phenoxy-p hosphorylamino)-propionic acid methyl ester;
75 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (propylamino)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
76 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclobutylamino)-9H-purin-9- yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; 77 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclopentylamino)-9H-purin-
9-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
78 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(aziridin-1-yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
79 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (piperidin- 1 -yl)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; and
80 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(azetidin-1-yl)-9H-purin-9-yl)- 4-fluoro-3 -hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate.
3. A composition for the treatment and/or prophylaxis of any of the viral agents disclosed herein said composition comprising a pharmaceutically acceptable medium selected from among an excipient, carrier, diluent, and equivalent medium and a compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, represented by formula I:
Figure imgf000707_0001
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2.6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, Q-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR' or -N(Rr)2);
(b) R2 is hydrogen, C Mo alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR33R311NHR1, where n is 2 to 4 and R1, R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCORr, aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, Cμ6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is O to 2, e is O to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3 " is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), 0(C1-10 acyl), 0(CJ-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl),
SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C14 acyl), S(C14 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C14 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C14 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C14 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C!4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C14 acyl)2;
the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000710_0001
wherein
Z is N or CR12;
R7, R8,R9, R10, and R1 'are independently H, F, Cl, Br, I, OH, OR', SH, SR', NH2, NHR', NR'2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R1 comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
R12 is an H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR', NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R11 being hydrogen, R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2. 4. A composition for the treatment and/or prophylaxis of any of the viral agents disclosed herein said composition comprising a pharmaceutically acceptable medium selected from among an excipient, carrier, diluent, and equivalent medium and a compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, selected from among
5 2'-Deoxy-2'-fiuoro-2'-C-methyluridine 5'-(phenyl methoxy-alanyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dmydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester);
6 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester; 7 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
8 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- alanyl phosphate (((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester);
9 N4-(N,N-dimethylformamidinyl)-2'-deoxy-2'-fluoro-2'-C- methylcytidine; 10 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-alanyl phosphate (((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenyoxy- phosphorylamino} -propionic acid methyl ester);
11 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(4-bromophenyl methoxy- valyl phosphate (2'-Deoxy-2'-fiuoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy-valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2-oxo- 3-amino-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
12 2'-deoxy-2'-fiuoro-2'-C-methylcytidine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester;
13 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid ethyl ester;
14 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino]-propionic acid benzyl ester;
15 {[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -acetic acid methyl ester; 16 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
17 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino] -propionic acid methyl ester;
18 (S)-1-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphoryl}-pyrrolidine-2-carboxylic acid methyl ester; 19 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
20 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
21 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid methyl ester;
22 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
23 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester; 24 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid sec-butyl ester;
25 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester;
26 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid butyl ester;
27 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid ethyl ester;
28 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid isopropyl ester; 29 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
30 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid isopropyl ester;
31 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxyj-phosphorylamino} -propionic acid benzyl ester; 32 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
33 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid isopropyl ester;
34 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid butyl ester; 35 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
36 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-ruran-2- ylmethoxy]-phosphorylamino}-propionic acid isopropyl ester;
37 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino] -propionic acid benzyl ester;
38 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid pentyl ester;
39 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester; 40 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
41 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxyj-phosphorylamino} -propionic acid ethyl ester;
42 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino}-propionic acid butyl ester;
43 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid benzyl ester;
44 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid methyl ester; 45 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 4-fluoro-benzyl ester;
46 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
47 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 3 -methyl-butyl ester; 48 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
49 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclohexyl ester;
50 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester; 51 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester;
52 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
53 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
54 (S)-2-{(4-Bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy] -phosphorylamino} -propionic acid isopropyl ester;
55 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester; 56 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-l -yl)-
4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-bromo- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
57 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid isopropyl ester;
58 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclohexyl ester;
59 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2-y lmethoxy] -(4-fluoro- phenoxy)-phosphorylamino]-butyric acid cyclohexyl ester;
60 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4 R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- y lmethoxy] -phosphorylamino} -butyric acid isopropyl ester; 61 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2-difluoro-ethyl ester;
62 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2,2-trifluoro- 1 -trifluoromethyl-ethyl ester; 63 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2-fluoro-1-fluoromethyl-ethyl ester; 64 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclopropyl methyl ester;
65 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclopentyl ester;
66 (S)-2-{[(2R,3R,4R,5R)-5-(6-Amino-purin-9-yl)-4-fluoro-3-hydroxy- 4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}-propionic acid methyl ester; 67 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-hydroxy-purin-9-yl)-4-fluoro-
3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
68 (S)-2-{(R)-[(2R,3R,4R,5R)-5-(2,6-Diamino-purin-9-yl)-4-fluoro-3- hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}- propionic acid methyl ester;
69 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclopentylamino-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
70 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-azetidin-1-yl-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
71 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-diethylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 72 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-propylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
73 (S)-2- { [(2R,3R,4R,5R)-5-(2-Amino-6-cyclobutylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-foran-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
74 (S)-2-({(2R,3R,4R,5R)-5-[2-Amino-6-(4-methyl-piperazin-1-yl)- purin-9-y l]-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy}- phenoxy-p hosphorylamino)-propionic acid methyl ester;
75 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (propylamino)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
76 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclobutylamino)-9H-purin-9- yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; 77 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclopentylamino)-9H-purin-
9-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
78 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(aziridin-l -yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
79 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (piperidin- 1 -yl)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; and 80 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(azetidin-1-yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate. 5. A use of the compound represented by formula I in the manufacture of a medicament for the treatment of any condition the result of an infection by hepatitis C virus, West Nile virus, yellow fever virus, dengue virus, rhinovirus, polio virus, hepatitis A virus, bovine viral diarrhea virus or Japanese encephalitis virus.
wherein the compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, are represented by formula I:
Figure imgf000716_0001
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1 -, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1 - is -OR' or -N(Rr)2);
(b) R2 is hydrogen, C 1-10 alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR33R313NHR1, where n is 2 to 4 and R1, R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-5 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)I, so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is 0 to 2, e is 0 to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-2O alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C^o alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-io cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN; (g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC-10 haloalkyl, O(aminoacyl), 0(C1-10 acyl), O(C4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C- 4 acyl), OS(O)2(C14 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C14 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), O(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C14 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C14 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C14 acyl), N(C14 alkyl)2, N(C14 acyl)2;
the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000718_0001
wherein
Z is N or CR12; R7, R8,R9, R10, and Rπare independently H, F, Cl, Br, I, OH, OR1, SH, SR1, NH2, NHR', NR'2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of CpC6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R, CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
R12 is an H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR', NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R11 being hydrogen, R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
6. A use of
a compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, selected from among
5 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-alanyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester);
6 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester;
7 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -3 -methyl-butyric acid methyl ester);
8 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- alanyl phosphate (((S)-2- {(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-propionic acid methyl ester);
9 N4-(N,N-dimethylformamidinyl)-2'-deoxy-2'-fluoro-2'-C- methylcytidine;
10 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-alanyl phosphate (((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenyoxy- phosphorylamino} -propionic acid methyl ester);
11 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(4-bromophenyl methoxy- valyl phosphate (2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy-valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2-oxo- 3-amino-pyrimidin- 1 -yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
12 2'-deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-fiiran-2-ylmethoxy]-phenoxy- phosphorylamino} -3 -methyl-butyric acid methyl ester;
13 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid ethyl ester;
14 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino]-propionic acid benzyl ester;
15 {[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -acetic acid methyl ester; 16 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-turan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
17 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino] -propionic acid methyl ester;
18 (S)-1-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphoryl}-pyrrolidine-2-carboxylic acid methyl ester;
19 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
20 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester; 21 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid methyl ester;
22 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
23 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester; 24 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dmydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid sec-butyl ester;
25 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester;
26 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dmydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino] -propionic acid butyl ester;
27 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid ethyl ester;
28 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid isopropyl ester; 29 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid benzyl ester;
30 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino] -propionic acid isopropyl ester;
31 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid benzyl ester;
32 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
33 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid isopropyl ester; 34 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid butyl ester;
35 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
36 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-flιran-2- ylmethoxy]-phosphorylamino}-propionic acid isopropyl ester; 37 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino] -propionic acid benzyl ester;
38 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid pentyl ester;
39 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester; 40 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
41 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxyj-phosphorylamino} -propionic acid ethyl ester;
42 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid butyl ester;
43 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid benzyl ester;
44 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid methyl ester; 45 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 4-fluoro-benzyl ester;
46 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
47 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 3 -methyl-butyl ester;
48 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
49 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclohexyl ester; 50 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid butyl ester;
51 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester;
52 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester; 53 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
54 (S)-2-{(4-Bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-raethyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
55 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester; 56 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-
4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-bromo- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
57 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid isopropyl ester;
58 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclohexyl ester;
59 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-butyric acid cyclohexyl ester;
60 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4 R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -butyric acid isopropyl ester; 61 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2-difluoro-ethyl ester;
62 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2,2-trifluoro-1-trifluoromethyl -ethyl ester; 63 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2-fluoro-1-fluoromethyl-ethyl ester;
64 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclopropyl methyl ester;
65 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclopentyl ester; 66 (S)-2-{ [(2R,3R,4R,5R)-5-(6-Amino-purin-9-yl)-4-fluoro-3-hydroxy-
4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}-propionic acid methyl ester;
67 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-hydroxy-purin-9-yl)-4-fluoro- 3 -hydroxy-4-methyl-tetrahydro-furan-2-y lmethoxy] -phenoxy- phosphorylamino} -propionic acid methyl ester;
68 (S)-2-{(R)-[(2R,3R,4R,5R)-5-(2,6-Diamino-purin-9-yl)-4-fluoro-3- hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}- propionic acid methyl ester; 69 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclopentylamino-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
70 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-azetidin-1-yl-purin-9-yl)-4- fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy] -phenoxy- phosphorylamino} -propionic acid methyl ester;
71 (S)-2-{[(2R,3R,4R,5R)-5-(2-Ammo-6-diethylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl4etrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 72 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-propylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
73 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclobutylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
74 (S)-2-({(2R,3R,4R,5R)-5-[2-Amino-6-(4-methyl-piperazin-1-yl)- purin-9-y l]-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy}- phenoxy-p hosphorylamino)-propionic acid methyl ester;
75 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (propylamino)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
76 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclobutylamino)-9H-purin-9- yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; 77 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclopentylamino)-9H-purin-
9-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
78 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(aziridin-1-yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
79 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (piperidin- 1 -yl)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; and
80 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(azetidin-l -yl)-9H-purin-9-yl)- 4-fluoro-3 -hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate in the manufacture of a medicament for the treatment of any condition the result of an infection by hepatitis C virus, West Nile virus, yellow fever virus, dengue virus, rhinovirus, polio virus, hepatitis A virus, bovine viral diarrhea virus or Japanese encephalitis virus.
7. A method of treatment in a subject in need thereof, which comprises: administering a therapeutically effective amount of the compound represented by formula I to the subject;
wherein the compound or its stereoisomer, salt, hydrate, solvate, or crystalline form thereof represented by formula I:
Figure imgf000725_0001
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1.io alkyl, or C1-6 alkyl, R1- is -OR' or -N(Rr)2);
(b) R2 is hydrogen, C i-10 alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR3aR3bNHR1, where n is 2 to 4 and R1, R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is O to 2, e is O to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3- is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN, Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), O(C1-K) acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C!-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C!-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000727_0001
b
wherein
Z is N or CR12;
R7, R8,R9, R10, and R1 'are independently H, F, Cl, Br, I, OH, OR1, SH,
SR', NH2, NHR', NR'2, lower alkyl of C1 -C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of CpC6, halogenated (F, Cl, Br, 1) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-10 alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR'2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and
R12 is an H, halogen (including F, Cl, Br, I), OH, OR', SH, SR1, NH2, NHR', NR'2, NO2 lower alkyl of CrC6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R11 being hydrogen, R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2.
8. A method of treatment in a subject in need thereof, which comprises: administering a therapeutically effective amount of a compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, selected from among 5 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-alanyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester);
6 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester;
7 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester); 8 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- alanyl phosphate (((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester); 9 N4-(N,N-dimethylformamidinyl)-2'-deoxy-2'-fluoro-2'-C- methylcytidine;
10 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-alanyl phosphate (((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenyoxy- phosphorylamino} -propionic acid methyl ester);
11 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(4-bromophenyl methoxy- valyl phosphate (2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy-valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2-oxo- 3-amino-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
12 2'-deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3 -hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy] -phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester; 13 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid ethyl ester;
14 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3 -hydroxy-4-methy l-tetrahydro-furan-2-ylmethoxy] -(naphthalen- 1 - yloxy)-phosphorylamino]-propionic acid benzyl ester;
15 {[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -acetic acid methyl ester;
16 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
17 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino]-propionic acid methyl ester; 18 (S)-1-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphoryl}-pyrrolidine-2-carboxylic acid methyl ester;
19 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
20 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
21 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid methyl ester;
22 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxyj-phosphorylamino} -propionic acid methyl ester; 23 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
24 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid sec-butyl ester;
25 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester; 26 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-ruran-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid butyl ester;
27 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-ruran-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid ethyl ester;
28 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid isopropyl ester;
29 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
30 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid isopropyl ester; 31 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid benzyl ester;
32 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxyj-phosphorylamino} -propionic acid butyl ester;
33 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid isopropyl ester;
34 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid butyl ester;
35 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester; 36 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
37 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
38 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid pentyl ester; 39 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
40 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-ruran-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
41 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester; 42 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid butyl ester;
43 (S)-2- { [(2R,3R,4R,5R)-5 -(2,4-Dioxo- 3 ,4-dihydro-2H-pyrimidin- 1 - yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid benzyl ester;
44 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid methyl ester;
45 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 4-fluoro-benzyl ester;
46 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester; 47 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid 3 -methyl-butyl ester;
48 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
49 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclohexyl ester;
50 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
51 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester; 52 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
53 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
54 (S)-2-{(4-Bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester; 55 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
56 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-fiιran-2-ylmethoxy]-(4-bromo- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
57 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid isopropyl ester; 58 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclohexyl ester;
59 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -butyric acid cyclohexyl ester;
60 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4 R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -butyric acid isopropyl ester;
61 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2-difluoro-ethyl ester;
62 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2,2-trifluoro-1-trifluoromethyl-ethyl ester; 63 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2-fluoro-1-fluoromethyl-ethyl ester;
64 (S)-2-{ [(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin- 1 - yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclopropyl methyl ester;
65 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclopentyl ester;
66 (S)-2-{[(2R,3R,4R,5R)-5-(6-Amino-purin-9-yl)-4-fluoro-3-hydroxy- 4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}-propionic acid methyl ester;
67 (S)-2- { [(2R,3R,4R,5R)-5-(2-Amino-6-hydroxy-purin-9-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid methyl ester; 68 (S)-2-{(R)-[(2R,3R,4R,5R)-5-(2,6-Diamino-purin-9-yl)-4-fluoro-3- hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}- propionic acid methyl ester;
69 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclopentylamino-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
70 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-azetidin-1-yl-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 71 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-diethylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
72 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-propylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
73 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclobutylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 74 (S)-2-({(2R,3R,4R,5R)-5-[2-Amino-6-(4-methyl-piperazin-1-yl)- purin-9-y l]-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy}- phenoxy-p hosphorylamino)-propionic acid methyl ester;
75 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (propylamino)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
76 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclobutylamino)-9H-purin-9- yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
77 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclopentylamino)-9H-purin- 9-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
78 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(aziridin-1-yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; 79 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6-
(piperidin- 1 -yl)-9H-purin-9-yl)tetrahydrofiiran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; and
80 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(azetidin-1-yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate.
9. A process for preparing a compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, represented by formula I:
Figure imgf000733_0001
wherein (a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(Rr)2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(Rr)2, COR1-, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR' or -N(Rr)2);
(b) R2 is hydrogen, C uw alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR33R315NHR1 , where n is 2 to 4 and R1 , R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)C(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are C1-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is O to 2, e is O to 3, f is 2 to 5, n is 2 to 4, and where R3 is independently hydrogen or C1-6 alkyl and R3 " is -OR' or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CHa)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl,
CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3 is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR1 or -N(R3')2);
(d) R4 is hydrogen, C1-1O alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3.10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)POH, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN,
Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), 0(C-10 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C14 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C14 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C1-4 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), O(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C14 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C14 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C14 alkyl)2, N(C4 acyl)2; the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000736_0001
wherein
Z is N or CR12;
R7, R8,R9, R!0, and R1 'are independently H, F, Cl, Br, I, OH, OR, SH, SR', NH2, NHR', NR'2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1 -C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR'2, CH=CHCO2H, or CH=CHCO2R',
wherein R is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-2O alkyl, an optionally substituted C1-1O alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-]0 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and R12 is an H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR', NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of Q-C6, CO2H, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R1 ' being hydrogen, R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2;
said process comprising:
reacting a substituted phosphochloridate compound 4 with a nucleoside analog 5
Figure imgf000737_0001
10. A process for preparing a compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, selected from among 5 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-alanyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester);
6 2'-Deoxy-2'-fiuoro-2'-C-methyluridine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -3 -methyl-butyric acid methyl ester;
7 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
8 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- alanyl phosphate (((S)-2- {(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester);
9 N4-(N,N-dimethylformamidinyl)-2'-deoxy-2'-fluoro-2'-C- methylcytidine;
10 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-alanyl phosphate (((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenyoxy- phosphorylamino}-propionic acid methyl ester);
11 2'-Deoxy-2'-fluoro-2I-C-methylcytidine 5'-(4-bromophenyl methoxy- valyl phosphate (2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy-valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2-oxo- 3-amino-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
12 2'-deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3 -hydroxy-4-methyl-tetrahydro-furan-2-y lmethoxy ] -phenoxy- phosphorylamino} -3 -methyl-butyric acid methyl ester;
13 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid ethyl ester; 14 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-turan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino] -propionic acid benzyl ester;
15 {[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -acetic acid methyl ester;
16 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- y lmethoxy] -phosphorylamino} -propionic acid methyl ester;
17 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino]-propionic acid methyl ester;
18 (S)-1-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphoryl}-pyrrolidine-2-carboxylic acid methyl ester; 19 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
20 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
21 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid methyl ester;
22 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-turan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
23 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester; 24 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid sec-butyl ester;
25 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester; 26 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid butyl ester;
27 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid ethyl ester;
28 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid isopropyl ester; 29 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
30 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid isopropyl ester;
31 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-propionic acid benzyl ester;
32 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
33 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid isopropyl ester; 34 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid butyl ester;
35 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxyj-phosphorylamino} -propionic acid ethyl ester;
36 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
37 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
38 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid pentyl ester; 39 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
40 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
41 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester; 42 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino}-propionic acid butyl ester;
43 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid benzyl ester;
44 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid methyl ester; 45 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 4-fluoro-benzyl ester;
46 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy] -phosphorylamino } -propionic acid butyl ester;
47 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 3 -methyl-butyl ester;
48 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
49 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-fiiran-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclohexyl ester; 50 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid butyl ester;
51 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester;
52 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid benzyl ester;
53 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
54 (S)-2-{(4-Bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester; 55 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-
4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
56 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-bromo- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
57 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid isopropyl ester; 58 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclohexyl ester;
59 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2-y lmethoxy] -(4-fluoro- phenoxy)-phosphorylamino]-butyric acid cyclohexyl ester;
60 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4 R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy] -phosphorylamino} -butyric acid isopropyl ester; 61 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2-difluoro-ethyl ester;
62 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-fiiran-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2,2-trifluoro-1-trifluoromethyl-ethyl ester;
63 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2-fluoro-1-fluoromethyl-ethyl ester;
64 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid cyclopropyl methyl ester;
65 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclopentyl ester; 66 (S)-2-{[(2R,3R,4R,5R)-5-(6-Amino-purin-9-yl)-4-fluoro-3-hydroxy-
4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}-propionic acid methyl ester;
67 (S)-2- { [(2R,3R,4R,5R)-5-(2-Amino-6-hydroxy-purin-9-yl)-4-fluoro- 3 -hydroxy-4-methyl-tetrahydro-furan-2-y lmethoxy] -phenoxy- phosphorylamino}-propionic acid methyl ester;
68 (S)-2-{(R)-[(2R,3R,4R,5R)-5-(2,6-Diamino-purin-9-yl)-4-fluoro-3- hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}- propionic acid methyl ester;
69 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclopentylamino-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
70 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-azetidin-1-yl-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid methyl ester; 71 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-diethylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
72 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-propylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
73 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclobutylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 74 (S)-2-({(2R,3R,4R,5R)-5-[2-Amino-6-(4-methyl-piperazin-1-yl)- purin-9-y l]-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy}- phenoxy-p hosphorylamino)-propionic acid methyl ester;
75 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (propylamino)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
76 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclobutylamino)-9H-purin-9- yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; 77 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclopentylamino)-9H-purin-
9-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
78 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(aziridm-l -yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
79 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (piperidin- 1 -yl)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; and
80 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(azetidin-1-yl)-9H-purin-9-yl)- 4-fluoro-3 -hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate said process comprising:
reacting a substituted phosphochloridate compound 4 with a nucleoside analog 5
Figure imgf000742_0001
11. A product its stereoisomer, salt, hydrate, solvate or crystalline form thereof, prepared a process comprising:
reacting a substituted phosphochloridate compound 4 with a nucleoside analog 5
Figure imgf000743_0001
wherein
(a) R1 is hydrogen, n-alkyl; branched alkyl; cycloalkyl; or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with at least one of C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C i-6 alkoxy, F, Cl, Br, I, nitro, cyano, C1-6 haloalkyl, -N(R1 )2, C1-6 acylamino, - NHSO2C1-6 alkyl, -SO2N(R1')^ COR1 -, and -SO2C1-6 alkyl; (R1' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R1- is -OR1 or -N(Rr)2);
(b) R2 is hydrogen, C ]-10 alkyl, R3a or R3b and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, C(O)CR33R36NHR1, where n is 2 to 4 and R1, R3a, and R3b;
(c) R3a and R3b are (i) independently selected from hydrogen, C1-10 alkyl, cycloalkyl, -(CH2)c(NR3')2, C1-6 hydroxyalkyl, -CH2SH, -(CH2)2S(O)dMe, - (CH2)3NHC(=NH)NH2, (1H-indol-3-yl)methyl, (1H-imidazol-4-yl)methyl, - (CH2)eCOR3 , aryl and aryl C1-3 alkyl, said aryl groups optionally substituted with a group selected from hydroxyl, C1-10 alkyl, C1-6 alkoxy, halogen, nitro and cyano; (ii) R3a and R3b both are Q-6 alkyl; (iii) R3a and R3b together are(CH2)f so as to form a spiro ring; (iv) R3a is hydrogen and R3b and R2 together are (CH2),, so as to form a cyclic ring that includes the adjoining N and C atoms (v) R3b is hydrogen and R3a and R2 together are (CH2)n so as to form a cyclic ring that includes the adjoining N and C atoms, where c is 1 to 6, d is O to 2, e is O to 3, f is 2 to 5, n is 2 to 4, and where R3' is independently hydrogen or C1-6 alkyl and R3- is -OR1 or -N(R3')2); (vi) R3a is H and R3b is H, CH3, CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2-imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl; or (viii) R3a is CH3, -CH2CH3, CH(CH3)2, CH2CH(CH3)2, CH(CH3)CH2CH3, CH2Ph, CH2-indol-3-yl, -CH2CH2SCH3, CH2CO2H, CH2C(O)NH2, CH2CH2COOH, CH2CH2C(O)NH2, CH2CH2CH2CH2NH2, -CH2CH2CH2NHC(NH)NH2, CH2- imidazol-4-yl, CH2OH, CH(OH)CH3, CH2((4'-OH)-Ph), CH2SH, or lower cycloalkyl and R3b is H, where R3' is independently hydrogen or alkyl, which includes, but is not limited to, C1-20 alkyl, C1-10 alkyl, or C1-6 alkyl, R3 is -OR' or -N(R3')2);
(d) R4 is hydrogen, C1-10 alkyl, C1-10 alkyl optionally substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, or halogen, C1-10 haloalkyl, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aminoacyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
(e) R5 is H, a lower alkyl, CN, vinyl, O-(lower alkyl), hydroxyl lower alkyl, i.e., -(CH2)p0H, where p is 1 -6, including hydroxyl methyl (CH2OH), CH2F, N3, CH2CN, CH2NH2, CH2NHCH3, CH2N(CH3)2, alkyne (optionally substituted), or halogen, including F, Cl, Br, or I, with the provisos that when X is OH, base is cytosine and R6 is H, R5 cannot be N3 and when X is OH, R6 is CH3 or CH2F and B is a purine base, R5 cannot be H;
(f) R6 is H, CH3, CH2F, CHF2, CF3, F, or CN;
(g) X is H, OH, F, OMe, halogen, NH2, or N3;
(h) Y is OH, H, C1-4 alkyl, C2-4 alkenyl, C2-4 alkynyl, vinyl, N3, CN,
Cl, Br, F, I, NO2, OC(O)O(C1-4 alkyl), OC(O)O(C1-4 alkyl), OC(O)O(C2-4 alkynyl), OC(O)O(C2-4 alkenyl), OC1-10 haloalkyl, O(aminoacyl), 0(C1-10 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1- 4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(C2-4 alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-18 acyl)2, wherein alkyl, alkynyl, alkenyl and vinyl are optionally substituted by N3, CN, one to three halogen (Cl, Br, F, I), NO2, C(O)O(C14 alkyl), C(O)O(C1-4 alkyl), C(O)O(C2-4 alkynyl), C(O)O(C2-4 alkenyl), 0(C1-4 acyl), 0(C1-4 alkyl), 0(C2-4 alkenyl), S(C1-4 acyl), S(C1-4 alkyl), S(C2-4 alkynyl), S(C2-4 alkenyl), SO(C1-4 acyl), SO(C1-4 alkyl), SO(C2-4 alkynyl), SO(C2-4 alkenyl), SO2(C1-4 acyl), SO2(C1-4 alkyl), SO2(C2-4 alkynyl), SO2(C2-4 alkenyl), OS(O)2(C1-4 acyl), OS(O)2(C1-4 alkyl), OS(O)2(C2-4 alkenyl), NH2, NH(C1-4 alkyl), NH(C2-4 alkenyl), NH(Qw alkynyl), NH(C1-4 acyl), N(C1-4 alkyl)2, N(C1-4 acyl)2;
the base is a naturally occurring or modified purine or pyrimidine base represented by the following structures:
Figure imgf000745_0001
wherein
Z is N or CR12;
R7, R8,R9, R10, and Rπare independently H, F, Cl, Br, I, OH, OR', SH, SR', NH2, NHR', NR'2, lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6, lower alkynyl of C2-C6 such as C≡CH, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', CONR2, CH=CHCO2H, or CH=CHCO2R',
wherein R' is an optionally substituted alkyl , which includes, but is not limited to, an optionally substituted C1-20 alkyl, an optionally substituted C1-1O alkyl, an optionally substituted lower alkyl; an optionally substituted cycloalkyl; an optionally substituted alkynyl of C2-C6, an optionally substituted lower alkenyl of C2-C6, or optionally substituted acyl, which includes but is not limited to C(O) alkyl, C(O)(C1-20 alkyl), C(O)(C1-10 alkyl), or C(O)(lower alkyl) or alternatively, in the instance of NR2, each R' comprise at least one C atom that are joined to form a heterocycle comprising at least two carbon atoms; and R12 is an H, halogen (including F, Cl, Br, I), OH, OR', SH, SR', NH2, NHR', NR'2, NO2 lower alkyl of C1-C6, halogenated (F, Cl, Br, I) lower alkyl of C1-C6, lower alkenyl of C2-C6, halogenated (F, Cl, Br, I) lower alkenyl of C2-C6 , lower alkynyl of C2-C6, halogenated (F, Cl, Br, I) lower alkynyl of C2-C6, lower alkoxy of C1-C6, halogenated (F, Cl, Br, I) lower alkoxy of C1-C6, CO2H, CO2R', CONH2, CONHR', C0NR'2, CH=CHCO2H, or CH=CHCO2R'; with the proviso that when base is represented by the structure c with R11 being hydrogen, R12 is not a: (i) -C≡C-H, (ii) -C=CH2, or (iii) -NO2
and
wherein X' is a leaving group, such as, Cl.
12. A product its stereoisomer, salt, hydrate, solvate or crystalline form thereof, prepared a process comprising:
reacting a substituted phosphochloridate compound 4 with a nucleoside analog 5
Figure imgf000746_0001
wherein the product comprises a compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof, selected from among
5 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-alanyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid methyl ester);
6 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester;
7 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester); 8 2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy- alanyl phosphate (((S)-2- {(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester); 9 N4-(N,N-dimethylformamidinyl)-2I-deoxy-2'-fluoro-2'-C- methylcytidine;
10 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-alanyl phosphate (((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenyoxy- phosphorylamino}-propionic acid methyl ester);
11 2'-Deoxy-2'-fluoro-2'-C-methylcytidine 5'-(4-bromophenyl methoxy- valyl phosphate (2'-Deoxy-2'-fluoro-2'-C-methyluridine 5'-(4-bromophenyl methoxy-valyl phosphate ((S)-2-{(4-bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2-oxo- 3-amino-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-3-methyl-butyric acid methyl ester);
12 2'-deoxy-2'-fluoro-2'-C-methylcytidine 5'-(phenyl methoxy-valyl phosphate ((S)-2-{[(2R,3R,4R,5R)-5-(2-oxo-3-amino-pyrimidin-1-yl)-4-fluoro- 3 -hydroxy-4-methyl-tetrahydro-furan-2-y lmethoxy] -phenoxy- phosphorylamino}-3-methyl-butyric acid methyl ester; 13 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid ethyl ester;
14 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino] -propionic acid benzyl ester;
15 {[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-acetic acid methyl ester;
16 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
17 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(naphthalen-1- yloxy)-phosphorylamino]-propionic acid methyl ester; 18 (S)-1-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphoryl}-pyrrolidine-2-carboxylic acid methyl ester;
19 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino}-propionic acid butyl ester;
20 (S)-2- { [(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin- 1 - yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
21 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid methyl ester;
22 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester; 23 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid methyl ester;
24 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid sec-butyl ester;
25 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester; 26 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid butyl ester;
27 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino] -propionic acid ethyl ester;
28 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid isopropyl ester;
29 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
30 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid isopropyl ester; 31 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid benzyl ester;
32 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
33 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid isopropyl ester;
34 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid butyl ester;
35 (S)-2-{(3,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester; 36 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid isopropyl ester;
37 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-methoxy- phenoxy)-phosphorylamino]-propionic acid benzyl ester;
38 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid pentyl ester; 39 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyriniidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-propionic acid isopropyl ester;
40 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
41 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino}-propionic acid ethyl ester; 42 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid butyl ester;
43 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-p-tolyloxy- phosphorylamino} -propionic acid benzyl ester;
44 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid methyl ester;
45 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-fiiran-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 4-fluoro-benzyl ester;
46 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester; 47 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 3 -methyl-butyl ester;
48 (S)-2-{(2,4-Dichloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid ethyl ester;
49 (S)-2- { [(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin- 1 - yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclohexyl ester;
50 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid butyl ester;
51 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid isopropyl ester; 52 (R)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid benzyl ester;
53 (S)-2-{(2-Chloro-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -propionic acid butyl ester;
54 (S)-2-{(4-Bromo-phenoxy)-[(2R,3R,4R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin- 1 -yl)-4-fluoro-3 -hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxyj-phosphorylamino} -propionic acid isopropyl ester; 55 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-propionic acid cyclohexyl ester;
56 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-bromo- phenoxy)-phosphorylamino] -propionic acid cyclohexyl ester;
57 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid isopropyl ester; 58 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclohexyl ester;
59 (S)-2-[[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-(4-fluoro- phenoxy)-phosphorylamino]-butyric acid cyclohexyl ester;
60 (S)-2-{(4-Chloro-phenoxy)-[(2R,3R,4 R,5R)-5-(2,4-dioxo-3,4- dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2- ylmethoxy]-phosphorylamino} -butyric acid isopropyl ester;
61 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2-difluoro-ethyl ester;
62 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2,2,2-trifluoro-1-trifluoromethyl-ethyl ester; 63 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid 2-fluoro-1-fluoromethyl-ethyl ester;
64 (S)-2-{[(2R,3R,4R,5R)-5-(2,4-Dioxo- 3,4-dihydro-2H-pyrimidin-1- yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid cyclopropyl methyl ester;
65 (S)-2-{ [(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-l - yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -butyric acid cyclopentyl ester;
66 (S)-2-{[(2R,3R,4R,5R)-5-(6-Amino-purin-9-yl)-4-fluoro-3-hydroxy- 4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}-propionic acid methyl ester;
67 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-hydroxy-purin-9-yl)-4-fluoro- 3 -hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy] -phenoxy- phosphorylamino} -propionic acid methyl ester; 68 (S)-2-{(R)-[(2R,3R,4R,5R)-5-(2,6-Diamino-purin-9-yl)-4-fluoro-3- hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}- propionic acid methyl ester;
69 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclopentylamino-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
70 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-azetidin-1-yl-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 71 (S)-2-{[(2R,3R,4R,5R)-5-(2-Ammo-6-diethylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester;
72 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-propylammo-purin-9-yl)-4- fluoro-34tydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy] -phenoxy- phosphorylamino}-propionic acid methyl ester;
73 (S)-2-{[(2R,3R,4R,5R)-5-(2-Amino-6-cyclobutylamino-purin-9-yl)-4- fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy- phosphorylamino} -propionic acid methyl ester; 74 (S)-2-({(2R,3R,4R,5R)-5-[2-Amino-6-(4-methyl-piperazin-1-yl)- purin-9-y l]-4-fluoro-3-hydroxy-4-methyl4etrahydro-furan-2-ylmethoxy}- phenoxy-p hosphorylamino)-propionic acid methyl ester;
75 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6- (propylamino)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
76 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclobutylamino)-9H-purin-9- yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
77 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(cyclopentylamino)-9H-purin- 9-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate;
78 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(aziridin-1-yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; 79 (2S)-methyl 2-((((2R,3R,4R,5R)-4-fluoro-3-hydroxy-4-methyl-5-(6-
(piperidin- 1 -yl)-9H-purin-9-yl)tetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate; and
80 (2S)-methyl 2-((((2R,3R,4R,5R)-5-(6-(azetidin-1-yl)-9H-purin-9-yl)- 4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2- yl)methoxy)(phenoxy)phosphorylamino)propanoate wherein Base' is as recited in each of compounds 5-74; and wherein X' is a leaving group, such as, Cl.
PCT/US2008/058183 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs WO2008121634A2 (en)

Priority Applications (37)

Application Number Priority Date Filing Date Title
BRPI0809654-6A BRPI0809654A2 (en) 2007-03-30 2008-03-26 Compound, its stereoisomer, salt, hydrate, solvate, or crystalline form thereof and process for preparing same and use thereof, composition for treatment and / or prophylaxis of any viral agents, use of compound, method of treating individual
ES08732818.3T ES2492470T3 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
DK08732818.3T DK2203462T3 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
EP14179358.8A EP2826784B1 (en) 2007-03-30 2008-03-26 Composition comprising a HCV NS3 protease inhibitor and a phosphoramidate prodrug of 2'-deoxy-2'-fluoro-2'-C-methyluridine nucleoside
BRPI0823519A BRPI0823519A2 (en) 2007-03-30 2008-03-26 compound, its stereoisomer, composition and use of said compound or stereoisomer
CA2682230A CA2682230C (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
CN200880018024.2A CN101918425B (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
EP14169060.2A EP2801580B1 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
SI200831244T SI2203462T1 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
NZ579880A NZ579880A (en) 2007-03-30 2008-03-26 (S)-2-{ [(2R,3R,4R,5R)-5-(2,4-Dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino} -propionic acid isopropyl ester
RU2009139968K RU2651892C2 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidates as antiviral agents
MX2009010401A MX2009010401A (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs.
JP2010502196A JP5318085B2 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrug
RU2009139968A RU2651892C3 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidates as antiviral agents
CN201811348434.5A CN109776637B (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
KR1020147036573A KR101527701B1 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
CN202310694712.7A CN116731098A (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
KR1020127004146A KR101525293B1 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
PL14179358T PL2826784T3 (en) 2007-03-30 2008-03-26 Composition comprising a HCV NS3 protease inhibitor and a phosphoramidate prodrug of 2'-deoxy-2'-fluoro-2'-C-methyluridine nucleoside
CN202310695479.4A CN116731099A (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
AU2008232827A AU2008232827C1 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
PL08732818T PL2203462T3 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
KR1020097022652A KR101432860B1 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
EP08732818.3A EP2203462B2 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
EP23197008.8A EP4282482A3 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs
ZA2009/06647A ZA200906647B (en) 2007-03-30 2009-09-23 Nucleoside phosphoramidate prodrugs
IL201239A IL201239A (en) 2007-03-30 2009-09-29 (s)-2-{[(2r,3r,4r,5r)-5-(2,4-dioxo-3,4-dihydro-2h-pyrimidin-1-yl)-4-fluoro-3-hydroxy-4-methyl-tetrahydrofuran-2-ylmethoxy]-phenoxy-phosphorylamino}-propionic acid isopropyl ester or a stereoisomer thereof, (s)-isopropyl 2-(((s)-((2r,3r,4r,5r)-5-(2,4-dioxo-3,4-dihydropyrimidin-yl)methoxy)(phenoxy)phosphoryl)amino)propanoate, a method of synthesizing the nucleotides and uses thereof
IL217228A IL217228A (en) 2007-03-30 2011-12-27 Nucleoside phosphoramidate prodrugs of 2'-deoxy-2'-fluoro-2'-c-methyluridine
IL222810A IL222810A0 (en) 2007-03-30 2012-11-01 Nucleoside phosphorramidate prodrugs
HRP20140667AT HRP20140667T1 (en) 2007-03-30 2014-07-14 Nucleoside phosphoramidate prodrugs
CY2014047C CY2014047I1 (en) 2007-03-30 2014-11-18 NUCLEOSIDE PHOSPHORIMIDE PRODRUGS
NL300704C NL300704I2 (en) 2007-03-30 2014-11-19
LU92600C LU92600I2 (en) 2007-03-30 2014-11-19 SOVALDI (SOFOSBUVIR)
FR14C0082C FR14C0082I2 (en) 2007-03-30 2014-11-19 NUCLEOSIDE PHOSPHORAMIDATE PRODRUGS
LTPA2014040C LTC2203462I2 (en) 2007-03-30 2014-11-21 Prodrugs of Nucleoside Phosphoramidate
PH12014502771A PH12014502771A1 (en) 2007-03-30 2014-12-10 Nucleoside phosphoramidate prodrugs
NO2021031C NO2021031I1 (en) 2007-03-30 2021-07-26 Sofosbuvir - extended SPC

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US90931507P 2007-03-30 2007-03-30
US60/909,315 2007-03-30
US98230907P 2007-10-24 2007-10-24
US60/982,309 2007-10-24
US12/053,015 2008-03-21
US12/053,015 US7964580B2 (en) 2007-03-30 2008-03-21 Nucleoside phosphoramidate prodrugs

Publications (2)

Publication Number Publication Date
WO2008121634A2 true WO2008121634A2 (en) 2008-10-09
WO2008121634A3 WO2008121634A3 (en) 2010-05-20

Family

ID=39808855

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2008/058183 WO2008121634A2 (en) 2007-03-30 2008-03-26 Nucleoside phosphoramidate prodrugs

Country Status (36)

Country Link
US (11) US7964580B2 (en)
EP (7) EP2933260A1 (en)
JP (8) JP5318085B2 (en)
KR (3) KR101525293B1 (en)
CN (8) CN109776637B (en)
AR (1) AR066898A1 (en)
AU (1) AU2008232827C1 (en)
BR (2) BRPI0823519A2 (en)
CA (1) CA2682230C (en)
CL (1) CL2008000902A1 (en)
CO (1) CO6260023A2 (en)
CY (2) CY1115488T1 (en)
DE (1) DE202008018643U1 (en)
DK (1) DK2203462T3 (en)
ES (3) ES2492470T3 (en)
FR (1) FR14C0082I2 (en)
HK (2) HK1206033A1 (en)
HR (1) HRP20140667T1 (en)
HU (1) HUS1400059I1 (en)
IL (3) IL201239A (en)
LT (1) LTC2203462I2 (en)
LU (1) LU92600I2 (en)
MX (1) MX2009010401A (en)
MY (1) MY147409A (en)
NL (1) NL300704I2 (en)
NO (2) NO2014029I1 (en)
NZ (2) NZ579880A (en)
PH (1) PH12014502771A1 (en)
PL (3) PL2203462T3 (en)
PT (3) PT2801580T (en)
RU (4) RU2651892C2 (en)
SG (2) SG2014011704A (en)
SI (3) SI2826784T1 (en)
TW (1) TWI357332B (en)
WO (1) WO2008121634A2 (en)
ZA (2) ZA200906647B (en)

Cited By (121)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010075517A2 (en) 2008-12-23 2010-07-01 Pharmasset, Inc. Nucleoside analogs
WO2010075554A1 (en) 2008-12-23 2010-07-01 Pharmasset, Inc. Synthesis of purine nucleosides
WO2010075549A2 (en) 2008-12-23 2010-07-01 Pharmasset, Inc. Nucleoside phosphoramidates
WO2010135569A1 (en) 2009-05-20 2010-11-25 Pharmasset, Inc. N- [ (2 ' r) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -l-alanine 1-methylethyl ester and process for its production
WO2011005860A2 (en) 2009-07-07 2011-01-13 Alnylam Pharmaceuticals, Inc. 5' phosphate mimics
WO2011123672A1 (en) 2010-03-31 2011-10-06 Pharmasset, Inc. Purine nucleoside phosphoramidate
WO2011123645A2 (en) 2010-03-31 2011-10-06 Pharmasset, Inc. Nucleoside phosphoramidates
EP2393815A2 (en) * 2009-02-06 2011-12-14 RFS Pharma, LLC. Purine nucleoside monophosphate prodrugs for treatment of cancer and viral infections
WO2012012465A1 (en) * 2010-07-19 2012-01-26 Clarke, Michael, O'neil Hanrahan Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
WO2012142523A2 (en) 2011-04-13 2012-10-18 Gilead Sciences, Inc. 1'-substituted pyrimidine n-nucleoside analogs for antiviral treatment
WO2012158811A3 (en) * 2011-05-19 2013-02-28 Rfs Pharma, Llc Purine monophosphate prodrugs for treatment of viral infections
WO2013039920A1 (en) * 2011-09-12 2013-03-21 Idenix Pharmaceuticals, Inc. Substituted carbonyloxymethylphosphoramidate compounds and pharmaceutical compositions for the treatment of viral infections
JP2013514276A (en) * 2009-12-18 2013-04-25 ベーリンガー インゲルハイム インターナショナル ゲゼルシャフト ミット ベシュレンクテル ハフツング HCV combination therapy
EP2583680A3 (en) * 2011-10-21 2013-06-12 Abbvie Inc. Mono (PSI-7977) or combination treatment of DAAs for use in treating HCV
CN103209987A (en) * 2010-09-22 2013-07-17 艾丽奥斯生物制药有限公司 Substituted nucleotide analogs
WO2013177219A1 (en) * 2012-05-22 2013-11-28 Idenix Pharmaceuticals, Inc. D-amino acid compounds for liver disease
US8618076B2 (en) 2009-05-20 2013-12-31 Gilead Pharmasset Llc Nucleoside phosphoramidates
WO2014008236A1 (en) 2012-07-03 2014-01-09 Bristol-Myers Squibb Company Process for preparing diastereomerically enriched phosphoramidate derivatives of nucleoside compounds for treatment of viral infections
WO2014058801A1 (en) * 2012-10-08 2014-04-17 Idenix Pharmaceuticals, Inc. 2'-chloro nucleoside analogs for hcv infection
WO2014078427A1 (en) * 2012-11-14 2014-05-22 Idenix Pharmaceuticals, Inc. D-alanine ester of rp-nucleoside analog
WO2014078436A1 (en) * 2012-11-14 2014-05-22 Idenix Pharmaceuticals, Inc. D-alanine ester of sp-nucleoside analog
WO2014099941A1 (en) * 2012-12-19 2014-06-26 Idenix Pharmaceuticals, Inc. 4'-fluoro nucleosides for the treatment of hcv
WO2014100505A1 (en) 2012-12-21 2014-06-26 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
PT107665A (en) * 2011-10-21 2014-07-16 Abbvie Inc METHODS FOR THE TREATMENT OF HCV COMPREHENDING AT LEAST TWO ANTIVIRAL AGENTS OF DIRECT ACTIVITY, RIBAVIRIN, BUT NOT INTERFERED
US8815829B2 (en) 2008-12-09 2014-08-26 Rfs Pharma, Llc 3′-azido purine nucleotide prodrugs for treatment of viral infections
US8822496B2 (en) 2009-10-30 2014-09-02 Boehringer Ingelheim International Gmbh Dosage regimens for HCV combination therapy
WO2014137926A1 (en) * 2013-03-04 2014-09-12 Idenix Pharmaceuticals, Inc. 3'-deoxy nucleosides for the treatment of hcv
WO2014135107A1 (en) 2013-03-08 2014-09-12 南京圣和药业有限公司 Novel nucleoside phosphoramidate compound and use thereof
US8841275B2 (en) 2010-11-30 2014-09-23 Gilead Pharmasset Llc 2′-spiro-nucleosides and derivatives thereof useful for treating hepatitis C virus and dengue virus infections
WO2014148949A1 (en) * 2013-03-22 2014-09-25 Асави, Ллс Alkyl 2-{[(2r,3s,5r)-5-(4-amino-2-oxo-2н-pyrimidin-1-yl)-3-hydroxy- tetrahydro-furan-2-yl-methoxy]-phenoxy-phosphoryl-amino}-propionates, nucleoside inhibitors of hcv ns5b rna-polymerase, and methods for producing and use thereof
US8853171B2 (en) 2008-04-23 2014-10-07 Gilead Sciences, Inc. 1′-substituted carba-nucleoside analogs for antiviral treatment
WO2014165542A1 (en) * 2013-04-01 2014-10-09 Idenix Pharmaceuticals, Inc. 2',4'-fluoro nucleosides for the treatment of hcv
US8877731B2 (en) 2010-09-22 2014-11-04 Alios Biopharma, Inc. Azido nucleosides and nucleotide analogs
US8889159B2 (en) 2011-11-29 2014-11-18 Gilead Pharmasset Llc Compositions and methods for treating hepatitis C virus
WO2014186637A1 (en) 2013-05-16 2014-11-20 Riboscience Llc 4'-fluor0-2'-methyl substituted nucleoside derivatives
WO2014197578A1 (en) * 2013-06-05 2014-12-11 Idenix Pharmaceuticals, Inc. 1',4'-thio nucleosides for the treatment of hcv
US8933053B2 (en) 2011-03-01 2015-01-13 Nucana Biomed Limited Phosphoramidate derivatives of 5-fluoro-2′-deoxyuridine for use in the treatment of cancer
JP2015503506A (en) * 2011-12-22 2015-02-02 アリオス バイオファーマ インク. Substituted nucleosides, nucleotides and analogs thereof
WO2015017713A1 (en) * 2013-08-01 2015-02-05 Idenix Pharmaceuticals, Inc. D-amino acid phosphoramidate pronucleotides of halogeno pyrimidine compounds for liver disease
WO2015034420A1 (en) 2013-09-04 2015-03-12 Medivir Ab Hcv polymerase inhibitors
WO2015053662A1 (en) * 2013-10-11 2015-04-16 Андрей Александрович ИВАЩЕНКО Substituted (2r, 3r, 5r)-3-hydroxy-(5-pyrimidin-1-yl) tetrahydrofuran-2-ylmethyl aryl phosphoramidates
US9012427B2 (en) 2012-03-22 2015-04-21 Alios Biopharma, Inc. Pharmaceutical combinations comprising a thionucleotide analog
WO2015056213A1 (en) 2013-10-17 2015-04-23 Medivir Ab Hcv polymerase inhibitors
WO2015061683A1 (en) * 2013-10-25 2015-04-30 Idenix Pharmaceuticals, Inc. D-amino acid phosphoramidate and d-alanine thiophosphoramidate pronucleotides of nucleoside compounds useful for the treatment of hcv
CN104650171A (en) * 2013-11-25 2015-05-27 天津市汉康医药生物技术有限公司 Sofosbuvir sesquihydrate compound
WO2015081297A1 (en) * 2013-11-27 2015-06-04 Idenix Pharmaceuticals, Inc. 2'-dichloro and 2'-fluoro-2'-chloro nucleoside analogues for hcv infection
RU2553996C1 (en) * 2013-11-27 2015-06-20 Андрей Александрович Иващенко Substituted (2r,3r,5r)-3-hydroxy-(5-pyrimidin-1-yl)tetrahydrofuran-2-ylmethyl aryl phosphoramidates
WO2015097605A1 (en) 2013-12-23 2015-07-02 Mylan Laboratories Ltd. Process for the preparation of sofosbuvir
WO2015099989A1 (en) 2013-12-23 2015-07-02 Gilead Pharmasset Llc Crystalline forms of antiviral sofosbuvir analogues
WO2015101183A1 (en) * 2014-01-02 2015-07-09 江苏豪森药业股份有限公司 Uracil nucleotide analogs, preparation methods therefor and uses thereof
US9085573B2 (en) 2007-03-30 2015-07-21 Gilead Pharmasset Llc Nucleoside phosphoramidate prodrugs
WO2015158317A1 (en) 2014-04-15 2015-10-22 Zentiva, K.S. Use of a l,3j5-triazin-2-yl phosphoramidate compound in the synthesis of sofosbuvir
WO2015164812A1 (en) * 2014-04-24 2015-10-29 Cocrystal Pharma, Inc. 2' -disubstituted nucleoside analogs for treatment of the flaviviridae family of viruses and cancer
RU2567854C1 (en) * 2014-11-11 2015-11-10 Александр Васильевич Иващенко Nucleoside inhibitors of rna-polymerase hcv ns5b, methods for production and use thereof
WO2016008461A1 (en) 2014-07-17 2016-01-21 Zentiva, K.S. A new form of sofosbuvir and a method of its preparation
AU2014274548B2 (en) * 2009-05-20 2016-02-04 Gilead Sciences, Inc. N- [ (2 ' R) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -L-alanine 1-methylethyl ester and process for its production
WO2016035006A1 (en) * 2014-09-01 2016-03-10 Dr. Reddy’S Laboratories Limited Novel nucleotide analogs, process for the preparation of sofosbuvir and its analogs, novel forms of sofosbuvir and solid dispersion of sofosbuvir
WO2016042576A1 (en) 2014-09-16 2016-03-24 Cadila Healthcare Limited Co-crystal of sofosbuvir and amino acid and process for preparation thereof
US9296777B2 (en) 2007-11-20 2016-03-29 Gilead Pharmasset Llc 2′,4′-substituted nucleosides as antiviral agents
US9393256B2 (en) 2011-09-16 2016-07-19 Gilead Pharmasset Llc Methods for treating HCV
WO2016128453A1 (en) 2015-02-13 2016-08-18 Sandoz Ag Pharmaceutical compositions comprising ledipasvir and sofosbuvir
US9422323B2 (en) 2012-05-25 2016-08-23 Janssen Sciences Ireland Uc Uracyl spirooxetane nucleosides
ITUB20150109A1 (en) * 2015-03-05 2016-09-05 Hc Pharma Ag USEFUL COMPOUNDS FOR THE TREATMENT OF HEPATITIS C
US9441007B2 (en) 2012-03-21 2016-09-13 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
WO2016151542A1 (en) * 2015-03-26 2016-09-29 Quimica Sintetica, S.A. Nucleoside phosphoramidates useful for the treatment of viral infections and preparation thereof
WO2016177300A1 (en) * 2015-05-07 2016-11-10 苏州旺山旺水生物医药有限公司 (2'r)-2'-deoxy-2'-halo-2'-methyl uridine derivative, and preparation method and use thereof
WO2016189040A1 (en) 2015-05-26 2016-12-01 Sandoz Ag Selective process for synthesis of nucleoside phosphoramidates
WO2016196735A2 (en) 2015-06-03 2016-12-08 Teva Pharmaceuticals International Gmbh Improved processes for the preparation of sofosbuvir and intermediates thereof
WO2016206663A1 (en) 2015-06-26 2016-12-29 Zentiva, K.S. A pharmaceutical formulation of sofosbuvir
WO2016189443A3 (en) * 2015-05-23 2017-01-12 Virupaksha Organics Limited Solid forms of nucleoside phosphoramidate
ITUB20152109A1 (en) * 2015-07-13 2017-01-13 Quim Sintetica S A PHOSPHORAMIDATE NUCLEOSIDES USEFUL FOR THE TREATMENT OF VIRAL INFECTIONS AND THEIR PREPARATION
WO2017077552A1 (en) 2015-11-03 2017-05-11 Mylan Laboratories Limited Process for the preparation of sofosbuvir
AU2016200676B2 (en) * 2009-05-20 2017-06-01 Gilead Sciences, Inc. N-[(2'R)-2 '-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl] -L-alanine 1-methylethyl ester and process for its production
US9676797B2 (en) 2015-09-02 2017-06-13 Abbvie Inc. Anti-viral compounds
KR101765997B1 (en) 2011-12-20 2017-08-07 리보사이언스 엘엘씨 2',4'-difluoro-2'-methyl substituted nucleoside derivatives as inhibitors of hcv rna replication
US9724360B2 (en) 2014-10-29 2017-08-08 Gilead Sciences, Inc. Methods for treating Filoviridae virus infections
WO2017162169A1 (en) * 2016-03-25 2017-09-28 江苏天士力帝益药业有限公司 Uridine phosphoramide prodrug, preparation method therefor, and medicinal uses thereof
WO2017184670A2 (en) 2016-04-22 2017-10-26 Gilead Sciences, Inc. Methods for treating zika virus infections
WO2017189978A1 (en) 2016-04-28 2017-11-02 Emory University Alkyne containing nucleotide and nucleoside therapeutic compositions and uses related thereto
WO2017190715A1 (en) 2016-05-05 2017-11-09 Zentiva, K.S. An amorphous form of sofosbuvir, a method of its preparation and its stabilization
WO2017205078A1 (en) 2016-05-27 2017-11-30 Gilead Sciences, Inc. Methods for treating hepatitis b virus infections using ns5a, ns5b or ns3 inhibitors
US9862743B2 (en) 2013-10-11 2018-01-09 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
WO2018013937A1 (en) 2016-07-14 2018-01-18 Atea Pharmaceuticals, Inc. Beta-d-2'-deoxy-2'-alpha-fluoro-2'-beta-c-substituted-4'-fluoro-n6-substituted-6-amino-2-substituted purine nucleotides for the treatment of hepatitis c virus infection
RU2644156C1 (en) * 2017-02-28 2018-02-08 Александр Васильевич Иващенко Prodrug of polymerase ns5b hcv inhibitor, method for its preparation and application
WO2018033593A1 (en) 2016-08-19 2018-02-22 Sandoz Ag Sofosbuvir derivatives for the treatment of hepatitis c
RU2659388C1 (en) * 2017-02-28 2018-07-02 Васильевич Иващенко Александр Nucleotides including n-[(s)-1-cyclobutoxycarbonyl]phosphoramidate fragment, their analogs and their application
WO2018134343A1 (en) 2017-01-19 2018-07-26 Sandoz Ag Synthesis of phosphoramidates
US10039779B2 (en) 2013-01-31 2018-08-07 Gilead Pharmasset Llc Combination formulation of two antiviral compounds
US10065958B2 (en) 2010-07-22 2018-09-04 Gilead Sciences, Inc. Methods and compounds for treating Paramyxoviridae virus infections
WO2019025600A1 (en) 2017-08-03 2019-02-07 Sandoz Ag Sofosbuvir hydrate
US10202412B2 (en) 2016-07-08 2019-02-12 Atea Pharmaceuticals, Inc. β-D-2′-deoxy-2′-substituted-4′-substituted-2-substituted-N6-substituted-6-aminopurinenucleotides for the treatment of paramyxovirus and orthomyxovirus infections
US10214553B2 (en) 2014-06-13 2019-02-26 Teva Pharmaceuticals International Gmbh Solid state forms of sofosbuvir
US10239910B2 (en) 2016-07-20 2019-03-26 Optimus Drugs (P) Limited Process for the preparation of sofosbuvir
US10251904B2 (en) 2015-09-16 2019-04-09 Gilead Sciences, Inc. Methods for treating arenaviridae and coronaviridae virus infections
EP3331354A4 (en) * 2016-07-28 2019-08-07 Asavi, LLC Phosphoramidate nucleoside prodrug for treating viral diseases and cancer, processes for their preparation and their use
EP3377512A4 (en) * 2015-11-16 2019-09-18 Ichorion Therapeutics, Inc. Nucleic acid prodrugs
US10526363B2 (en) 2014-08-15 2020-01-07 Merck Sharp & Dohme Corp. Substituted phosphoramidate compounds and uses thereof
US10675296B2 (en) 2017-07-11 2020-06-09 Gilead Sciences, Inc. Compositions comprising an RNA polymerase inhibitor and cyclodextrin for treating viral infections
US10682368B2 (en) 2017-03-14 2020-06-16 Gilead Sciences, Inc. Methods of treating feline coronavirus infections
US10682369B2 (en) 2017-09-21 2020-06-16 Riboscience Llc 4′-fluoro-2′-methyl substituted nucleoside derivatives as inhibitors of HCV RNA replication
US10696708B2 (en) 2013-06-26 2020-06-30 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
USRE48171E1 (en) 2012-03-21 2020-08-25 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US10836787B2 (en) 2017-05-01 2020-11-17 Gilead Sciences, Inc. Crystalline forms of (S)-2-ethylbutyl 2-(((S)-(((2R,3S,4R,5R)-5- (4-aminopyrrolo[2,1-f] [1,2,4]triazin-7-yl)-5-cyano-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)(phenoxy) phosphoryl)amino)propanoate
EP3750544A2 (en) 2011-11-30 2020-12-16 Emory University Jak inhibitors for use in the prevention or treatment of viral infection
US10912814B2 (en) 2016-06-02 2021-02-09 Gilead Pharmasset Llc Combination formulation of three antiviral compounds
US10953030B2 (en) 2013-05-16 2021-03-23 Riboscience Llc 4′-fluoro-2′-methyl substituted nucleoside derivatives as inhibitors of HCV RNA replication
US10988498B2 (en) 2009-09-21 2021-04-27 Gilead Sciences, Inc. Processes and intermediates for the preparation of 1′-substituted carba-nucleoside analogs
US11116783B2 (en) 2013-08-27 2021-09-14 Gilead Pharmasset Llc Combination formulation of two antiviral compounds
WO2021202669A2 (en) 2020-04-01 2021-10-07 Reyoung Corporation Nucleoside and nucleotide conjugate compounds and uses thereof
US11203599B2 (en) 2014-06-11 2021-12-21 Gilead Pharmasset Llc Solid forms of an antiviral compound
RU2764767C2 (en) * 2015-03-06 2022-01-21 Атеа Фармасьютикалс, Инк. β-D-2ʹ-DEOXY-2ʹ-α-FLUORO-2ʹ-β-C-SUBSTITUTED-2-MODIFIED-N6-SUBSTITUTED PURINE NUCLEOTIDES FOR TREATMENT OF DISEASES CAUSED BY HCV
US11364257B2 (en) 2016-06-24 2022-06-21 Emory University Phosphoramidates for the treatment of hepatitis B virus
US11414451B2 (en) 2017-09-18 2022-08-16 NuCana plc Floxuridine synthesis
US11447518B2 (en) 2014-12-15 2022-09-20 Emory University Phosphoramidates for the treatment of hepatitis B virus
US11491169B2 (en) 2020-05-29 2022-11-08 Gilead Sciences, Inc. Remdesivir treatment methods
US11613553B2 (en) 2020-03-12 2023-03-28 Gilead Sciences, Inc. Methods of preparing 1′-cyano nucleosides
US11660307B2 (en) 2020-01-27 2023-05-30 Gilead Sciences, Inc. Methods for treating SARS CoV-2 infections
US11701372B2 (en) 2020-04-06 2023-07-18 Gilead Sciences, Inc. Inhalation formulations of 1'-cyano substituted carba-nucleoside analogs
US11780844B2 (en) 2022-03-02 2023-10-10 Gilead Sciences, Inc. Compounds and methods for treatment of viral infections
US11814406B2 (en) 2020-08-27 2023-11-14 Gilead Sciences, Inc. Compounds and methods for treatment of viral infections
US11939347B2 (en) 2020-06-24 2024-03-26 Gilead Sciences, Inc. 1′-cyano nucleoside analogs and uses thereof

Families Citing this family (134)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
MY164523A (en) 2000-05-23 2017-12-29 Univ Degli Studi Cagliari Methods and compositions for treating hepatitis c virus
CA2410579C (en) 2000-05-26 2010-04-20 Jean-Pierre Sommadossi Methods and compositions for treating flaviviruses and pestiviruses
KR100828453B1 (en) 2001-01-22 2008-05-13 머크 앤드 캄파니 인코포레이티드 Nucleoside derivatives as inhibitors of RNA-dependent RNA viral polymerase
MXPA05005192A (en) 2002-11-15 2005-09-08 Idenix Cayman Ltd 2aCOE-BRANCHED NUCLEOSIDES AND FLAVIVIRIDAE.
BRPI0419345B8 (en) 2003-05-30 2021-05-25 Gilead Pharmasset Llc use of (2'r)-2'-deoxy-2'-fluor-2'-c-methyl nucleoside and a pharmaceutical composition comprising it
WO2006063149A1 (en) 2004-12-09 2006-06-15 Regents Of The University Of Minnesota Nucleosides with antiviral and anticancer activity
GB0623493D0 (en) 2006-11-24 2007-01-03 Univ Cardiff Chemical compounds
US8173621B2 (en) 2008-06-11 2012-05-08 Gilead Pharmasset Llc Nucleoside cyclicphosphates
EA201190178A1 (en) * 2009-03-20 2012-06-29 Алиос Биофарма, Инк. REPLACED NUCLEOSIDE AND NUCLEOTIC ANALOGUES
EP3626716A1 (en) 2009-05-13 2020-03-25 Gilead Pharmasset LLC Antiviral compounds
EP2483288B1 (en) * 2009-09-29 2016-11-16 Janssen Products, L.P. Phosphoramidate derivatives of nucleosides
US8563530B2 (en) 2010-03-31 2013-10-22 Gilead Pharmassel LLC Purine nucleoside phosphoramidate
WO2011133212A1 (en) * 2010-04-20 2011-10-27 New York University Methods, compounds and pharmaceutical compositions for treating anxiety and mood disorders
WO2012094248A1 (en) * 2011-01-03 2012-07-12 Nanjing Molecular Research, Inc. O-(substituted benzyl) phosphoramidate compounds and therapeutic use
WO2012125900A1 (en) 2011-03-16 2012-09-20 Enanta Pharmaceuticals, Inc. 2'-allene-substituted nucleoside derivatives
CN103842369A (en) 2011-03-31 2014-06-04 埃迪尼克斯医药公司 Compounds and pharmaceutical compositions for the treatment of viral infections
US20130018011A1 (en) * 2011-06-10 2013-01-17 Hassan Javanbakht Method of treating dengue fever
EP2734535A4 (en) * 2011-07-19 2014-10-22 Nanjing Molecular Res Inc 2',3'-DIDEOXY-2'-alpha-FLUORO-2'-beta-C-METHYLNUCLEOSIDES AND PRODRUGS THEREOF
CN107353316B (en) 2011-09-30 2020-08-18 塔夫斯大学 Uridine diphosphate derivatives, compositions and methods for treating neurodegenerative diseases
EP2768838A1 (en) 2011-10-14 2014-08-27 IDENIX Pharmaceuticals, Inc. Substituted 3',5'-cyclic phosphates of purine nucleotide compounds and pharmaceutical compositions for the treatment of viral infections
US8492386B2 (en) 2011-10-21 2013-07-23 Abbvie Inc. Methods for treating HCV
US8466159B2 (en) 2011-10-21 2013-06-18 Abbvie Inc. Methods for treating HCV
BR112014010295A2 (en) 2011-10-31 2017-04-18 Gilead Pharmassett Llc methods and compositions for the treatment of hepatitis c virus
MD4430C1 (en) 2011-11-29 2017-03-31 Gilead Pharmasset Llc Compositions and methods for treating hepatitis C virus
SI2794628T1 (en) * 2011-12-20 2017-07-31 Riboscience Llc 4'-azido-3'-fluoro substituted nucleoside derivatives as inhibitors of hcv rna replication
US8980865B2 (en) 2011-12-22 2015-03-17 Alios Biopharma, Inc. Substituted nucleotide analogs
MX2014008008A (en) * 2011-12-29 2014-08-21 Abbvie Inc Solid compositions comprising an hcv inhibitor.
US9303652B2 (en) 2012-01-05 2016-04-05 Archipelago Group Llc Electric blower operable to provide combustion air to a fire
EP2814816A2 (en) 2012-02-14 2014-12-24 University Of Georgia Research Foundation, Inc. Spiro [2.4]heptanes for treatment of flaviviridae infections
US8916538B2 (en) 2012-03-21 2014-12-23 Vertex Pharmaceuticals Incorporated Solid forms of a thiophosphoramidate nucleotide prodrug
WO2013173759A2 (en) * 2012-05-17 2013-11-21 Enanta Pharmaceuticals, Inc. Macrocyclic nucleoside phosphoramidate derivatives
US9296778B2 (en) 2012-05-22 2016-03-29 Idenix Pharmaceuticals, Inc. 3′,5′-cyclic phosphate prodrugs for HCV infection
WO2013177188A1 (en) 2012-05-22 2013-11-28 Idenix Pharmaceuticals, Inc. 3',5'-cyclic phosphoramidate prodrugs for hcv infection
US9206412B2 (en) * 2012-05-31 2015-12-08 Colorado State University Research Foundation Thioxothiazolidine inhibitors
WO2013187978A1 (en) * 2012-06-16 2013-12-19 Nanjing Molecular Research, Inc. Double-liver-targeting phosphoramidate and phosphonoamidate prodrugs
WO2014047117A1 (en) 2012-09-18 2014-03-27 Bristol-Myers Squibb Company Process for preparing phosphoramidate derivatives of nucleoside compounds for treatment of viral infections
EP2900682A1 (en) 2012-09-27 2015-08-05 IDENIX Pharmaceuticals, Inc. Esters and malonates of sate prodrugs
JP6523958B2 (en) 2012-09-28 2019-06-05 タフツ・ユニバーシティ Uridine diphosphate derivatives, prodrugs, compositions and their use
US10723754B2 (en) 2012-10-22 2020-07-28 Idenix Pharmaceuticals Llc 2′,4′-bridged nucleosides for HCV infection
MX2015006195A (en) * 2012-11-16 2015-12-08 Univ Cardiff Process for preparing nucleoside prodrugs.
US10034893B2 (en) * 2013-02-01 2018-07-31 Enanta Pharmaceuticals, Inc. 5, 6-D2 uridine nucleoside/tide derivatives
US20140249101A1 (en) 2013-03-04 2014-09-04 Gilead Pharmasset Llc Methods for treating hepatitis c virus infection
US9339541B2 (en) 2013-03-04 2016-05-17 Merck Sharp & Dohme Corp. Thiophosphate nucleosides for the treatment of HCV
EP2970357A1 (en) 2013-03-13 2016-01-20 IDENIX Pharmaceuticals, Inc. Amino acid phosphoramidate pronucleotides of 2'-cyano, azido and amino nucleosides for the treatment of hcv
JP6591957B2 (en) 2013-03-13 2019-10-16 タフツ・ユニバーシティ Uridine nucleoside derivatives, compositions and methods of use
US10138265B2 (en) 2013-03-13 2018-11-27 Tufts University Uridine nucleoside derivatives, compositions and methods of use
EP2984097B1 (en) 2013-04-12 2017-03-29 Achillion Pharmaceuticals, Inc. Highly active nucleoside derivative for the treatment of hcv
WO2014197400A1 (en) 2013-06-04 2014-12-11 Gilead Pharmasset Llc Preventing and treating recurrence of hcv infection after liver transplant
CN104231023B (en) * 2013-06-06 2019-02-05 南京汇诚制药有限公司 Tricyclic fused heterocycle nucleoside phosphoramidate compound, preparation method and application
DK3043803T3 (en) 2013-09-11 2022-08-01 Univ Emory Nucleotide and nucleoside compounds and their applications
US9943604B2 (en) 2013-09-20 2018-04-17 Ionis Pharmaceuticals, Inc. Targeted therapeutic nucleosides and their use
CN104447923B (en) * 2013-09-23 2018-03-30 中国药科大学 Methyl nucleoside derivatives of 2 ' deoxidation, 2 ' fluorine 2 ' and preparation method thereof and the purposes in pharmacy
WO2015084741A2 (en) 2013-12-02 2015-06-11 Gilead Pharmasset Llc Methods of treating hepatitis c virus infection in subjects with cirrhosis
US20170015696A1 (en) 2014-02-20 2017-01-19 Ratiopharm Gmbh Solid state forms of sofosbuvir
CN103804446A (en) * 2014-02-27 2014-05-21 苏州东南药业股份有限公司 Preparation method of 3,5-dibenzoyl-2-deoxy-2-fluoro-2-methyl-D-ribo-gamma-lactone
US20170066779A1 (en) 2014-03-05 2017-03-09 Idenix Pharmaceuticals Llc Solid forms of a flaviviridae virus inhibitor compound and salts thereof
US20170135990A1 (en) 2014-03-05 2017-05-18 Idenix Pharmaceuticals Llc Pharmaceutical compositions comprising a 5,5-fused heteroarylene flaviviridae inhibitor and their use for treating or preventing flaviviridae infection
US20170066795A1 (en) * 2014-03-05 2017-03-09 Idenix Pharmaceuticals Llc Solid prodrug forms of 2'-chloro-2'-methyl uridine for hcv
EP3131914B1 (en) 2014-04-16 2023-05-10 Idenix Pharmaceuticals LLC 3'-substituted methyl or alkynyl nucleosides for the treatment of hcv
EA201692507A1 (en) 2014-06-23 2017-04-28 Сановель Илач Санайи Ве Тиджарет А.Ш. PHARMACEUTICAL COMBINATIONS OF SOFOSBUVIR AND RIBAVIRIN
US20170151272A1 (en) 2014-06-23 2017-06-01 Sanovel Ilac Sanayi Ve Ticaret Anonim Sirketi A novel pharmaceutical composition of sofosbuvir and ribavirin
US20170128482A1 (en) 2014-06-23 2017-05-11 Sanovel Ilac Sanayi Ve Ticaret A.S. Modified release pharmaceutical compositions of sofosbuvir and ribavirin
CN105315319B (en) * 2014-07-30 2020-11-20 南京圣和药业股份有限公司 Hepatitis C virus inhibitor and application thereof
EP3174888A1 (en) 2014-08-01 2017-06-07 Lupin Limited A process for the preparation of nucleoside phosphoramidate
WO2016033164A1 (en) 2014-08-26 2016-03-03 Enanta Pharmaceuticals, Inc. Nucleoside and nucleotide derivatives
WO2016038542A2 (en) 2014-09-10 2016-03-17 Mylan Laboratories Limited Polymorphic forms of sofosbuvir
WO2016064797A1 (en) * 2014-10-20 2016-04-28 Merck Sharp & Dohme Corp. Process for making nucleoside phosphoramidate compounds
WO2016069975A1 (en) * 2014-10-31 2016-05-06 Cocrystal Pharma, Inc. 2',2'-dihalo nucleoside analogs for treatment of the flaviviridae family of viruses and cancer
WO2016073756A1 (en) 2014-11-06 2016-05-12 Enanta Pharmaceuticals, Inc. Deuterated nucleoside/tide derivatives
WO2016074596A1 (en) * 2014-11-10 2016-05-19 南京曼杰生物科技有限公司 Nucleoside phosphoramidate derivative and application thereof
WO2016078582A1 (en) * 2014-11-20 2016-05-26 南京曼杰生物科技有限公司 Novel nucleoside phosphoramidate derivatives and applications thereof
US9732110B2 (en) 2014-12-05 2017-08-15 Enanta Pharmaceuticals, Inc. Nucleoside and nucleotide derivatives
CN106146588A (en) * 2015-03-26 2016-11-23 常州制药厂有限公司 A kind of preparation method of Suo Feibuwei
CN106188192B (en) * 2015-04-29 2019-09-10 刘沛 Nucleosides phosphoramidic acid/the phosphate derivatives and its medical usage of the amino-acid ester containing D-
CN104829672B (en) * 2015-05-19 2018-03-13 江苏福瑞生物医药有限公司 A kind of synthetic method of pharmaceutical intermediate
MX2018001073A (en) 2015-08-06 2018-06-12 Chimerix Inc Pyrrolopyrimidine nucleosides and analogs thereof useful as antiviral agents.
EP3133062A1 (en) 2015-08-19 2017-02-22 Zaklady Farmaceutyczne Polpharma SA Process for the preparation of a pharmaceutical agent
WO2017029408A1 (en) 2015-08-20 2017-02-23 Ratiopharm Gmbh Solid state forms of sofosbuvir
CN105061535A (en) * 2015-09-02 2015-11-18 江苏科本医药化学有限公司 Synthetic method of sofosbuvir intermediate
CN106674319B (en) * 2015-11-06 2020-04-21 博瑞生物医药(苏州)股份有限公司 Compound for treating hepatitis C
CN106674320B (en) * 2015-11-06 2020-04-21 博瑞生物医药(苏州)股份有限公司 HCV (hepatitis C virus) treatment medicine
CN106674318B (en) * 2015-11-06 2020-04-21 博瑞生物医药(苏州)股份有限公司 NS5B polymerase inhibitor
WO2017093973A1 (en) * 2015-12-02 2017-06-08 Sun Pharmaceutical Industries Limited Process for the preparation of pure sofosbuvir
ITUB20161079A1 (en) 2016-02-25 2017-08-25 Hc Pharma Ag PROCEDURE FOR THE PREPARATION OF SOFOSBUVIR
US10738071B2 (en) 2016-03-17 2020-08-11 Mylan Laboratories Limited Polymorphic forms of sofosbuvir
EP3452447A4 (en) 2016-05-03 2019-12-18 The Regents of The University of California Inhibitors of ires-mediated protein synthesis
WO2017197046A1 (en) 2016-05-10 2017-11-16 C4 Therapeutics, Inc. C3-carbon linked glutarimide degronimers for target protein degradation
EP3454862B1 (en) 2016-05-10 2024-09-11 C4 Therapeutics, Inc. Spirocyclic degronimers for target protein degradation
WO2017197055A1 (en) 2016-05-10 2017-11-16 C4 Therapeutics, Inc. Heterocyclic degronimers for target protein degradation
CN107501247A (en) * 2016-06-14 2017-12-22 安徽贝克联合制药有限公司 A kind of preparation method of uridine analog derivative
WO2017223024A1 (en) * 2016-06-20 2017-12-28 Merck Sharp & Dohme Corp. Use of cyclic phosphate substituted nucleoside derivatives for the treatment of viral diseases
SI3512863T1 (en) 2016-09-07 2022-04-29 Atea Pharmaceuticals, Inc. 2'-substituted-n6-substituted purine nucleotides for rna virus treatment
WO2018078536A1 (en) 2016-10-26 2018-05-03 Lupin Limited Stable solid dispersion of sofosbuvir and process for preparation thereof
WO2018119013A1 (en) 2016-12-22 2018-06-28 Merck Sharp & Dohme Corp. Antiviral aliphatic ester prodrugs of tenofovir
US11261152B2 (en) 2017-01-20 2022-03-01 The Regents Of The University Of California Inhibitors of the N-terminal domain of the androgen receptor
SG11201906163TA (en) 2017-02-01 2019-08-27 Atea Pharmaceuticals Inc Nucleotide hemi-sulfate salt for the treatment of hepatitis c virus
RU2650610C1 (en) 2017-02-28 2018-04-16 Васильевич Иващенко Александр Antiviral composition and method of its application
RU2656228C9 (en) * 2017-06-13 2019-04-16 Олег Ростиславович Михайлов WEAKLY CRYSTALLISED β-MODIFICATION OF (S)-ISOPROPYL 2-((S)-(((2R,3R,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-(2H)-YL)-4-FLUORO-3-HYDROXY-4-METHYLTETRAHYDROFURAN-2-YL)METHOXY)-(PHENOXY)PHOSPHORYLAMINO)PROPANOATE, METHOD FOR PRODUCTION THEREOF AND PHARMACEUTICAL COMPOSITION BASED THEREON
GB201709471D0 (en) 2017-06-14 2017-07-26 Nucana Biomed Ltd Diastereoselective synthesis of hosphate derivatives
KR20240033119A (en) 2017-06-30 2024-03-12 더 리전트 오브 더 유니버시티 오브 캘리포니아 Compositions and methods of modulation of hair growth
US11111264B2 (en) 2017-09-21 2021-09-07 Chimerix, Inc. Morphic forms of 4-amino-7-(3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-methyl-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide and uses thereof
JP2021509899A (en) * 2018-01-05 2021-04-08 セレコー,インコーポレーテッド Nucleotide prodrug
US11708329B2 (en) 2018-01-30 2023-07-25 The Regents Of The University Of California Inhibitors of the WNT/beta-catenin pathway
EP3773753A4 (en) 2018-04-10 2021-12-22 ATEA Pharmaceuticals, Inc. Treatment of hcv infected patients with cirrhosis
NL2021049B1 (en) 2018-06-04 2019-12-11 Academisch Ziekenhuis Leiden Use of 6'-fluoro-neplanocin a derivatives against chikungunya virus
WO2020006489A1 (en) 2018-06-29 2020-01-02 The Regents Of The University Of California New molecular tweezers against neurological disorders and viral infections
AU2019310595B2 (en) 2018-07-27 2022-11-24 1200 Pharma Llc CDK inhibitors and uses thereof
IL280639B (en) 2018-09-17 2022-07-01 Yungjin Pharmaceutical Co Ltd Novel thiazole derivatives and pharmaceutically acceptable salts thereof
CN114127072B (en) 2019-03-25 2024-10-11 加利福尼亚技术学院 PRMT5 inhibitors and uses thereof
CN114096544A (en) 2019-05-20 2022-02-25 加州理工学院 KRAS G12C inhibitors and uses thereof
WO2021142221A1 (en) 2020-01-10 2021-07-15 The Regents Of The University Of California Compositions and methods for the treatment of neurodegenerative diseases
US10874687B1 (en) 2020-02-27 2020-12-29 Atea Pharmaceuticals, Inc. Highly active compounds against COVID-19
EP4125810A1 (en) 2020-03-22 2023-02-08 InspirMed Corp. Composition of antiviral agent for use in prophylactic or post-exposure treatment of infectious or respiratory diseases
CN111467363A (en) * 2020-04-07 2020-07-31 中国科学院深圳先进技术研究院 Application of sofosbuvir in preparation of medicine for preventing and treating coronavirus
WO2021263072A1 (en) 2020-06-25 2021-12-30 Dana-Farber Cancer Institute, Inc. Methods of treating disease
US20230271925A1 (en) 2020-07-07 2023-08-31 ILAb Co., Ltd. Novel tnf activity inhibitor compound, and pharmaceutically acceptable salt thereof
CA3191166A1 (en) 2020-08-10 2022-02-17 Dana-Farber Cancer Institute, Inc. Substituted 3-amino-4-methylbenzenesulfonamides as small molecule inhibitors of ubiquitin-specific protease 28
AU2021325872A1 (en) 2020-08-10 2023-03-16 Dana-Farber Cancer Institute, Inc. Substituted 1,2,4-oxadiazoles as small molecule inhibitors of ubiquitin-specific protease 28
AU2021326457A1 (en) 2020-08-10 2023-03-16 Dana-Farber Cancer Institute, Inc. Fused tricyclic pyrimidine-thieno-pyridine small molecule inhibitors of ubiquitin-specific protease 28
WO2022076903A1 (en) * 2020-10-09 2022-04-14 Atea Pharmaceuticals, Inc. Niran interfering drugs for sars-cov-2 mutant therapy
WO2022087433A1 (en) 2020-10-23 2022-04-28 Dana-Farber Cancer Institute, Inc. Covalent inhibitors of creatine kinase (ck) and uses thereof for treating and preventing cancer
US20240058344A1 (en) 2020-12-18 2024-02-22 Cornell University Methods of treating neurodegenerative disorders and stat3-linked cancers using suppressors of electron leak
KR20230129455A (en) 2020-12-21 2023-09-08 코넬 유니버시티 Peptide-Linked Drug Delivery Systems
WO2022150574A1 (en) 2021-01-08 2022-07-14 Cornell University Inhibitors of mycobacterium tuberculosis lipoamide dehydrogenase
US20240190809A1 (en) 2021-05-11 2024-06-13 Awakn Ls Europe Holdings Limited Therapeutic aminoindane compounds and compositions
AU2022279234A1 (en) 2021-05-21 2023-12-07 Gilead Sciences, Inc. Pentacyclic derivatives as zika virus inhibitors
US20240197652A1 (en) 2021-05-25 2024-06-20 Awakn Ls Europe Holdings Limited Ketamine in the treatment of behavioral addictions
WO2023028091A1 (en) 2021-08-23 2023-03-02 Alexander Shulgin Research Institute Deuterated empathogens
US11541071B1 (en) 2021-12-16 2023-01-03 Ascletis BioScience Co., Ltd Nucleoside derivatives and methods of use thereof
WO2023139163A1 (en) 2022-01-19 2023-07-27 Awakn Ls Europe Holdings Limited 1,3-benzodioxole esters and their therapeutic use
WO2023156565A1 (en) 2022-02-16 2023-08-24 Awakn Ls Europe Holdings Limited Bridged ring compounds and their therapeutic use as cns agents
WO2023250157A1 (en) 2022-06-24 2023-12-28 Cornell University Inhibitors of mycobacterium tuberculosis lipoamide dehydrogenase
WO2024013209A1 (en) 2022-07-13 2024-01-18 Astrazeneca Ab Pcsk9 inhibitors and methods of use thereof
WO2024134270A1 (en) 2022-12-19 2024-06-27 Prepaire Labs Limited Method to identify and alleviate the symptoms of parkinsonism/parkinson's disease

Citations (77)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US2759300A (en) 1954-08-11 1956-08-21 Pest Control Ltd Method and means for introducing a predetermined amount of a poisonous material beneath the surface of the soil
US5192549A (en) 1988-09-28 1993-03-09 Yissum Research Development Company Of The Hebrew University Of Jerusalem Method of amphiphatic drug loading in liposomes by pH gradient
US5376380A (en) 1990-08-21 1994-12-27 Daiichi Pharmaceutical Co., Ltd. Method of producing liposomal products from freeze or spray-dried preparations of liposomes
WO1997012033A1 (en) 1995-09-27 1997-04-03 Emory University Recombinant hepatitis c virus rna replicase
WO2000006529A1 (en) 1998-07-27 2000-02-10 Istituto Di Ricerche Di Biologia Molecolare P Angeletti S.P.A. Diketoacid-derivatives as inhibitors of polymerases
US6060080A (en) 1990-07-16 2000-05-09 Daiichi Pharmaceutical Co., Ltd. Liposomal products
US6132763A (en) 1988-10-20 2000-10-17 Polymasc Pharmaceuticals Plc Liposomes
US6180134B1 (en) 1993-03-23 2001-01-30 Sequus Pharmaceuticals, Inc. Enhanced ciruclation effector composition and method
WO2002057287A2 (en) 2001-01-22 2002-07-25 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2003006490A1 (en) 2001-07-11 2003-01-23 Vertex Pharmaceuticals Incorporated Bridged bicyclic serine protease inhibitors
WO2003010141A2 (en) 2001-07-25 2003-02-06 Boehringer Ingelheim (Canada) Ltd. Hepatitis c virus polymerase inhibitors with a heterobicyclic structure
WO2003037895A1 (en) 2001-11-02 2003-05-08 Glaxo Group Limited 4-(6-membered)-heteroaryl acyl pyrrolidine derivatives as hcv inhibitors
WO2003064456A1 (en) 2002-02-01 2003-08-07 Boehringer Ingelheim International Gmbh Tripeptides having a hydroxyproline ether of a substituted quinoline for the inhibition of ns3 (hepatitis c)
US20030187018A1 (en) 2002-02-01 2003-10-02 Boehringer Ingelheim International Gmbh Hepatitis C inhibitor tri-peptides
WO2003101993A1 (en) 2002-06-04 2003-12-11 Neogenesis Pharmaceuticals, Inc. Pyrazolo` 1,5a! pyrimidine compounds as antiviral agents
WO2003105770A2 (en) 2002-06-17 2003-12-24 Merck & Co., Inc. Carbocyclic nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2004000858A2 (en) 2002-06-21 2003-12-31 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2004003138A2 (en) 2002-06-27 2004-01-08 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2004002977A1 (en) 2002-07-01 2004-01-08 Pharmacia & Upjohn Company Llc Inhibitors of hcv ns5b polymerase
WO2004002944A1 (en) 2002-07-01 2004-01-08 Pharmacia & Upjohn Company Inhibitors of hcv ns5b polymerase
WO2004009020A2 (en) 2002-07-24 2004-01-29 Merck & Co., Inc. Pyrrolopyrimidine thionucleoside analogs as antivirals
WO2004014852A2 (en) 2002-08-12 2004-02-19 Bristol-Myers Squibb Company Iminothiazolidinones as inhibitors of hcv replication
WO2004035571A1 (en) 2002-10-15 2004-04-29 Rigel Pharmaceuticals, Inc. Substituted indoles and their use as hcv inhibitors
WO2004041201A2 (en) 2002-11-01 2004-05-21 Viropharma Incorporated Benzofuran compounds, compositions and methods for treatment and prophylaxis of hepatitis c viral infections and associated diseases
WO2004065367A1 (en) 2003-01-22 2004-08-05 Boehringer Ingelheim International Gmbh Viral polymerase inhibitors
US6784166B2 (en) 2001-06-12 2004-08-31 Syntex (U.S.A.) Llc 4′-substituted nucleoside derivatives as inhibitors of HCV RNA replication.
WO2004094452A2 (en) 2003-04-16 2004-11-04 Bristol-Myers Squibb Company Macrocyclic isoquinoline peptide inhibitors of hepatitis c virus
WO2004096210A1 (en) 2003-05-01 2004-11-11 Glaxo Group Limited Acylated indoline and tetrahydroquinoline derivatives as hcv inhibitors
US20040229840A1 (en) 2002-10-29 2004-11-18 Balkrishen Bhat Nucleoside derivatives as inhibitors of RNA-dependent RNA viral polymerase
US20050009737A1 (en) 2003-05-30 2005-01-13 Jeremy Clark Modified fluorinated nucleoside analogues
WO2005021568A2 (en) 2003-08-27 2005-03-10 Biota, Inc. Novel tricyclic nucleosides or nucleotides as therapeutic agents
WO2005028502A1 (en) 2003-09-18 2005-03-31 Vertex Pharmaceuticals, Incorporated Inhibitors of serine proteases, particularly hcv ns3-ns4a protease
WO2005037214A2 (en) 2003-10-14 2005-04-28 Intermune, Inc. Macrocyclic carboxylic acids and acylsulfonamides as inhibitors of hcv replication
US20050098125A1 (en) 2002-07-01 2005-05-12 Thomas Hathaway Valve lash adjustment apparatus and method
US20050154056A1 (en) 2003-11-07 2005-07-14 Pharmacia & Upjohn Company Inhibitors of HCV NS5B polymerase
WO2005067900A2 (en) 2004-01-06 2005-07-28 Achillion Pharmaceuticals, Inc. Azabenzofuran substituted thioureas as inhibitors of viral replication
WO2005095403A2 (en) 2004-03-30 2005-10-13 Intermune, Inc. Macrocyclic compounds as inhibitors of viral replication
WO2005103045A1 (en) 2004-04-22 2005-11-03 Glaxo Group Limited Acyl dihydro pyrrole derivatives as hcv inhibitors
US20050267018A1 (en) 2003-10-14 2005-12-01 Blatt Lawrence M Macrocyclic compounds as inhibitors of viral replication
WO2005123087A2 (en) 2004-06-15 2005-12-29 Merck & Co., Inc. C-purine nucleoside analogs as inhibitors of rna-dependent rna viral polymerase
WO2006012078A2 (en) 2004-06-24 2006-02-02 Merck & Co., Inc. Nucleoside aryl phosphoramidates for the treatment of rna-dependent rna viral infection
US20060040890A1 (en) 2004-08-23 2006-02-23 Roche Palo Alto Llc Anti-viral nucleosides
US20060040927A1 (en) 2004-08-23 2006-02-23 Roche Palo Alto Llc Heterocyclic antiviral compounds
WO2006020082A1 (en) 2004-08-09 2006-02-23 Bristol-Myers Squibb Company Inhibitors of hcv replication
WO2006035061A1 (en) 2004-09-30 2006-04-06 Tibotec Pharmaceuticals Ltd. Hcv inhibiting bi-cyclic pyrimidines
US20060122146A1 (en) 2004-09-14 2006-06-08 Byoung-Kwon Chun Preparation of 2'-fluoro-2'-alkyl-substituted or other optionally substituted ribofuranosyl pyrimidines and purines and their derivatives
WO2006065590A2 (en) 2004-12-16 2006-06-22 Xtl Biopharmaceuticals Inc. Pyridine and pyrimidine antiviral compositions
WO2006065335A2 (en) 2004-10-21 2006-06-22 Merck & Co., Inc. Fluorinated pyrrolo[2,3-d]pyrimidine nucleosides for the treatment of rna-dependent rna viral infection
US20060142238A1 (en) 2003-07-21 2006-06-29 Mcguigan Christopher Chemical compounds
US20060166964A1 (en) 2004-08-09 2006-07-27 Hudyma Thomas W Inhibitors of HCV replication
US20060194749A1 (en) 2005-02-28 2006-08-31 Genelabs Technologies, Inc. Tricyclic-nucleoside prodrugs for treating viral infections
US20060199783A1 (en) 2004-07-21 2006-09-07 Pharmassett, Inc. Preparation of alkyl-substituted 2-deoxy-2-fluoro-D-ribofuranosyl pyrimidines and purines and their derivatives
WO2006093801A1 (en) 2005-02-25 2006-09-08 Abbott Laboratories Thiadiazine derivatives useful as anti-infective agents
WO2006100310A1 (en) 2005-03-25 2006-09-28 Tibotec Pharmaceuticals Ltd Heterobicylic inhibitors of hcv
US20060241064A1 (en) 2005-04-25 2006-10-26 Genelabs Technologies, Inc. Nucleoside compounds for treating viral infections
WO2006120251A1 (en) 2005-05-12 2006-11-16 Tibotec Pharmaceuticals Ltd. Pteridines useful as hcv inhibitors and methods for the preparation thereof
WO2006120252A2 (en) 2005-05-12 2006-11-16 Tibotec Pharmaceuticals Ltd. Pyrido[2,3-d]pyrimidines useful as hcv inhibitors, and methods for the preparation thereof
US20060276511A1 (en) 2005-06-06 2006-12-07 Michael Serrano-Wu Inhibitors of HCV replication
WO2007002602A2 (en) 2005-06-27 2007-01-04 Depuy Spine, Inc. Intervertebral disc prosthesis and associated methods
WO2007014922A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007014921A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007014920A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007014926A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007014925A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocylic inhibitors of hepatitis c virus
WO2007015824A2 (en) 2005-07-25 2007-02-08 Intermune, Inc. Novel macrocyclic inhibitors of hepatitis c virus replication
WO2007039145A1 (en) 2005-09-23 2007-04-12 Glaxo Group Limited C (2) -heteroarylmethyl-c (4) -pyrazinyl-2-yl acyl pyrrolidine compounds and their use for treating viral infections, especially hepatitis c virus
WO2007039142A1 (en) 2005-09-23 2007-04-12 Glaxo Group Limited C (2) -heteroarylmethyl-c (4) -methoxymethyl acyl pyrrolidine compounds and their use for treating viral infections, especially hepatitis c virus
WO2007070556A2 (en) 2005-12-12 2007-06-21 Genelabs Technologies, Inc. N-(6-membered aromatic ring)-amido anti-viral compounds
WO2007076034A2 (en) 2005-12-21 2007-07-05 Abbott Laboratories Anti-viral compounds
WO2007088148A1 (en) 2006-02-01 2007-08-09 Smithkline Beecham Corporation Derivatives of thiophene carboxilic acid as antiviral agent
WO2007092000A1 (en) 2006-02-06 2007-08-16 Bristol-Myers Squibb Company Inhibitors of hcv replication
WO2007095269A2 (en) 2006-02-14 2007-08-23 Merck & Co., Inc. Nucleoside aryl phosphoramidates for the treatment of rna-dependent rna viral infection
WO2007093901A1 (en) 2006-02-17 2007-08-23 Pfizer Limited 3 -deazapurine derivatives as tlr7 modulators
US20070197463A1 (en) 2005-12-09 2007-08-23 Pharmasset, Inc. Antiviral nucleosides
US20070275947A1 (en) 2006-05-25 2007-11-29 Bristol-Myers Squibb Company Cyclopropyl Fused Indolobenzazepine HCV NS5B Inhibitors
EP1881001A1 (en) 2006-07-20 2008-01-23 Tibotec Pharmaceuticals Ltd. HCV NS-3 serine protease inhibitors
WO2008010921A2 (en) 2006-07-07 2008-01-24 Gilead Sciences, Inc. Modulators of pharmacokinetic properties of therapeutics

Family Cites Families (228)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US2007275A (en) 1933-01-09 1935-07-09 Elizabeth Q Kendall Ingot stripper
USRE29835E (en) 1971-06-01 1978-11-14 Icn Pharmaceuticals 1,2,4-Triazole nucleosides
US3798209A (en) 1971-06-01 1974-03-19 Icn Pharmaceuticals 1,2,4-triazole nucleosides
US3852267A (en) 1972-08-04 1974-12-03 Icn Pharmaceuticals Phosphoramidates of 3{40 ,5{40 -cyclic purine nucleotides
JPS5116273A (en) 1974-07-31 1976-02-09 Hitachi Ltd DATSUSHOSOCHINIOKERU NH3 CHUNYURYONO SEIGYOHO
JPS5238939U (en) 1975-09-12 1977-03-18
US4526988A (en) * 1983-03-10 1985-07-02 Eli Lilly And Company Difluoro antivirals and intermediate therefor
NL8403224A (en) 1984-10-24 1986-05-16 Oce Andeno Bv DIOXAPHOSPHORINANS, THEIR PREPARATION AND THE USE FOR SPLITTING OF OPTICALLY ACTIVE COMPOUNDS.
US5223263A (en) 1988-07-07 1993-06-29 Vical, Inc. Liponucleotide-containing liposomes
GB8719367D0 (en) 1987-08-15 1987-09-23 Wellcome Found Therapeutic compounds
JPH03501253A (en) 1987-09-22 1991-03-22 ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア Liposome-based nucleoside analogs for the treatment of AIDS
US5705363A (en) 1989-03-02 1998-01-06 The Women's Research Institute Recombinant production of human interferon τ polypeptides and nucleic acids
US5411947A (en) * 1989-06-28 1995-05-02 Vestar, Inc. Method of converting a drug to an orally available form by covalently bonding a lipid to the drug
US5194654A (en) * 1989-11-22 1993-03-16 Vical, Inc. Lipid derivatives of phosphonoacids for liposomal incorporation and method of use
US5463092A (en) 1989-11-22 1995-10-31 Vestar, Inc. Lipid derivatives of phosphonacids for liposomal incorporation and method of use
US5026687A (en) * 1990-01-03 1991-06-25 The United States Of America As Represented By The Department Of Health And Human Services Treatment of human retroviral infections with 2',3'-dideoxyinosine alone and in combination with other antiviral compounds
CA2079912C (en) 1990-04-06 2000-07-11 Gregory Reyes Hepatitis c virus epitopes
WO1991016920A1 (en) 1990-05-07 1991-11-14 Vical, Inc. Lipid prodrugs of salicylate and nonsteroidal anti-inflammatory drugs
WO1991018914A1 (en) 1990-05-29 1991-12-12 Vical, Inc. Synthesis of glycerol di- and triphosphate derivatives
DE69115694T2 (en) 1990-06-13 1996-10-17 Arnold Newton Mass. Glazier PHOSPHORYLATED PRODRUGS
US5372808A (en) 1990-10-17 1994-12-13 Amgen Inc. Methods and compositions for the treatment of diseases with consensus interferon while reducing side effect
US5543390A (en) * 1990-11-01 1996-08-06 State Of Oregon, Acting By And Through The Oregon State Board Of Higher Education, Acting For And On Behalf Of The Oregon Health Sciences University Covalent microparticle-drug conjugates for biological targeting
US5543389A (en) 1990-11-01 1996-08-06 State Of Oregon, Acting By And Through The Oregon State Board Of Higher Education On Behalf Of The Oregon Health Sciences University, A Non Profit Organization Covalent polar lipid-peptide conjugates for use in salves
US5256641A (en) 1990-11-01 1993-10-26 State Of Oregon Covalent polar lipid-peptide conjugates for immunological targeting
US5149794A (en) * 1990-11-01 1992-09-22 State Of Oregon Covalent lipid-drug conjugates for drug targeting
US5595732A (en) 1991-03-25 1997-01-21 Hoffmann-La Roche Inc. Polyethylene-protein conjugates
US5157027A (en) 1991-05-13 1992-10-20 E. R. Squibb & Sons, Inc. Bisphosphonate squalene synthetase inhibitors and method
CA2112803A1 (en) 1991-07-12 1993-01-21 Karl Y. Hostetler Antiviral liponucleosides: treatment of hepatitis b
US5554728A (en) 1991-07-23 1996-09-10 Nexstar Pharmaceuticals, Inc. Lipid conjugates of therapeutic peptides and protease inhibitors
TW224053B (en) 1991-09-13 1994-05-21 Paul B Chretien
US5676942A (en) 1992-02-10 1997-10-14 Interferon Sciences, Inc. Composition containing human alpha interferon species proteins and method for use thereof
US5405598A (en) * 1992-02-24 1995-04-11 Schinazi; Raymond F. Sensitizing agents for use in boron neutron capture therapy
JP3102945B2 (en) 1992-02-27 2000-10-23 財団法人野田産業科学研究所 Hepatitis treatment
US5610054A (en) 1992-05-14 1997-03-11 Ribozyme Pharmaceuticals, Inc. Enzymatic RNA molecule targeted against Hepatitis C virus
US5426183A (en) 1992-06-22 1995-06-20 Eli Lilly And Company Catalytic stereoselective glycosylation process for preparing 2'-deoxy-2',2'-difluoronucleosides and 2'-deoxy-2'-fluoronucleosides
BR9302427A (en) 1992-06-22 1994-01-11 Lilly Co Eli SELECTIVE STEREO PROCESS FOR THE PREPARATION OF A RIBOTURANOSIL DERIVATIVE
US5256798A (en) 1992-06-22 1993-10-26 Eli Lilly And Company Process for preparing alpha-anomer enriched 2-deoxy-2,2-difluoro-D-ribofuranosyl sulfonates
US5301508A (en) 1992-08-14 1994-04-12 Rubbermaid Incorporated Thermoelectric portable container
CA2105112C (en) * 1992-09-01 2005-08-02 Thomas C. Britton A process for anomerizing nucleosides
GB9226729D0 (en) 1992-12-22 1993-02-17 Wellcome Found Therapeutic combination
CN1078478C (en) * 1993-02-24 2002-01-30 王瑞駪 Compositions and methods of application of reactive antiviral polymers
EP0746319A4 (en) 1993-05-12 1997-11-05 Karl Y Hostetler Acyclovir derivatives for topical use
EP0773029A4 (en) 1993-07-19 1997-09-03 Tokyo Tanabe Co Hepatitis c virus proliferation inhibitor
US7375198B2 (en) * 1993-10-26 2008-05-20 Affymetrix, Inc. Modified nucleic acid probes
US6156501A (en) 1993-10-26 2000-12-05 Affymetrix, Inc. Arrays of modified nucleic acid probes and methods of use
US5951974A (en) 1993-11-10 1999-09-14 Enzon, Inc. Interferon polymer conjugates
ATE214940T1 (en) 1993-11-10 2002-04-15 Enzon Inc IMPROVED INTERFERON-POLYMER CONJUGATES
WO1995024185A1 (en) 1994-03-11 1995-09-14 Isis Pharmaceuticals, Inc. Novel pyrimidine nucleosides
DE4447588C2 (en) 1994-05-03 1997-11-20 Omer Osama Dr Dr Med Treatment of herpes and hepatitis virus infections and bronchitis
AU710074B2 (en) * 1994-06-22 1999-09-16 Proligo Llc Novel method of preparation of known and novel 2'-modified nucleosides by intramolecular nucleophilic displacement
DE4432623A1 (en) 1994-09-14 1996-03-21 Huels Chemische Werke Ag Process for bleaching aqueous surfactant solutions
US5738846A (en) 1994-11-10 1998-04-14 Enzon, Inc. Interferon polymer conjugates and process for preparing the same
US5696277A (en) 1994-11-15 1997-12-09 Karl Y. Hostetler Antiviral prodrugs
US6391859B1 (en) * 1995-01-27 2002-05-21 Emory University [5-Carboxamido or 5-fluoro]-[2′,3′-unsaturated or 3′-modified]-pyrimidine nucleosides
US5703058A (en) * 1995-01-27 1997-12-30 Emory University Compositions containing 5-fluoro-2',3'-didehydro-2',3'-dideoxycytidine or a mono-, di-, or triphosphate thereof and a second antiviral agent
PT806956E (en) 1995-02-01 2003-01-31 Resprotect Gmbh USES OF 5-SUBSTITUTED NUCLEOSIDES FOR INHIBITION OF RESISTANCE FORMATION IN CYTOSTATIC TREATMENT
GB9505025D0 (en) * 1995-03-13 1995-05-03 Medical Res Council Chemical compounds
DE19514523A1 (en) 1995-04-12 1996-10-17 Schering Ag New cytosine and cytidine derivatives
US5908621A (en) 1995-11-02 1999-06-01 Schering Corporation Polyethylene glycol modified interferon therapy
US5767097A (en) * 1996-01-23 1998-06-16 Icn Pharmaceuticals, Inc. Specific modulation of Th1/Th2 cytokine expression by ribavirin in activated T-lymphocytes
GB9602028D0 (en) * 1996-02-01 1996-04-03 Amersham Int Plc Nucleoside analogues
US5980884A (en) 1996-02-05 1999-11-09 Amgen, Inc. Methods for retreatment of patients afflicted with Hepatitis C using consensus interferon
AU2064297A (en) 1996-02-29 1997-09-16 Immusol, Inc Hepatitis c virus ribozymes
US5830905A (en) 1996-03-29 1998-11-03 Viropharma Incorporated Compounds, compositions and methods for treatment of hepatitis C
US5633388A (en) 1996-03-29 1997-05-27 Viropharma Incorporated Compounds, compositions and methods for treatment of hepatitis C
US5990276A (en) 1996-05-10 1999-11-23 Schering Corporation Synthetic inhibitors of hepatitis C virus NS3 protease
GB9609932D0 (en) 1996-05-13 1996-07-17 Hoffmann La Roche Use of IL-12 and IFN alpha for the treatment of infectious diseases
US5891874A (en) 1996-06-05 1999-04-06 Eli Lilly And Company Anti-viral compound
US5837257A (en) 1996-07-09 1998-11-17 Sage R&D Use of plant extracts for treatment of HIV, HCV and HBV infections
US5922757A (en) 1996-09-30 1999-07-13 The Regents Of The University Of California Treatment and prevention of hepatic disorders
EP0961775B1 (en) * 1996-10-16 2004-07-14 ICN Pharmaceuticals, Inc. Purine l-nucleosides, analogs and uses thereof
US6509320B1 (en) 1996-10-16 2003-01-21 Icn Pharmaceuticals, Inc. Purine L-nucleosides, analogs and uses thereof
AU738170B2 (en) * 1996-10-16 2001-09-13 Icn Pharmaceuticals, Inc. Monocyclic L-nucleosides, analogs and uses thereof
US6455690B1 (en) * 1996-10-16 2002-09-24 Robert Tam L-8-oxo-7-propyl-7,8-dihydro-(9H)-guanosine
ES2169880T3 (en) 1996-10-18 2002-07-16 Vertex Pharma INHIBITORS OF SERINE PROTEASES, PARTICULARLY OF THE NS3 PROTEASE OF HEPATITIS VIRUS.
GB9623908D0 (en) 1996-11-18 1997-01-08 Hoffmann La Roche Amino acid derivatives
IL119833A (en) 1996-12-15 2001-01-11 Lavie David Hypericum perforatum extracts for the preparation of pharmaceutical compositions for the treatment of hepatitis
US6004933A (en) 1997-04-25 1999-12-21 Cortech Inc. Cysteine protease inhibitors
JP3963488B2 (en) 1997-06-30 2007-08-22 メルツ ファーマ ゲゼルシャフト ミット ベシュレンクテル ハフツンク ウント コンパニー コマンディゲゼルシャフト アウフ アクチェン 1-amino-alkylcyclohexane NMDA receptor antagonist
IL134233A0 (en) 1997-08-11 2001-04-30 Boehringer Ingelheim Ca Ltd Hepatitis c inhibitor peptide analogues
ATE206618T1 (en) 1997-09-21 2001-10-15 Schering Corp COMBINATION THERAPY FOR REMOVAL OF DETECTED HCV RNA IN PATIENTS WITH CHRONIC HEPATITIS C INFECTION
US6703374B1 (en) * 1997-10-30 2004-03-09 The United States Of America As Represented By The Department Of Health And Human Services Nucleosides for imaging and treatment applications
US5981709A (en) 1997-12-19 1999-11-09 Enzon, Inc. α-interferon-polymer-conjugates having enhanced biological activity and methods of preparing the same
US7462605B2 (en) 1998-01-23 2008-12-09 Celmed Oncology (Usa), Inc. Phosphoramidate compounds and methods of use
EP1167972B1 (en) 1998-01-23 2017-03-08 Kiadis Pharma Intellectual Property B.V. Enzyme catalyzed therapeutic agents
EP2390257A1 (en) * 1998-02-25 2011-11-30 Emory University 2'-fluoronucleosides
US6787305B1 (en) 1998-03-13 2004-09-07 Invitrogen Corporation Compositions and methods for enhanced synthesis of nucleic acid molecules
CA2326535A1 (en) 1998-03-27 1999-10-07 Regents Of The University Of Minnesota Nucleosides with antiviral and anticancer activity
GB9806815D0 (en) 1998-03-30 1998-05-27 Hoffmann La Roche Amino acid derivatives
DK1066247T3 (en) * 1998-03-31 2007-04-02 Vertex Pharma Inhibitors of serine proteases, especially hepatitis C virus NS3 protease
TWI277424B (en) 1998-05-15 2007-04-01 Schering Corp Combination therapy for eradicating detectable NCV-RNA in antiviral treatment naive patients having chronic hepatitis C infection
KR20010052622A (en) 1998-06-08 2001-06-25 프리돌린 클라우스너, 롤란드 비. 보레르 Use of peg-ifn-alpha and ribavirin for the treatment of chronic hepatitis c
US6323180B1 (en) 1998-08-10 2001-11-27 Boehringer Ingelheim (Canada) Ltd Hepatitis C inhibitor tri-peptides
KR100634342B1 (en) 1998-08-10 2006-10-16 이데닉스(케이만)리미티드 ?-L-2'-Deoxy-nucleosides for the treatment of hepatitis B
CA2354536A1 (en) 1998-12-18 2000-06-29 Schering Corporation Ribavirin-pegylated interferon alfa induction hcv combination therapy
AU775601B2 (en) 1999-07-22 2004-08-05 Celmed Oncology (Usa) Inc. Enzyme catalyzed therapeutic activation
KR20020091829A (en) 1999-07-30 2002-12-06 애보트 게엠베하 운트 콤파니 카게 2-Pyrazolin-5-ones
AU1262001A (en) 1999-11-04 2001-05-14 Biochem Pharma Inc. Method for the treatment or prevention of flaviviridae viral infection using nucleoside analogues
TR200601784T2 (en) * 1999-11-12 2007-01-22 Pharmasset Ltd. Synthesis of 2'-deoxy-L-nucleosides
US6495677B1 (en) 2000-02-15 2002-12-17 Kanda S. Ramasamy Nucleoside compounds
PL364995A1 (en) 2000-02-18 2004-12-27 Shire Biochem Inc. Method for the treatment or prevention of flavivirus
KR100974917B1 (en) 2000-04-13 2010-08-09 파마셋 인코포레이티드 3'- or 2'-hydroxymethyl substituted nucleoside derivatives for treatment of hepatitis virus infections
US6924270B2 (en) 2000-04-20 2005-08-02 Schering Corporation Ribavirin-interferon alfa combination therapy for eradicating detectable HCV-RNA in patients having chronic hepatitis C infection
MY164523A (en) * 2000-05-23 2017-12-29 Univ Degli Studi Cagliari Methods and compositions for treating hepatitis c virus
EA005890B1 (en) 2000-05-26 2005-06-30 Айденикс (Кайман) Лимитед Methods for treating hepatitis delta virus infection with beta-l-2'-deoxy-nucleosides
US6787526B1 (en) 2000-05-26 2004-09-07 Idenix Pharmaceuticals, Inc. Methods of treating hepatitis delta virus infection with β-L-2′-deoxy-nucleosides
CA2410579C (en) * 2000-05-26 2010-04-20 Jean-Pierre Sommadossi Methods and compositions for treating flaviviruses and pestiviruses
FR2810322B1 (en) * 2000-06-14 2006-11-10 Pasteur Institut COMBINATORY PRODUCTION OF NUCLEOTIDE AND NUCLEOTIDE ANALOGUES (XiTP)
MY141594A (en) 2000-06-15 2010-05-14 Novirio Pharmaceuticals Ltd 3'-PRODRUGS OF 2'-DEOXY-ß-L-NUCLEOSIDES
US6815542B2 (en) 2000-06-16 2004-11-09 Ribapharm, Inc. Nucleoside compounds and uses thereof
UA72612C2 (en) * 2000-07-06 2005-03-15 Pyrido[2.3-d]pyrimidine and pyrimido[4.5-d]pyrimidine nucleoside analogues, prodrugs and method for inhibiting growth of neoplastic cells
AR029851A1 (en) 2000-07-21 2003-07-16 Dendreon Corp NEW PEPTIDES AS INHIBITORS OF NS3-SERINA PROTEASA DEL VIRUS DE HEPATITIS C
WO2002008251A2 (en) 2000-07-21 2002-01-31 Corvas International, Inc. Peptides as ns3-serine protease inhibitors of hepatitis c virus
KR100749160B1 (en) 2000-07-21 2007-08-14 길리애드 사이언시즈, 인코포레이티드 Methods for making prodrugs of phosphonate nucleotide analogues
AR034127A1 (en) 2000-07-21 2004-02-04 Schering Corp IMIDAZOLIDINONES AS INHIBITORS OF NS3-SERINA PROTEASA OF THE HEPATITIS C VIRUS, PHARMACEUTICAL COMPOSITION, A METHOD FOR THEIR PREPARATION, AND THE USE OF THE SAME FOR THE MANUFACTURE OF A MEDICINAL PRODUCT
CZ2003195A3 (en) 2000-07-21 2003-04-16 Schering Corporation Peptide inhibitors of serine protease NS3 and pharmaceutical preparation containing thereof
US7018985B1 (en) 2000-08-21 2006-03-28 Inspire Pharmaceuticals, Inc. Composition and method for inhibiting platelet aggregation
US6897201B2 (en) * 2000-08-21 2005-05-24 Inspire Pharmaceuticals, Inc. Compositions and methods for the treatment of glaucoma or ocular hypertension
AR039558A1 (en) * 2000-08-21 2005-02-23 Inspire Pharmaceuticals Inc COMPOSITIONS AND METHOD FOR THE TREATMENT OF GLAUCOMA OR OCULAR HYPERTENSION
US20030008841A1 (en) 2000-08-30 2003-01-09 Rene Devos Anti-HCV nucleoside derivatives
AU2002213343A1 (en) 2000-10-18 2002-04-29 Schering Corporation Ribavirin-pegylated interferon alfa HCV combination therapy
PT1411954E (en) * 2000-10-18 2011-03-16 Pharmasset Inc Modified nucleosides for treatment of viral infections and abnormal cellular proliferation
US6555677B2 (en) 2000-10-31 2003-04-29 Merck & Co., Inc. Phase transfer catalyzed glycosidation of an indolocarbazole
AU2002248147B2 (en) 2000-11-20 2006-04-06 Bristol-Myers Squibb Company Hepatitis C tripeptide inhibitors
ES2324594T3 (en) 2000-12-12 2009-08-11 Schering Corporation DIARIL PEPTIDICS USED AS INHIBITORS OF THE SERINE PROTEASE NS3 OF THE HEPATITIS VIRUS C.
WO2002048116A2 (en) 2000-12-13 2002-06-20 Bristol-Myers Squibb Pharma Company Inhibitors of hepatitis c virus ns3 protease
WO2002048157A2 (en) 2000-12-13 2002-06-20 Bristol-Myers Squibb Pharma Company Imidazolidinones and their related derivatives as hepatitis c virus ns3 protease inhibitors
AU2002232660A1 (en) 2000-12-15 2002-06-24 Pharmasset Ltd. Antiviral agents for treatment of flaviviridae infections
US7105499B2 (en) * 2001-01-22 2006-09-12 Merck & Co., Inc. Nucleoside derivatives as inhibitors of RNA-dependent RNA viral polymerase
GB0112617D0 (en) 2001-05-23 2001-07-18 Hoffmann La Roche Antiviral nucleoside derivatives
US20050009775A1 (en) 2001-06-21 2005-01-13 Howes Peter David Nucleoside compounds in hcv
US6962991B2 (en) * 2001-09-12 2005-11-08 Epoch Biosciences, Inc. Process for the synthesis of pyrazolopyrimidines
US7227019B2 (en) 2001-09-13 2007-06-05 Bristol-Myers Squibb Company Process for the preparation of rebeccamycin and analogs thereof
WO2003024461A1 (en) 2001-09-20 2003-03-27 Schering Corporation Hcv combination therapy
US7138376B2 (en) * 2001-09-28 2006-11-21 Idenix Pharmaceuticals, Inc. Methods and compositions for treating hepatitis C virus using 4'-modified nucleosides
GB0129945D0 (en) 2001-12-13 2002-02-06 Mrc Technology Ltd Chemical compounds
EP1569652A4 (en) * 2001-12-14 2008-07-02 Pharmasset Inc N sp 4 /sp-acylcytosine nucleosides for treatment of viral iinfections
AU2002353165A1 (en) 2001-12-17 2003-06-30 Ribapharm Inc. Deazapurine nucleoside libraries and compounds
WO2003055896A2 (en) * 2001-12-21 2003-07-10 Micrologix Biotech Inc. Anti-viral 7-deaza l-nucleosides
WO2003062256A1 (en) 2002-01-17 2003-07-31 Ribapharm Inc. 2'-beta-modified-6-substituted adenosine analogs and their use as antiviral agents
JP2005527499A (en) * 2002-02-13 2005-09-15 メルク エンド カムパニー インコーポレーテッド Methods for inhibiting orthopoxvirus replication using nucleoside compounds
AU2003213628A1 (en) 2002-02-28 2003-09-16 Biota, Inc. Nucleoside 5'-monophosphate mimics and their prodrugs
US7285658B2 (en) * 2002-02-28 2007-10-23 Biota, Inc. Nucleotide mimics and their prodrugs
US20040014108A1 (en) * 2002-05-24 2004-01-22 Eldrup Anne B. Oligonucleotides having modified nucleoside units
WO2003106477A1 (en) 2002-06-01 2003-12-24 Isis Pharmaceuticals, Inc. Oligomeric compounds that include carbocyclic nucleosides and their use in gene modulation
AU2003242672B2 (en) 2002-06-07 2009-12-17 Universitair Medisch Centrum Utrecht New compounds for modulating the activity of exhange proteins directly activated by camp (EPACS)
PL374792A1 (en) 2002-06-28 2005-10-31 Idenix (Cayman) Limited 2' and 3'-nucleoside prodrugs for treating flaviviridae infections
US7608600B2 (en) * 2002-06-28 2009-10-27 Idenix Pharmaceuticals, Inc. Modified 2′ and 3′-nucleoside prodrugs for treating Flaviviridae infections
CN1761677A (en) * 2002-06-28 2006-04-19 埃迪尼克斯(开曼)有限公司 Modified 2' and 3' -nucleoside produgs for treating flaviridae infections
CN100348607C (en) 2002-06-28 2007-11-14 埃迪尼克斯(开曼)有限公司 For the treatment of Flaviviridae viral infection in 2 'and 3'-nucleoside prodrugs
JP2005533824A (en) 2002-06-28 2005-11-10 イデニクス(ケイマン)リミテツド 2'-C-methyl-3'-OL-valine ester ribofuranosyl cytidine for the treatment of Flaviviridae infections
CA2490666A1 (en) 2002-07-16 2004-01-22 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
EP1572709A3 (en) 2002-07-24 2005-11-23 PTC Therapeutics, Inc. Use of nucleoside compounds for nonsense suppression and the treatment of genetic diseases
WO2004011478A2 (en) 2002-07-25 2004-02-05 Micrologix Biotech Inc. Anti-viral 7-deaza d-nucleosides and uses thereof
JP4173861B2 (en) * 2002-09-13 2008-10-29 イデニクス(ケイマン)リミテツド Β-L-2'-deoxynucleoside and combination therapy for the treatment of resistant HBV strains
MXPA05005192A (en) 2002-11-15 2005-09-08 Idenix Cayman Ltd 2aCOE-BRANCHED NUCLEOSIDES AND FLAVIVIRIDAE.
TWI332507B (en) * 2002-11-19 2010-11-01 Hoffmann La Roche Antiviral nucleoside derivatives
PL377287A1 (en) * 2002-12-12 2006-01-23 Idenix (Cayman) Limited Process for the production of 2'-branched nucleosides
AU2003225705A1 (en) 2003-03-07 2004-09-30 Ribapharm Inc. Cytidine analogs and methods of use
WO2004084453A2 (en) 2003-03-20 2004-09-30 Microbiologica Quimica E Farmaceutica Ltd. METHODS OF MANUFACTURE OF 2'-DEOXY-β-L-NUCLEOSIDES
WO2005002626A2 (en) 2003-04-25 2005-01-13 Gilead Sciences, Inc. Therapeutic phosphonate compounds
US7407965B2 (en) 2003-04-25 2008-08-05 Gilead Sciences, Inc. Phosphonate analogs for treating metabolic diseases
WO2004096286A2 (en) 2003-04-25 2004-11-11 Gilead Sciences, Inc. Antiviral phosphonate analogs
US20050261237A1 (en) 2003-04-25 2005-11-24 Boojamra Constantine G Nucleoside phosphonate analogs
MXPA05011296A (en) 2003-04-25 2006-01-24 Gilead Sciences Inc Kinase inhibitor phosphonate conjugates.
US7452901B2 (en) * 2003-04-25 2008-11-18 Gilead Sciences, Inc. Anti-cancer phosphonate analogs
US7470724B2 (en) 2003-04-25 2008-12-30 Gilead Sciences, Inc. Phosphonate compounds having immuno-modulatory activity
AU2004233989A1 (en) 2003-04-25 2004-11-11 Gilead Sciences, Inc. Anti-cancer phosphonate analogs
US20040259934A1 (en) 2003-05-01 2004-12-23 Olsen David B. Inhibiting Coronaviridae viral replication and treating Coronaviridae viral infection with nucleoside compounds
EP1656093A2 (en) 2003-05-14 2006-05-17 Idenix (Cayman) Limited Nucleosides for treatment of infection by corona viruses, toga viruses and picorna viruses
US20040229839A1 (en) 2003-05-14 2004-11-18 Biocryst Pharmaceuticals, Inc. Substituted nucleosides, preparation thereof and use as inhibitors of RNA viral polymerases
WO2004106356A1 (en) 2003-05-27 2004-12-09 Syddansk Universitet Functionalized nucleotide derivatives
EP1644479A4 (en) 2003-06-16 2008-04-23 Mark W Grinstaff Functional synthetic molecules and macromolecules for gene delivery
RU2243972C1 (en) 2003-06-26 2005-01-10 Государственный научный центр вирусологии и биотехнологии "Вектор" Nucleoside analog phosphoramidates as inhibitors of human immunodeficiency virus reproduction
EP1639121A4 (en) 2003-06-30 2008-04-16 Idenix Cayman Ltd Synthesis of beta -l-2-deoxy nucleosides
WO2005009418A2 (en) 2003-07-25 2005-02-03 Idenix (Cayman) Limited Purine nucleoside analogues for treating diseases caused by flaviviridae including hepatitis c
US20050148534A1 (en) * 2003-09-22 2005-07-07 Castellino Angelo J. Small molecule compositions and methods for increasing drug efficiency using compositions thereof
US7348389B2 (en) 2003-09-22 2008-03-25 E. I. Du Pont De Nemours And Company Method for achieving recoat adhesion over a fluorinated topcoat
JP2007509939A (en) * 2003-10-27 2007-04-19 ジェネラブズ テクノロジーズ インコーポレーティッド Nucleoside compounds for treating viral infections
JP2007519734A (en) 2004-01-28 2007-07-19 メルク エンド カムパニー インコーポレーテッド Aminocyclopentylpyridopyrazinone chemokine receptor activity modulator
WO2005082144A1 (en) 2004-02-25 2005-09-09 Government Of The United States Of America, As Represented By The Secretary, Department Of Health And Human Services Office Of Technology Transfer Methylation inhibitor compounds
WO2005087788A2 (en) 2004-03-04 2005-09-22 The Regents Of The University Of California Methods for preparation of nucleoside phosphonate esters
BRPI0512360A (en) * 2004-06-23 2008-03-11 Idenix Cayman Ltd 5-aza-7-deazapurine derivatives for the treatment of flaviviridae
US7217523B2 (en) * 2004-07-02 2007-05-15 Regents Of The University Of Minnesota Nucleoside phosphoramidates and nucleoside phosphoramidases
NZ552927A (en) 2004-07-21 2010-05-28 Pharmasset Inc Preparation of alkyl-substituted 2-deoxy-2-fluoro-D-ribofuranosyl pyrimidines and purines and their derivatives
WO2006110157A2 (en) * 2004-07-27 2006-10-19 Gilead Sciences, Inc. Nucleoside phosphonate conjugates as anti hiv agents
WO2006029081A2 (en) 2004-09-02 2006-03-16 Neopharm, Inc. Nucleoside-lipid conjugates, their method of preparation and uses thereof
JP2008514639A (en) 2004-09-24 2008-05-08 イデニクス(ケイマン)リミテツド Methods and compositions for treating flavivirus, pestivirus and hepacivirus infections
EP1814561A4 (en) 2004-10-29 2012-12-19 Biocryst Pharm Inc Therapeutic furopyrimidines and thienopyrimidines
US20060116557A1 (en) 2004-11-30 2006-06-01 Alere Medical Incorporated Methods and systems for evaluating patient data
WO2006063149A1 (en) 2004-12-09 2006-06-15 Regents Of The University Of Minnesota Nucleosides with antiviral and anticancer activity
WO2006063717A2 (en) 2004-12-16 2006-06-22 Febit Biotech Gmbh Polymerase-independent analysis of the sequence of polynucleotides
EP1674104A1 (en) 2004-12-24 2006-06-28 Institut National De La Sante Et De La Recherche Medicale (Inserm) Uridine derivatives as antiviral drugs against a flaviviridae, especially HCV
US20060199738A1 (en) 2005-03-04 2006-09-07 Sumitomo Chemical Company, Limited Herbicidal composition
WO2006121820A1 (en) 2005-05-05 2006-11-16 Valeant Research & Development Phosphoramidate prodrugs for treatment of viral infection
WO2007027248A2 (en) 2005-05-16 2007-03-08 Valeant Research & Development 3', 5' - cyclic nucleoside analogues for treatment of hcv
JP2009504704A (en) * 2005-08-15 2009-02-05 エフ.ホフマン−ラ ロシュ アーゲー Antiviral 4'-substituted pronucleotide phosphoramidate
US8895531B2 (en) 2006-03-23 2014-11-25 Rfs Pharma Llc 2′-fluoronucleoside phosphonates as antiviral agents
PT2084174E (en) 2006-10-10 2013-10-08 Hoffmann La Roche Preparation of nucleosides ribofuranosyl pyrimidines
PL216525B1 (en) 2006-10-17 2014-04-30 Ct Badań Molekularnych I Makromolekularnych Polskiej Akademii Nauk 5'-0-[(N-acyl) amidophosphate] - and 5'-0- [(N-acyl) amidothiophosphate]- and 5'-0- [N-acyl) amidodithiophosphate] and 5'-0- [N-acyl) amidoselenophosphate] - nucleosides and method for their manufacture
GB0623493D0 (en) 2006-11-24 2007-01-03 Univ Cardiff Chemical compounds
CA2672613A1 (en) 2006-12-20 2008-07-03 Istituto Di Ricerche Di Biologia Molecolare P. Angeletti S.P.A. Nucleoside cyclic phosphoramidates for the treatment of rna-dependent rna viral infection
US20080261913A1 (en) 2006-12-28 2008-10-23 Idenix Pharmaceuticals, Inc. Compounds and pharmaceutical compositions for the treatment of liver disorders
EP2124555B1 (en) 2007-01-05 2015-07-08 Merck Sharp & Dohme Corp. Nucleoside aryl phosphoramidates for the treatment of rna-dependent rna viral infection
EP2144921A2 (en) 2007-02-27 2010-01-20 K.U. Leuven Research and Development Phosphate modified nucleosides useful as substrates for polymerases and as antiviral agents
US7964580B2 (en) 2007-03-30 2011-06-21 Pharmasset, Inc. Nucleoside phosphoramidate prodrugs
GB0709791D0 (en) 2007-05-22 2007-06-27 Angeletti P Ist Richerche Bio Antiviral agents
CN101108870A (en) 2007-08-03 2008-01-23 冷一欣 Process for preparation of nucleoside phosphoric acid ester compound and application thereof
JO2778B1 (en) 2007-10-16 2014-03-15 ايساي انك Certain Compounds, Compositions and Methods
JP5238939B2 (en) 2007-11-07 2013-07-17 三菱化学株式会社 Long fiber reinforced composite resin composition and molded product
WO2009086192A1 (en) 2007-12-21 2009-07-09 Alios Biopharma, Inc. Biodegradable phosphate protected nucleotide derivatives and their use as cancer, anti viral and anti parasitic agents
US8227431B2 (en) 2008-03-17 2012-07-24 Hetero Drugs Limited Nucleoside derivatives
US20110130440A1 (en) 2008-03-26 2011-06-02 Alnylam Pharmaceuticals, Inc. Non-natural ribonucleotides, and methods of use thereof
CA2722308C (en) 2008-04-15 2024-02-27 Rfs Pharma, Llc. Nucleoside derivatives for treatment of caliciviridae infections, including norovirus infections
US8173621B2 (en) 2008-06-11 2012-05-08 Gilead Pharmasset Llc Nucleoside cyclicphosphates
WO2010009121A2 (en) 2008-07-15 2010-01-21 University Of Florida Research Foundation, Inc. Colon stem cells associated with colitis and colorectal cancer and methods of use
EP2346329B1 (en) 2008-10-09 2013-08-21 Anadys Pharmaceuticals, Inc. A method of inhibiting hepatitis c virus by combination of a 5,6-dihydro-1h-pyridin-2-one and one or more additional antiviral compounds
EP2376515A1 (en) 2008-12-23 2011-10-19 Pharmasset, Inc. Synthesis of purine nucleosides
SG172361A1 (en) 2008-12-23 2011-07-28 Pharmasset Inc Nucleoside analogs
AR074897A1 (en) 2008-12-23 2011-02-23 Pharmasset Inc NUCLEOSID PHOSPHORAMIDATES
JP2012514606A (en) 2009-01-07 2012-06-28 サイネクシス,インコーポレーテッド Formulation of cyclosporine derivatives and nucleosides for the treatment of HCV
TWI576352B (en) 2009-05-20 2017-04-01 基利法瑪席特有限責任公司 Nucleoside phosphoramidates
US8618076B2 (en) 2009-05-20 2013-12-31 Gilead Pharmasset Llc Nucleoside phosphoramidates
PT3290428T (en) 2010-03-31 2021-12-27 Gilead Pharmasset Llc Tablet comprising crystalline (s)-isopropyl 2-(((s)-(((2r,3r,4r,5r)-5-(2,4-dioxo-3,4-dihydropyrimidin-1 (2h)-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2-yl)methoxy)(phenoxy)phosphoryl)amino)propanoate
EA025311B1 (en) 2010-07-19 2016-12-30 Гайлид Сайэнсиз, Инк. Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
US20120107278A1 (en) 2010-10-29 2012-05-03 Pharmasset, Inc. Abbreviated hcv therapy for hcv infected patients with il28b c/c genotype
US20130109647A1 (en) 2011-10-31 2013-05-02 Gilead Pharmasset Llc Methods and compositions for treating hepatitis c virus
US8889159B2 (en) 2011-11-29 2014-11-18 Gilead Pharmasset Llc Compositions and methods for treating hepatitis C virus

Patent Citations (82)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US2759300A (en) 1954-08-11 1956-08-21 Pest Control Ltd Method and means for introducing a predetermined amount of a poisonous material beneath the surface of the soil
US5192549A (en) 1988-09-28 1993-03-09 Yissum Research Development Company Of The Hebrew University Of Jerusalem Method of amphiphatic drug loading in liposomes by pH gradient
US6132763A (en) 1988-10-20 2000-10-17 Polymasc Pharmaceuticals Plc Liposomes
US6060080A (en) 1990-07-16 2000-05-09 Daiichi Pharmaceutical Co., Ltd. Liposomal products
US5376380A (en) 1990-08-21 1994-12-27 Daiichi Pharmaceutical Co., Ltd. Method of producing liposomal products from freeze or spray-dried preparations of liposomes
US6180134B1 (en) 1993-03-23 2001-01-30 Sequus Pharmaceuticals, Inc. Enhanced ciruclation effector composition and method
WO1997012033A1 (en) 1995-09-27 1997-04-03 Emory University Recombinant hepatitis c virus rna replicase
WO2000006529A1 (en) 1998-07-27 2000-02-10 Istituto Di Ricerche Di Biologia Molecolare P Angeletti S.P.A. Diketoacid-derivatives as inhibitors of polymerases
WO2002057287A2 (en) 2001-01-22 2002-07-25 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2002057425A2 (en) 2001-01-22 2002-07-25 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
US6784166B2 (en) 2001-06-12 2004-08-31 Syntex (U.S.A.) Llc 4′-substituted nucleoside derivatives as inhibitors of HCV RNA replication.
WO2003006490A1 (en) 2001-07-11 2003-01-23 Vertex Pharmaceuticals Incorporated Bridged bicyclic serine protease inhibitors
WO2003010141A2 (en) 2001-07-25 2003-02-06 Boehringer Ingelheim (Canada) Ltd. Hepatitis c virus polymerase inhibitors with a heterobicyclic structure
US20060293306A1 (en) 2001-07-25 2006-12-28 Beaulieu Pierre L Viral Polymerase Inhibitors
WO2003037895A1 (en) 2001-11-02 2003-05-08 Glaxo Group Limited 4-(6-membered)-heteroaryl acyl pyrrolidine derivatives as hcv inhibitors
WO2003064456A1 (en) 2002-02-01 2003-08-07 Boehringer Ingelheim International Gmbh Tripeptides having a hydroxyproline ether of a substituted quinoline for the inhibition of ns3 (hepatitis c)
US20030187018A1 (en) 2002-02-01 2003-10-02 Boehringer Ingelheim International Gmbh Hepatitis C inhibitor tri-peptides
WO2003101993A1 (en) 2002-06-04 2003-12-11 Neogenesis Pharmaceuticals, Inc. Pyrazolo` 1,5a! pyrimidine compounds as antiviral agents
WO2003105770A2 (en) 2002-06-17 2003-12-24 Merck & Co., Inc. Carbocyclic nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2004000858A2 (en) 2002-06-21 2003-12-31 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2004003138A2 (en) 2002-06-27 2004-01-08 Merck & Co., Inc. Nucleoside derivatives as inhibitors of rna-dependent rna viral polymerase
WO2004002977A1 (en) 2002-07-01 2004-01-08 Pharmacia & Upjohn Company Llc Inhibitors of hcv ns5b polymerase
WO2004002944A1 (en) 2002-07-01 2004-01-08 Pharmacia & Upjohn Company Inhibitors of hcv ns5b polymerase
US20050098125A1 (en) 2002-07-01 2005-05-12 Thomas Hathaway Valve lash adjustment apparatus and method
WO2004002940A1 (en) 2002-07-01 2004-01-08 Pharmacia & Upjohn Company Inhibitors of hcv ns5b polymerase
WO2004009020A2 (en) 2002-07-24 2004-01-29 Merck & Co., Inc. Pyrrolopyrimidine thionucleoside analogs as antivirals
WO2004014852A2 (en) 2002-08-12 2004-02-19 Bristol-Myers Squibb Company Iminothiazolidinones as inhibitors of hcv replication
WO2004014313A2 (en) 2002-08-12 2004-02-19 Bristol-Myers Squibb Company Combination pharmaceutical agents as inhibitors of hcv replication
WO2004035571A1 (en) 2002-10-15 2004-04-29 Rigel Pharmaceuticals, Inc. Substituted indoles and their use as hcv inhibitors
US20040229840A1 (en) 2002-10-29 2004-11-18 Balkrishen Bhat Nucleoside derivatives as inhibitors of RNA-dependent RNA viral polymerase
WO2004041201A2 (en) 2002-11-01 2004-05-21 Viropharma Incorporated Benzofuran compounds, compositions and methods for treatment and prophylaxis of hepatitis c viral infections and associated diseases
WO2004065367A1 (en) 2003-01-22 2004-08-05 Boehringer Ingelheim International Gmbh Viral polymerase inhibitors
WO2004094452A2 (en) 2003-04-16 2004-11-04 Bristol-Myers Squibb Company Macrocyclic isoquinoline peptide inhibitors of hepatitis c virus
WO2004096210A1 (en) 2003-05-01 2004-11-11 Glaxo Group Limited Acylated indoline and tetrahydroquinoline derivatives as hcv inhibitors
WO2005003147A2 (en) 2003-05-30 2005-01-13 Pharmasset, Inc. Modified fluorinated nucleoside analogues
US20050009737A1 (en) 2003-05-30 2005-01-13 Jeremy Clark Modified fluorinated nucleoside analogues
US20060142238A1 (en) 2003-07-21 2006-06-29 Mcguigan Christopher Chemical compounds
WO2005021568A2 (en) 2003-08-27 2005-03-10 Biota, Inc. Novel tricyclic nucleosides or nucleotides as therapeutic agents
WO2005028502A1 (en) 2003-09-18 2005-03-31 Vertex Pharmaceuticals, Incorporated Inhibitors of serine proteases, particularly hcv ns3-ns4a protease
WO2005037214A2 (en) 2003-10-14 2005-04-28 Intermune, Inc. Macrocyclic carboxylic acids and acylsulfonamides as inhibitors of hcv replication
US20050267018A1 (en) 2003-10-14 2005-12-01 Blatt Lawrence M Macrocyclic compounds as inhibitors of viral replication
US20050154056A1 (en) 2003-11-07 2005-07-14 Pharmacia & Upjohn Company Inhibitors of HCV NS5B polymerase
WO2005067900A2 (en) 2004-01-06 2005-07-28 Achillion Pharmaceuticals, Inc. Azabenzofuran substituted thioureas as inhibitors of viral replication
WO2005095403A2 (en) 2004-03-30 2005-10-13 Intermune, Inc. Macrocyclic compounds as inhibitors of viral replication
WO2005103045A1 (en) 2004-04-22 2005-11-03 Glaxo Group Limited Acyl dihydro pyrrole derivatives as hcv inhibitors
WO2005123087A2 (en) 2004-06-15 2005-12-29 Merck & Co., Inc. C-purine nucleoside analogs as inhibitors of rna-dependent rna viral polymerase
WO2006012078A2 (en) 2004-06-24 2006-02-02 Merck & Co., Inc. Nucleoside aryl phosphoramidates for the treatment of rna-dependent rna viral infection
US20060199783A1 (en) 2004-07-21 2006-09-07 Pharmassett, Inc. Preparation of alkyl-substituted 2-deoxy-2-fluoro-D-ribofuranosyl pyrimidines and purines and their derivatives
US20060166964A1 (en) 2004-08-09 2006-07-27 Hudyma Thomas W Inhibitors of HCV replication
WO2006020082A1 (en) 2004-08-09 2006-02-23 Bristol-Myers Squibb Company Inhibitors of hcv replication
US20060040890A1 (en) 2004-08-23 2006-02-23 Roche Palo Alto Llc Anti-viral nucleosides
US20060040927A1 (en) 2004-08-23 2006-02-23 Roche Palo Alto Llc Heterocyclic antiviral compounds
US20060122146A1 (en) 2004-09-14 2006-06-08 Byoung-Kwon Chun Preparation of 2'-fluoro-2'-alkyl-substituted or other optionally substituted ribofuranosyl pyrimidines and purines and their derivatives
WO2006035061A1 (en) 2004-09-30 2006-04-06 Tibotec Pharmaceuticals Ltd. Hcv inhibiting bi-cyclic pyrimidines
WO2006065335A2 (en) 2004-10-21 2006-06-22 Merck & Co., Inc. Fluorinated pyrrolo[2,3-d]pyrimidine nucleosides for the treatment of rna-dependent rna viral infection
WO2006065590A2 (en) 2004-12-16 2006-06-22 Xtl Biopharmaceuticals Inc. Pyridine and pyrimidine antiviral compositions
WO2006093801A1 (en) 2005-02-25 2006-09-08 Abbott Laboratories Thiadiazine derivatives useful as anti-infective agents
US20060194749A1 (en) 2005-02-28 2006-08-31 Genelabs Technologies, Inc. Tricyclic-nucleoside prodrugs for treating viral infections
WO2006100310A1 (en) 2005-03-25 2006-09-28 Tibotec Pharmaceuticals Ltd Heterobicylic inhibitors of hcv
US20060241064A1 (en) 2005-04-25 2006-10-26 Genelabs Technologies, Inc. Nucleoside compounds for treating viral infections
WO2006120251A1 (en) 2005-05-12 2006-11-16 Tibotec Pharmaceuticals Ltd. Pteridines useful as hcv inhibitors and methods for the preparation thereof
WO2006120252A2 (en) 2005-05-12 2006-11-16 Tibotec Pharmaceuticals Ltd. Pyrido[2,3-d]pyrimidines useful as hcv inhibitors, and methods for the preparation thereof
US20060276511A1 (en) 2005-06-06 2006-12-07 Michael Serrano-Wu Inhibitors of HCV replication
WO2007002602A2 (en) 2005-06-27 2007-01-04 Depuy Spine, Inc. Intervertebral disc prosthesis and associated methods
WO2007015824A2 (en) 2005-07-25 2007-02-08 Intermune, Inc. Novel macrocyclic inhibitors of hepatitis c virus replication
WO2007014921A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007014920A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007014926A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007014925A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocylic inhibitors of hepatitis c virus
WO2007014922A1 (en) 2005-07-29 2007-02-08 Tibotec Pharmaceuticals Ltd. Macrocyclic inhibitors of hepatitis c virus
WO2007039145A1 (en) 2005-09-23 2007-04-12 Glaxo Group Limited C (2) -heteroarylmethyl-c (4) -pyrazinyl-2-yl acyl pyrrolidine compounds and their use for treating viral infections, especially hepatitis c virus
WO2007039142A1 (en) 2005-09-23 2007-04-12 Glaxo Group Limited C (2) -heteroarylmethyl-c (4) -methoxymethyl acyl pyrrolidine compounds and their use for treating viral infections, especially hepatitis c virus
US20070197463A1 (en) 2005-12-09 2007-08-23 Pharmasset, Inc. Antiviral nucleosides
WO2007070556A2 (en) 2005-12-12 2007-06-21 Genelabs Technologies, Inc. N-(6-membered aromatic ring)-amido anti-viral compounds
WO2007076034A2 (en) 2005-12-21 2007-07-05 Abbott Laboratories Anti-viral compounds
WO2007088148A1 (en) 2006-02-01 2007-08-09 Smithkline Beecham Corporation Derivatives of thiophene carboxilic acid as antiviral agent
WO2007092000A1 (en) 2006-02-06 2007-08-16 Bristol-Myers Squibb Company Inhibitors of hcv replication
WO2007095269A2 (en) 2006-02-14 2007-08-23 Merck & Co., Inc. Nucleoside aryl phosphoramidates for the treatment of rna-dependent rna viral infection
WO2007093901A1 (en) 2006-02-17 2007-08-23 Pfizer Limited 3 -deazapurine derivatives as tlr7 modulators
US20070275947A1 (en) 2006-05-25 2007-11-29 Bristol-Myers Squibb Company Cyclopropyl Fused Indolobenzazepine HCV NS5B Inhibitors
WO2008010921A2 (en) 2006-07-07 2008-01-24 Gilead Sciences, Inc. Modulators of pharmacokinetic properties of therapeutics
EP1881001A1 (en) 2006-07-20 2008-01-23 Tibotec Pharmaceuticals Ltd. HCV NS-3 serine protease inhibitors

Non-Patent Citations (52)

* Cited by examiner, † Cited by third party
Title
BALZARINI, J. ET AL., PROC. NATIONAL ACAD SCI USA, vol. 93, 1996, pages 7295 - 7299
BARTENSCHLAGER ET AL., J. VIROL., vol. 67, 1993, pages 3835 - 3844
BARTENSCHLAGER ET AL., J. VIROL., vol. 68, 1994, pages 5045 - 5055
BAZAN; FLETTERICK, VIROLOGY, vol. 171, 1989, pages 637 - 639
BEAULIEU, P. L. ET AL., CURRENT OPINION IN INVESTIGATIONAL DRUGS, vol. 5, 2004, pages 838 - 850
BEHRENS ET AL., EMBO, vol. 15, 1996, pages 12 - 22
C. MCGUIGAN ET AL., ANTIVIRAL RES., vol. 17, 1992, pages 311 - 321
CALISHER ET AL., J. GEN. VIROL, vol. 70, 1993, pages 37 - 43
CARROL, S. ET AL., INFECTIOUS DISORDERS-DRUG TARGETS, vol. 6, 2006, pages 17 - 29
CLARK, J. ET AL., J. MED. CHEM., vol. 48, 2005, pages 5504 - 5508
CLARK, J. MED. CHEM., vol. 48, 2005, pages 5504 - 5508
D. CURLEY ET AL., ANTIVIRAL RES., vol. 14, 1990, pages 345 - 356
E. W. MARTIN,: "Remington: The Science and Practice of Pharmacy, 19th edition,", 1995, MACK PUBLISHING COMPANY
ECKART ET AL., BIOCHEM. BIOPHYS. RES. COMM., vol. 192, 1993, pages 399 - 406
EISENBERG, E. J. ET AL., NUCLEOSIDES, NUCLEOTIDES AND NUCLEIC ACIDS, vol. 20, 2001, pages 1091 - 1098
FAILLA ET AL., J. VIROL., vol. 68, 1994, pages 3753 - 3760
FIELDS, B. N., KNIPE, D. M., AND HOWLEY, P. M.,: "Fields Virology", 1996, LIPPINCOTT-RAVEN PUBLISHERS, pages: 931 - 959
GORBALENYA ET AL., NATURE, vol. 333, 1988, pages 22
GORBALENYA ET AL., NUCLEIC ACID RES., vol. 17, 1989, pages 3889 - 3897
GRAKOUI ET AL., J. VIROL., vol. 67, 1993, pages 2832 - 2843
GRAKOUI ET AL., PROC. NATL. ACAD SCI. USA, vol. 90, 1993, pages 10583 - 10587
GRIFFITH, R.C. ET AL., ANNUAL REPORTS IN MEDICINAL CHEMISTRY, vol. 39, 2004, pages 223 - 237
HALSTEAD, S. B., REV. INFECT. DIS., vol. 6, 1984, pages 251 - 264
HALSTEAD, S. B., SCIENCE, vol. 239, 1988, pages 476 - 481
HIJIKATA ET AL., J. VIROL., vol. 67, 1993, pages 4665 - 4675
JIN; PETERSON, ARCH. BIOCHEM. BIOPHYS., vol. 323, 1995, pages 47 - 53
K. ISHI ET AL., HEPTOLOGY, vol. 29, 1999, pages 1227 - 1235
KIM ET AL., BIOCHEM. BIOPHYS. RES. COMM., vol. 215, 1995, pages 160 - 166
KOONIN, E.V.; DOLJA, V.V., CRIR. REV. BIOCHEM. MOLEC. BIOL., vol. 28, 1993, pages 375 - 430
LECHMANN ET AL., J. VIROL., vol. 71, 1997, pages 8416 - 8428
LEE, W.A. ET AL., ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, vol. 49, 2005, pages 1898
MARCH: "Advanced Organic Chemistry"
MCGUIGAN ET AL., ANTIVIRAL CHEM. CHEMOTHER, vol. 19901, no. 2, pages 107 - 113
MCGUIGAN, C. ET AL., J. MED. CHEM., vol. 39, 1996, pages 1748 - 1753
MEYERS, G.; THIEL, H.J., ADVANCES IN VIRUS RESEARCH, vol. 47, 1996, pages 53 - 118
MOENNIG V. ET AL., ADV. VIR. RES., vol. 41, 1992, pages 53 - 98
MOENNIG, V. ET AL., ADV. VIR. RES., vol. 41, 1992, pages 53 - 98
MONATH, T. P., NEW ENG. J. MED, vol. 319, no. 64, 1988, pages 1 - 643
NI, Z-J. ET AL., CURRENT OPINION IN DRUG DISCOVERY AND DEVELOPMENT, vol. 7, 2004, pages 446 - 459
SIDDIQUI, A. Q. ET AL., J. MED. CHEM., vol. 42, 1999, pages 4122 - 4128
T.W. GREENE; P.G. M. WUTS: "Protective Groups in Organic Synthesis" 3rd ed.,", 1999, JOHN WILEY & SONS
TAN, S.-L. ET AL., NATURE REV. DRUG DISCOV., vol. 1, 2002, pages 867 - 881
TOME ET AL., J. VIROL., vol. 67, 1993, pages 4017 - 4026
V. LOHMANN ET AL., VIROLOGY, vol. 249, 1998, pages 108 - 118
VALETTE, G. ET AL., J. MED. CHEM., vol. 39, 1996, pages 1981 - 1990
WALKER, M.P. ET AL., EXP. OPIN. INVESTIGATIONAL DRUGS, vol. 12, 2003, pages 1269 - 1280
WARRENER; COLLETT, J. VIROL., vol. 69, 1995, pages 1720 - 1726
WISKERCHEN; COLLETT, VIROLOGY, vol. 184, 1991, pages 341 - 350
WU, J. ET AL., CURRENT DRUG TARGETS-INFECTIOUS DISORDERS, vol. 3, 2003, pages 207 - 219
XU ET AL., J. VIROL., vol. 71, no. 53, 1997, pages 12 - 5322
YUAN ET AL., BIOCHEM. BIOPHYS. RES. COMM., vol. 232, 1997, pages 231 - 235
ZHONG ET AL., J. VIROL., vol. 72, 1998, pages 9365 - 9369

Cited By (314)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9585906B2 (en) 2007-03-30 2017-03-07 Gilead Pharmasset Llc Nucleoside phosphoramidate prodrugs
US12121529B2 (en) 2007-03-30 2024-10-22 Gilead Sciences, Inc. Nucleoside phosphoramidate prodrugs
US10183037B2 (en) 2007-03-30 2019-01-22 Gilead Pharmasset Llc Nucleoside phosphoramidate prodrugs
US11642361B2 (en) 2007-03-30 2023-05-09 Gilead Sciences, Inc. Nucleoside phosphoramidate prodrugs
US9085573B2 (en) 2007-03-30 2015-07-21 Gilead Pharmasset Llc Nucleoside phosphoramidate prodrugs
US9676808B2 (en) 2007-11-20 2017-06-13 Gilead Pharmasset Llc 2′,4′-substituted nucleosides as antiviral agents
US9296777B2 (en) 2007-11-20 2016-03-29 Gilead Pharmasset Llc 2′,4′-substituted nucleosides as antiviral agents
US8853171B2 (en) 2008-04-23 2014-10-07 Gilead Sciences, Inc. 1′-substituted carba-nucleoside analogs for antiviral treatment
USRE46762E1 (en) 2008-04-23 2018-03-27 Gilead Sciences, Inc 1′-substituted carba-nucleoside analogs for antiviral treatment
US8815829B2 (en) 2008-12-09 2014-08-26 Rfs Pharma, Llc 3′-azido purine nucleotide prodrugs for treatment of viral infections
CN102695513A (en) * 2008-12-23 2012-09-26 吉利德制药有限责任公司 Nucleoside phosphoramidates
US8957045B2 (en) 2008-12-23 2015-02-17 Gilead Pharmasset Llc Nucleoside phosphoramidates
JP2012513479A (en) * 2008-12-23 2012-06-14 ギリアド ファーマセット エルエルシー Synthesis of purine nucleosides
WO2010075517A3 (en) * 2008-12-23 2012-06-21 Pharmasset, Inc. Nucleoside phosphoramidate prodrugs
JP2012515714A (en) * 2008-12-23 2012-07-12 ギリアド ファーマセット エルエルシー Nucleoside phosphoramidate
JP2012516287A (en) * 2008-12-23 2012-07-19 ギリアド ファーマセット エルエルシー Nucleoside analogues
WO2010075549A3 (en) * 2008-12-23 2012-08-09 Pharmasset, Inc. Nucleoside phosphoramidates
WO2010075517A2 (en) 2008-12-23 2010-07-01 Pharmasset, Inc. Nucleoside analogs
EP3222628A1 (en) 2008-12-23 2017-09-27 Gilead Pharmasset LLC Nucleoside phosphoramidates
EP2671888A1 (en) 2008-12-23 2013-12-11 Gilead Pharmasset LLC 3',5'-cyclic nucleoside phosphate analogues
US9045520B2 (en) 2008-12-23 2015-06-02 Gilead Pharmasset Llc Synthesis of purine nucleosides
WO2010075554A1 (en) 2008-12-23 2010-07-01 Pharmasset, Inc. Synthesis of purine nucleosides
WO2010075549A2 (en) 2008-12-23 2010-07-01 Pharmasset, Inc. Nucleoside phosphoramidates
US8551973B2 (en) 2008-12-23 2013-10-08 Gilead Pharmasset Llc Nucleoside analogs
AU2009329917B2 (en) * 2008-12-23 2016-03-31 Gilead Pharmasset Llc Nucleoside analogs
JP2015221802A (en) * 2008-12-23 2015-12-10 ギリアド ファーマセット エルエルシー Nucleoside analogs
JP2015180628A (en) * 2008-12-23 2015-10-15 ギリアド ファーマセット エルエルシー synthesis of purine nucleoside
US8716262B2 (en) 2008-12-23 2014-05-06 Gilead Pharmasset Llc Nucleoside phosphoramidates
JP2013082728A (en) * 2008-12-23 2013-05-09 Gilead Pharmasset Llc Synthesis of purine nucleosides
EA019341B1 (en) * 2008-12-23 2014-02-28 Джилид Фармассет, Ллс. Nucleoside phosphoramidates
EA019295B1 (en) * 2008-12-23 2014-02-28 Джилид Фармассет, Ллс. Synthesis of purine nucleosides and process for preparing them
US9173893B2 (en) 2009-02-06 2015-11-03 Cocrystal Pharma, Inc. Purine nucleoside monophosphate prodrugs for treatment of cancer and viral infections
EP2393815A2 (en) * 2009-02-06 2011-12-14 RFS Pharma, LLC. Purine nucleoside monophosphate prodrugs for treatment of cancer and viral infections
EP2393815A4 (en) * 2009-02-06 2012-11-21 Rfs Pharma Llc Purine nucleoside monophosphate prodrugs for treatment of cancer and viral infections
US8609627B2 (en) 2009-02-06 2013-12-17 Rfs Pharma, Llc Purine nucleoside monophosphate prodrugs for treatment of cancer and viral infections
KR101774429B1 (en) * 2009-02-06 2017-09-04 코크리스탈 파마, 아이엔씨. Purine nucleoside monophosphate prodrugs for treatment of cancer and viral infections
US9206217B2 (en) 2009-05-20 2015-12-08 Gilead Pharmasset Llc Nucleoside phosphoramidates
US8735569B2 (en) 2009-05-20 2014-05-27 Gilead Pharmasset Llc Nucleoside phosphoramidates
KR101603817B1 (en) * 2009-05-20 2016-03-16 길리어드 파마셋 엘엘씨 N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
US9637512B2 (en) 2009-05-20 2017-05-02 Gilead Pharmasset Llc Nucleoside phosphoramidates
EP2913337A1 (en) 2009-05-20 2015-09-02 Gilead Pharmasset LLC N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
CN102459299B (en) * 2009-05-20 2015-09-30 吉利德制药有限责任公司 N-[(2 ' R)-2 '-deoxidation-2 '-fluoro-2 '-methyl-P-phenyl-5 '-uridine acyl group]-ALANINE 1-methylethyl ester and preparation method thereof
US8618076B2 (en) 2009-05-20 2013-12-31 Gilead Pharmasset Llc Nucleoside phosphoramidates
EP2610264A2 (en) 2009-05-20 2013-07-03 Gilead Pharmasset LLC N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
US8629263B2 (en) 2009-05-20 2014-01-14 Gilead Pharmasset Llc Nucleoside phosphoramidates
US8633309B2 (en) 2009-05-20 2014-01-21 Gilead Pharmasset Llc Nucleoside phosphoramidates
EP2610264A3 (en) * 2009-05-20 2014-01-22 Gilead Pharmasset LLC N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
CN102459299A (en) * 2009-05-20 2012-05-16 法莫赛特股份有限公司 N- [ (2 ' r) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -l-alanine 1-methylethyl ester and process for its production
CN105085592A (en) * 2009-05-20 2015-11-25 吉利德制药有限责任公司 N- [ (2 ' R) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -L-alanine 1-methylethyl ester and process for its production
EP3321275A1 (en) 2009-05-20 2018-05-16 Gilead Pharmasset LLC Crystalline form of sofosbuvir
CN105085592B (en) * 2009-05-20 2021-04-27 吉利德制药有限责任公司 N- [ (2' R) -2' -deoxy-2 ' -fluoro-2 ' -methyl-P-phenyl-5 ' -uridylyl ] -L-alanine 1-methylethyl ester and process for preparing same
US9284342B2 (en) 2009-05-20 2016-03-15 Gilead Pharmasset Llc Nucleoside phosphoramidates
CN105198949A (en) * 2009-05-20 2015-12-30 吉利德制药有限责任公司 Nucleoside Phosphoramidates
EP2910562A1 (en) 2009-05-20 2015-08-26 Gilead Pharmasset LLC N-[(2'r)-2'-deoxy-2 '-fluoro-2'-methyl-p-phenyl-5 '-uridylyl]-l-alanine 1-methylethyl ester in crystalline form
JP2016053045A (en) * 2009-05-20 2016-04-14 ギリアド ファーマセット エルエルシー N-[(2 'r)-2 '-deoxy-2 '-fluoro-2 '-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
EA028742B1 (en) * 2009-05-20 2017-12-29 Джилид Фармассет, Ллс Intermediate compounds useful for preparing nucleoside phosphoramidates
EA026731B1 (en) * 2009-05-20 2017-05-31 Джилид Фармассет Ллс N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
AU2016200676B2 (en) * 2009-05-20 2017-06-01 Gilead Sciences, Inc. N-[(2'R)-2 '-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl] -L-alanine 1-methylethyl ester and process for its production
JP2012527477A (en) * 2009-05-20 2012-11-08 ギリアド ファーマセット エルエルシー N-[(2'R) -2'-deoxy-2'-fluoro-2'-methyl-P-phenyl-5'-uridylyl] -L-alanine 1-methylethyl ester and process for its preparation
WO2010135569A1 (en) 2009-05-20 2010-11-25 Pharmasset, Inc. N- [ (2 ' r) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -l-alanine 1-methylethyl ester and process for its production
KR20140147144A (en) * 2009-05-20 2014-12-29 길리어드 파마셋 엘엘씨 N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
CN104292256A (en) * 2009-05-20 2015-01-21 吉利德制药有限责任公司 N- [ (2 ' R) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -L-alanine 1-methylethyl ester and process for its production
EA028709B1 (en) * 2009-05-20 2017-12-29 Джилид Фармассет, Ллс N-[(2'R)-2'-DEOXY-2'-FLUORO-2'-METHYL-p-PHENYL-5'-URIDYL]-L-ALANINE 1-METHYLETHYL ESTER AND PROCESS FOR PRODUCTION THEREOF
JP2015028060A (en) * 2009-05-20 2015-02-12 ギリアド ファーマセット エルエルシー N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
AU2014274548B2 (en) * 2009-05-20 2016-02-04 Gilead Sciences, Inc. N- [ (2 ' R) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -L-alanine 1-methylethyl ester and process for its production
AU2010249481B2 (en) * 2009-05-20 2015-01-22 Gilead Sciences, Inc. N- [ (2 ' R) -2 ' -deoxy-2 ' -fluoro-2 ' -methyl-p-phenyl-5 ' -uridylyl] -L-alanine 1-methylethyl ester and process for its production
KR101599183B1 (en) * 2009-05-20 2016-03-03 길리어드 파마셋 엘엘씨 N-[(2'r)-2'-deoxy-2'-fluoro-2'-methyl-p-phenyl-5'-uridylyl]-l-alanine 1-methylethyl ester and process for its production
WO2011005860A2 (en) 2009-07-07 2011-01-13 Alnylam Pharmaceuticals, Inc. 5' phosphate mimics
US10988498B2 (en) 2009-09-21 2021-04-27 Gilead Sciences, Inc. Processes and intermediates for the preparation of 1′-substituted carba-nucleoside analogs
US8822496B2 (en) 2009-10-30 2014-09-02 Boehringer Ingelheim International Gmbh Dosage regimens for HCV combination therapy
JP2013514276A (en) * 2009-12-18 2013-04-25 ベーリンガー インゲルハイム インターナショナル ゲゼルシャフト ミット ベシュレンクテル ハフツング HCV combination therapy
KR101715981B1 (en) 2010-03-31 2017-03-13 길리애드 파마셋 엘엘씨 Nucleoside phosphoramidates
CN102858790A (en) * 2010-03-31 2013-01-02 吉利德制药有限责任公司 Nucleoside Phosphoramidates
CN102906102A (en) * 2010-03-31 2013-01-30 吉利德制药有限责任公司 Stereoselective synthesis of phosphorus containing actives
JP2015205903A (en) * 2010-03-31 2015-11-19 ギリード・ファーマセット・エルエルシー nucleoside phosphoramidate
US8859756B2 (en) 2010-03-31 2014-10-14 Gilead Pharmasset Llc Stereoselective synthesis of phosphorus containing actives
JP2013523767A (en) * 2010-03-31 2013-06-17 ギリード・ファーマセット・エルエルシー Nucleoside phosphoramidate
JP2013525277A (en) * 2010-03-31 2013-06-20 ギリード・ファーマセット・エルエルシー Purine nucleoside phosphoramidate
WO2011123672A1 (en) 2010-03-31 2011-10-06 Pharmasset, Inc. Purine nucleoside phosphoramidate
EP2609923A2 (en) 2010-03-31 2013-07-03 Gilead Pharmasset LLC Nucleoside Phosphoramidates
KR101759369B1 (en) 2010-03-31 2017-07-18 길리애드 파마셋 엘엘씨 Stereoselective synthesis of phosphorus containing actives
TWI498117B (en) * 2010-03-31 2015-09-01 Gilead Pharmasset Llc Nucleoside phosphoramidates
WO2011123645A2 (en) 2010-03-31 2011-10-06 Pharmasset, Inc. Nucleoside phosphoramidates
CN104017020A (en) * 2010-03-31 2014-09-03 吉利德制药有限责任公司 Nucleoside phosphoramidates
AU2011235112B2 (en) * 2010-03-31 2015-07-09 Gilead Sciences, Inc. Nucleoside phosphoramidates
WO2011123645A3 (en) * 2010-03-31 2011-12-29 Pharmasset, Inc. Nucleoside phosphoramidates
EP2609923A3 (en) * 2010-03-31 2014-07-30 Gilead Pharmasset LLC Nucleoside Phosphoramidates
EA026341B1 (en) * 2010-03-31 2017-03-31 ГАЙЛИД ФАРМАССЕТ ЭлЭлСи Crystalline form of nucleoside phosphoramidate
WO2011123668A3 (en) * 2010-03-31 2012-05-24 Pharmasset, Inc. Stereoselective synthesis of phosphorus containing actives
EP3290428A1 (en) 2010-03-31 2018-03-07 Gilead Pharmasset LLC Tablet comprising crystalline (s)-isopropyl 2-(((s)-(((2r,3r,4r,5r)-5-(2,4-dioxo-3,4-dihydropyrimidin-1 (2h)-yl)-4-fluoro-3-hydroxy-4-methyltetrahydrofuran-2-yl)methoxy)(phenoxy)phosphoryl)amino)propanoate
CN104017020B (en) * 2010-03-31 2017-04-12 吉利德制药有限责任公司 Nucleoside phosphoramidates
KR20120138242A (en) * 2010-03-31 2012-12-24 길리어드 파마셋 엘엘씨 Nucleoside phosphoramidates
AP3515A (en) * 2010-03-31 2016-01-11 Gilead Pharmasset Llc Nucleoside phosphoramidates
KR20130130690A (en) * 2010-07-19 2013-12-02 길리애드 사이언시즈, 인코포레이티드 Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
KR20190077606A (en) * 2010-07-19 2019-07-03 길리애드 사이언시즈, 인코포레이티드 Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
EP2805960A1 (en) * 2010-07-19 2014-11-26 Gilead Sciences, Inc. Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
WO2012012465A1 (en) * 2010-07-19 2012-01-26 Clarke, Michael, O'neil Hanrahan Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
EA025311B1 (en) * 2010-07-19 2016-12-30 Гайлид Сайэнсиз, Инк. Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
CN103052646A (en) * 2010-07-19 2013-04-17 吉里德科学公司 Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
US9487544B2 (en) 2010-07-19 2016-11-08 Gilead Sciences, Inc. Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
US9090642B2 (en) 2010-07-19 2015-07-28 Gilead Sciences, Inc. Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
AU2011282241B2 (en) * 2010-07-19 2015-07-30 Gilead Sciences, Inc. Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
KR102108864B1 (en) 2010-07-19 2020-05-12 길리애드 사이언시즈, 인코포레이티드 Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
KR101995598B1 (en) * 2010-07-19 2019-07-02 길리애드 사이언시즈, 인코포레이티드 Methods for the preparation of diasteromerically pure phosphoramidate prodrugs
JP2013537527A (en) * 2010-07-19 2013-10-03 ギリード・サイエンシズ・インコーポレーテッド Process for the preparation of diastereomeric pure phosphoramidate prodrugs
US11492353B2 (en) 2010-07-22 2022-11-08 Gilead Sciences, Inc. Methods and compounds for treating Paramyxoviridae virus infections
US10696679B2 (en) 2010-07-22 2020-06-30 Gilead Sciences, Inc. Methods and compounds for treating paramyxoviridae virus infections
US10065958B2 (en) 2010-07-22 2018-09-04 Gilead Sciences, Inc. Methods and compounds for treating Paramyxoviridae virus infections
CN103209987A (en) * 2010-09-22 2013-07-17 艾丽奥斯生物制药有限公司 Substituted nucleotide analogs
JP2016065080A (en) * 2010-09-22 2016-04-28 アリオス バイオファーマ インク. Substituted nucleotide analog
JP2013537907A (en) * 2010-09-22 2013-10-07 アリオス バイオファーマ インク. Substituted nucleotide analogs
US9346848B2 (en) 2010-09-22 2016-05-24 Alios Biopharma, Inc. Azido nucleosides and nucleotide analogs
CN105061534A (en) * 2010-09-22 2015-11-18 艾丽奥斯生物制药有限公司 Substituted nucleotide analogs
US8877731B2 (en) 2010-09-22 2014-11-04 Alios Biopharma, Inc. Azido nucleosides and nucleotide analogs
CN103209987B (en) * 2010-09-22 2017-06-06 艾丽奥斯生物制药有限公司 Substituted nucleotide analog
US9278990B2 (en) 2010-09-22 2016-03-08 Alios Biopharma, Inc. Substituted nucleotide analogs
US8841275B2 (en) 2010-11-30 2014-09-23 Gilead Pharmasset Llc 2′-spiro-nucleosides and derivatives thereof useful for treating hepatitis C virus and dengue virus infections
US11925658B2 (en) 2011-03-01 2024-03-12 NuCana plc Phosphoramidate derivatives of 5-fluoro-2′—deoxyuridine for use in the treatment of cancer
US11559542B2 (en) 2011-03-01 2023-01-24 NuCana plc Phosphoramidate derivatives of 5-fluoro-2′-deoxyuridine for use in the treatment of cancer
US9221866B2 (en) 2011-03-01 2015-12-29 Nucana Biomed Limited Phosphoramidate derivatives of 5-fluoro-2′-deoxyuridine for use in the treatment of cancer
US8933053B2 (en) 2011-03-01 2015-01-13 Nucana Biomed Limited Phosphoramidate derivatives of 5-fluoro-2′-deoxyuridine for use in the treatment of cancer
US10022390B2 (en) 2011-03-01 2018-07-17 NuCana plc Phosphoramidate derivatives of 5-fluoro-2′-deoxyuridine for use in the treatment of cancer
US10993957B2 (en) 2011-03-01 2021-05-04 NuCana plc Phosphoramidate derivatives of 5-fluoro-2′-deoxyuridine for use in the treatment of cancer
US9655915B2 (en) 2011-03-01 2017-05-23 Nucana Biomed Limited Phosphoramidate derivatives of 5-fluoro-2′-deoxyuridine for use in the treatment of cancer
WO2012142523A2 (en) 2011-04-13 2012-10-18 Gilead Sciences, Inc. 1'-substituted pyrimidine n-nucleoside analogs for antiviral treatment
EP2697241B1 (en) * 2011-04-13 2019-06-12 Gilead Sciences, Inc. 1'-substituted pyrimidine n-nucleoside analogs for antiviral treatment
WO2012158811A3 (en) * 2011-05-19 2013-02-28 Rfs Pharma, Llc Purine monophosphate prodrugs for treatment of viral infections
WO2013039920A1 (en) * 2011-09-12 2013-03-21 Idenix Pharmaceuticals, Inc. Substituted carbonyloxymethylphosphoramidate compounds and pharmaceutical compositions for the treatment of viral infections
US10456414B2 (en) 2011-09-16 2019-10-29 Gilead Pharmasset Llc Methods for treating HCV
US9393256B2 (en) 2011-09-16 2016-07-19 Gilead Pharmasset Llc Methods for treating HCV
EP2583680A3 (en) * 2011-10-21 2013-06-12 Abbvie Inc. Mono (PSI-7977) or combination treatment of DAAs for use in treating HCV
PT107665A (en) * 2011-10-21 2014-07-16 Abbvie Inc METHODS FOR THE TREATMENT OF HCV COMPREHENDING AT LEAST TWO ANTIVIRAL AGENTS OF DIRECT ACTIVITY, RIBAVIRIN, BUT NOT INTERFERED
US9452194B2 (en) 2011-10-21 2016-09-27 Abbvie Inc. Methods for treating HCV
US8809265B2 (en) 2011-10-21 2014-08-19 Abbvie Inc. Methods for treating HCV
US8853176B2 (en) 2011-10-21 2014-10-07 Abbvie Inc. Methods for treating HCV
US9549941B2 (en) 2011-11-29 2017-01-24 Gilead Pharmasset Llc Compositions and methods for treating hepatitis C virus
US8889159B2 (en) 2011-11-29 2014-11-18 Gilead Pharmasset Llc Compositions and methods for treating hepatitis C virus
EP3750544A2 (en) 2011-11-30 2020-12-16 Emory University Jak inhibitors for use in the prevention or treatment of viral infection
KR101765997B1 (en) 2011-12-20 2017-08-07 리보사이언스 엘엘씨 2',4'-difluoro-2'-methyl substituted nucleoside derivatives as inhibitors of hcv rna replication
US9073960B2 (en) 2011-12-22 2015-07-07 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
JP2015503506A (en) * 2011-12-22 2015-02-02 アリオス バイオファーマ インク. Substituted nucleosides, nucleotides and analogs thereof
US11021509B2 (en) 2011-12-22 2021-06-01 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US10464965B2 (en) 2011-12-22 2019-11-05 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US9441007B2 (en) 2012-03-21 2016-09-13 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US10485815B2 (en) 2012-03-21 2019-11-26 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
USRE48171E1 (en) 2012-03-21 2020-08-25 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US9012427B2 (en) 2012-03-22 2015-04-21 Alios Biopharma, Inc. Pharmaceutical combinations comprising a thionucleotide analog
WO2013177219A1 (en) * 2012-05-22 2013-11-28 Idenix Pharmaceuticals, Inc. D-amino acid compounds for liver disease
AU2013266393B2 (en) * 2012-05-22 2017-09-28 Idenix Pharmaceuticals Llc D-amino acid compounds for liver disease
US10717758B2 (en) * 2012-05-22 2020-07-21 Idenix Pharmaceuticals Llc D-amino acid compounds for liver disease
US20180258130A1 (en) * 2012-05-22 2018-09-13 Idenix Pharmaceuticals Llc D-amino acid compounds for liver disease
EA031301B1 (en) * 2012-05-22 2018-12-28 Иденикс Фармасьютикалз Ллс D-amino acid chemical compounds for treating liver diseases
US10774106B2 (en) 2012-05-25 2020-09-15 Janssen Sciences Ireland Unlimited Company Uracyl spirooxetane nucleosides
US9845336B2 (en) 2012-05-25 2017-12-19 Janssen Sciences Ireland Uc Uracyl spirooxetane nucleosides
US9422323B2 (en) 2012-05-25 2016-08-23 Janssen Sciences Ireland Uc Uracyl spirooxetane nucleosides
US10301347B2 (en) 2012-05-25 2019-05-28 Janssen Sciences Ireland Unlimited Company Uracyl spirooxetane nucleosides
US10544184B2 (en) 2012-05-25 2020-01-28 Janssen Sciences Ireland Unlimited Company Uracyl spirooxetane nucleosides
US10040814B2 (en) 2012-05-25 2018-08-07 Janssen Sciences Ireland Uc Uracyl spirooxetane nucleosides
WO2014008236A1 (en) 2012-07-03 2014-01-09 Bristol-Myers Squibb Company Process for preparing diastereomerically enriched phosphoramidate derivatives of nucleoside compounds for treatment of viral infections
AU2013329521B2 (en) * 2012-10-08 2018-04-19 Centre National De La Recherche Scientifique 2'-chloro nucleoside analogs for HCV infection
KR20150084830A (en) * 2012-10-08 2015-07-22 아이데닉스 파마슈티칼스, 인코포레이티드 2'-chloro nucleoside analogs for hcv infection
WO2014058801A1 (en) * 2012-10-08 2014-04-17 Idenix Pharmaceuticals, Inc. 2'-chloro nucleoside analogs for hcv infection
EA030189B1 (en) * 2012-10-08 2018-07-31 Иденикс Фармасьютикалз Ллс 2'-chloro nucleoside analogs for hcv infection
KR102001280B1 (en) * 2012-10-08 2019-07-17 아이데닉스 파마슈티칼스 엘엘씨 2'-chloro nucleoside analogs for hcv infection
WO2014078427A1 (en) * 2012-11-14 2014-05-22 Idenix Pharmaceuticals, Inc. D-alanine ester of rp-nucleoside analog
WO2014078436A1 (en) * 2012-11-14 2014-05-22 Idenix Pharmaceuticals, Inc. D-alanine ester of sp-nucleoside analog
WO2014099941A1 (en) * 2012-12-19 2014-06-26 Idenix Pharmaceuticals, Inc. 4'-fluoro nucleosides for the treatment of hcv
US10112966B2 (en) 2012-12-21 2018-10-30 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US11485753B2 (en) 2012-12-21 2022-11-01 Janssen Pharmaceutica Nv Substituted nucleosides, nucleotides and analogs thereof
US10683320B2 (en) 2012-12-21 2020-06-16 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US10487104B2 (en) 2012-12-21 2019-11-26 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
TWI641615B (en) * 2012-12-21 2018-11-21 美商艾洛斯生物製藥公司 Substituted nucleosides, nucleotides and analogs thereof
AU2018203337B2 (en) * 2012-12-21 2019-12-05 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
EP3912984A1 (en) * 2012-12-21 2021-11-24 Janssen BioPharma, Inc. 4'-fluoro-nucleosides, 4'-fluoro-nucleotides and analogs thereof for the treatment of hcv
US9249174B2 (en) 2012-12-21 2016-02-02 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US10793591B2 (en) 2012-12-21 2020-10-06 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
EP2935303A4 (en) * 2012-12-21 2016-08-10 Alios Biopharma Inc Substituted nucleosides, nucleotides and analogs thereof
WO2014100505A1 (en) 2012-12-21 2014-06-26 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US10144755B2 (en) 2012-12-21 2018-12-04 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
AU2020200499B2 (en) * 2012-12-21 2021-05-06 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
EP3421482A1 (en) * 2012-12-21 2019-01-02 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US9243022B2 (en) 2012-12-21 2016-01-26 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
US10039779B2 (en) 2013-01-31 2018-08-07 Gilead Pharmasset Llc Combination formulation of two antiviral compounds
WO2014137926A1 (en) * 2013-03-04 2014-09-12 Idenix Pharmaceuticals, Inc. 3'-deoxy nucleosides for the treatment of hcv
AU2014225052B2 (en) * 2013-03-08 2016-11-10 Nanjing Sanhome Pharmaceutical Co., Ltd. Novel nucleoside phosphoramidate compound and use thereof
EP2940031A4 (en) * 2013-03-08 2016-01-27 Nanjing Sanhome Pharmaceutical Co Ltd Novel nucleoside phosphoramidate compound and use thereof
KR101857337B1 (en) * 2013-03-08 2018-05-11 난징 산홈 팔마세우티칼 컴퍼니 리미티드 Novel nucleoside phosphoramidate compound and use thereof
US9963480B2 (en) 2013-03-08 2018-05-08 Nanjing Sanhome Pharmaceutical Co., Ltd. Nucleoside phosphoramidate compound and use thereof
JP2016510043A (en) * 2013-03-08 2016-04-04 ナンジン・サンホーム・ファーマシューティカル・カンパニー・リミテッドNanjing Sanhome Pharmaceutical Co., Ltd. Novel nucleoside phosphoramidate compounds and uses thereof
WO2014135107A1 (en) 2013-03-08 2014-09-12 南京圣和药业有限公司 Novel nucleoside phosphoramidate compound and use thereof
EA025878B1 (en) * 2013-03-22 2017-02-28 Александр Васильевич Иващенко Alkyl 2-{[(2r,3s,5r)-5-(4-amino-2-oxo-2h-pyrimidin-1-yl)-3-hydroxy-tetrahydro-furan-2-yl-methoxy]phenoxy-phosphoryl-amino}propionates, nucleoside inhibitors of hcv ns5b rna-polymerase, methods for production and use thereof
WO2014148949A1 (en) * 2013-03-22 2014-09-25 Асави, Ллс Alkyl 2-{[(2r,3s,5r)-5-(4-amino-2-oxo-2н-pyrimidin-1-yl)-3-hydroxy- tetrahydro-furan-2-yl-methoxy]-phenoxy-phosphoryl-amino}-propionates, nucleoside inhibitors of hcv ns5b rna-polymerase, and methods for producing and use thereof
RU2534613C2 (en) * 2013-03-22 2014-11-27 Александр Васильевич Иващенко Alkyl2-{[(2r,3s,5r)-5-(4-amino-2-oxo-2h-pyrimidine-1-yl)- -hydroxy- tetrahydro-furan-2-ylmethoxy]-phenoxy-phosphorylamino}-proptonates, nucleoside inhibitors of rna-polymerase hcv ns5b, methods for producing and using them
WO2014165542A1 (en) * 2013-04-01 2014-10-09 Idenix Pharmaceuticals, Inc. 2',4'-fluoro nucleosides for the treatment of hcv
EP2996695A4 (en) * 2013-05-16 2016-12-14 Riboscience Llc 4'-fluor0-2'-methyl substituted nucleoside derivatives
US9895442B2 (en) 2013-05-16 2018-02-20 Riboscience Llc 4′-fluoro-2′-methyl substituted nucleoside derivatives as inhibitors of HCV RNA replication
AU2014265293B2 (en) * 2013-05-16 2019-07-18 Riboscience Llc 4'-Fluoro-2'-methyl substituted nucleoside derivatives
WO2014186637A1 (en) 2013-05-16 2014-11-20 Riboscience Llc 4'-fluor0-2'-methyl substituted nucleoside derivatives
US10953030B2 (en) 2013-05-16 2021-03-23 Riboscience Llc 4′-fluoro-2′-methyl substituted nucleoside derivatives as inhibitors of HCV RNA replication
WO2014197578A1 (en) * 2013-06-05 2014-12-11 Idenix Pharmaceuticals, Inc. 1',4'-thio nucleosides for the treatment of hcv
US10696708B2 (en) 2013-06-26 2020-06-30 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
WO2015017713A1 (en) * 2013-08-01 2015-02-05 Idenix Pharmaceuticals, Inc. D-amino acid phosphoramidate pronucleotides of halogeno pyrimidine compounds for liver disease
US11707479B2 (en) 2013-08-27 2023-07-25 Gilead Sciences, Inc. Combination formulation of two antiviral compounds
US11116783B2 (en) 2013-08-27 2021-09-14 Gilead Pharmasset Llc Combination formulation of two antiviral compounds
US9481703B2 (en) 2013-09-04 2016-11-01 Medivir Ab HCV polymerase inhibitors
US9540411B2 (en) 2013-09-04 2017-01-10 Medivir Ab HCV polymerase inhibitors
US9828408B2 (en) 2013-09-04 2017-11-28 Medivir Ab HCV polymerase inhibitors
EP3252066A1 (en) 2013-09-04 2017-12-06 Medivir Ab Hcv polymerase inhibitors
US10106571B2 (en) 2013-09-04 2018-10-23 Medivir Ab HCV polymerase inhibitors
WO2015034420A1 (en) 2013-09-04 2015-03-12 Medivir Ab Hcv polymerase inhibitors
US10370401B2 (en) 2013-10-11 2019-08-06 Janssen Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
EA027990B1 (en) * 2013-10-11 2017-09-29 Андрей Александрович ИВАЩЕНКО Substituted (2r,3r,5r)-3-hydroxy-(5-pyrimidin-1-yl)tetrahydrofuran-2-ylmethyl aryl phosphoramidates
WO2015053662A1 (en) * 2013-10-11 2015-04-16 Андрей Александрович ИВАЩЕНКО Substituted (2r, 3r, 5r)-3-hydroxy-(5-pyrimidin-1-yl) tetrahydrofuran-2-ylmethyl aryl phosphoramidates
US9862743B2 (en) 2013-10-11 2018-01-09 Alios Biopharma, Inc. Substituted nucleosides, nucleotides and analogs thereof
WO2015056213A1 (en) 2013-10-17 2015-04-23 Medivir Ab Hcv polymerase inhibitors
WO2015061683A1 (en) * 2013-10-25 2015-04-30 Idenix Pharmaceuticals, Inc. D-amino acid phosphoramidate and d-alanine thiophosphoramidate pronucleotides of nucleoside compounds useful for the treatment of hcv
CN104650171A (en) * 2013-11-25 2015-05-27 天津市汉康医药生物技术有限公司 Sofosbuvir sesquihydrate compound
WO2015081297A1 (en) * 2013-11-27 2015-06-04 Idenix Pharmaceuticals, Inc. 2'-dichloro and 2'-fluoro-2'-chloro nucleoside analogues for hcv infection
RU2553996C1 (en) * 2013-11-27 2015-06-20 Андрей Александрович Иващенко Substituted (2r,3r,5r)-3-hydroxy-(5-pyrimidin-1-yl)tetrahydrofuran-2-ylmethyl aryl phosphoramidates
WO2015099989A1 (en) 2013-12-23 2015-07-02 Gilead Pharmasset Llc Crystalline forms of antiviral sofosbuvir analogues
MD20160087A2 (en) * 2013-12-23 2016-12-31 Gilead Pharmasset Llc. Crystalline forms of an antiviral compound
WO2015097605A1 (en) 2013-12-23 2015-07-02 Mylan Laboratories Ltd. Process for the preparation of sofosbuvir
US10100075B2 (en) 2013-12-23 2018-10-16 Mylan Laboratories Limited Process for the preparation of sofosbuvir
WO2015101183A1 (en) * 2014-01-02 2015-07-09 江苏豪森药业股份有限公司 Uracil nucleotide analogs, preparation methods therefor and uses thereof
WO2015158317A1 (en) 2014-04-15 2015-10-22 Zentiva, K.S. Use of a l,3j5-triazin-2-yl phosphoramidate compound in the synthesis of sofosbuvir
WO2015164812A1 (en) * 2014-04-24 2015-10-29 Cocrystal Pharma, Inc. 2' -disubstituted nucleoside analogs for treatment of the flaviviridae family of viruses and cancer
EP3134423A4 (en) * 2014-04-24 2017-11-29 Cocrystal Pharma, Inc. 2' -disubstituted nucleoside analogs for treatment of the flaviviridae family of viruses and cancer
US11203599B2 (en) 2014-06-11 2021-12-21 Gilead Pharmasset Llc Solid forms of an antiviral compound
US10214553B2 (en) 2014-06-13 2019-02-26 Teva Pharmaceuticals International Gmbh Solid state forms of sofosbuvir
WO2016008461A1 (en) 2014-07-17 2016-01-21 Zentiva, K.S. A new form of sofosbuvir and a method of its preparation
US10526363B2 (en) 2014-08-15 2020-01-07 Merck Sharp & Dohme Corp. Substituted phosphoramidate compounds and uses thereof
WO2016035006A1 (en) * 2014-09-01 2016-03-10 Dr. Reddy’S Laboratories Limited Novel nucleotide analogs, process for the preparation of sofosbuvir and its analogs, novel forms of sofosbuvir and solid dispersion of sofosbuvir
WO2016042576A1 (en) 2014-09-16 2016-03-24 Cadila Healthcare Limited Co-crystal of sofosbuvir and amino acid and process for preparation thereof
US9949994B2 (en) 2014-10-29 2018-04-24 Gilead Sciences, Inc. Methods for treating Filoviridae virus infections
US11266666B2 (en) 2014-10-29 2022-03-08 Gilead Sciences, Inc. Methods for treating Filoviridae virus infections
US10251898B2 (en) 2014-10-29 2019-04-09 Gilead Sciences, Inc. Methods for treating Filoviridae virus infections
US11344565B2 (en) 2014-10-29 2022-05-31 Gilead Sciences, Inc. Methods for the preparation of ribosides
US9724360B2 (en) 2014-10-29 2017-08-08 Gilead Sciences, Inc. Methods for treating Filoviridae virus infections
US10695357B2 (en) 2014-10-29 2020-06-30 Gilead Sciences, Inc. Methods for treating filoviridae virus infections
RU2567854C1 (en) * 2014-11-11 2015-11-10 Александр Васильевич Иващенко Nucleoside inhibitors of rna-polymerase hcv ns5b, methods for production and use thereof
US11447518B2 (en) 2014-12-15 2022-09-20 Emory University Phosphoramidates for the treatment of hepatitis B virus
US11981699B2 (en) 2014-12-15 2024-05-14 Emory University Phosphoramidates for the treatment of hepatitis B virus
WO2016128453A1 (en) 2015-02-13 2016-08-18 Sandoz Ag Pharmaceutical compositions comprising ledipasvir and sofosbuvir
ITUB20150109A1 (en) * 2015-03-05 2016-09-05 Hc Pharma Ag USEFUL COMPOUNDS FOR THE TREATMENT OF HEPATITIS C
RU2764767C2 (en) * 2015-03-06 2022-01-21 Атеа Фармасьютикалс, Инк. β-D-2ʹ-DEOXY-2ʹ-α-FLUORO-2ʹ-β-C-SUBSTITUTED-2-MODIFIED-N6-SUBSTITUTED PURINE NUCLEOTIDES FOR TREATMENT OF DISEASES CAUSED BY HCV
WO2016151542A1 (en) * 2015-03-26 2016-09-29 Quimica Sintetica, S.A. Nucleoside phosphoramidates useful for the treatment of viral infections and preparation thereof
US10407456B2 (en) 2015-03-26 2019-09-10 Quimica Sintetica, S.A. Nucleoside phosphoramidates useful for the treatment of viral infections and preparation thereof
WO2016177300A1 (en) * 2015-05-07 2016-11-10 苏州旺山旺水生物医药有限公司 (2'r)-2'-deoxy-2'-halo-2'-methyl uridine derivative, and preparation method and use thereof
WO2016189443A3 (en) * 2015-05-23 2017-01-12 Virupaksha Organics Limited Solid forms of nucleoside phosphoramidate
WO2016189040A1 (en) 2015-05-26 2016-12-01 Sandoz Ag Selective process for synthesis of nucleoside phosphoramidates
WO2016196735A2 (en) 2015-06-03 2016-12-08 Teva Pharmaceuticals International Gmbh Improved processes for the preparation of sofosbuvir and intermediates thereof
US10676498B2 (en) 2015-06-03 2020-06-09 Teva Pharmaceuticals International Gmbh Processes for the preparation of sofosbuvir and intermediates thereof
WO2016206663A1 (en) 2015-06-26 2016-12-29 Zentiva, K.S. A pharmaceutical formulation of sofosbuvir
ITUB20152109A1 (en) * 2015-07-13 2017-01-13 Quim Sintetica S A PHOSPHORAMIDATE NUCLEOSIDES USEFUL FOR THE TREATMENT OF VIRAL INFECTIONS AND THEIR PREPARATION
US10053474B2 (en) 2015-09-02 2018-08-21 Abbvie Inc. Anti-viral compounds
US9676797B2 (en) 2015-09-02 2017-06-13 Abbvie Inc. Anti-viral compounds
US10695361B2 (en) 2015-09-16 2020-06-30 Gilead Sciences, Inc. Methods for treating arenaviridae and coronaviridae virus infections
US11007208B2 (en) 2015-09-16 2021-05-18 Gilead Sciences, Inc. Methods for treating arenaviridae and coronaviridae virus infections
US11382926B2 (en) 2015-09-16 2022-07-12 Gilead Sciences, Inc. Methods for treating Arenaviridae and Coronaviridae virus infections
US10251904B2 (en) 2015-09-16 2019-04-09 Gilead Sciences, Inc. Methods for treating arenaviridae and coronaviridae virus infections
WO2017077552A1 (en) 2015-11-03 2017-05-11 Mylan Laboratories Limited Process for the preparation of sofosbuvir
EP3377512A4 (en) * 2015-11-16 2019-09-18 Ichorion Therapeutics, Inc. Nucleic acid prodrugs
US11479576B2 (en) 2015-11-16 2022-10-25 Avalo Therapeutics, Inc. Nucleic acid prodrugs
US10745435B2 (en) 2015-11-16 2020-08-18 Cerecor, Inc. Nucleic acid prodrugs
WO2017162169A1 (en) * 2016-03-25 2017-09-28 江苏天士力帝益药业有限公司 Uridine phosphoramide prodrug, preparation method therefor, and medicinal uses thereof
CN109071588B (en) * 2016-03-25 2021-07-06 江苏天士力帝益药业有限公司 Uridine phosphamide prodrug, preparation method and application thereof in medicine
US10745434B2 (en) 2016-03-25 2020-08-18 Jiangsu Tasly Diyi Pharmaceutical Co., Ltd. Uridine phosphoramide prodrug, preparation method therefor, and medicinal uses thereof
CN109071588A (en) * 2016-03-25 2018-12-21 江苏天士力帝益药业有限公司 Uridine phosphamide prodrug, preparation method and its application in medicine
CN107226831A (en) * 2016-03-25 2017-10-03 江苏天士力帝益药业有限公司 Uridine phosphamide prodrug, its preparation method and its in application pharmaceutically
RU2740760C2 (en) * 2016-03-25 2021-01-20 Цзянсу Тасли Дии Фармасьютикал Ко., Лтд. Prodrug based on uridine phosphoramide, a method for production thereof and use thereof in medicine
WO2017184670A2 (en) 2016-04-22 2017-10-26 Gilead Sciences, Inc. Methods for treating zika virus infections
US11192914B2 (en) 2016-04-28 2021-12-07 Emory University Alkyne containing nucleotide and nucleoside therapeutic compositions and uses related thereto
WO2017189978A1 (en) 2016-04-28 2017-11-02 Emory University Alkyne containing nucleotide and nucleoside therapeutic compositions and uses related thereto
WO2017190715A1 (en) 2016-05-05 2017-11-09 Zentiva, K.S. An amorphous form of sofosbuvir, a method of its preparation and its stabilization
WO2017205078A1 (en) 2016-05-27 2017-11-30 Gilead Sciences, Inc. Methods for treating hepatitis b virus infections using ns5a, ns5b or ns3 inhibitors
US10912814B2 (en) 2016-06-02 2021-02-09 Gilead Pharmasset Llc Combination formulation of three antiviral compounds
US11338007B2 (en) 2016-06-02 2022-05-24 Gilead Sciences, Inc. Combination formulation of three antiviral compounds
US11364257B2 (en) 2016-06-24 2022-06-21 Emory University Phosphoramidates for the treatment of hepatitis B virus
US10202412B2 (en) 2016-07-08 2019-02-12 Atea Pharmaceuticals, Inc. β-D-2′-deoxy-2′-substituted-4′-substituted-2-substituted-N6-substituted-6-aminopurinenucleotides for the treatment of paramyxovirus and orthomyxovirus infections
WO2018013937A1 (en) 2016-07-14 2018-01-18 Atea Pharmaceuticals, Inc. Beta-d-2'-deoxy-2'-alpha-fluoro-2'-beta-c-substituted-4'-fluoro-n6-substituted-6-amino-2-substituted purine nucleotides for the treatment of hepatitis c virus infection
US10239910B2 (en) 2016-07-20 2019-03-26 Optimus Drugs (P) Limited Process for the preparation of sofosbuvir
EP3331354A4 (en) * 2016-07-28 2019-08-07 Asavi, LLC Phosphoramidate nucleoside prodrug for treating viral diseases and cancer, processes for their preparation and their use
WO2018033593A1 (en) 2016-08-19 2018-02-22 Sandoz Ag Sofosbuvir derivatives for the treatment of hepatitis c
WO2018134343A1 (en) 2017-01-19 2018-07-26 Sandoz Ag Synthesis of phosphoramidates
RU2644156C1 (en) * 2017-02-28 2018-02-08 Александр Васильевич Иващенко Prodrug of polymerase ns5b hcv inhibitor, method for its preparation and application
WO2018160089A1 (en) * 2017-02-28 2018-09-07 Александр Васильевич ИВАЩЕНКО Prodrug of hcv ns5b polymerase inhibitor and method for producing and using same
WO2018160088A1 (en) * 2017-02-28 2018-09-07 Александр Васильевич ИВАЩЕНКО Nucleotides containing an n-[(s)-1-cyclobutoxycarbonyl]phosphoramidate fragment, analogs thereof, and use thereof
CN110382514A (en) * 2017-02-28 2019-10-25 亚历山大·瓦西里耶维奇·伊瓦切恩科 The prodrug of HCV NS5B polymerase inhibitors and its production and application method
RU2659388C1 (en) * 2017-02-28 2018-07-02 Васильевич Иващенко Александр Nucleotides including n-[(s)-1-cyclobutoxycarbonyl]phosphoramidate fragment, their analogs and their application
US11260070B2 (en) 2017-03-14 2022-03-01 Gilead Sciences, Inc. Methods of treating feline coronavirus infections
US10682368B2 (en) 2017-03-14 2020-06-16 Gilead Sciences, Inc. Methods of treating feline coronavirus infections
US12030906B2 (en) 2017-05-01 2024-07-09 Gilead Sciences, Inc. Crystalline forms of (s)-2-ethylbutyl 2-(((s)-(((2r,3s,4r,5r)-5-(4-aminopyrrolo[2,1-f] [1,2,4]triazin-7-yl)-5-cyano-3,4-dihydroxytetrahydrofuran-2-yl)methoxy) (phenoxy) phosphoryl)amino)propanoate
US10836787B2 (en) 2017-05-01 2020-11-17 Gilead Sciences, Inc. Crystalline forms of (S)-2-ethylbutyl 2-(((S)-(((2R,3S,4R,5R)-5- (4-aminopyrrolo[2,1-f] [1,2,4]triazin-7-yl)-5-cyano-3,4-dihydroxytetrahydrofuran-2-yl)methoxy)(phenoxy) phosphoryl)amino)propanoate
US11597742B2 (en) 2017-05-01 2023-03-07 Gilead Sciences, Inc. Crystalline forms of (S)-2-ethylbutyl 2-(((S)-(((2R,3S,4R,5R)-5-(4-aminopyrrolo[2,1-f] [1,2,4]triazin-7-yl)-5-cyano-3,4-dihydroxytetrahydrofuran-2-yl)methoxy) (phenoxy) phosphoryl)amino)propanoate
US10675296B2 (en) 2017-07-11 2020-06-09 Gilead Sciences, Inc. Compositions comprising an RNA polymerase inhibitor and cyclodextrin for treating viral infections
US11975017B2 (en) 2017-07-11 2024-05-07 Gilead Sciences, Inc. Compositions comprising an RNA polymerase inhibitor and cyclodextrin for treating viral infections
US11266681B2 (en) 2017-07-11 2022-03-08 Gilead Sciences, Inc. Compositions comprising an RNA polymerase inhibitor and cyclodextrin for treating viral infections
WO2019025600A1 (en) 2017-08-03 2019-02-07 Sandoz Ag Sofosbuvir hydrate
US11414451B2 (en) 2017-09-18 2022-08-16 NuCana plc Floxuridine synthesis
US10682369B2 (en) 2017-09-21 2020-06-16 Riboscience Llc 4′-fluoro-2′-methyl substituted nucleoside derivatives as inhibitors of HCV RNA replication
US11351186B2 (en) 2017-09-21 2022-06-07 Riboscience Llc 4′-fluoro-2′-methyl substituted nucleoside derivatives as inhibitors of HCV RNA replication
US11660307B2 (en) 2020-01-27 2023-05-30 Gilead Sciences, Inc. Methods for treating SARS CoV-2 infections
US11613553B2 (en) 2020-03-12 2023-03-28 Gilead Sciences, Inc. Methods of preparing 1′-cyano nucleosides
US12012431B2 (en) 2020-03-12 2024-06-18 Gilead Sciences, Inc. Methods of preparing 1′-cyano nucleosides
WO2021202669A2 (en) 2020-04-01 2021-10-07 Reyoung Corporation Nucleoside and nucleotide conjugate compounds and uses thereof
US11701372B2 (en) 2020-04-06 2023-07-18 Gilead Sciences, Inc. Inhalation formulations of 1'-cyano substituted carba-nucleoside analogs
US11903953B2 (en) 2020-05-29 2024-02-20 Gilead Sciences, Inc. Remdesivir treatment methods
US11975012B2 (en) 2020-05-29 2024-05-07 Gilead Sciences, Inc. Remdesivir treatment methods
US11491169B2 (en) 2020-05-29 2022-11-08 Gilead Sciences, Inc. Remdesivir treatment methods
US11939347B2 (en) 2020-06-24 2024-03-26 Gilead Sciences, Inc. 1′-cyano nucleoside analogs and uses thereof
US11926645B2 (en) 2020-08-27 2024-03-12 Gilead Sciences, Inc. Compounds and methods for treatment of viral infections
US11814406B2 (en) 2020-08-27 2023-11-14 Gilead Sciences, Inc. Compounds and methods for treatment of viral infections
US11845755B2 (en) 2022-03-02 2023-12-19 Gilead Sciences, Inc. Compounds and methods for treatment of viral infections
US11780844B2 (en) 2022-03-02 2023-10-10 Gilead Sciences, Inc. Compounds and methods for treatment of viral infections

Also Published As

Publication number Publication date
AU2008232827B2 (en) 2012-08-16
US9085573B2 (en) 2015-07-21
TWI357332B (en) 2012-02-01
US9585906B2 (en) 2017-03-07
US8580765B2 (en) 2013-11-12
NZ599206A (en) 2013-08-30
SG2014011704A (en) 2014-05-29
US20210196741A1 (en) 2021-07-01
BRPI0809654A2 (en) 2015-04-22
CN109456373A (en) 2019-03-12
CO6260023A2 (en) 2011-03-22
DE202008018643U1 (en) 2017-03-16
RU2012152811A (en) 2014-06-20
JP2015024998A (en) 2015-02-05
LTPA2014040I1 (en) 2021-08-10
EP4282482A2 (en) 2023-11-29
AR066898A1 (en) 2009-09-23
CY2014047I2 (en) 2017-07-12
HK1206033A1 (en) 2015-12-31
EP2801580B1 (en) 2023-09-13
US20180000855A1 (en) 2018-01-04
NO2014029I2 (en) 2014-11-18
KR20100016041A (en) 2010-02-12
AU2008232827A1 (en) 2008-10-09
NO2021031I1 (en) 2021-07-26
US10183037B2 (en) 2019-01-22
US8906880B2 (en) 2014-12-09
CN109776637A (en) 2019-05-21
EP2826784B1 (en) 2019-06-26
CN109776637B (en) 2023-04-18
EP2824109A1 (en) 2015-01-14
ES2492470T3 (en) 2014-09-09
JP2014196305A (en) 2014-10-16
RU2478104C2 (en) 2013-03-27
US20150231166A1 (en) 2015-08-20
EP2203462A2 (en) 2010-07-07
JP2012121903A (en) 2012-06-28
LTC2203462I2 (en) 2021-08-25
US20130029929A1 (en) 2013-01-31
KR20150008929A (en) 2015-01-23
AU2008232827C1 (en) 2015-04-09
CN104402955A (en) 2015-03-11
CY1115488T1 (en) 2017-01-04
PL2826784T3 (en) 2019-11-29
JP2016023187A (en) 2016-02-08
IL217228A0 (en) 2012-01-31
SI2826784T1 (en) 2019-10-30
ES2745462T3 (en) 2020-03-02
JP2020100617A (en) 2020-07-02
RU2651892C3 (en) 2020-01-21
NL300704I1 (en) 2015-12-29
CL2008000902A1 (en) 2008-11-07
KR101527701B1 (en) 2015-06-09
SG179445A1 (en) 2012-04-27
NL300704I2 (en) 2015-12-29
ES2963716T3 (en) 2024-04-01
PT2826784T (en) 2019-09-12
EP2826784A1 (en) 2015-01-21
JP5539419B2 (en) 2014-07-02
TW200904453A (en) 2009-02-01
CN109970818A (en) 2019-07-05
US20140315852A1 (en) 2014-10-23
PT2203462E (en) 2014-08-29
IL201239A0 (en) 2010-05-31
PH12014502771A1 (en) 2015-10-26
CN116731098A (en) 2023-09-12
MY147409A (en) 2012-11-30
EP2792680A1 (en) 2014-10-22
SI2801580T1 (en) 2024-01-31
US8735372B2 (en) 2014-05-27
PT2801580T (en) 2023-12-06
US8334270B2 (en) 2012-12-18
US11642361B2 (en) 2023-05-09
IL222810A0 (en) 2012-12-31
IL201239A (en) 2013-03-24
US20240139227A1 (en) 2024-05-02
WO2008121634A3 (en) 2010-05-20
HUS1400059I1 (en) 2017-07-28
JP2018197245A (en) 2018-12-13
US8957046B2 (en) 2015-02-17
EP2203462B1 (en) 2014-05-21
RU2018103329A3 (en) 2021-05-24
US20140288020A1 (en) 2014-09-25
HK1206034A1 (en) 2015-12-31
JP2017132754A (en) 2017-08-03
US20110257122A1 (en) 2011-10-20
EP4282482A3 (en) 2024-01-17
CN101918425B (en) 2023-05-02
CN101918425A (en) 2010-12-15
ZA201200310B (en) 2013-05-29
RU2018103329A (en) 2019-08-05
FR14C0082I2 (en) 2015-11-13
PL2203462T3 (en) 2015-01-30
RU2651892C2 (en) 2018-04-24
LU92600I2 (en) 2015-11-24
PL2801580T3 (en) 2024-02-12
JP5774749B2 (en) 2015-09-09
NZ579880A (en) 2012-05-25
US20140187511A1 (en) 2014-07-03
IL217228A (en) 2013-08-29
US20100016251A1 (en) 2010-01-21
CY2014047I1 (en) 2017-07-12
SI2203462T1 (en) 2014-09-30
CN116731099A (en) 2023-09-12
ZA200906647B (en) 2013-06-26
HRP20140667T1 (en) 2014-10-10
US20140045783A1 (en) 2014-02-13
FR14C0082I1 (en) 2014-12-26
JP2010532747A (en) 2010-10-14
KR20120034801A (en) 2012-04-12
CA2682230C (en) 2014-04-22
RU2009139968A (en) 2011-05-10
EP2801580A1 (en) 2014-11-12
KR101525293B1 (en) 2015-06-03
US7964580B2 (en) 2011-06-21
US12121529B2 (en) 2024-10-22
EP2933260A1 (en) 2015-10-21
MX2009010401A (en) 2009-11-10
JP5318085B2 (en) 2013-10-16
CA2682230A1 (en) 2008-10-09
CN109970830A (en) 2019-07-05
BRPI0823519A2 (en) 2015-10-27
KR101432860B1 (en) 2014-08-26
JP6377781B2 (en) 2018-08-22
DK2203462T3 (en) 2014-08-11
NO2014029I1 (en) 2014-12-01
EP2203462B2 (en) 2024-09-25

Similar Documents

Publication Publication Date Title
US20240139227A1 (en) Nucleoside phosphoramidate prodrugs
US8716263B2 (en) Synthesis of purine nucleosides
CA2727495C (en) Nucleoside cyclicphosphates
AU2009329917B2 (en) Nucleoside analogs
US20110243886A1 (en) Compounds and pharmaceutical compositions for the treatment of viral infections
JP2005533824A (en) 2'-C-methyl-3'-OL-valine ester ribofuranosyl cytidine for the treatment of Flaviviridae infections
AU2014233579B2 (en) Nucleoside phosphoramidate prodrugs

Legal Events

Date Code Title Description
WWE Wipo information: entry into national phase

Ref document number: 200880018024.2

Country of ref document: CN

WWE Wipo information: entry into national phase

Ref document number: 2008232827

Country of ref document: AU

WWE Wipo information: entry into national phase

Ref document number: 579880

Country of ref document: NZ

WWE Wipo information: entry into national phase

Ref document number: 2008732818

Country of ref document: EP

ENP Entry into the national phase

Ref document number: 2682230

Country of ref document: CA

WWE Wipo information: entry into national phase

Ref document number: MX/A/2009/010401

Country of ref document: MX

WWE Wipo information: entry into national phase

Ref document number: 12009501847

Country of ref document: PH

ENP Entry into the national phase

Ref document number: 2010502196

Country of ref document: JP

Kind code of ref document: A

NENP Non-entry into the national phase

Ref country code: DE

ENP Entry into the national phase

Ref document number: 2008232827

Country of ref document: AU

Date of ref document: 20080326

Kind code of ref document: A

WWE Wipo information: entry into national phase

Ref document number: 3658/KOLNP/2009

Country of ref document: IN

WWE Wipo information: entry into national phase

Ref document number: 09120744

Country of ref document: CO

ENP Entry into the national phase

Ref document number: 20097022652

Country of ref document: KR

Kind code of ref document: A

WWE Wipo information: entry into national phase

Ref document number: 2009139968

Country of ref document: RU

WWE Wipo information: entry into national phase

Ref document number: 222810

Country of ref document: IL

ENP Entry into the national phase

Ref document number: PI0809654

Country of ref document: BR

Kind code of ref document: A2

Effective date: 20090930