US7816529B2 - Pyrimidines useful as modulators of voltage-gated ion channels - Google Patents

Pyrimidines useful as modulators of voltage-gated ion channels Download PDF

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US7816529B2
US7816529B2 US10/884,865 US88486504A US7816529B2 US 7816529 B2 US7816529 B2 US 7816529B2 US 88486504 A US88486504 A US 88486504A US 7816529 B2 US7816529 B2 US 7816529B2
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ring
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Dean Mitchell Wilson
Esther Martinborough
Timothy Donald Neubert
Andreas Peter Termin
Jesus E. Gonzalez, III
Nicole Zimmerman
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Vertex Pharmaceuticals Inc
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Definitions

  • the present invention relates to compounds useful as inhibitors of voltage-gated sodium channels and calcium channels.
  • the invention also provides pharmaceutically acceptable compositions comprising the compounds of the invention and methods of using the compositions in the treatment of various disorders.
  • Na channels are central to the generation of action potentials in all excitable cells such as neurons and myocytes. They play key roles in excitable tissue including brain, smooth muscles of the gastrointestinal tract, skeletal muscle, the peripheral nervous system, spinal cord and airway. As such they play key roles in a variety of disease states such as epilepsy (See, Moulard, B. and D. Bertrand (2002) “Epilepsy and sodium channel blockers” Expert Opin. Ther. Patents 12(1): 85-91)), pain (See, Waxman, S. G., S. Dib-Hajj, et al. (1999) “Sodium channels and pain” Proc Natl Acad Sci USA 96(14): 7635-9 and Waxman, S. G., T. R.
  • Voltage gated Na channels comprise a gene family consisting of 9 different subtypes (NaV1.1-NaV1.9). As shown in Table 1, these subtypes show tissue specific localization and functional differences (See, Goldin, A. L. (2001) “Resurgence of sodium channel research” Annu Rev Physiol 63: 871-94). Three members of the gene family (NaV1.8, 1.9, 1.5) are resistant to block by the well-known Na channel blocker TTX, demonstrating subtype specificity within this gene family. Mutational analysis has identified glutamate 387 as a critical residue for TTX binding (See, Noda, M., H. Suzuki, et al. (1989) “A single point mutation confers tetrodotoxin and saxitoxin insensitivity on the sodium channel II” FEBS Lett 259(1): 213-6).
  • CNS central nervous system
  • PNS peripheral nervous sytem
  • DRG dorsal root ganglion
  • TG Trigeminal ganglion
  • NaVs voltage-gated sodium channels
  • Antagonists of NaV channels can attenuate these pain signals and are useful for treating a variety of pain conditions, including but not limited to acute, chronic, inflammatory, and neuropathic pain.
  • Known NaV antagonists such as TrX, lidocaine (See, Mao, J. and L. L. Chen (2000) “Systemic lidocaine for neuropathic pain relief” Pain 87(1): 7-17.) bupivacaine, phenytoin (See Jensen, T. S.
  • Hyperalgesia extreme sensitivity to something painful
  • Voltage sensitive sodium channels activation is critical for the generation and propagation of neuronal action potentials.
  • modulation of NaV currents is an endogenous mechanism used to control neuronal excitability (See Goldin, A. L. (2001) “Resurgence of sodium channel research” Annu Rev Physiol 63: 871-94.).
  • DRG dorsal root ganglion
  • TTX-resistant current is insensitive to micromolar concentrations of tetrodotoxin, and displays slow activation and inactivation kinetics and a more depolarized activation threshold when compared to other voltage-gated sodium channels.
  • TTX-resistant sodium currents are primarily restricted to a subpopulation of sensory neurons likely to be involved in nociception. Specifically, TTX-resistant sodium currents are expressed almost exclusively in neurons that have a small cell-body diameter; and give rise to small-diameter slow-conducting axons and that are responsive to capsaicin.
  • a large body of experimental evidence demonstrates that TTX-resistant sodium channels are expressed on C-fibers and are important in the transmission of nociceptive information to the spinal cord.
  • Intrathecal administration of antisense oligo-deoxynucleotides targeting a unique region of the TTX-resistant sodium channel (NaV1.8) resulted in a significant reduction in PGE 2 -induced hyperalgesia (See Khasar, S. G., M. S. Gold, et al. (1998) “A tetrodotoxin-resistant sodium current mediates inflammatory pain in the rat” Neurosci Lett 256(1): 17-20). More recently, a knockout mouse line was generated by Wood and colleagues, which lacks functional NaV1.8. The mutation has an analgesic effect in tests assessing the animal's response to the inflammatory agent carrageenan (ee, Akopian, A. N., V.
  • carrageenan ee, Akopian, A. N., V.
  • NaV1.8 protein is upregulated along uninjured C-fibers adjacent to the nerve injury.
  • Antisense treatment prevents the redistribution of NaV1.8 along the nerve and reverses neuropathic pain.
  • expression of NaV1.8 and NaV1.9 are greatly reduced whereas expression of the TTX sensitive subunit NaV1.3 is 5-10 fold upregulated (See, Dib-Hajj, S. D., J. Fjell, et al. (1999) “Plasticity of sodium channel expression in DRG neurons in the chronic constriction injury model of neuropathic pain.” Pain 83(3): 591-600.)
  • the timecourse of the increase in NaV1.3 parallels the appearance of allodynia in animal models subsequent to nerve injury.
  • the biophysics of the NaV1.3 channel is distinctive in that it shows very fast repriming after inactivation following an action potential.
  • NaV1.3 is expressed in the central and peripheral systems of man.
  • NaV1.9 is similar to NaV1.8 as it is selectively localized to small sensory neurons of the dorsal root ganglion and trigeminal ganglion (See Fang, X., L. Djouhri, et al. (2002).
  • the resting membrane potential of NaV1.9 expressing cells is in the ⁇ 55 to ⁇ 50 mV range compared to ⁇ 65 mV for most other peripheral and central neurons.
  • This persistent depolarization is in large part due to the sustained low-level activation of NaV1.9 channels. This depolarization allows the neurons to more easily reach the threshold for firing action potentials in response to nociceptive stimuli.
  • Compounds that block the NaV1.9 channel may play an important role in establishing the set point for detection of painful stimuli. In chronic pain states, nerve and nerve ending can become swollen and hypersensitive exhibiting high frequency action potential firing with mild or even no stimulation.
  • NaV1.8 and NaV1.7 are also expressed in dorsal root ganglion neurons and contribute to the small TTX sensitive component seen in these cells.
  • NaV1.7 in particular my therefore be a potential pain target in addition to it's role in neuroendocrine excitability (See, Klugbauer, N., L. Lacinova, et al. (1995) “Structure and functional expression of a new member of the tetrodotoxin-sensitive voltage-activated sodium channel family from human neuroendocrine cells” Embo J 14(6): 1084-90).
  • NaV1.1 See, Sugawara, T., E. Mazaki-Miyazaki, et al. (2001) “Nav1.1 mutations cause febrile seizures associated with afebrile partial seizures.” Neurology 57(4): 703-5.
  • NaV1.2 See. Sugawara, T., Y. Tsurubuchi, et al. (2001) “A missense mutation of the Na+ channel alpha II subunit gene Na(v)1.2 in a patient with febrile and afebrile seizures causes channel dysfunction” Proc Natl Acad Sci USA 98(11): 6384-9) have been linked to epilepsy conditions including febrile seizures.
  • Antagonists for NaV1.5 have been developed and used to treat cardiac arrhythmias.
  • a gene defect in NaV1.5 that produces a larger noninactivating component to the current has been linked to long QT in man and the orally available local anesthetic mexilitine has been used to treat this condition (See, Wang, D. W., K. Yazawa, et al. (1997) “Pharmacological targeting of long QT mutant sodium channels.” J Clin Invest 99(7): 1714-20).
  • Na channel blockers are currently used or being tested in the clinic to treat epilepsy (See, Moulard, B. and D. Bertrand (2002) “Epilepsy and sodium channel blockers” Expert Opin. Ther. Patents 12(1): 85-91.); acute (See, Wiffen, P., S. Collins, et al. (2000) “Anticonvulsant drugs for acute and chronic pain” Cochrane Database Syst Rev 3), chronic (See, Wiffen, P., S. Collins, et al. (2000) “Anticonvulsant drugs for acute and chronic pain” Cochrane Database Syst Rev 3, and Guay, D. R.
  • Narasimhan (1997) “Sodium channels and therapy of central nervous system diseases” Adv Pharmacol 39: 47-98) and as anesthetics (See, Strichartz, G. R., Z. Zhou, et al. (2002) “Therapeutic concentrations of local anaesthetics unveil the potential role of sodium channels in neuropathic pain.” Novartis Found Symp 241: 189-201)
  • Calcium channels are membrane-spanning, multi-subunit proteins that allow Ca entry from the external milieu and concurrent depolarization of the cell's membrane potential.
  • calcium channels have been classified based on their functional characteristics such as low voltage or high voltage activated and their kinetics (L, T, N, P, Q).
  • L, T, N, P, Q kinetics
  • the ability to clone and express the calcium channel subunits has lead to an increased understanding of the channel composition that produces these functional responses.
  • the ⁇ 1 is the subunit containing the channel pore and voltage sensor
  • ⁇ 2 is primarily extracellular and is disulfide linked to the transmembrane ⁇ subunit
  • ⁇ is nonglycosylated subunit found bound to the cytoplasmic region of the ⁇ 1 subunit of the Ca channel.
  • the various calcium channel subtypes are believed to made up of the following specific subunits:
  • Ca influx into the presynaptic terminal of a nerve process binds to and produces a cascade of protein-protein interactions (syntaxin 1A, SNAP-25 and synaptotagmin) that ultimately ends with the fusion of a synaptic vesical and release of the neurotransmitter packet.
  • Blockade of the presynaptic calcium channels reduces the influx of Ca and produces a cubic X 3 decrease in neurotransmitter release.
  • the N type Ca channel (CaV2.2) is highly expressed at the presynaptic nerve terminals of the dorsal root ganglion as it forms a synapse with the dorsal horn neurons in lamina I and II. These neurons in turn have large numbers of N type Ca channels at their presynaptic terminals as they synapse onto second and third order neurons. This pathway is very important in relaying pain information to the brain.
  • Acute pain serves an important protective function in keeping the organism safe from stimuli that may produce tissue damage. Severe thermal, mechanical, or chemical inputs have the potential to cause severe damage to the organism if unheeded.
  • Acute pain serves to quickly remove the individual from the damaging environment. Acute pain by its very nature generally is short lasting and intense. Inflammatory pain on the other hand may last for much longer periods of time and it's intensity is more graded. Inflammation may occur for many reasons including tissue damage, autoimmune response, and pathogen invasion.
  • Inflammatory pain is mediated by an “inflammatory soup” that consists of substance P, histamines, acid, prostaglandin, bradykinin, CGRP, cytokines, ATP, and neurotransmitter release.
  • the third class of pain is neuropathic and involves nerve damage that results in reorganization of neuronal proteins and circuits yielding a pathologic “sensitized” state that can produce chronic pain lasting for years. This type of pain provides no adaptive benefit and is particularly difficult to treat with existing therapies.
  • Pain, particularly neuropathic and intractable pain is a large unmet medical need. Millions of individuals suffer from severe pain that is not well controlled by current therapeutics.
  • the current drugs used to treat pain include NSAIDS, COX2 inhibitors, opioids, tricyclic antidepressants, and anticonvulsants.
  • Neuropathic pain has been particularly difficult to treat as it does not respond well to opiods until high doses are reached.
  • Gabapentin is currently the favored therapeutic for the treatment of neuropathic pain although it works in only 60% of patients where it shows modest efficacy. The drug is however very safe and side effects are generally tolerable although sedation is an issue at higher doses.
  • the N type Ca channel has been validated in man by intrathecal infusion of the toxin Ziconotide for the treatment of intractable pain, cancer pain, opioid resistant pain, and neuropathic and severe pain.
  • the toxin has an 85% success rate for the treatment of pain in humans with a greater potency than morphine.
  • An orally available N type Ca channel antagonist would garner a much larger share of the pain market.
  • Ziconotide causes mast cell degranulation and produces dose-dependent central side effects. These include dizziness, nystagmus, agitation, and dysmetria. There is also orthostatic hypotension in some patients at high doses. The primary risk for this target involves the CNS side-effects seen with Ziconotide at high dosing.
  • R 1 , R 2 , R z , R 4 , and ring A are as defined herein.
  • These compounds and pharmaceutically acceptable compositions are useful for treating or lessening the severity of a variety of diseases, disorders, or conditions, including, but not limited to, acute, chronic, neuropathic, or inflammatory pain, arthritis, migrane, cluster headaches, trigeminal neuralgia, herpetic neuralgia, general neuralgias, epilepsy or epilepsy conditions, neurodegenerative disorders, psychiatric disorders such as anxiety and depression, myotonia, arrythmia, movement disorders, neuroendocrine disorders, ataxia, multiple sclerosis, irritable bowel syndrome, and incontinence.
  • diseases, disorders, or conditions including, but not limited to, acute, chronic, neuropathic, or inflammatory pain, arthritis, migrane, cluster headaches, trigeminal neuralgia, herpetic neuralgia, general neuralgias, epilepsy or epilepsy conditions, neurodegenerative disorders, psychiatric disorders such as anxiety and depression, myotonia, arrythmia
  • the present invention relates to compounds of formula I useful as inhibitors of voltage-gated sodium channels:
  • R Z is —C(O)R 3 , —C(O)OR 3 , or R Z1 ;
  • R Z1 is —C(O)N(R′) 2 , —SO 2 R′, —SO 2 NHR′, —NHSO 2 R′, —P(O)(OR′) 2 , —C(O)N(CN)R′, an optionally substituted 5-membered heteroaryl ring having 1-4 heteroatoms selected from O, S, or N, or an optionally substituted pyran-4-one-yl;
  • R 1 and R 2 are each independently hydrogen, or an optionally substituted group selected from C 1-6 aliphatic, a 5-6 membered aryl ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur; or R 1 and R 2 , taken together with the nitrogen atom to which they are bound, form an optionally substituted 3-8 membered heterocyclyl or heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur, wherein R 1 , R 2 , or any ring formed by R 1 and R 2 taken together, are each independently optionally substituted at one or more carbon atoms with 0-4 occurrences of —R 5 , and at one or more substitutable nitrogen atoms with —R 6 ;
  • each occurrence of R 3 , R 4 , R 5 , and R 7 is independently Q-R X ; wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN, provided that when R Z is —OR 3 , then Q-R X is bonded to the oxygen atom through a carbon atom;
  • each occurrence of R 6 or R 8 is independently R′, —COR′, —CO 2 (C 1-6 aliphatic), —CON(R′) 2 , or —SO 2 R′,
  • R Z is R 3 , then R 3 is bonded to the carbon atom of the carbonyl group through an atom other than oxygen, preferably, through a carbon atom.
  • R 1 and R 2 taken together cannot be N-morpholino, N-pyrrolidinyl, or optionally substituted piperazinyl;
  • R 3 when R 3 is CH 3 or optionally substituted phenyl
  • R 1 is hydrogen
  • R 2 is optionally substituted phenyl, methyl, ethyl, COR′, NR′, or CONHR′
  • R 4 is ⁇ S, Me, SMe, or SCH 2 CO 2 Me, SCH 2 CN, then ring A is not unsubstituted phenyl or 4-Cl-phenyl;
  • ring A is not N-pyrrolidinyl, piperazin-1-yl, N-morpholinyl, or 1-piperidinyl;
  • R 3 when R 3 is N(R′) 2 , R 1 is hydrogen, R 2 is 3-,5-Cl-phenyl, 4-Cl-phenyl, methyl, optionally substituted cyclohexyl, 3-Cl, 4-OMe-benzyl, 4-Ac-phenyl, ethyl, i-propyl, 4-OEt-phenyl, 4-OMe-phenyl, benzyl, or (CH 2 ) 2 OR, and R 4 is CH 3 , hydrogen, or SMe, then ring A is not unsubstituted phenyl, piperidinyl, optionally substituted piperazinyl, morpholinyl, optionally substituted pyrrolidinyl, 5,8-dihydro-1,7-naphthyridin-7(6H)-yl, or 5,6-dihydro-8-imidazo[1,2-a]pyrazin-7-yl;
  • R 3 when R 3 is —CH ⁇ CHN(CH 3 ) 2 , CH 3 , —(CH 2 ) 2 —N-morpholino, —(CH 2 ) 2 —OMe, —(CH 2 ) 2 —OH, —CH 2 OMe, n-butyl, pyridin-2-ylmethyl, pyridin-2-yl, pyrimidin-5-yl, CH 2 SO 2 Me, —(CH 2 ) 2 —NMe 2 , —(CH 2 ) 2 —N-(4-methylpiperazyl), —(CH 2 ) 2 —NH-pyridin-3-yl, —(CH 2 ) 2 —NH—CH 2 -pyridin-3-yl, 1-methyl-1H-imidazol-2-yl, 5-amino-1,2-dimethyl-1H-imidazol-4-yl, 4-(dimethylamino)phenyl, 3,4-(methylenedioxy)pheny
  • R 1 when R 1 is hydrogen and R 2 is hydrogen or 4,6-dimethylpyrimidin-2-yl, ring A is optionally substituted phenyl, R 3 is Me or unsubstituted phenyl, then R 4 is not SMe, ⁇ S, Me, or unsubstituted phenyl;
  • R 1 is hydrogen and R 2 is optionally substituted benzyl, then R 3 is not 3,4,5-trimethoxyphenyl;
  • ring A is (2-fluorophenylmethyl)-1H-pyrazolo[3,4-b]pyridin-3-yl, R 3 is ethyl or 2-ethoxyethyl, then R 4 is not hydrogen;
  • ring A is 4-(4′-morpholinyl)-5-methyl-2-phenylthieno[2,3-d]pyrimidin-6-yl, 4-amino-5-methyl-2-phenylthieno[2,3-d]pyrimidin-6-yl, 4-(4-(4-fluorophenyl)-piperazyl)-5-methyl-2-phenylthieno[2,3-d]pyrimidin-6-yl, 4-(4,6-dimethyl-pyrimidin-2-yl)amino-5-methyl-2-phenylthieno[2,3-d]pyrimidin-6-yl, 4-(N-pyrrolidinyl)-5-methyl-2-phenylthieno[2,3-d]pyrimidin-6-yl, or unsubstituted phenyl, R 3 is methyl, then R 4 is not methyl or SMe;
  • ring A is not N-pyrrolidinyl, 3,4-dimethoxyphenyl, 2-methoxyphenyl, thiophen-3-yl, or thiophen-2-yl.
  • N(R ′ ) 2 is not NH 2 or NH—C( ⁇ NH)NH 2 ;
  • R 1 is hydrogen, methyl, or ethyl
  • R 2 is —(CH 2 ) 2 —OH, —(CH 2 ) 2 —OAc, 3,5-dichlorophenyl, or benzyl
  • R 4 is hydrogen or methyl
  • ring A is unsubstituted phenyl, then N(R′) 2 is not NH 2 , NHNH 2 , NHMe, NH(CH 2 ) 2 —OH, or NH-benzyl;
  • N(R ′ ) 2 is NH 2 , NH-(optionally substituted phenyl), N(optionally substituted C1-6 aliphatic)(optionally substituted phenyl), or NH(6,7,8,9-tetrahydro-5H-benzocyclohepten-6-yl), R 4 is hydrogen, then ring A is not 1-imidazolyl, 1-piperidyl, unsubstituted phenyl, optionally substituted 2-oxo-imidazolidin-1-yl or 1-[(2-fluorophenyl)methyl]-1H-indazol-3-yl;
  • R 1 when R 1 is hydrogen, R 2 is hydrogen or C 1-4 aliphatic, N(R ′ ) 2 is NH(C1-4 aliphatic) or N(C1-4 aliphatic) 2 , R 4 is hydrogen, then ring A is not N-piperidyl or optionally substituted N-piperazyl;
  • ring A is not 2-formyl-pyrrolin-1-yl, optionally substituted hydroxymethyl-pyrrolidin-1-yl, hydroxypiperidinyl, or hydroxymethylpiperidinyl;
  • ring A is not optionally substituted N-piperazyl, 3,4-dihydro-(1H)-isoquinolin-2-yl, 5,6-dihydroimidazo[1,2-a]pyrazin-7(8H)-yl, or 6,7-dihydrothieno[3,2-c]pyridin-5(4H)-2-yl;
  • R 1 when R 1 is hydrogen, R 2 is optionally substituted benzyl, R 4 is hydrogen, N(R′) 2 is NHCH 2 (pyridin-2-yl), then ring A is not 3-(hydroxymethyl)2(1H)-isoquinolinyl; and o) when R 1 is hydrogen, R 2 is (aryl or heteroaryl) substituted C 1 - 4 aliphatic, R 4 is hydrogen, then ring A is not 3,4-dihydro-(1H)-isoquinolin-2-yl, 5,6-dihydroimidazo[1,2-a]pyrazin-7(8H)-yl, 5,8-dihydro-1,7-napthyridin-7(6H)-yl, 5,7-dihydro-6H-pyrrolo[3,4-b]pyridin-6-yl, 2,3-dihydro-1H-indol-1-yl, 4,5,6,7-tetrahydro-isoxazolo
  • R 1 and R 2 taken together is 4-(2-naphthalenylsulfonyl)-1-piperazinyl
  • ring A is 4-(2-naphthalenylsulfonyl)-1-piperazinyl or 4-(2-naphthalenylsulfonyl)amino-piperidinyl and R 4 is hydrogen
  • R 3 is not NH—O-(tetrahydro-2H-pyran-2-yl) or NHOH.
  • R Z is R Z1 as generally described above and herein:
  • R Z1 when R Z1 is tetrazolyl, R 1 is hydrogen, R 2 is hydrogen or optionally substituted phenyl, R 4 is hydrogen, then ring A is not unsubstituted 1-pyrrolidinyl, 1-piperidyl, N-morpholinyl, 1-azepanyl, or phenyl.
  • R Z is R Z1 as generally described above and herein:
  • ring A is not 1-[(2-fluorophenyl)methyl]-1H-pyrazolo[3,4-b]pyridin-3-yl or unsubstituted phenyl.
  • R Z is R Z1 as generally described above and herein:
  • R 3 is bonded to the carbon atom of the carbonyl group through an atom other than oxygen or nitrogen.
  • R Z is —C(O)R 3 , as described generally above and in subsets herein, for R 4 , Q is not O or S, when R X is optionally substituted furyl, or thiophene.
  • R Z is —C(O)R 3 , as described generally above and in subsets herein, when R 1 is hydrogen, R 2 is a group other than NR′.
  • compounds of the invention may optionally be substituted with one or more substituents, such as are illustrated generally above, or as exemplified by particular classes, subclasses, and species of the invention. It will be appreciated that the phrase “optionally substituted” is used interchangeably with the phrase “substituted or unsubstituted.” In general, the term “substituted”, whether preceded by the term “optionally” or not, refers to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent.
  • an optionally substituted group may have a substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position.
  • Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds.
  • the term “stable”, as used herein, refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and preferably their recovery, purification, and use for one or more of the purposes disclosed herein.
  • a stable compound or chemically feasible compound is one that is not substantially altered when kept at a temperature of 40° C. or less, in the absence of moisture or other chemically reactive conditions, for at least a week.
  • aliphatic or “aliphatic group”, as used herein, means a straight-chain (i.e., unbranched) or branched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation, or a monocyclic hydrocarbon or bicyclic hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic (also referred to herein as “carbocycle” “cycloaliphatic” or “cycloalkyl”), that has a single point of attachment to the rest of the molecule. Unless otherwise specified, aliphatic groups contain 1-20 aliphatic carbon atoms.
  • aliphatic groups contain 1-10 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-8 aliphatic carbon atoms. In still other embodiments, aliphatic groups contain 1-6 aliphatic carbon atoms, and in yet other embodiments aliphatic groups contain 1-4 aliphatic carbon atoms.
  • cycloaliphatic refers to a monocyclic C 3 -C 8 hydrocarbon or bicyclic C 8 -C 12 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule wherein any individual ring in said bicyclic ring system has 3-7 members.
  • Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, alkynyl groups and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl or (cycloalkyl)alkenyl.
  • heteroaliphatic means aliphatic groups wherein one or two carbon atoms are independently replaced by one or more of oxygen, sulfur, nitrogen, phosphorus, or silicon. Heteroaliphatic groups may be substituted or unsubstituted, branched or unbranched, cyclic or acyclic, and include “heterocycle”, “heterocyclyl”, “heterocycloaliphatic”, or “heterocyclic” groups.
  • heterocycle means non-aromatic, monocyclic, bicyclic, or tricyclic ring systems in which one or more ring members is an independently selected heteroatom.
  • the “heterocycle”, “heterocyclyl”, “heterocycloaliphatic”, or “heterocyclic” group has three to fourteen ring members in which one or more ring members is a heteroatom independently selected from oxygen, sulfur, nitrogen, or phosphorus, and each ring in the system contains 3 to 7 ring members.
  • heteroatom means one or more of oxygen, sulfur, nitrogen, phosphorus, or silicon (including, any oxidized form of nitrogen, sulfur, phosphorus, or silicon; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3,4-dihydro-2H-pyrrolyl), NH (as in pyrrolidinyl) or NR + (as in N-substituted pyrrolidinyl)).
  • unsaturated means that a moiety has one or more units of unsaturation.
  • alkoxy refers to an alkyl group, as previously defined, attached to the principal carbon chain through an oxygen (“alkoxy”) or sulfur (“thioalkyl”) atom.
  • aryl used alone or as part of a larger moiety as in “aralkyl”, “aralkoxy”, or “aryloxyalkyl”, refers to monocyclic, bicyclic, and tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members.
  • aryl may be used interchangeably with the term “aryl ring”.
  • aryl also refers to heteroaryl ring systems as defined hereinbelow.
  • heteroaryl used alone or as part of a larger moiety as in “heteroaralkyl” or “heteroarylalkoxy”, refers to monocyclic, bicyclic, and tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic, at least one ring in the system contains one or more heteroatoms, and wherein each ring in the system contains 3 to 7 ring members.
  • heteroaryl may be used interchangeably with the term “heteroaryl ring” or the term “heteroaromatic”.
  • An aryl (including aralkyl, aralkoxy, aryloxyalkyl and the like) or heteroaryl (including heteroaralkyl and heteroarylalkoxy and the like) group may contain one or more substituents. Suitable substituents on the unsaturated carbon atom of an aryl or heteroaryl group are selected from halogen; —R o ; —OR o ; —SR o; 1,2-methylene-dioxy; 1,2-ethylenedioxy; phenyl (Ph) optionally substituted with R o ; —O(Ph) optionally substituted with R o ; —(CH 2 ) 1-2 (Ph), optionally substituted with R o ; —CH ⁇ CH(Ph), optionally substituted with R o ; —NO 2 ; —CN; —N(R o ) 2 ; —NR o C(O)R o ; —NR o C(O)N(R o
  • Optional substituents on the aliphatic group of R o are selected from NH 2 , NH(C 1-4 aliphatic), N(C 1-4 aliphatic) 2 , halogen, C 1-4 aliphatic, OH, O(C 1-4 aliphatic), NO 2 , CN, CO 2 H, CO 2 (C 1-4 aliphatic), O(haloC 1-4 aliphatic), or haloC 1-4 aliphatic, wherein each of the foregoing C 1-4 aliphatic groups of R o is unsubstituted.
  • An aliphatic or heteroaliphatic group, or a non-aromatic heterocyclic ring may contain one or more substituents. Suitable substituents on the saturated carbon of an aliphatic or heteroaliphatic group, or of a non-aromatic heterocyclic ring are selected from those listed above for the unsaturated carbon of an aryl or heteroaryl group and additionally include the following: ⁇ O, ⁇ S, ⁇ NNHR*, ⁇ NN(R*) 2 , ⁇ NNHC(O)R*, ⁇ NNHCO 2 (alkyl), ⁇ NNHSO 2 (alkyl), or ⁇ NR*, where each R* is independently selected from hydrogen or an optionally substituted C 1-6 aliphatic.
  • Optional substituents on the aliphatic group of R* are selected from NH 2 , NH(C 1-4 aliphatic), N(C 1-4 aliphatic) 2 , halogen, C 1-4 aliphatic, OH, O(C 1-4 aliphatic), NO 2 , CN, CO 2 H, CO 2 (C 1-4 aliphatic), O(halo C 1-4 aliphatic), or halo(C 1-4 aliphatic), wherein each of the foregoing C 1-4 aliphatic groups of R* is unsubstituted.
  • Optional substituents on the nitrogen of a non-aromatic heterocyclic ring are selected from —R + , —N(R + ) 2 , —C(O)R + , —CO 2 R + , —C(O)C(O)R + , —C(O)CH 2 C(O)R + , —SO 2 R + , —SO 2 N(R + ) 2 , —C( ⁇ S)N(R + ) 2 , —C( ⁇ NH)—N(R + ) 2 , or —NR + SO 2 R + ; wherein R + is hydrogen, an optionally substituted C 1-6 aliphatic, optionally substituted phenyl, optionally substituted —O(Ph), optionally substituted —CH 2 (Ph), optionally substituted —(CH 2 ) 1-2 (Ph); optionally substituted —CH ⁇ CH(Ph); or an unsubstituted 5-6 membered heteroaryl or hetero
  • Optional substituents on the aliphatic group or the phenyl ring of R + are selected from NH 2 , NH(C 1-4 aliphatic), N(C 1-4 aliphatic) 2 , halogen, C 1-4 aliphatic, OH, O(C 1-4 aliphatic), NO 2 , CN, CO 2 H, CO 2 (C 1-4 aliphatic), O(halo C 1-4 aliphatic), or halo(C 1-4 aliphatic), wherein each of the foregoing C 1-4 aliphatic groups of R + is unsubstituted.
  • alkylidene chain refers to a straight or branched carbon chain that may be fully saturated or have one or more units of unsaturation and has two points of attachment to the rest of the molecule.
  • two independent occurrences of R o are taken together together with the atom(s) to which each variable is bound to form a 3-8-membered cycloalkyl, heterocyclyl, aryl, or heteroaryl ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, (Z) and (E) double bond isomers, and (Z) and (E) conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention. Unless otherwise stated, all tautomeric forms of the compounds of the invention are within the scope of the invention.
  • structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
  • compounds having the present structures except for the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13 C- or 14 C-enriched carbon are within the scope of this invention.
  • Such compounds are useful, for example, as analytical tools or probes in biological assays.
  • R′ is hydrogen
  • R′ is independently selected from an optionally substituted group selected from C 1-8 aliphatic, C 6-10 aryl, a heteroaryl ring having 5-10 ring atoms, or a heterocyclyl ring having 3-10 ring atoms.
  • R′ is an optionally substituted C 1-8 aliphatic group.
  • R′ is C 1-4 aliphatic group optionally substituted with halo, OH, COOH, CN, —OC 1-4 alkyl.
  • R′ is C 1-4 aliphatic group optionally substituted with a 5-6 membered heterocyclic ring containing optional substituents. Examples of such heterocyclic ring includes, e.g., tetrahydrofuranyl, pyranyl, piperidinyl, and piperazinyl.
  • R′ is C 1-4 aliphatic group optionally substituted with an aryl group containing optional substituents.
  • R′ is an optionally substituted C 6-10 aryl group.
  • Suitable aryl groups include phenyl and napthyl.
  • R′ is an optionally substituted heteroaryl ring having 5-10 ring atoms.
  • Suitable heteroaryl rings include 5-membered heteroaryl rings such as, e.g., pyrrolyl, thienyl, and thiazolyl.
  • R′ is an optionally substituted heterocyclyl ring having 3-10 ring atoms.
  • Such rings include, e.g., tetrahydrofuranyl, pyranyl, piperidinyl, and piperazinyl.
  • two occurrences of R′ taken together with the atom(s) to which they are bound form a 5-8 membered cycloalkyl, heterocyclyl, aryl, or heteroaryl ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • two occurrences of R′ taken together with the atom(s) to which they are bound form a 5-8 membered cycloalkyl ring.
  • two occurrences of R′ taken together with the atom(s) to which they are bound form a 5-8 membered heterocyclyl ring.
  • two occurrences of R′ taken together with the atom(s) to which they are bound form a 5-8 membered heterocyclyl ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • two occurrences of R′ taken together with the atom(s) to which they are bound form an aryl ring or they form a 5-8 membered having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • R 1 and R 2 are each independently hydrogen, or an optionally substituted group selected from C 1-6 aliphatic, a 5-6 membered aryl ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur; or R 1 and R 2 , taken together with the nitrogen atom to which they are bound, form an optionally substituted 3-8 membered heterocyclyl or heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur, wherein R 1 , R 2 , or any ring formed by R 1 and R 2 taken together, are each independently optionally substituted at one or more carbon atoms with 0-4 occurrences of —R 5 , and at one or more substitutable nitrogen atoms with —R 6 .
  • neither R 1 nor R 2 is hydrogen.
  • R 1 and R 2 are each independently an optionally substituted C 1-6 aliphatic group.
  • neither R 1 nor R 2 is hydrogen, and R 1 and R 2 are each independently selected from a 5- or 6-membered aryl ring having 0-5 heteroatoms independently selected from N, O, or S; a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from N, O, or S; or an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • both R 1 and R 2 are an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • one of R 1 and R 2 is an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • R 1 and R 2 groups are optionally substituted methyl, ethyl, cyclopropyl, n-propyl, propenyl, cyclobutyl, (CO)OCH 2 CH 3 , (CH 2 ) 2 OCH 3 , CH 2 (CO)OCH 2 CH 3 , CH 2 (CO)OCH 3 , CH(CH 3 )CH 2 CH 3 , or t-butyl, or n-butyl. More preferred R 1 and R 2 groups include those shown below in Table 2.
  • R 1 and R 2 are both C 1-4 aliphatic or R 1 and R 2 taken together form a 5-6 membered heterocyclic ring.
  • Preferred R 1 and R 2 include methyl, ethyl, or propyl; or R 1 and R 2 , taken together form an optionally substiuted 1-pyrrolidinyl or 1-piperidinyl.
  • R 1 and R 2 both are simultaneously methyl or ethyl.
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 3-6 membered heterocyclic ring having up to 2 heteroatoms.
  • Preferred R 1 and R 2 include methyl, ethyl, propyl; or R 1 and R 2 , taken together form an optionally substituted 1-azetidinyl, 1-pyrrolidinyl, 1-piperidinyl, or 1-piperazinyl.:
  • R 1 and R 2 both are methyl or ethyl, or R 1 and R 2 , taken together form a 1-pyrrolidinyl ring.
  • R 1 and R 2 both simultaneously are methyl or ethyl.
  • R 1 and R 2 are both simultaneously C 1-4 alphatic.
  • Preferred R 1 and R 2 include methyl, ethyl, or propyl.
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 4-6 membered heterocyclic ring having up to 2 nitrogen heteroatoms.
  • Preferred R 1 and R 2 include methyl, ethyl, propyl; or R 1 and R 2 , taken together form an optionally substituted 1-pyrrolidinyl or 1-piperazinyl.
  • R 1 and R 2 both are methyl or ethyl, or R 1 and R 2 , taken together form a 1-pyrrolidinyl ring, R 3 is ethyl or propyl.
  • R 1 and R 2 both are methyl or ethyl,
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 4-6 membered heterocyclic ring having up to 2 nitrogen heteroatoms.
  • Preferred R 1 and R 2 include methyl, ethyl, propyl; or R 1 and R 2 , taken together form 1-azetidinyl, 1-pyrrolidinyl, or 2,5-dihydropyrrolyl.
  • R 1 and R 2 are both methyl or ethyl.
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 4-6 membered heterocyclic ring having up to 2 nitrogen heteroatoms.
  • Preferred R 1 and R 2 include methyl, ethyl, propyl; or R 1 and R 2 , taken together form an optionally substituted 1-azetidinyl, 1-pyrrolidinyl, 2,5-dihydro-1H-pyrrolyl, 1-piperidinyl, or 1-piperazinyl.
  • R 1 and R 2 are both C 1-4 alphatic.
  • R 1 and R 2 are both methyl or ethyl.
  • R 1 and R 2 are both C 1-4 alphatic
  • R 1 and R 2 are both methyl or ethyl.
  • one of R 1 or R 2 is hydrogen and the other of R 1 or R 2 is an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • R 1 is hydrogen or C 1-6 aliphatic and R 2 is optionally substituted C 1-6 aliphatic, or R 1 and R 2 taken together form an optionally substituted 4-7 membered saturated ring, wherein said ring optionally contains a second heteroatom selected from O or N.
  • R 1 is hydrogen or C 1-6 aliphatic and R 2 is optionally substituted C 1-6 aliphatic, furanylmethyl, allyl, or benzyl, or R 1 and R 2 taken together is 4-carboethoxy-1-piperidinyl, 2-methylpiperidinyl, 2-hydroxymethylpiperidinyl, 3-hydroxypiperidinyl, 4-isobutylcarbamate-1-piperidinyl, 3-diethylaminocarbonyl-1-piperidinyl, 1-piperidyl, 1-pyrrolidinyl, 2-carboethoxypyrrolidinyl, N-morpholino, 3,5-dimethyl-N-morpholino, 4-methylpiperazinyl, 4-hydroxyethyl piperazinyl, 1-pyrrolyl, 2,4-dihydro-1-pyrrolyl, 1-azetidinyl, or 1-azepanyl.
  • R 1 is hydrogen or C 1-4 aliphatic and R 2 is C 1-4 aliphatic, furanylmethyl, allyl, or benzyl, or R 1 and R 2 taken together is 4-carboethoxy-1-piperidinyl, 2-methylpiperidinyl, 4-isobutylcarbamate-1-piperidinyl, 3-diethylaminocarbonyl-1-piperidinyl, 1-piperidyl, 1-pyrrolidinyl, 2-carboethoxypyrrolidinyl, 4-methylpiperazyl, 2,4-dihydro-1-pyrrolyl, 1-azetidinyl, or 1-azepanyl.
  • R 1 is hydrogen or C 1-4 aliphatic and R 2 C 1-4 aliphatic, furanylmethyl, allyl, or benzyl, or R 1 and R 2 taken together is 4-carboethoxy-1-piperidinyl, 2-methylpiperidinyl, 1-piperidinyl, 1-pyrrolidinyl, 4-methylpiperazyl, 2,4-dihydro-1-pyrrolyl, or 1-azetidinyl;
  • R 1 and R 2 are both methyl, or R 1 and R 2 taken together form 1-pyrrolidinyl, N-morpholinyl, 1-piperidyl, or 4-methyl piperidyl.
  • R 1 and R 2 are both methyl, or R 1 and R 2 taken together form 1-pyrrolidinyl, N-morpholinyl, 1-piperidyl, or 4-methyl piperidyl.
  • R 1 and R 2 are both methyl.
  • R 1 and R 2 taken together form 1-pyrrolidinyl, N-morpholinyl, 1-piperidyl, or 4-methyl piperidyl, preferably, 4-methyl piperidyl.
  • one of R 1 and R 2 is hydrogen, C 1-4 aliphatic, and the other of R 1 and R 2 is C 1-4 aliphatic, or benzyl, or R 1 and R 2 taken together form 1-pyrrolidinyl, 1-piperidinyl, or N-morpholinyl ring.
  • one of R 1 and R 2 is hydrogen, methyl, or ethyl, and the other of R 1 and R 2 is methyl, ethyl, or benzyl.
  • one of R 1 or R 2 is hydrogen and the other of R 1 or R 2 is a 5-6 membered aryl ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • one of R 1 or R 2 is hydrogen, and the other of R 1 or R 2 is an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • R 1 or R 2 is a 5- or 6-membered aryl ring having 0-5 heteroatoms independently selected from N, O, or S, or a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from N, O, or S
  • preferred R 1 and R 2 groups are selected from:
  • R 5 and R 6 are as previously defined and z is 0-4.
  • Most preferred rings include those shown below in Table 2.
  • R 1 and R 2 taken together with the nitrogen atom to which they are bound, form an optionally substituted 3-8 membered heterocyclyl ring having 1-3 heteroatoms independently selected from nitrogen, sulfur, or oxygen.
  • R 1 and R 2 are taken together with the nitrogen atom to which they are bound and form a 3-8 membered heterocyclyl group selected from:
  • R 5 and R 6 are as previously defined and z is 0-4.
  • R 1 and R 2 are taken together are an optionally substituted azetidinyl ring (bb). Or, R 1 and R 2 are taken together are an optionally substituted piperidinyl ring (ee). Or, R 1 and R 2 are taken together are an optionally substituted piperazinyl ring (dd). Or, R 1 and R 2 are taken together are an optionally substituted pyrrolidinyl ring (gg).
  • R 1 and R 2 taken together are optionally substituted pyrrolidin-1-yl (ff), piperidinyl (ee), piperazin-1-yl (dd), or morpholin-4-yl (ee).
  • R 1 and R 2 are each independently an optionally substituted C 1-6 aliphatic group, or R 1 and R 2 taken together form an optionally substituted pyrrolidinyl ring.
  • R 1 and R 2 are each independently an optionally substituted C 1-6 aliphatic group, or R 1 and R 2 taken together form an optionally substituted piperidinyl ring.
  • R 1 and R 2 are each independently an optionally substituted C 1-6 aliphatic group, or R 1 and R 2 taken together form an optionally substituted piperazinyl ring.
  • R 1 and R 2 are each independently an optionally substituted C 1-6 aliphatic group, or R 1 and R 2 taken together form an optionally substituted azetidinyl ring
  • R 1 and R 2 are each independently an optionally substituted C 1-6 aliphatic group, R 1 and R 2 taken together form an optionally substituted pyrrolidinyl ring, optionally substituted piperidyl ring, optionally substituted dihydropyrrolidinyl ring, or optionally substituted azetidinyl ring.
  • R 1 or R 2 is a 5-6 membered aryl ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 3-7 membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or when R 1 and R 2 , taken together with the nitrogen atom to which they are bound, form an optionally substituted 3-8 membered heterocyclyl or heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur, each ring is independently optionally substituted at one or more carbon atoms with 0-4 occurrences of —R 5 , and at one or more substitutable nitrogen atoms with —R 6 .
  • z is 0-3. In other preferred embodiments, z is 0 and the ring is unsubstituted.
  • Preferred R 5 groups when present, are halogen, CN, NO 2 , or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , OR′, —CH 2 OR′, SR′, —CH 2 SR′, COOR′, —NRCOR′, —NRC(O)OR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 5 groups are each independently Cl, Br, F, CF 3 , CHF 2 , Me, Et, propyl, CN, NO 2 , —COOH, NH 2 , —N(C 1-4 alkyl) 2 , —O(C 1-4 alkyl)OCH 3 , —CONH 2 , —NHC(O)C 1-4 alkyl, —NHC(O)(C 5-6 heterocyclyl), —NHC(O)OC 1-4 alkyl, —NHC(O)O(C 5-6 heterocyclyl), —C(O)OC 1-4 alkyl, —C(O)O(C 5-6 heterocyclyl), OH, —CH 2 OH, —NHCO C 1-4 alkyl, —NHC(O)(C 5-6 heterocyclyl), —SO 2 NH 2 , or SO 2 N(C 1-4 alkyl) 2 .
  • R 5 groups are each independently Cl, Br, F, CF 3 , Me, Et, CN, NO 2 , —COOH, NH 2 , —N(CH 3 ) 2 , —N(Et) 2 , —N(iPr) 2 , —O(CH 2 ) 2 OCH 3 , —CONH 2 , —COOCH 3 , —OH, —CH 2 OH, —NHCOCH 3 , —NHC(O)O(iPr), —NHC(O)O-tetrahydrofuranyl, —SO 2 NH 2 , SO 2 N(CH 3 ) 2 piperidinyl, piperizinyl, morpholino, or an optionally substituted group selected from C 1-4 alkoxy, phenyl, phenyloxy, benzyl, or benzyloxy.
  • R 6 groups are hydrogen, or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , —CH 2 OR′, —CH 2 SR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —C(O)OR′, CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 6 groups are each independently H, Me, CF 3 , ethyl, propyl, butyl, pentyl, CO(C 1 -C 4 alkyl), —CONH 2 , —C(O)(C 1 -C 4 alkyl), —C(O)(C 5-6 heterocyclyl), —C(O)O(C 1 -C 4 alkyl), —C(O)O(C 5-6 heterocyclyl), —CH 2 OH, —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , or optionally substituted phenyl.
  • Most preferred R 6 groups include those shown below in Table 2.
  • R 1 and R 2 identical.
  • R Z is —C(O)R 3 . In other embodiments, R Z is —C(O)OR 3 . In certain other embodiments, R Z is —SO 2 R′, —SO 2 NHR′, —NHSO 2 R′, —P(O)(OR′) 2 , or —C(O)N(CN)R′. In yet other embodiments, R Z is an optionally substituted 5-membered heteroaryl ring having 1-4 heteroatoms selected from O, S, or N, or an optionally substituted pyran-4-one-yl.
  • R z is an optionally substituted oxazolyl ring.
  • R Z is —(O)R 3 , wherein R 3 is an optionally substituted C 1 -C 6 alkyl group.
  • R Z is —C(O)R 3 , wherin R 3 is an optionally substituted C 1 -C 6 alkyl group or an aryl ring optionally substituted with 0-5 occurances of Q-R x .
  • R z is an aryl ring optionally substituted with 0-5 occurrences of Q-R x .
  • R z is R′.
  • R z is C(O)R 3 where R 3 is an optionally substituted C 1 -C 6 alkyl group, an aryl ring optionally substituted with 0-5 occurrences of Q-R x , an optionally substituted pyran-4-one-yl, or an optionally substituted 5-membered heteroaryl ring having 1-4 heteroatoms selected from O, S, or N.
  • R z is R′, —C(O)R 3 where R 3 is an optionally substituted C 1 -C 6 alkyl group, an aryl ring optionally substituted with 0-5 occurances of Q-R x , an optionally substituted pyran-4-one-yl, or an optionally substituted 5-membered heteroaryl ring having 1-4 heteroatoms selected from O, S, or N.
  • R z is R′, C(O)R 3 where R 3 is —N(R′) 2 , C(O)R 3 where R 3 is an optionally substituted C 1 -C 6 alkyl group, an aryl ring optionally substituted with 0-5 occurances of Q-R x , an optionally substituted pyran-4-one-yl, or an optionally substituted 5-membered heteroaryl ring having 1-4 heteroatoms selected from O, S, or N.
  • R Z is —C(O)R 3 , C(O)OR 3 , CN, or an optionally substituted C 1 -C 6 alkyl group where 0-5 carbon atoms have been optionally replaced with O, N, S, or carbonyl.
  • Preferred R Z groups are as shown below in Table 2.
  • R Z groups are as shown below in Table 2.
  • R 3 is bonded to the carbon atom of the carbonyl group through an atom other than oxygen or nitrogen.
  • R 3 is further defined as —CF 2 H, —CF 3 , —CHCl 2 , —CHBr 2 , CH 2 CN, —CH 2 OR′, —CH 2 SR′, —CH 2 N(R′) 2 , or as Q-R X ; wherein Q is an optionally substituted C 2 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN, provided that Q is bonded to the carbon atom of the carbonyl group through a carbon atom.
  • R 3 is further defined as —CF 2 H, —CF 3 , —CHCl 2 , —CHBr 2 , CH 2 CN, —CH 2 OR′, —CH 2 SR′, —CH 2 N(R′) 2 , or as Q-R X ; wherein Q is a bond, and R X is an optionally substituted group selected from C 2-8 aliphatic, C 6-10 aryl, a heteroaryl ring having 5-10 ring atoms, or a heterocyclyl ring having 3-10 ring atoms.
  • R 3 is hydrogen, or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , —CH 2 OR′, —CH 2 SR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 3 is H, Me, CF 3 , ethyl, propyl, butyl, pentyl, CO(C 1 -C 4 alkyl), —CONH 2 , —COO(C 1 -C 4 alkyl), —CH 2 OH, —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , or optionally substituted phenyl.
  • Most preferred R 3 groups include those shown below in Table 2.
  • R 4 is hydrogen. In other embodiments of the present invention, R 4 is an optionally substituted C 1 -C 6 alkyl group. In yet other embodiments, R 4 is an optionally substituted aryl group. In other embodiments, R 4 is hydrogen or an optionally substituted C 1 -C 6 alkyl group.
  • R 4 is hydrogen, halogen, CN, NO 2 , or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , OR′, —CH 2 OR′, SR′, —CH 2 SR′, COOR′, —NRCOR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 4 is H, Cl, Br, F, CF 3 , Me, Et, CN, NO 2 , —COOH, NH 2 , —N(CH 3 ) 2 , —N(Et) 2 , —N(iPr) 2 , —O(CH 2 ) 2 OCH 3 , —CONH 2 , —COOCH 3 , —OH, —CH 2 OH, —NHCOCH 3 , —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , piperidinyl, piperizinyl, morpholino, or an optionally substituted group selected from C 1-4 alkoxy, phenyl, phenyloxy, benzyl, or benzyloxy.
  • Most preferred R 4 groups include those shown below in Table 2.
  • ring A is a 5-6 membered aryl ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, optionally substituted at one or more carbon atoms with 0-5 occurrences of —R 7 , and at one or more substitutable nitrogen atoms with —R 8 .
  • ring A is a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur, optionally substituted at one or more carbon atoms with 0-5 occurrences of —R 7 , and at one or more substitutable nitrogen atoms with —R 8 .
  • ring A is a phenyl, pyridinyl, pyrimidinyl, pyridazinyl, pyrazinyl, pyrrolyl, piperidinyl, indolyl, indazolyl, benzotriazolyl, pyrazolyl, benzopyrazolyl, imidazolyl, benzimidazolyl, thiazolyl, benzthizolyl, oxazolyl, benzoxazolyl, isoxazolyl, benzisoxazolyl, isothiazolyl, benzisothiazolyl, triazolyl, benzotriazolyl, thiadiazolyl, thienyl, benzothienyl, furanoyl, benzofuranoyl, or triazinyl ring, each optionally substituted at one or more carbon atoms with 0-5 occurrences of —R 7 , and at one or more substitu
  • ring A can be attached to the pyrimidinyl ring through any available carbon or nitrogen atom (e.g., a thiazole ring can be attached in the 2-, 4-, or 5-position).
  • ring A is optionally substituted phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl:
  • y is 0-3. In other preferred embodiments, y is 0 and ring A is unsubstituted.
  • ring A is:
  • ring A is an optionally substituted piperidyl ring or an optionally substituted pyrrolyl ring.
  • ring A is a phenyl ring optionally substituted with one or more halogens, an optionally substituted piperidyl ring, or an optionally substituted pyrrolyl ring.
  • ring A is a phenyl ring optionally substituted with 1-5 occurrences of Q-R x , wherein Q is selected from a bond, O, N, and R x is R′.
  • ring A is a phenyl ring optionally substituted with 1-5 occurrences of Q-R x , an optionally substituted imidazolyl ring, an optionally substituted pyrazolyl ring, an optionally substituted piperidyl ring, an optionally substituted pyrrolyl ring, or an optionally substituted indolyl ring.
  • ring A is a phenyl ring optionally substituted with one or more halogens, an optionally substituted piperidyl ring, an optionally substituted pyrrolyl ring.
  • ring A is a phenyl ring optionally substituted with 1-5 occurrences of Q-R x where Q is selected from a bond, O, N and R x is R′.
  • ring A is a phenyl ring optionally substituted with one or more halogens, an optionally substituted piperidyl ring, an optionally substituted pyrrolyl ring, an optionally substituted thienyl ring, or ring A is a phenyl ring optionally substituted with 1-5 occurances of Q-R x where Q is selected from a bond, O, N and R x is selected from R′.
  • R 7 groups are hydrogen, halogen, CN, NO 2 , or an optionally substituted group selected from C 1-6 alkyl, haloalkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , OR′, —CH 2 OR′, SR′, —CH 2 SR′, COOR′, —NRCOR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 7 groups are each independently H, Cl, Br, F, CF 3 , Me, Et, CN, NO 2 , —COOH, NH 2 , —N(CH 3 ) 2 , —N(Et) 2 , —N(iPr) 2 , —O(CH 2 ) 2 OCH 3 , —CONH 2 , —COOCH 3 , —OH, —CH 2 OH, —CHF 2 , —NHCOCH 3 , —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , piperidinyl, piperizinyl, morpholino, or an optionally substituted group selected from C 1-4 alkoxy, phenyl, phenyloxy, benzyl, or benzyloxy.
  • R 7 groups include any one of those shown below in Table 2.
  • R 8 groups are hydrogen, or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , —CH 2 OR′, —CH 2 SR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 8 groups are each independently H, Me, CF 3 , ethyl, propyl, butyl, pentyl, CO(C 1 -C 4 alkyl), —CONH 2 , —COO(C 1 -C 4 alkyl), —CH 2 OH, —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , or optionally substituted phenyl.
  • Most preferred R 8 groups include those shown below in Table 2.
  • ring A is phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • ring A is a 2-substituted phenyl, wherein said substituent is Q-R X , wherein Q is a bond.
  • ring A is optionally substituted phenyl, 5 membered heteroaryl, or 6-membered heterocyclyl ring.
  • Preferred ring A includes Preferred ring A includes phenyl or a 5-membered heteroaryl having 1 heteroatom, wherein said ring A has up to two Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • ring A is optionally substituted phenyl, piperidyl, or pyrrolyl. Preferred embodiments are those wherein ring A has up to two substituents selected from halo, OH, OCF 3 , or C 1-4 aliphatic. Or, ring A is phenyl, 1-piperidyl, or 1-pyrrolyl, wherein ring A has up to two substituents selected from halo or OH.
  • ring A is optionally substituted phenyl, 5-membered heteroaryl, or six-membered heterocyclyl.
  • Preferred ring A include phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • ring A is phenyl optionally substituted with halo, or OH.
  • ring A is optionally substituted phenyl, 5-6 membered heterocyclic or heteroaryl ring.
  • Preferred ring A includes phenyl or a 5-membered heteroaryl having 1 heteroatom, wherein said ring A has up to two Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • ring A is phenyl, 1-pyrrolidyl, or 1-pyrrolyl, having up to two substitu
  • ring A is phenyl having up to two Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • ring A is phenyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • ring A is aryl or 5-10 membered heteroaromatic or heterocyclyl, having up to four Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • ring A is phenyl, indolyl, or pyrrolyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • ring A is phenyl or pyrrolyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • ring A is phenyl or pyrrolyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • ring A ring A is phenyl, 1-piperidinyl, 1-pyrrolyl, thienyl, 2-methyl-indol-1-yl, 3,4,-methyldioxyphenyl, having up to two R 7 substituents selected from H, Cl, Br, F, CF 3 , CN, Me, —SMe, Et, —OH, —OCH 3 , —OCF 3 , —C(O)CH 3 , or phenyloxy.
  • ring A is phenyl, 1-piperidinyl, 1-pyrrolyl, thienyl, 2-methyl-indol-1-yl, 3,4,-methyldioxyphenyl, having up to two R 7 substituents selected from H, Cl, Br, F, CF 3 , CN, Me, —SMe, Et, —OH, —OCH 3 , —OCF 3 , —C(O)CH 3 , or phenyloxy.
  • ring A is phenyl, 1-piperidinyl, 1-pyrrolyl, thienyl, 2-methyl-indol-1-yl, 3,4,-methyldioxyphenyl, having up to two R 7 substituents selected from H, Cl, Br, F, CF 3 , Me, Et, —OH, —OCH 3 , —OCF 3 , or phenyloxy.
  • ring A is phenyl, 1-piperidyl or 1-pyrrolyl, having up to two R 7 substituents selected from H, Cl, Br, F, CF 3 , Me, —OH, —OCF 3 , phenyloxy,
  • the present invention provides compounds of formula IA, formula IB, or formula IC:
  • R Z1 is —SO 2 R′, —SO 2 NHR′, —NHSO 2 R′, —P(O)(OR′) 2 , —C(O)N(CN)R′, an optionally substituted 5-membered heteroaryl ring having 1-4 heteroatoms selected from O, S, or N, or an optionally substituted pyran-4-one-yl.
  • R 1 and R 2 both are optionally substituted C 1-4 aliphatic, R 3 is C 1-4 aliphatic, R 4 is hydrogen, and ring A is optionally substituted phenyl.
  • Preferred R 1 and R 2 include methyl, ethyl, or propyl.
  • Preferred R 3 include ethyl, propyl or butyl.
  • Preferred ring A includes phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 both are optionally substituted C 1-4 aliphatic, R 3 is C 1-4 aliphatic, R 4 is hydrogen, and ring A is optionally substituted 5-6 membered aryl, heteroaryl, or heterocyclic ring.
  • Preferred R 1 and R 2 include methyl, ethyl, or propyl.
  • Preferred R 3 include ethy, propyl or butyl.
  • Preferred ring A includes phenyl or a 5-6 membered heteroaryl or heterocyclyl ring having one nitrogen ring atom, wherein ring A has up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 both are optionally substituted C 1-4 aliphatic
  • R Z1 is an optionally substituted 5-membered heteroaryl ring having up to 2 heteroatoms selected from O and N
  • R 4 is hydrogen
  • ring A is an optionally substituted phenyl.
  • Preferred R 1 and R 2 include methyl, ethyl, or propyl.
  • Preferred ring A includes phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both C 1-4 aliphatic or R 1 and R 2 taken together form a 5-6 membered heterocyclic ring, R 3 is optionally substituted C 1-4 aliphatic or aryl, R 4 is hydrogen, and ring A is optionally substituted phenyl.
  • R 1 and R 2 include methyl, ethyl, or propyl; or R 1 and R 2 , taken together form an optionally substiuted 1-pyrrolidinyl or 1-piperidinyl.
  • Preferred R 3 includes optionally substituted ethyl, propyl, butyl, or phenyl.
  • Preferred ring A include phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 both are methyl or ethyl, R 3 is ethyl or propyl, R 4 is hydrogen, and ring A is a 2-substituted phenyl, wherein said substituent is Q-R X , wherein Q is a bond.
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 3-6 membered heterocyclic ring having up to 2 heteroatoms, R 3 is optionally C 1-4 aliphatic, R 4 is hydrogen, and ring A is optionally substituted phenyl, 5 membered heteroaryl, or 6-membered heterocyclyl.
  • R 1 and R 2 include methyl, ethyl, propyl; or R 1 and R 2 , taken together form an optionally substituted 1-azetidinyl, 1-pyrrolidinyl, 1-piperidinyl, or 1-piperazinyl.
  • Preferred R 3 includes optionally substituted ethyl, propyl, or butyl.
  • Preferred ring A includes phenyl or a 5-membered heteroaryl having 1 heteroatom, wherein said ring A has up to two Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 both are methyl or ethyl, or R 1 and R 2 , taken together form a 1-pyrrolidinyl ring
  • R 3 is ethyl or propyl
  • R 4 is hydrogen
  • ring A is optionally substituted phenyl, piperidyl, or pyrrolyl.
  • Preferred embodiments are those wherein ring A has up to two substituents selected from halo, OH, OCF 3 , or C 1-4 aliphatic.
  • R 1 and R 2 both are methyl or ethyl
  • R 3 is ethyl
  • R 4 is hydrogen
  • ring A is phenyl, 1-piperidyl, or 1-pyrrolyl, wherein ring A has up to two substituents selected from halo or OH.
  • R 1 and R 2 are both C 1-4 alphatic, R Z1 is a 5-membered heteraryl having up to two heteroatoms, R 4 is hydrogen, and ring A is an optionally substituted phenyl.
  • R 1 and R 2 include methyl, ethyl, or propyl.
  • Preferred R Z1 includes optionally substituted oxazolyl.
  • Preferred ring A includes phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both C 1-4 alphatic, R 3 is optionally substituted C 1-4 aliphatic, R 4 is hydrogen, and ring A is optionally substituted phenyl.
  • R 1 and R 2 include methyl or ethyl.
  • Preferred R 3 includes optionally substituted ethyl, or propyl.
  • Preferred ring A include phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both methyl or ethyl, R 3 is ethyl or propyl, R 4 is hydrogen, and ring A is phenyl optionally substituted with halo, or OH.
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 4-6 membered heterocyclic ring having up to 2 nitrogen heteroatoms, R 3 is optionally substituted C 1-4 aliphatic, R 4 is hydrogen, and ring A is optionally substituted phenyl or 5-membered heteroaryl.
  • R 1 and R 2 include methyl, ethyl, propyl; or R 1 and R 2 , taken together form an optionally substituted 1-pyrrolidinyl or 1-piperazinyl.
  • Preferred R 3 includes optionally substituted ethyl, propyl, or butyl.
  • Preferred ring A includes phenyl or a 5-membered heteroaryl having 1 heteroatom, wherein said ring A has up to two Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 both are methyl or ethyl, or R 1 and R 2 , taken together form a 1-pyrrolidinyl ring
  • R 3 is ethyl or propyl
  • R 4 is hydrogen
  • ring A is optionally substituted phenyl, piperidyl, or pyrrolyl.
  • Preferred embodiments are those wherein ring A has up to two substituents selected from halo, OH, OCF 3 , or C 1-4 aliphatic.
  • R 1 and R 2 both are methyl or ethyl
  • R 3 is ethyl
  • R 4 is hydrogen
  • ring A is phenyl, 1-piperidyl, or 1-pyrrolyl, wherein ring A has up to two substituents selected from halo or OH.
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 4-6 membered heterocyclic ring
  • R 3 is optionally substituted C 1-4 aliphatic or aryl
  • R 4 is hydrogen
  • ring A is optionally substituted phenyl, 5-membered heteroaryl, or six-membered heterocyclyl.
  • Preferred R 1 and R 2 include methyl, ethyl, or propyl; or R 1 and R 2 , taken together form a 4-6 membered heterocyclic ring having up to 2 nitrogen heteroatoms, including 1-azetidinyl, 1-pyrrolidinyl, or 2,5-dihydropyrrolyl.
  • Preferred R 3 includes optionally substituted ethyl, propyl, butyl, or phenyl.
  • Preferred ring A include phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both methyl or ethyl, R 3 is ethyl or propyl, R 4 is hydrogen, and ring A is phenyl optionally substituted with halo, or OH.
  • R 1 and R 2 are both C 1-4 alphatic or R 1 and R 2 taken together form a 4-6 membered heterocyclic ring having up to 2 nitrogen heteroatoms, R 3 is optionally substituted C 1-4 aliphatic, R 4 is hydrogen, and ring A is optionally substituted phenyl, 5-6 membered heterocyclic or heteroaryl ring.
  • Preferred R 1 and R 2 include methyl, ethyl, propyl; or R 1 and R 2 , taken together form an optionally substituted 1-azetidinyl, 1-pyrrolidinyl, 2,5-dihydro-1H-pyrrolyl, 1-piperidinyl, or 1-piperazinyl.
  • Preferred R 3 includes optionally substituted ethyl, propyl, or butyl.
  • Preferred ring A includes phenyl or a 5-membered heteroaryl having 1 heteroatom, wherein said ring A has up to two Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both C 1-4 alphatic
  • R 3 is ethyl, propyl, or butyl
  • R 4 is hydrogen
  • ring A is phenyl, 1-pyrrolidyl, or 1-pyrrolyl, having up to two substituents selected from halo, OH, OCF 3 , or C 1-4 aliphatic.
  • R 1 and R 2 are both methyl or ethyl, R 3 is ethyl, R 4 is hydrogen, ring A is phenyl, 1-pyrrolidyl, or 1-pyrrolyl, having up to two substituents selected from halo, OH, OCF 3 , or C 1-4 aliphatic.
  • Preferred ring A in this embodiment includes optionally substituted 1-piperidyl or 1-pyrrolyl.
  • R 1 and R 2 are both C 1-4 alphatic
  • R Z1 is a 5-membered heteraryl having up to two heteroatoms
  • R 4 is hydrogen
  • ring A is an optionally substituted phenyl.
  • Preferred R 1 and R 2 include methyl, ethyl, or propyl.
  • Preferred R Z1 includes optionally substituted oxazolyl, cyano, or aliphatic-oxymethyl.
  • Preferred ring A includes phenyl having up to one Q-R X substituent, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both C 1-4 aliphatic
  • R 3 is R 3 is C 1-4 aliphatic
  • R 4 is hydrogen
  • ring A is phenyl having up to two Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both methyl or ethyl
  • R 3 is propyl, n-butyl, or isobutyl
  • R 4 is hydrogen
  • ring A is phenyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • R 1 and R 2 are both C 1-4 aliphatic, or R 1 and R 2 together form an optionally substituted 5-6 membered heterocyclic ring having up to 2 heteroatoms
  • R 3 is C 1-4 aliphatic
  • R 4 is hydrogen
  • ring A is aryl or 5-10 membered heteroaromatic or heterocyclyl, having up to four Q-R X substituents, wherein Q is a bond or is a C 1 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN.
  • R 1 and R 2 are both C 1-4 aliphatic, or R 1 and R 2 together form an optionally substituted 5-6 membered heterocyclic ring having up to 2 heteroatoms, R 3 is C 1-4 aliphatic, R 4 is hydrogen, and ring A is phenyl, indolyl, or pyrrolyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • R 1 and R 2 are both methyl or ethyl, or R 1 and R 2 together form an optionally substituted pyrrolidinyl or piperidinyl ring, R 3 is methyl or ethyl, R 4 is hydrogen, and ring A is phenyl or pyrrolyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • R 1 and R 2 are both methyl or ethyl, or R 1 and R 2 together form a pyrrolidinyl or 3-hydroxy-piperidinyl ring, R 3 is methyl or ethyl, R 4 is hydrogen, and ring A is phenyl or pyrrolyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • R 1 and R 2 are both C 1-4 aliphatic
  • R Z1 is optionally substituted phenyl or 5-membered heteroaromatic having up to 3 heteroatoms
  • R 4 is hydrogen
  • ring A is phenyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • R Z1 in this embodiment is —C(O)NH(C 1-4 aliphatic).
  • R 1 and R 2 are both methyl or ethyl
  • R Z1 is optionally substituted phenyl or oxadiazolyl
  • R 4 is hydrogen
  • ring A is phenyl having up to two substituents selected from halo, OH, OMe, OCF 3 , or C 1-4 aliphatic.
  • ring A is optionally substituted phenyl, and compounds of formula IIA or formula IIB are provided:
  • R 1 , R 2 , R 3 , R 7 , and y are defined generally above and in subsets herein.
  • neither R 1 nor R 2 is hydrogen. In certain other embodiments, neither R 1 nor R 2 is hydrogen, and R 1 and R 2 are each independently selected from a 5- or 6-membered aryl ring having 0-5 heteroatoms independently selected from N, O, or S; a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from N, O, or S; or an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • both R 1 and R 2 are an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • R 1 and R 2 are an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2
  • preferred R 1 and R 2 groups are optionally substituted methyl, ethyl, cyclopropyl, n-propyl, propenyl, cyclobutyl, (CO)OCH 2 CH 3 , (CH 2 ) 2 OCH 3 , CH 2 (CO)OCH 2 CH 3 , CH 2 (CO)OCH 3 , CH(CH 3 )CH 2 CH 3 , or t-butyl, or n-butyl.
  • Most preferred R 1 and R 2 groups include those shown below in Table 2.
  • one of R 1 or R 2 is hydrogen and the other of R 1 or R 2 is a 5-6 membered aryl ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
  • one of R 1 or R 2 is hydrogen, and the other of R 1 or R 2 is an optionally substituted C 1-4 aliphatic group, wherein one or more methylene units in the C 1-4 aliphatic group are optionally replaced with NR, O, (CO)O, O(CO), NR(CO), (CO)NR, SO 2 (NR), or (NR)SO 2 .
  • R 1 or R 2 is a 5- or 6-membered aryl ring having 0-5 heteroatoms independently selected from N, O, or S, or a 3-7-membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from N, O, or S
  • preferred R 1 and R 2 groups are selected from:
  • R 5 and R 6 are as previously defined and z is 0-4.
  • Most preferred rings include those shown below in Table 2.
  • R 1 and R 2 taken together with the nitrogen atom to which they are bound, form an optionally substituted 3-8 membered heterocyclyl ring having 1-3 heteroatoms independently selected from nitrogen, sulfur, or oxygen.
  • R 1 and R 2 are taken together with the nitrogen atom to which they are bound and form a 3-8 membered heterocyclyl group selected from:
  • R 5 and R 6 are as previously defined and z is 0-4.
  • R 1 and R 2 taken together are optionally substituted pyrrolidin-1-yl (ff), piperidin-1-yl (dd), piperazin-1-yl (cc), or morpholin-4-yl (ee).
  • R 1 or R 2 is a 5-6 membered aryl ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 3-7 membered saturated or partially unsaturated ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or when R 1 and R 2 , taken together with the nitrogen atom to which they are bound, form an optionally substituted 3-8 membered heterocyclyl or heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur, the ring can be substituted with up to four independent occurrences of R 5 .
  • z is 0-2. In other preferred embodiments, z is 0 and the ring is unsubstituted.
  • Preferred R 5 groups when present, are halogen, CN, NO 2 , or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , OR′, —CH 2 OR′, SR′, —CH 2 SR′, COOR′, —NRCOR′, NRC(O)OR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 5 groups are each independently Cl, Br, F, CF 3 , Me, Et, CN, NO 2 , —COOH, NH 2 , —N(CH 3 ) 2 , —N(Et) 2 , —N(iPr) 2 , —O(CH 2 ) 2 OCH 3 , —CONH 2 , —COOCH 3 , —OH, —CH 2 OH, —NHCOCH 3 , —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , piperidinyl, piperizinyl, morpholino, or an optionally substituted group selected from C 1-4 alkoxy, phenyl, phenyloxy, benzyl, or benzyloxy.
  • R 6 groups are hydrogen, or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , —CH 2 OR′, —CH 2 SR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —C(O)OR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 6 groups are each independently H, Me, CF 3 , ethyl, propyl, butyl, pentyl, CO(C 1 -C 4 alkyl), —CONH 2 , —COO(C 1 -C 4 alkyl), —CH 2 OH, —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , or optionally substituted phenyl.
  • Most preferred R 6 groups include those shown below in Table 2.
  • R 3 is bonded to the carbon atom of the carbonyl group through an atom other than oxygen or nitrogen.
  • R 3 is further defined as —CF 2 H, —CF 3 , —CHCl 2 , —CHBr 2 , CH 2 CN, —CH 2 OR′, —CH 2 SR′, —CH 2 N(R′) 2 , or as Q-R X ; wherein Q is an optionally substituted C 2 -C 6 alkylidene chain wherein up to two non-adjacent methylene units of Q are optionally replaced by CO, CO 2 , COCO, CONR, OCONR, NRNR, NRNRCO, NRCO, NRCO 2 , NRCONR, SO, SO 2 , NRSO 2 , SO 2 NR, NRSO 2 NR, O, S, or NR; and each occurrence of R X is independently selected from R′, halogen, NO 2 , or CN, provided that Q is bonded to the carbon atom of the carbonyl group through a
  • R 3 is further defined as Q-R X ; wherein Q is a bond, and R X is an optionally substituted group selected from C 2-8 aliphatic, C 6-10 aryl, a heteroaryl ring having 5-10 ring atoms, or a heterocyclyl ring having 3-10 ring atoms.
  • R 3 is an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —CH 2 N(R′) 2 , —CH 2 OR′, —CH 2 SR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, or —(CH 2 ) 2 SR′.
  • R 3 is further defined as —CF 2 H, —CF 3 , —CHCl 2 , —CHBr 2 , CH 2 CN, —CH 2 OR′, —CH 2 SR′, —CH 2 N(R′) 2 , or as Q-R X ; wherein Q is a bond, and R X is an optionally substituted group selected from C 2-8 aliphatic, C 6-10 aryl, a heteroaryl ring having 5-10 ring atoms, or a heterocyclyl ring having 3-10 ring atoms.
  • R 3 is hydrogen, or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , —CH 2 OR′, —CH 2 SR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 3 is H, Me, CF 3 , ethyl, propyl, butyl, pentyl, CO(C 1 -C 4 alkyl), —CONH 2 , —COO(C 1 -C 4 alkyl), —CH 2 OH, —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , or optionally substituted phenyl.
  • Most preferred R 3 groups include those shown below in Table 2.
  • R 4 is hydrogen, halogen, CN, NO 2 , or an optionally substituted group selected from C 1-6 alkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , OR′, —CH 2 OR′, SR′, —CH 2 SR′, COOR′, —NRCOR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 4 is H, Cl, Br, F, CF 3 , Me, Et, CN, NO 2 , —COOH, NH 2 , —N(CH 3 ) 2 , —N(Et) 2 , —N(iPr) 2 , —O(CH 2 ) 2 OCH 3 , —CONH 2 , —COOCH 3 , —OH, —CH 2 OH, —NHCOCH 3 , —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , piperidinyl, piperizinyl, morpholino, or an optionally substituted group selected from C 1-4 alkoxy, phenyl, phenyloxy, benzyl, or benzyloxy.
  • Most preferred R 4 groups include those shown below in Table 2.
  • R 7 groups are hydrogen, halogen, CN, NO 2 , or an optionally substituted group selected from C 1-6 alkyl, haloalkyl, aryl, aryl(C 1-6 )alkyl, —N(R′) 2 , —CH 2 N(R′) 2 , OR′, —CH 2 OR′, SR′, —CH 2 SR′, COOR′, —NRCOR′, —(CH 2 ) 2 N(R′) 2 , —(CH 2 ) 2 OR′, —(CH 2 ) 2 SR′, —COR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • R 7 groups are each independently H, Cl, Br, F, CF 3 , —CHF 2 , Me, Et, CN, NO 2 , —COOH, NH 2 , —N(CH 3 ) 2 , —N(Et) 2 , —N(iPr) 2 , —O(CH 2 ) 2 OCH 3 , —CONH 2 , —COOCH 3 , —OH, —OCF 3 , —CH 2 OH, —NHCOCH 3 , —SO 2 NH 2 , SO 2 N(CH 3 ) 2 , piperidinyl, piperizinyl, morpholino, or an optionally substituted group selected from C 1-4 alkoxy, phenyl, phenyloxy, benzyl, or benzyloxy.
  • Most preferred R 7 groups include those shown below in Table 2.
  • compounds of formula IIB have at least one, and preferably all, of the following features:
  • compounds of formula IIB have at least one, and preferably all, of the following features:
  • compounds of formula IIB have at least one, and preferably all, of the following features:
  • compounds of formula IIB have at least one, and preferably all, of the following features:
  • y is 1 and compounds have the general formula IIIA:
  • R 7 is halogen, CN, NO 2 , or an optionally substituted group selected from C 1-4 alkyl, aryl, aralkyl, —N(R′) 2 , —CH 2 N(R′) 2 , —OR′, —CH 2 OR′, —SR′, —CH 2 SR′, —COOR′, —NRCOR′, —CON(R′) 2 , or —S(O) 2 N(R′) 2 .
  • compounds have the general formula IIIA, wherein R 7 is hydrogen.
  • compounds of the invention are defined according to formula IIIA and one or more of, or all of, R 1 , R 2 , R 3 or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIIA and one or more of, or all of, R 1 , R 2 , R 3 or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIIA and one or more of, or all of, R 1 , R 2 , R 3 or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIIA and one or more of, or all of, R 1 , R 2 , R 3 or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIIA and one or more of, or all of, R 1 , R 2 , R 3 , R 4 , or R 7 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIIA and one or more of, or all of, R 1 , R 2 , R 3 , R 4 , or R 7 are further defined according to one or more of, or all of, the following groups:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • compounds of formula IIIA have at least one, and preferably all, of the following features:
  • y is 1 and compounds have the general formula IIIB:
  • R 7 is halogen, CN, NO 2 , or an optionally substituted group selected from C 1-4 alkyl, aryl, aralkyl, —N(R′) 2 , —CH 2 N(R′) 2 , —OR′, —CH 2 OR′, —SR′, —CH 2 SR′, —COOR′, —NRCOR′, —CON(R′) 2 , SO 2 R′, or —SO 2 N(R′) 2 .
  • compounds of the invention are defined according to formula IIIB, and one or more of, or all of, R 1 , R 2 , R 3 or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIIB, and one or more of, or all of, R 1 , R 2 , R 3 or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIIB, and one or more of, or all of, R 1 , R 2 , R 3 , R 4 or R 7 are further defined according to one or more of, or all of, the following groups:
  • compounds of formula IIIB have at least one, and preferably all, of the following features:
  • compounds of formula IIIB have at least one, and preferably all, of the following features:
  • ring A is optionally substituted phenyl, and compounds of formula IIC are provided:
  • R 1 , R 3 , R 4 , R 7 , and y are defined generally above and in subsets herein; and wherein R Z1 is —SO 2 R′, —SO 2 NHR′, —NHSO 2 R′, —P(O)(OR′) 2 , —C(O)N(CN)R′, or an optionally substituted ring selected from:
  • R Z1 is —SO 2 R′, —SO 2 NHR′, —NHSO 2 R′, —P(O)(OR′) 2 , —C(O)N(CN)R′.
  • Preferred R Z1 include —SO 2 NHR′, —NHSO 2 R′, or —C(O)N(CN)R′.
  • R Z1 is —SO 2 R′, —NHSO 2 R′, or —C(O)N(CN)R′.
  • R Z1 is a ring selected from:
  • compounds of the invention are defined according to formula IIC, and one or more of, or all of, R 1 , R 2 , or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIC, and one or more of, or all of, R 1 , R 2 , or R 4 are further defined according to one or more of, or all of, the following groups:
  • compounds of the invention are defined according to formula IIC, and one or more of, or all of, R 1 , R 2 , R 4 or R 7 are further defined according to one or more of, or all of, the following groups:
  • ring A is optionally substituted phenyl, and compounds of formula IIIC are provided:
  • R 1 , R 2 , R 3 , and R 7 are defined generally above and in subsets herein; and wherein R Z1 is —SO 2 R′, —NHSO 2 R′, —C(O)N(CN)R′, or an optionally substituted ring selected from:
  • R 1 and R 2 are identical, and they both are methyl or ethyl. Or, R 1 and R 2 are taken together to form a 1-piperidyl, 1-piperazyl, or 1-pyrrolidinyl.
  • ring A is optionally substituted phenyl, and compounds of IVC are provided:
  • R Z2 is cyano or halo, R 7 , y, R 1 , R 2 , and R 4 are as defined above.
  • X is O, NH, S, or CH 2 , and each of the two phenyl ring is optionally substituted.
  • R 1 and R 2 taken together form: R Z1 R 4 Ring A N-morpholino F H phenyl 2H-pyridazin-3-one-1-yl Cl H phenyl N-piperidyl Cl H phenyl N-morpholino Cl H phenyl N-piperidyl Cl H 4-NO 2 -phenyl N-morpholino CN H 2-OH-phenyl
  • the compounds described in this invention are useful as inhibitors of ion channels, preferably, voltage gated sodium channels and N-type calcium channels.
  • compounds of the invention are useful as inhibitors of NaV1.2.
  • compounds of the invention are useful as inhibitors of NaV1.5.
  • compounds of the invention are useful as inhibitors of NaV1.8.
  • compounds of the invention are useful as inhibitors of NaV 1.8 and CaV2.2.
  • compounds of this invention are useful as inhibitors of CaV2.2.
  • comopunds of this invention are useful as dual inhibitors of NaV1.8 and a TTX-sensitive ion channel such as NaV1.3 or NaV1.7.
  • the compounds of this invention may be prepared in general by methods known to those skilled in the art for analogous compounds, as illustrated by the general scheme below, and the preparative examples that follow.
  • Scheme I below depicts general conditions for the synthesis of compounds of formulas IB, IIB, IIIB via amidines and alkoxyalkylidine malonates.
  • Scheme III depicts synthesis of the requisite alkoxyalkylidine malonates 1 required for the preparation of IB, IIB, IIIB in the above Scheme I.
  • Scheme V below depicts synthesis of C2 aza substituted pyrimidines using C2 halopyrimidines, via displacement at C2 of the pyrimidine with an incoming heteroatom nucleophile.
  • chloropyrimidine 10 Treatment of chloropyrimidine 10 with the appropriate nucleophilic amine in the presence of a proton scavenger generates 11; in cases where the incoming amine is not sufficiently nucleophilic, generation of the amine anion with strong base such as sodium hydride followed by arylation with electrophile 10 gives 11.
  • Scheme VI depicts synthesis of compounds IA using C5 halopyrimidines.
  • Scheme VII below depicts synthesis of compounds IC, IIC, IIIC via a tandem Suzuki strategy.
  • Chlorination of bromouracil 19 affords dichlorobromopyrimidine 20, which undergoes amination at C4 by treatment with the appropriate amine R 1 R 2 NH. Suzuki cross coupling occurs at C5 to yield 2-chloropyrimidine 22, which is subsequently cross coupled with boronates 23a, 23b, 23c to give IC, IIC, IIIC.
  • Scheme IX depicts the preparation of IB derivatives 31, 32, 33, 34, which also facilitate synthesis of compounds IA.
  • Scheme X depicts the utility of carboxylate 31 in the preparation of C5 derivatives IC and IB, for example C5 derivatives 34 and C5 heteroaryl systems 33, 36, 37.
  • Sheme XI depicts further utility of nitrile 26 in the preparation of oxadiazoles.
  • the present invention provides compounds that are inhibitors of voltage-gated sodium ion channels, and thus the present compounds are useful for the treatment of diseases, disorders, and conditions including, but not limited to acute, chronic, neuropathic, or inflammatory pain, arthritis, migrane, cluster headaches, trigeminal neuralgia, herpetic neuralgia, general neuralgias, epilepsy or epilepsy conditions, neurodegenerative disorders, psychiatric disorders such as anxiety and depression, myotonia, arrythmia, movement disorders, neuroendocrine disorders, ataxia, multiple sclerosis, irritable bowel syndrome, and incontinence.
  • diseases, disorders, and conditions including, but not limited to acute, chronic, neuropathic, or inflammatory pain, arthritis, migrane, cluster headaches, trigeminal neuralgia, herpetic neuralgia, general neuralgias, epilepsy or epilepsy conditions, neurodegenerative disorders, psychiatric disorders such as anxiety and depression, myotonia, ar
  • compositions comprising any of the compounds as described herein, and optionally comprise a pharmaceutically acceptable carrier, adjuvant or vehicle.
  • these compositions optionally further comprise one or more additional therapeutic agents.
  • a pharmaceutically acceptable derivative includes, but is not limited to, pharmaceutically acceptable salts, esters, salts of such esters, or any other adduct or derivative which upon administration to a patient in need is capable of providing, directly or indirectly, a compound as otherwise described herein, or a metabolite or residue thereof.
  • the term “pharmaceutically acceptable salt” refers to those salts which are, within the scope of sound medical judgement, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
  • a “pharmaceutically acceptable salt” means any non-toxic salt or salt of an ester of a compound of this invention that, upon administration to a recipient, is capable of providing, either directly or indirectly, a compound of this invention or an inhibitorily active metabolite or residue thereof.
  • the term “inhibitorily active metabolite or residue thereof” means that a metabolite or residue thereof is also an inhibitor of a voltage-gated sodium ion channel.
  • Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge, et al. describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1-19, incorporated herein by reference.
  • Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases.
  • Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate,
  • Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N + (C 1-4 alkyl) 4 salts.
  • This invention also envisions the quaternization of any basic nitrogen-containing groups of the compounds disclosed herein. Water or oil-soluble or dispersable products may be obtained by such quaternization.
  • Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like.
  • Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate.
  • the pharmaceutically acceptable compositions of the present invention additionally comprise a pharmaceutically acceptable carrier, adjuvant, or vehicle, which, as used herein, includes any and all solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like, as suited to the particular dosage form desired.
  • a pharmaceutically acceptable carrier, adjuvant, or vehicle which, as used herein, includes any and all solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like, as suited to the particular dosage form desired.
  • Remington's Pharmaceutical Sciences, Sixteenth Edition, E. W. Martin (Mack Publishing Co., Easton, Pa., 1980) discloses various carriers used in formulating pharmaceutically acceptable compositions
  • any conventional carrier medium is incompatible with the compounds of the invention, such as by producing any undesirable biological effect or otherwise interacting in a deleterious manner with any other component(s) of the pharmaceutically acceptable composition, its use is contemplated to be within the scope of this invention.
  • materials which can serve as pharmaceutically acceptable carriers include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, or potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, wool fat, sugars such as lactose, glucose and sucrose; starches such as corn starch and potato starch; cellulose and its derivatives such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc
  • a method for the treatment or lessening the severity of acute, chronic, neuropathic, or inflammatory pain, arthritis, migrane, cluster headaches, trigeminal neuralgia, herpetic neuralgia, general neuralgias, epilepsy or epilepsy conditions, neurodegenerative disorders, psychiatric disorders such as anxiety and depression, myotonia, arrythmia, movement disorders, neuroendocrine disorders, ataxia, multiple sclerosis, irritable bowel syndrome, or incontinence comprising administering an effective amount of a compound, or a pharmaceutically acceptable composition comprising a compound to a subject in need thereof.
  • a method for the treatment or lessening the severity of acute, chronic, neuropathic, or inflammatory pain comprising administering an effective amount of a compound or a pharmaceutically acceptable composition to a subject in need thereof.
  • an “effective amount” of the compound or pharmaceutically acceptable composition is that amount effective for treating or lessening the severity of one or more of acute, chronic, neuropathic, or inflammatory pain, epilepsy or epilepsy conditions, neurodegenerative disorders, psychiatric disorders such as anxiety and depression, myotonia, arrythmia, movement disorders, neuroendocrine disorders, ataxia, multiple sclerosis, irritable bowel syndrome, or incontinence.
  • the compounds and compositions, according to the method of the present invention may be administered using any amount and any route of administration effective for treating or lessening the severity of one or more of acute, chronic, neuropathic, or inflammatory pain, epilepsy or.
  • epilepsy conditions neurodegenerative disorders, psychiatric disorders such as anxiety and depression, myotonia, arrythmia, movement disorders, neuroendocrine disorders, ataxia, multiple sclerosis, irritable bowel syndrome, or incontinence.
  • the exact amount required will vary from subject to subject, depending on the species, age, and general condition of the subject, the severity of the infection, the particular agent, its mode of administration, and the like.
  • the compounds of the invention are preferably formulated in dosage unit form for ease of administration and uniformity of dosage.
  • dose unit form refers to a physically discrete unit of agent appropriate for the patient to be treated. It will be understood, however, that the total daily usage of the compounds and compositions of the present invention will be decided by the attending physician within the scope of sound medical judgment.
  • the specific effective dose level for any particular patient or organism will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific composition employed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed, and like factors well known in the medical arts.
  • patient means an animal, preferably a mammal, and most preferably a human.
  • compositions of this invention can be administered to humans and other animals orally, rectally, parenterally, intracisternally, intravaginally, intraperitoneally, topically (as by powders, ointments, or drops), bucally, as an oral or nasal spray, or the like, depending on the severity of the infection being treated.
  • the compounds of the invention may be administered orally or parenterally at dosage levels of about 0.01 mg/kg to about 50 mg/kg and preferably from about 1 mg/kg to about 25 mg/kg, of subject body weight per day, one or more times a day, to obtain the desired therapeutic effect.
  • Liquid dosage forms for oral administration include, but are not limited to, pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups and elixirs.
  • the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, dimethylformamide, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
  • the oral compositions can also include adjuvants such as, for example, water or other solvents, solubil
  • sterile injectable aqueous or oleaginous suspensions may be formulated according to the known art using suitable dispersing or wetting agents and suspending agents.
  • the sterile injectable preparation may also be a sterile injectable solution, suspension or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3-butanediol.
  • acceptable vehicles and solvents that may be employed are water, Ringer's solution, U.S.P. and isotonic sodium chloride solution.
  • sterile, fixed oils are conventionally employed as a solvent or suspending medium.
  • any bland fixed oil can be employed including synthetic mono- or diglycerides.
  • fatty acids such as oleic acid are used in the preparation of injectables.
  • the injectable formulations can be sterilized, for example, by filtration through a bacterial-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions which can be dissolved or dispersed in sterile water or other sterile injectable medium prior to use.
  • the rate of compound release can be controlled.
  • biodegradable polymers include poly(orthoesters) and poly(anhydrides).
  • Depot injectable formulations are also prepared by entrapping the compound in liposomes or microemulsions that are compatible with body tissues.
  • compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this invention with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
  • suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
  • Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules.
  • the active compound is mixed with at least one inert, pharmaceutically acceptable excipient or carrier such as sodium citrate or dicalcium phosphate and/or a) fillers or extenders such as starches, lactose, sucrose, glucose, mannitol, and silicic acid, b) binders such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinylpyrrolidinone, sucrose, and acacia, c) humectants such as glycerol, d) disintegrating agents such as agar--agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate, e) solution retarding agents such as paraffin, f) absorption accelerators such as quaternary ammonium compounds, g) wetting agents such as, for example, cetyl alcohol and g
  • Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like.
  • the solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings and other coatings well known in the pharmaceutical formulating art. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like.
  • the active compounds can also be in microencapsulated form with one or more excipients as noted above.
  • the solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings and other coatings well known in the pharmaceutical formulating art.
  • the active compound may be admixed with at least one inert diluent such as sucrose, lactose or starch.
  • Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose.
  • the dosage forms may also comprise buffering agents. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner.
  • buffering agents include polymeric substances and waxes.
  • Dosage forms for topical or transdermal administration of a compound of this invention include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants or patches.
  • the active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required.
  • Ophthalmic formulation, eardrops, and eye drops are also contemplated as being within the scope of this invention.
  • the present invention contemplates the use of transdermal patches, which have the added advantage of providing controlled delivery of a compound to the body.
  • Such dosage forms are prepared by dissolving or dispensing the compound in the proper medium.
  • Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel.
  • the compounds of the invention are useful as inhibitors of voltage-gated sodium ion channels or calcium channels, preferably N-type calcium channels.
  • the compounds and compositions of the invention are inhibitors of one or more of NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2, and thus, without wishing to be bound by any particular theory, the compounds and compositions are particularly useful for treating or lessening the severity of a disease, condition, or disorder where activation or hyperactivity of one or more of NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2 is implicated in the disease, condition, or disorder.
  • NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2 When activation or hyperactivity of NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2, is implicated in a particular disease, condition, or disorder, the disease, condition, or disorder may also be referred to as a “NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8 or NaV1.9-mediated disease, condition or disorder” or a “CaV2.2-mediated condition or disorder”.
  • the present invention provides a method for treating or lessening the severity of a disease, condition, or disorder where activation or hyperactivity of one or more of NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2 is implicated in the disease state.
  • the activity of a compound utilized in this invention as an inhibitor of NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2 may be assayed according to methods described generally in the Examples herein, or according to methods available to one of ordinary skill in the art.
  • compounds of the invention are useful as inhibitors of NaV1.8. In other embodiments, compounds of the invention are useful as inhibitors of NaV1.8 and CaV2.2. In still other embodiments, compounds of the invention are useful as inhibitors of CaV2.2.
  • the compounds and pharmaceutically acceptable compositions of the present invention can be employed in combination therapies, that is, the compounds and pharmaceutically acceptable compositions can be administered concurrently with, prior to, or subsequent to, one or more other desired therapeutics or medical procedures.
  • the particular combination of therapies (therapeutics or procedures) to employ in a combination regimen will take into account compatibility of the desired therapeutics and/or procedures and the desired therapeutic effect to be achieved.
  • the therapies employed may achieve a desired effect for the same disorder (for example, an inventive compound may be administered concurrently with another agent used to treat the same disorder), or they may achieve different effects (e.g., control of any adverse effects).
  • additional therapeutic agents that are normally administered to treat or prevent a particular disease, or condition are known as “appropriate for the disease, or condition, being treated”.
  • the amount of additional therapeutic agent present in the compositions of this invention will be no more than the amount that would normally be administered in a composition comprising that therapeutic agent as the only active agent.
  • the amount of additional therapeutic agent in the presently disclosed compositions will range from about 50% to 100% of the amount normally present in a composition comprising that agent as the only therapeutically active agent.
  • the present invention in another aspect, includes a composition for coating an implantable device comprising a compound of the present invention as described generally above, and in classes and subclasses herein, and a carrier suitable for coating said implantable device.
  • the present invention includes an implantable device coated with a composition comprising a compound of the present invention as described generally above, and in classes and subclasses herein, and a carrier suitable for coating said implantable device. Suitable coatings and the general preparation of coated implantable devices are described in U.S. Pat. Nos.
  • the coatings are typically biocompatible polymeric materials such as a hydrogel polymer, polymethyldisiloxane, polycaprolactone, polyethylene glycol, polylactic acid, ethylene vinyl acetate, and mixtures thereof.
  • the coatings may optionally be further covered by a suitable topcoat of fluorosilicone, polysaccarides, polyethylene glycol, phospholipids or combinations thereof to impart controlled release characteristics in the composition.
  • Another aspect of the invention relates to inhibiting NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2 activity in a biological sample or a patient, which method comprises administering to the patient, or contacting said biological sample with a compound of formula I or a composition comprising said compound.
  • biological sample includes, without limitation, cell cultures or extracts thereof; biopsied material obtained from a mammal or extracts thereof; and blood, saliva, urine, feces, semen, tears, or other body fluids or extracts thereof.
  • Inhibition of NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, NaV1.9, or CaV2.2 activity in a biological sample is useful for a variety of purposes that are known to one of skill in the art. Examples of such purposes include, but are not limited to, the study of sodium ion channels in biological and pathological phenomena; and the comparative evaluation of new sodium ion channel inhibitors.
  • a 5 mL microwave reaction vessel was charged with a mixture of 2 (50 mg, 0.22 mmol), phenylboronic acid (39 mg, 0.32 mmol), tetrakis(triphenylphosphine)-palladium(0) (25 mg, 0.02 mmol), sodium carbonate (0.55 mL, 0.22 mmol, 0.40 M aqueous solution), and acetonitrile (0.55 mL).
  • the vessel was sealed and heated, with stirring, at 150° C. for 10 minutes via microwave irradiation.
  • the precipitate was filtered and the residual solid was vacuum dried to obtain the intermediate pyrimidinone as a white solid (500 mg, 2.54 mmol).
  • the solution was heated via microwave to 170° C. for 5 minutes in a 5 mL microwave vessel.
  • the solution was purified by HPLC (10% to 99% CH 3 CN) to obtain 29 as a trifluoroacetic acid salt (33 mg, 0.08 mmol, 59% yield) as a white solid.
  • a stirring solution of 34 (10.0 g, 63.6 mmol), phosphorus oxychloride (25.0 mL), and N,N-dimethylaniline(17.0 g, 140 mmol) in a 200 mL three-necked round-bottomed flask equipped with a magnetic stirrer was heated at 80° C. for a period of 20 minutes.
  • the solution was concentrated under reduced pressure.
  • the residue was residue was poured into ice-water (300 g) and the mixture was basified with saturated aqueous NaHCO 3 solution.
  • the mixture was partitioned between CH 2 Cl 2 and water. The organic portion was dried (MgSO 4 ) and cooled to ⁇ 78° C.
  • the amide intermediate was added to a microwave vessel followed by the addition of CH 3 CN (0.50 mL), 2-(4,4,55-tetramethyl-[1,3,2]dioxaborolan-2-yl)-phenol (83 mg, 0.38 mmol) Pd(PPh 3 ) 4 (30.0 mg, 0.03 mmol), and sodium carbonate (0.50 mL, 0.40 M in H 2 O).
  • the mixture was heated via microwave irradiation at 170° C. for 5 minutes.
  • the mixture was filtered and the filtrate purified by HPLC (10% to 99% CH 3 CN) to obtain 37 as a trifluoroacetic acid salt (26 mg, 0.07 mmol, 23% yield) as a white solid.
  • Compounds of the invention are useful as antagonists of voltage-gated sodium ion channels. Antagonist properties of test compounds were assessed as follows. Cells expressing the NaV of interest were placed into microtiter plates. After an incubation period, the cells were stained with fluorescent dyes sensitive to the transmembrane potential. The test compounds were added to the microtiter plate. The cells were stimulated with either a chemical or electrical means to evoke a NaV dependent membrane potential change from unblocked channels, which was detected and measured with trans-membrane potential-sensitive dyes. Antagonists were detected as a decreased membrane potential response to the stimulus.
  • the optical membrane potential assay utilized voltage-sensitive FRET sensors described by Gonzalez and Tsien (See, Gonzalez, J. E. and R. Y.
  • CHO cells endogenously expressing a NaV1.2 type voltage-gated NaV are seeded in 96-well poly-lysine coated plates at 60,000 cells per well.
  • Other subtypes are performed in an analogous mode in a cell line expressing the NaV of interest.
  • R ⁇ ( t ) ( intensity 460 ⁇ ⁇ nm - background 460 ⁇ ⁇ nm ) ( intensity 580 ⁇ ⁇ nm - background 580 ⁇ ⁇ nm )
  • the data is further reduced by calculating the initial (R i ) and final (R f ) ratios. These are the average ratio values during part or all of the pre-stimulation period, and during sample points during the stimulation period.
  • the response to the stimulus R f /R i is then calculated.
  • baseline is 2-7 sec and final response is sampled at 15-24 sec.
  • Control responses are obtained by performing assays in the presence of a compound with the desired properties (positive control), such as tetracaine, and in the absence of pharmacological agents (negative control). Responses to the negative (N) and positive (P) controls are calculated as above.
  • the compound antagonist activity A is defined as:
  • CHO cells are grown in DMEM (Dulbecco's Modified Eagle Medium; GibcoBRL #10569-010) supplemented with 10% FBS (Fetal Bovine Serum, qualified; GibcoBRL #16140-071) and 1% Pen-Strep (Penicillin-Streptomycin; GibcoBRL #15140-122).
  • Cells are grown in vented cap flasks, in 90% humidity and 10% CO 2 , to 100% confluence. They are usually split by trypsinization 1:10 or 1:20, depending on scheduling needs, and grown for 2-3 days before the next split.
  • HEK293 cells stably expressing NaV1.3 are plated into 96-well microtiter plates. After an appropriate incubation period, the cells are stained with the voltage sensitive dyes CC2-DMPE/DiSBAC2(3) as follows.
  • 2 ⁇ CC2-DMPE 20 ⁇ M CC2-DMPE: 10 mM CC2-DMPE is vortexed with an equivalent volume of 10% pluronic, followed by vortexing in required amount of HBSS containing 10 mM HEPES. Each cell plate will require 5 mL of 2 ⁇ CC2-DMPE. 50 ⁇ L of 2 ⁇ CC2-DMPE is to wells containing washed cells, resulting in a 10 ⁇ M final staining concentration. The cells are stained for 30 minutes in the dark at RT.
  • ABSC1 6 ⁇ M DISBAC 2 (3) and 1 mM ABSC1: The required amount of 10 mM DISBAC 2 (3) is added to a 50 ml conical tube and mixed with 1 ⁇ L 10% pluronic for each mL of solution to be made and vortexed together. Then HBSS/HEPES is added to make up 2 ⁇ solution. Finally, the ABSC1 is added.
  • the 2 ⁇ DiSBAC 2 (3) solution can be used to solvate compound plates. Note that compound plates are made at 2 ⁇ drug concentration. Wash stained plate again, leaving residual volume of 50 ⁇ L. Add 50 ⁇ L/well of the 2 ⁇ DiSBAC 2 (3) w/ABSC1. Stain for 30 minutes in the dark at RT.
  • the electrical stimulation instrument and methods of use are described in ION Channel Assay Methods PCT/US01/21652, herein incorporated by reference.
  • the instrument comprises a microtiter plate handler, an optical system for exciting the coumarin dye while simultaneously recording the coumarin and oxonol emissions, a waveform generator, a current- or voltage-controlled amplifier, and a device for inserting electrodes in well. Under integrated computer control, this instrument passes user-programmed electrical stimulus protocols to cells within the wells of the microtiter plate.
  • R ⁇ ( t ) ( intensity 460 ⁇ ⁇ nm - background 460 ⁇ ⁇ nm ) ( intensity 580 ⁇ ⁇ nm - background 580 ⁇ ⁇ nm )
  • the data is further reduced by calculating the initial (R i ) and final (R f ) ratios. These are the average ratio values during part or all of the pre-stimulation period, and during sample points during the stimulation period.
  • the response to the stimulus R f /R i is then calculated.
  • Control responses are obtained by performing assays in the presence of a compound with the desired properties (positive control), such as tetracaine, and in the absence of pharmacological agents (negative control). Responses to the negative (N) and positive (P) controls are calculated as above.
  • the compound antagonist activity A is defined as:
  • A R - P N - P * 100.
  • R is the ratio response of the test compound.
  • Patch clamp electrophysiology was used to assess the efficacy and selectivity of sodium channel blockers in dorsal root ganglion neurons.
  • Rat neurons were isolated from the dorsal root ganglions and maintained in culture for 2 to 10 days in the presence of NGF (50 ng/ml) (culture media consisted of NeurobasalA supplemented with B27, glutamine and antibiotics). Small diameter neurons (nociceptors, 8-12 ⁇ m in diameter) have been visually identified and probed with fine tip glass electrodes connected to an amplifier (Axon Instruments).
  • the “voltage clamp” mode has been used to assess the compound's IC50 holding the cells at ⁇ 60 mV.
  • the “current clamp” mode has been employed to test the efficacy of the compounds in blocking action potential generation in response to current injections. The results of these experiments have contributed to the definition of the efficacy profile of the compounds.
  • TTX-resistant sodium currents were recorded from DRG somata using the whole-cell variation of the patch clamp technique. Recordings were made at room temperature ( ⁇ 22° C.) with thick walled borosilicate glass electrodes (WPI; resistance 3-4 M ⁇ ) using an Axopatch 200B amplifier (Axon Instruments). After establishing the whole-cell configuration, approximately 15 minutes were allowed for the pipette solution to equilibrate within the cell before beginning recording. Currents were lowpass filtered between 2-5 kHz and digitally sampled at 10 kHz. Series resistance was compensated 60-70% and was monitored continuously throughout the experiment. The liquid junction potential ( ⁇ 7 mV) between the intracellular pipette solution and the external recording solution was not accounted for in the data analysis. Test solutions were applied to the cells with a gravity driven fast perfusion system (SF-77; Warner Instruments).
  • SF-77 gravity driven fast perfusion system
  • Dose-response relationships were determined in voltage clamp mode by repeatedly depolarizing the cell from the experiment specific holding potential to a test potential of +10 mV once every 60 seconds. Blocking effects were allowed to plateau before proceeding to the next test concentration.
  • Extracellular solution (in mM): NaCl (138), CaCl 2 (1.26), KCl (5.33), KH 2 PO 4 (0.44), MgCl 2 (0.5), MgSO 4 (0.41), NaHCO 3 (4), Na 2 HPO 4 (0.3), glucose (5.6), HEPES (10), CdCl2 (0.4), NiCl2 (0.1), TTX (0.25 ⁇ 10 ⁇ 3 ).
  • Compounds of the invention are useful as antagonists of voltage-gated calcium ion channels. Antagonist properties of test compounds were assessed as follows. Cells expressing the CaV of interest were placed into microtiter plates. After an incubation period, the cells were stained with fluorescent dyes sensitive to the transmembrane potential. The test compounds were added to the microtiter plate. The cells were stimulated with electrical means to evoke a CaV dependent membrane potential change from unblocked channels, which was detected and measured with trans-membrane potential-sensitive dyes. Antagonists were detected as a decreased membrane potential response to the stimulus.
  • the optical membrane potential assay utilized voltage-sensitive FRET sensors described by Gonzalez and Tsien (See. Gonzalez, J. E. and R. Y.
  • HEK293 cells stably expressing CaV2.2 are plated into 96-well microtiter plates. After an appropriate incubation period, the cells are stained with the voltage sensitive dyes CC2-DMPE/DiSBAC2(3) as follows.
  • 2 ⁇ CC2-DMPE 20 ⁇ M CC2-DMPE: 10 mM CC2-DMPE is vortexed with an equivalent volume of 10% pluronic, followed by vortexing in required amount of HBSS containing 10 mM HEPES. Each cell plate will require 5 mL of 2 ⁇ CC2-DMPE. 50 ⁇ L of 2 ⁇ CC2-DMPE is added to wells containing washed cells, resulting in a 10 ⁇ M final staining concentration. The cells are stained for 30 minutes in the dark at RT.
  • 2 ⁇ CC2DMPE & DISBAC 6 (3) 8 ⁇ M CC2DMPE & 2.5 ⁇ M DISBAC 6 (3): Vortex together both dyes with an equivalent volume of 10% pluronic (in DMSO). Vortex in required amount of Bath X with beta-cyclodextrin. Each 96well cell plate will require 5 ml of 2 ⁇ CC2DMPE. Wash plate with ELx405 with Bath X, leaving a residual volume of 50 ⁇ L/well. Add 50 ⁇ L of 2 ⁇ CC2DMPE & DISBAC 6 (3) to each well. Stain for 30 minutes in the dark at RT.
  • the electrical stimulation instrument and methods of use are described in ION Channel Assay Methods PCT/US01/21652, herein incorporated by reference.
  • the instrument comprises a microtiter plate handler, an optical system for exciting the coumarin dye while simultaneously recording the coumarin and oxonol emissions, a waveform generator, a current- or voltage-controlled amplifier, and a device for inserting electrodes in well. Under integrated computer control, this instrument passes user-programmed electrical stimulus protocols to cells within the wells of the microtiter plate.
  • R ⁇ ( t ) ( intensity 460 ⁇ ⁇ nm - background 460 ⁇ ⁇ nm ) ( intensity 580 ⁇ ⁇ nm - background 580 ⁇ ⁇ nm )
  • the data is further reduced by calculating the initial (R i ) and final (R f ) ratios. These are the average ratio values during part or all of the pre-stimulation period, and during sample points during the stimulation period.
  • the response to the stimulus R f /R i is then calculated.
  • Control responses are obtained by performing assays in the presence of a compound with the desired properties (positive control), such as mibefradil, and in the absence of pharmacological agents (negative control). Responses to the negative (N) and positive (P) controls are calculated as above.
  • the compound antagonist activity A is defined as:
  • A R - P N - P * 100.
  • R is the ratio response of the test compound.
  • HEK293 cells expressing CaV2.2 have been visually identified and probed with fine tip glass electrodes connected to an amplifier (Axon Instruments).
  • the “voltage clamp” mode has been used to assess the compound's IC50 holding the cells at ⁇ 100 mV. The results of these experiments have contributed to the definition of the efficacy profile of the compounds.
  • CaV2.2 calcium currents were recorded from HEK293 cells using the whole-cell variation of the patch clamp technique. Recordings were made at room temperature ( ⁇ 22° C.) with thick walled borosilicate glass electrodes (WPI; resistance 3-4 M ⁇ ) using an Axopatch 200B amplifier (Axon Instruments). After establishing the whole-cell configuration, approximately 15 minutes were allowed for the pipette solution to equilibrate within the cell before beginning recording. Currents were lowpass filtered between 2-5 kHz and digitally sampled at 10 kHz. Series resistance was compensated 60-70% and was monitored continuously throughout the experiment. The liquid junction potential ( ⁇ 7 mV) between the intracellular pipette solution and the external recording solution was not accounted for in the data analysis. Test solutions were applied to the cells with a gravity driven fast perfusion system (SF-77; Warner Instruments).
  • SF-77 gravity driven fast perfusion system
  • Dose-response relationships were determined in voltage clamp mode by repeatedly depolarizing the cell from the experiment specific holding potential to a test potential of +20 mV for 50 ms at frequencies of 0.1, 1, 5, 10, 15, and 20 Hz. Blocking effects were allowed to plateau before proceeding to the next test concentration.
  • Extracellular solution (in mM): NaCl (138), BaCl 2 (10), KCl (5.33), KH 2 PO 4 (0.44), MgCl 2 (0.5), MgSO 4 (0.41), NaHCO 3 (4), Na 2 HPO 4 (0.3), glucose (5.6), HEPES (10).

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US20110003814A1 (en) * 2003-07-02 2011-01-06 Vertex Pharmaceuticals Incorporated Pyrimidines useful as modulators of voltage-gated ion channels
US8324220B2 (en) * 2003-07-02 2012-12-04 Vertex Pharmaceuticals Incorporated Pyrimidines useful as modulators of voltage-gated ion channels

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