US9352320B2 - Thermal cycling device with selectively openable sample port - Google Patents

Thermal cycling device with selectively openable sample port Download PDF

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US9352320B2
US9352320B2 US12/675,659 US67565908A US9352320B2 US 9352320 B2 US9352320 B2 US 9352320B2 US 67565908 A US67565908 A US 67565908A US 9352320 B2 US9352320 B2 US 9352320B2
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chamber
sample containers
port
gripping device
sample
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US20110008881A1 (en
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John Michael Corbett
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Qiagen Instruments AG
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Qiagen Instruments AG
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    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L7/00—Heating or cooling apparatus; Heat insulating devices
    • B01L7/52—Heating or cooling apparatus; Heat insulating devices with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/04—Closures and closing means
    • B01L2300/046—Function or devices integrated in the closure
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/06—Auxiliary integrated devices, integrated components
    • B01L2300/0609—Holders integrated in container to position an object
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/08—Geometry, shape and general structure
    • B01L2300/0803—Disc shape
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/18—Means for temperature control
    • B01L2300/1805—Conductive heating, heat from thermostatted solids is conducted to receptacles, e.g. heating plates, blocks
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2531/00—Reactions of nucleic acids characterised by
    • C12Q2531/10—Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
    • C12Q2531/125—Rolling circle
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
    • G01N2035/00346—Heating or cooling arrangements
    • G01N2035/00356—Holding samples at elevated temperature (incubation)
    • G01N2035/00366—Several different temperatures used
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
    • G01N35/0099—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor comprising robots or similar manipulators

Definitions

  • the present invention relates to thermal cycling devices and in particular to thermal cycling devices for nucleic acid amplification.
  • the invention is not limited to this particular field of use.
  • PCR Polymerase Chain Reaction
  • the PCR technique typically involves the step of denaturing a polynucleotide, followed by the step of annealing at least a pair of primer oligonucleotides to the denatured polynucleotide, i.e., hybridizing the primer to the denatured polynucleotide template.
  • an enzyme with polymerase activity catalyzes synthesis of a new polynucleotide strand that incorporates the primer oligonucleotide and uses the original denatured polynucleotide as a synthesis template.
  • This series of steps constitutes a PCR cycle.
  • Primer oligonucleotides are typically selected in pairs that can anneal to opposite strands of a given double-stranded polynucleotide sequence so that the region between the two annealing sites is amplified.
  • Denaturation of DNA typically takes place at around 90 to 95° C.
  • annealing a primer to the denatured DNA is typically performed at around 40 to 60° C.
  • the step of extending the annealed primers with a polymerase is typically performed at around 70 to 75° C. Therefore, during a PCR cycle the temperature of the reaction mixture must be varied, and varied many times during a multicycle PCR experiment.
  • the PCR technique has a wide variety of biological applications, including for example, DNA sequence analysis, probe generation, cloning of nucleic acid sequences, site-directed mutagenesis, detection of genetic mutations, diagnoses of viral infections, molecular “fingerprinting” and the monitoring of contaminating microorganisms in biological fluids and other sources.
  • thermocyclers In an effort to avoid several of these disadvantages, recent advances have seen the development of block thermal cyclers providing the simultaneous running of different temperature profiles, e.g. as disclosed in U.S. Pat. No. 5,601,141 and U.S. Pat. No. 6,558,947.
  • these thermocyclers suffer their own drawbacks. For example, they are relatively expensive and complex, require constant routine maintenance, temperature control is less than ideal and detection of the reaction(s) occurring the reaction containers is still difficult.
  • thermocyclers for PCR which provide accurate temperature control of the reaction mixtures, are not complex to use, can provide real-time analysis of the reaction occurring in the sample containers, and which can operate in a batch or a continuous mode whereby samples can be continuously added and/or removed from the thermocycler during cycling without thermally affecting samples which have only received part of the required number of thermal cycles.
  • the present invention seeks to overcome or ameliorate at least one of the disadvantages of the abovementioned arrangements, or to provide an alternative to existing arrangements.
  • a device for thermal cycling a plurality of samples including a chamber for housing a plurality of sample containers, the chamber having a selectively openable port, wherein one or more selected sample containers can be introduced to or withdrawn from the chamber through the port during thermal cycling.
  • the introduction or withdrawal of the one or more selected sample containers has a minimal effect on the temperature or thermal uniformity of the plurality of sample containers during thermal cycling.
  • the port is sized such that when in an open position, the chamber is not substantially open to the ambient atmosphere.
  • the port in the open position defines an aperture, the aperture being relatively small compared to an internal surface area of the chamber.
  • a gripping device is used to introduce or withdraw the one or more selected sample containers.
  • the port is in an open position for a minimal time to allow the gripping device to introduce or withdraw the one or more sample containers.
  • the gripping device may be sized and shaped such that the gripping device has a close fitting relationship with an aperture defined by the port in the open position. Further, an outer periphery of the port may have a rubber seal and an outer diameter of the gripping device may be sized to provide an air-tight seal when the gripping device is at least partially inserted therethrough.
  • the gripping device may include a flange, the flange being configured to seal against the port when the gripping device is at least partially inserted therethrough.
  • the gripping device may be substantially cylindrical in shape and the port has a circular opening.
  • the plurality of sample containers are supported on a platform housed in the chamber.
  • the platform may be a rotatable carousel rotatably mounted within the chamber.
  • the thermal cycling is configured for nucleic acid amplification.
  • the plurality of sample containers are configured for relatively rapid thermal equilibration and to allow for detection of the reaction mixture.
  • the plurality of sample containers may be formed from glass or plastic materials or a combination thereof.
  • the sample containers are tubes.
  • a plurality of connected sample containers may be introduced to or withdrawn from the chamber simultaneously.
  • the plurality of connected sample containers may be physically connected, for example forming part of a clip.
  • a clip may comprise any number of individual sample containers, for example 2, 3, 4, 5, 6, 7, 8, 9, 10 or more sample containers.
  • the device includes an elevating device for at least partially elevating the selected container(s) enabling a gripping device to grip the selected container(s).
  • a method for introducing one or more selected sample containers into, or withdrawing one or more selected sample containers from a chamber of a device in which a plurality of sample containers are being substantially uniformly thermally cycled, the chamber having a selectively openable port including the steps of:
  • the selected sample container(s) may be introduced or withdrawn without substantially affecting the temperature or thermal uniformity of the plurality of sample containers undergoing thermal cycling.
  • a method for performing thermal cycling of a plurality of samples in a device the device having a chamber for housing a plurality of sample containers, the chamber having a selectively openable port, the method including the step of introducing to or withdrawing from the chamber one or more selected sample containers through the port during thermal cycling.
  • the method is carried out with the device according to the first aspect.
  • a method for performing sequential thermal cycling of a plurality of samples including the steps of:
  • a method for performing thermal cycling of a plurality of samples being substantially uniformly thermally cycled in a chamber having a selectively openable port including the steps of:
  • a method for performing thermal cycling of a plurality of samples being substantially uniformly thermally cycled in a chamber having a selectively openable port including the steps of:
  • a device for introducing or withdrawing a sample container to or from a plurality of sample containers being substantially uniformly thermally cycled comprising a chamber for housing said plurality of sample containers, the chamber having a selectively openable port for admitting a gripping device for introducing or withdrawing said sample container without substantially affecting the temperature or thermal uniformity of the plurality of sample containers during the thermal cycling.
  • Also disclosed herein is a method for introducing or withdrawing a sample container to or from a plurality of sample containers being substantially uniformly thermally cycled in a chamber having a selectively openable port, the method comprising the steps of: opening the selectively openable port; and introducing or withdrawing the sample container to or from said plurality of sample containers during the thermal cycling without substantially affecting the temperature or thermal uniformity of said plurality of sample containers.
  • the sample container may be introduced or withdrawn using a gripping device.
  • the selectively openable port is closed after the sample container is introduced or withdrawn from the chamber.
  • the selectively openable port may be sized such that, when in its open position, the chamber is not substantially open to the ambient atmosphere.
  • the aperture defined by the port in its opened position is relatively small compared to the internal surface area of the chamber housing the plurality of sample containers undergoing thermal cycling. Accordingly, any loss of heating or cooling fluid from the chamber resulting from opening the port is small or negligible so as to have minimal effect on any pre-existing sample containers.
  • the heating and cooling means providing the thermal cycling have sufficient capacity such that they can accommodate for any loss of fluid from the chamber through the opened port such that the temperature in the chamber remains at the desired or predetermined level, and more importantly that the temperature of any existing samples is not substantially affected.
  • the heating/cooling fluid is air but could be other fluids as is well known in the art.
  • the selectively openable port is, according to one embodiment, adapted to be in the open position for the minimum time necessary to allow the gripping device to introduce or withdraw a sample container to or from the chamber.
  • the gripping device is sized and shaped so as to be in close fitting relationship with the aperture defined by the port in its open position to minimise ingress/egress of fluid to/from the chamber.
  • a rubber seal may be provided around the periphery of the port and the outer diameter of the gripping device may be sized so as to provide an air-tight seal.
  • a flange may also be provided on the gripping device so as to provide a seal with the port.
  • the gripping device may be substantially right cylindrical in shape and the port is circular.
  • the plurality of sample containers may be supported on a platform housed in the chamber adapted to be heated or cooled for providing the thermal cycling, for example for conducting nucleic acid amplification (e.g. PCR).
  • the platform is in one particular embodiment, a rotatable carousel rotatably mounted within the chamber, and is adapted to receive the sample containers in slots or apertures.
  • the chamber typically includes drive means for driving the rotatable carousel thereby applying a centrifugal force to the sample containers during cycling for maintaining the reaction mixture at the base of the sample container.
  • the Rotor-GeneTM family of thermocyclers are of particular applicability as they provide identical container-to-container conditions, excellent thermal control of the samples undergoing thermal cycling, and real-time analysis of the reaction mixtures. This is achieved, in part, by use of a rotor, the design of the heating and cooling systems and the associated optics for providing real-time analysis of the PCR reaction. The fact that samples are spinning ensures that all samples are heated and cooled at the same rate. Consequently, no equilibration times are required when a set point is reached.
  • sample containers are typically adapted for relatively rapid thermal equilibration and to allow for detection of the reaction mixture, and may be formed from glass or plastics materials.
  • the sample containers may be Eppendorf tubes. Any reaction mixture may be included into the sample containers however in the examples contemplated herein the reaction mixtures are for nucleic acid amplification and the theremocycler configured accordingly, i.e. the thermal cycling routine is particularly adapted for nucleic acid amplification as discussed above.
  • the gripping device introduces or withdraws the sample container from its seat/support on the carousel in a substantially axial motion with respect to the sample container.
  • the gripping device may clip the sample container in and out from the side of the rotor, or the sample container may be introduced/withdrawn from underneath the rotor.
  • the actual mode of introduction or withdrawal is less important than being able to introduce or withdraw a sample container during thermal cycling and without thermally disturbing any pre-existing samples.
  • thermal cycling can be begun with only a small number of samples, with the flexibility of being able to introduce additional samples at a later stage.
  • the aspects and embodiments described herein make it possible to analyze samples on an urgent basis, as may be required for example in the field of medical diagnostics, without the need for either an existing thermal cycling batch to finish or an entire device to become available.
  • the issue of balancing samples need to be considered.
  • this is typically accommodated by including diametrically opposed sample containers having the same weight.
  • the amount of material is usually very small typically no balancing issues present themselves.
  • relatively slow rotation such as 400 to 1000 RPM, balancing is less of an issue.
  • the device may be configured to take such balancing issues into account by ensuring that diametrically opposed counterweights are introduced/withdrawn together with the selected sample container(s), or by ensuring that that samples are added or removed in diametrically opposed pairs.
  • the rotor is typically temporarily stopped from rotation during the anneal stage of the thermal cycle (i.e. temperatures of 40 to 60° C.), and optionally the temperature temporarily held constant, to allow for the selected sample container introduction/withdrawal.
  • the rotor may then be indexed via computer control to the sample container position which is scheduled for withdrawal, or indexed to a vacant position to introduce a fresh sample container.
  • samples may be introduced or withdrawn not only at the anneal stage of a PCR-based thermal cycle but also at either the denature or extension stage with similar effect (i.e. 90 to 95° C.
  • thermocycler typically sample containers are introduced to or withdrawn from the chamber at the identical point on the thermal cycling routine, thereby allowing a continuous duty cycle for a thermocycler modified in accordance with the aspects and embodiments described herein.
  • the selectively openable port may then be opened for access to the sample containers and after one or more samples (having had their requisite number of thermal cycles) are withdrawn and/or one or more new samples introduced the port is closed and the rotor is again spun at its predetermined speed. If the thermal cycling routine was temporarily halted to allow for the introduction/withdrawal then it may be allowed to continue at this time.
  • the reactions occurring in the sample containers may also be continuously analyzed before, during and after sample container introduction and/or withdrawal.
  • Also disclosed herein is a method for introducing one or more selected sample containers into a chamber or withdrawing one or more selected sample containers from a chamber wherein a plurality of sample containers are supported on a rotatable carousel and being substantially uniformly thermally cycled in the chamber, the chamber having a selectively openable port and the rotatable carousel being rotated in the chamber, the method comprising the steps of:
  • the selected sample container(s) may be introduced or withdrawn without substantially affecting the temperature or thermal uniformity of the plurality of sample containers.
  • a computer controlled robotic arm having said gripping device at its distal end can be used to automatically introduce or withdraw the sample containers from the chamber.
  • the sample containers can be assembled on a rack and an operator can program the software operating both the thermocycler and the robotic arm to obtain the sample containers from the rack in a predetermined order and introduce them into the chamber, optionally during a thermal hold as described above.
  • the software can then proceed to count the number of thermal cycles that sample container receives and automatically withdraws the container once a predetermined number of cycles is reached and replaces the container on the rack, optionally introducing a new sample container from the rack into the carousel position which has just been vacated.
  • thermocycler can continue the thermal cycling process until the samples have received the required number of cycles and then withdraw the samples automatically. Further, it will be appreciated that if the rotor is full then new samples may be queued and introduced to the chamber when positions become available. It will further be appreciated that in the case of the urgent analysis of samples they can be introduced into the chamber as soon as positions in the chamber become available.
  • a device as described herein can provide for both a batch mode of operation or a continuous mode.
  • batch mode all positions in the chamber may be loaded, cycled for, e.g., 40 cycles, whilst acquiring data on the reactions occurring in the sample containers. All containers may then be removed and a new batch of sample containers introduced.
  • the continuous mode as described above could be implemented.
  • an elevating device may be provided for at least partially elevating a sample container from its support in the chamber to assist a gripping device in gripping the sample container.
  • an actuator may be provided underneath the rotor and in line with the selectively openable port.
  • a sample may be loaded into a sample container with an oil overlay and heated to 95° C. for a predetermined time by exposing the container to a separate 95° C. heating block to denature the sample prior to introducing the sample container into the chamber of the thermocycler.
  • software controlling the thermocycler may automatically slow the rotor and index it to the next available position in the rotor, allowing introduction of the denatured sample.
  • any completed samples can also be withdrawn at this stage. Subsequent samples can then be introduced at the identical point in the thermal profile so that every sample receives the same thermal treatment.
  • FIG. 1 is a top view of a chamber according to the invention showing a selectively openable port in its closed position;
  • FIG. 2 is a view similar to FIG. 1 , showing the port in its open position;
  • FIG. 3 is a view similar to FIG. 1 , showing the top cover of the chamber removed for clarity; the port is shown in its open position and the chamber cooling ports in their closed position;
  • FIG. 4 is a view similar to FIG. 3 , showing the port in its closed position and the chamber cooling ports in their open position;
  • FIG. 5 is a partly cut-away perspective front view of a device according to the invention, showing the gripping device introducing a sample container into the rotor;
  • FIG. 6 is a view similar to FIG. 5 , showing the sample container in the rotor at the loading/unloading position after having had a plurality of thermal cycles;
  • FIG. 7 is a view similar to FIG. 6 , showing the gripping device moving into the chamber to withdraw the sample container;
  • FIG. 8 is a view similar to FIG. 7 , showing the elevating device pushing the sample container from below such that the sample container protrudes from the rotor sufficiently such that the gripping device can grip the sample container and withdraw it from the chamber;
  • FIG. 9 is a view similar to FIG. 8 , showing the sample container fully withdrawn from the chamber;
  • FIG. 10 is view similar to FIG. 4 in a perspective view
  • FIG. 11 is a partly cut-away side view of a device according to the invention, showing the air cooler (blower) for cooling the chamber;
  • FIG. 12 is a flowchart of an example method of performing thermal cycling.
  • FIG. 13 is another flowchart of an example method of performing thermal cycling
  • FIG. 1 a device 11 for thermal cycling a plurality of samples is shown.
  • the device 11 includes a chamber 1 for housing a plurality of sample containers (which are further described below) and having a top cover 5 .
  • the chamber 1 has a selectively openable port 2 , where one or more selected sample containers can be introduced to or withdrawn from the chamber 1 through the port 2 during thermal cycling.
  • the introduction or withdrawal of the one or more selected sample containers has a minimal effect on the temperature or thermal uniformity of the plurality of sample containers during thermal cycling.
  • the port 2 can be sized such that when in an open position, the chamber 1 is not substantially open to the ambient atmosphere.
  • a chamber 1 for housing a plurality of sample containers (not shown) is provided.
  • the chamber 1 includes a selectively openable port 2 for admitting a gripping device 3 for introducing or withdrawing a sample container 4 in the form of an tube, which in this particular example, can be an Eppendorf tube or the like, into or from the chamber without substantially affecting and/or minimising the effect on the temperature or thermal uniformity of the plurality of sample containers undergoing thermal cycling.
  • the selectively openable port 2 may be typically sized such that, when in its open position, as best shown in FIG. 2 , the chamber 1 is not substantially open to the ambient atmosphere. Accordingly, any loss of heating or cooling air from the chamber 1 resulting from opening the port 2 is small or negligible so as to have minimal effect on the pre-existing sample containers, if any. Furthermore, the selectively openable port 2 is adapted to be in its open position for the minimum time necessary to allow the gripping device 3 to introduce or withdraw a sample container 4 into or from the chamber.
  • FIG. 3 is a plan view of the chamber 1 wherein the top cover 5 of the chamber 1 has been removed for clarity.
  • the port 2 is shown in its open position and the chamber 1 cooling ports 6 in their closed position.
  • FIG. 4 is a view similar to FIG. 3 but showing the port 2 in its closed position and the chamber 1 cooling ports 6 in their open position.
  • the gripping device 3 is typically sized and shaped so as to be in close fitting relationship with the aperture defined by the port 2 in its open position to minimise ingress/egress of air to/from the chamber, as best shown in FIG. 8 .
  • the gripping device 3 introduces or withdraws the sample container 4 in a substantially axial motion with respect to the sample container 4 . Accordingly, the gripping device 3 may engage with an edge of a sample container such as a tube or the like.
  • the gripping device may be sized and shaped such that the gripping device 3 has a close fitting relationship with an aperture defined by the port in the open position.
  • an outer periphery of the port 2 has a rubber seal and an outer diameter of the gripping device 3 is sized so as to provide an air-tight seal when the gripping device 3 is at least partially inserted therethrough.
  • the gripping device 3 may also include a flange, where in one particular example, the flange is configured to seal against the port 2 when the gripping device 3 is at least partially inserted therethrough, although it is not necessary that the flange provides a seal and can only engage with the port 2 . Additionally, the gripping device 3 may be substantially cylindrical in shape, where the port 2 has a circular opening to allow for insertion and withdrawal of the gripping device 3 .
  • gripping devices or the like for introducing or withdrawing sample containers may be employed. These include but are not limited to vacuum or magnetic devices which pull and/or push a sample container into the chamber by using different forces.
  • any sample containers which may be undergoing uniform thermal cycling in the chamber 1 may be held in apertures 7 disposed at the periphery of a rotatable carousel 8 rotatably mounted within the chamber 1 .
  • the chamber includes a rotatable carousel the chamber further includes drive means 9 for driving the rotatable carousel 8 thereby applying a centrifugal force to the sample containers during cycling for maintaining the reaction mixture at the base of the sample container 4 .
  • FIG. 5 shows a partly cut-away perspective front view of a device described herein, showing the gripping device 3 introducing a sample container 4 into the rotatable carousel 8 .
  • FIG. 6 is a view similar to FIG. 5 but showing the sample container 4 in the rotatable carousel 8 at the unloading position after having had a plurality of thermal cycles and ready for withdrawal.
  • FIG. 7 is a view similar to FIG. 6 but showing the gripping device 3 moving into the chamber 1 through the opened port 2 to withdraw the sample container 4 .
  • FIG. 8 is a view similar to FIG.
  • a PCR sample is loaded into a sample container 4 with an oil overlay and heated to 95° C. for 2 minutes on a hot plate to activate an enzyme and denaturing the sample.
  • the rotor is then temporarily stopped from rotation whilst the chamber is at temperatures of 40 to 60° C.
  • the selectively openable port is then opened for access to the rotor 8 and the sample container 4 is introduced by the gripping device 3 to the rotatable carousel 8 .
  • the gripping device 3 is withdrawn, the port 2 is closed and the rotatable carousel 8 is again spun at its predetermined speed.
  • the reaction occurring in the sample container 4 may also be continuously analyzed.
  • any existing sample containers which have had the requisite number of thermal cycles, can be withdrawn.
  • FIG. 12 An example process of thermal cycling is shown in FIG. 12 .
  • a selected sample container can be introduced to or withdrawn from the device (at step 22 ).
  • a method of thermal cycling can include the steps of: initiating thermal cycling in a plurality of sample containers, opening the selectively openable port 2 and introducing or withdrawing the sample container 4 to or from the chamber during thermal cycling without substantially affecting the temperature or thermal uniformity of the plurality of sample containers.
  • a method of thermal cycling can also include the steps of: initiating thermal cycling in a plurality of sample containers, optionally temporarily halting the thermal cycle and maintaining the temperature, opening the selectively openable port 2 and introducing or withdrawing a sample container 4 through the opened port 2 . The port 2 is then closed and the thermal cycle is continued (if temporarily halted), wherein the sample container 4 is introduced or withdrawn without substantially affecting the temperature or thermal uniformity of the plurality of sample containers.
  • a method of thermal cycling can include the steps of: initiating thermal cycling in a plurality of sample containers, optionally temporarily halting the thermal cycle and maintaining the temperature, stopping rotation of the carousel 8 and indexing either to a sample container requiring withdrawal or a vacant position on the carousel 8 for receiving a sample container 4 .
  • the selectively openable port 2 is then opened and a sample container 4 is introduced or withdrawn through the opened port, which is then closed.
  • Rotation of the rotatable carousel 8 is then continued, as is the thermal cycle if temporarily halted, wherein the sample container 4 is introduced or withdrawn without substantially affecting the temperature or thermal uniformity of the plurality of sample containers.
  • a flow chart of this particular example is shown in FIG. 13 .
  • a method of thermal cycling in a device where the device can include a plurality of sample containers supported on a rotatable carousel and being substantially uniformly thermally cycled in a chamber having a selectively openable port, where the rotatable carousel is rotated in the chamber.
  • the method can include the steps of optionally temporarily halting the thermal cycle and maintaining the temperature; stopping rotation of the carousel and indexing either to a sample container requiring withdrawal or a vacant position on the carousel for receiving a sample container; opening the selectively openable port; introducing or withdrawing one or more selected sample containers through the opened port; closing the port; continuing rotation of the carousel; and continuing the thermal cycle if temporarily halted, wherein the sample container is introduced or withdrawn without substantially affecting and/or minimising the effect on the temperature or thermal uniformity of the plurality of sample containers.
  • a method for performing thermal cycling in a device where the device includes a plurality of sample containers supported on a rotatable carousel and being substantially uniformly thermally cycled in a chamber having a selectively openable port, the rotatable carousel being rotated in the chamber.
  • the method can include the steps of: optionally temporarily halting the thermal cycle and maintaining the temperature; stopping rotation of the carousel and indexing either to a sample container requiring withdrawal or a vacant position on the carousel for receiving a sample container; opening the selectively openable port; introducing or withdrawing the sample container through the opened port; closing the port; continuing rotation of the carousel; and continuing the thermal cycle if temporarily halted, wherein the sample container is introduced or withdrawn without substantially affecting and/or minimising any effect on the temperature or thermal uniformity of the plurality of sample containers.
  • the methods described herein may include the pre-step of thermally pre-treating a sample contained in a sample container.
  • the sample may be thermally treated at 90° C. for 2 minutes, and the sample may also include an oil overlay for reducing evaporation.
  • a sample container may be introduced or withdrawn whilst the chamber is at any desired stage of a thermal cycling reaction.
  • a sample container may be introduced or withdrawn whilst the chamber is at a temperature of between about 40 to 60° C.
  • the number of thermal cycles may be determined on a case by case basis, but by way of example, may be between about 20 and 50.
  • reactions occurring in the sample containers may be continuously analyzed during thermal cycling and that such analysis is not compromised by the employment of devices and methods as described herein.
  • the sample container may be at least partially elevated during withdrawal from the chamber by any suitable means.
  • sample containers means any form of container adapted to include, hold, etc, a single sample.
  • the sample container is typically a tube or the like, such as an Eppendorf tube.
  • Sample containers may be composed of any suitable materials, for example glass and/or plastic.
  • the tube will typically be suitable to enable efficient thermal transfer within the container and may have an optical clarity sufficient to enable real-time analysis of the sample to take place.
  • the sample containers may be of any suitable size as will be appreciated by those skilled in the art.
  • the opening port of the chamber is configured to collaborate with the gripping device for loading the tubes into and out of the chamber and may be adapted to be of a similar size to the maximum diameter of the sample containers.
  • a plurality of sample containers may be introduced to or withdrawn from the chamber simultaneously.
  • Such sample containers may be physically connected by any suitable means.
  • a plurality of sample containers may form part of a clip.
  • a connected plurality of sample containers may include any number of individual sample containers, such as 2, 3, 4, 5, 6, 8 or 10.
  • the size of the selectively openable port is such that, according to one example, the effect on the temperature or thermal uniformity of the plurality of samples within the chamber is minimised.
  • Example sizes of the port can include 20 to 30 mm of opening.
  • the time taken to insert/withdraw selected sample containers may be anywhere between one second to one minute.
  • an element means one element or more than one element.

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  • Genetics & Genomics (AREA)
  • Clinical Laboratory Science (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Automatic Analysis And Handling Materials Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
US12/675,659 2007-08-28 2008-08-28 Thermal cycling device with selectively openable sample port Expired - Fee Related US9352320B2 (en)

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AU2007904654A AU2007904654A0 (en) 2007-08-28 Improved thermal cycling device
AU2007904654 2007-08-28
PCT/AU2008/001272 WO2009026639A1 (en) 2007-08-28 2008-08-28 Thermal cycling device with selectively openable sample port

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Cited By (2)

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Publication number Priority date Publication date Assignee Title
US10288633B2 (en) 2015-06-26 2019-05-14 Abbott Laboratories Reaction vessel moving member for moving reaction vessels from a processing track to a rotating device in a diagnostic analyzer
US11733257B2 (en) 2015-06-26 2023-08-22 Abbott Laboratories Reaction vessel moving member for moving reaction vessels from a processing track to a rotating device in a diagnostic analzyer

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US20110008881A1 (en) 2011-01-13
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WO2009026639A1 (en) 2009-03-05
EP2190566A1 (en) 2010-06-02
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AU2008291699B2 (en) 2012-04-26
EP2190566B1 (en) 2012-10-03

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