US20100233095A1 - Conformationally dynamic peptides - Google Patents
Conformationally dynamic peptides Download PDFInfo
- Publication number
- US20100233095A1 US20100233095A1 US12/695,968 US69596810A US2010233095A1 US 20100233095 A1 US20100233095 A1 US 20100233095A1 US 69596810 A US69596810 A US 69596810A US 2010233095 A1 US2010233095 A1 US 2010233095A1
- Authority
- US
- United States
- Prior art keywords
- peptide
- peptide probe
- target protein
- probe
- conformation
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 108090000765 processed proteins & peptides Proteins 0.000 title claims abstract description 687
- 102000004196 processed proteins & peptides Human genes 0.000 title claims abstract description 71
- 108090000623 proteins and genes Proteins 0.000 claims abstract description 390
- 102000004169 proteins and genes Human genes 0.000 claims abstract description 389
- 238000000034 method Methods 0.000 claims abstract description 81
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims abstract description 66
- 201000010099 disease Diseases 0.000 claims abstract description 61
- 239000000523 sample Substances 0.000 claims description 483
- BBEAQIROQSPTKN-UHFFFAOYSA-N antipyrene Natural products C1=CC=C2C=CC3=CC=CC4=CC=C1C2=C43 BBEAQIROQSPTKN-UHFFFAOYSA-N 0.000 claims description 128
- 238000009739 binding Methods 0.000 claims description 88
- 230000027455 binding Effects 0.000 claims description 86
- 238000006467 substitution reaction Methods 0.000 claims description 84
- 235000018102 proteins Nutrition 0.000 claims description 82
- GVEPBJHOBDJJJI-UHFFFAOYSA-N fluoranthrene Natural products C1=CC(C2=CC=CC=C22)=C3C2=CC=CC3=C1 GVEPBJHOBDJJJI-UHFFFAOYSA-N 0.000 claims description 67
- 230000008859 change Effects 0.000 claims description 66
- 150000001413 amino acids Chemical group 0.000 claims description 58
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical group N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 claims description 40
- 125000003588 lysine group Chemical group [H]N([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])(N([H])[H])C(*)=O 0.000 claims description 37
- 230000001747 exhibiting effect Effects 0.000 claims description 35
- 125000005581 pyrene group Chemical group 0.000 claims description 30
- 238000007792 addition Methods 0.000 claims description 28
- 230000006229 amino acid addition Effects 0.000 claims description 27
- 238000012217 deletion Methods 0.000 claims description 27
- 230000037430 deletion Effects 0.000 claims description 27
- 102000009091 Amyloidogenic Proteins Human genes 0.000 claims description 26
- 108010048112 Amyloidogenic Proteins Proteins 0.000 claims description 26
- 230000003942 amyloidogenic effect Effects 0.000 claims description 23
- 230000003247 decreasing effect Effects 0.000 claims description 22
- SJQRQOKXQKVJGJ-UHFFFAOYSA-N 5-(2-aminoethylamino)naphthalene-1-sulfonic acid Chemical compound C1=CC=C2C(NCCN)=CC=CC2=C1S(O)(=O)=O SJQRQOKXQKVJGJ-UHFFFAOYSA-N 0.000 claims description 21
- WCKQPPQRFNHPRJ-UHFFFAOYSA-N 4-[[4-(dimethylamino)phenyl]diazenyl]benzoic acid Chemical compound C1=CC(N(C)C)=CC=C1N=NC1=CC=C(C(O)=O)C=C1 WCKQPPQRFNHPRJ-UHFFFAOYSA-N 0.000 claims description 20
- 125000000539 amino acid group Chemical group 0.000 claims description 20
- 229960002685 biotin Drugs 0.000 claims description 20
- 235000020958 biotin Nutrition 0.000 claims description 20
- 239000011616 biotin Substances 0.000 claims description 20
- 125000003295 alanine group Chemical group N[C@@H](C)C(=O)* 0.000 claims description 19
- 125000000291 glutamic acid group Chemical group N[C@@H](CCC(O)=O)C(=O)* 0.000 claims description 19
- 238000012360 testing method Methods 0.000 claims description 18
- 238000001727 in vivo Methods 0.000 claims description 17
- 108091000054 Prion Proteins 0.000 claims description 15
- 102000029797 Prion Human genes 0.000 claims description 15
- 239000000203 mixture Substances 0.000 claims description 13
- -1 cystallins Proteins 0.000 claims description 12
- 239000003814 drug Substances 0.000 claims description 11
- 239000007864 aqueous solution Substances 0.000 claims description 10
- 229940124597 therapeutic agent Drugs 0.000 claims description 10
- 125000001360 methionine group Chemical group N[C@@H](CCSC)C(=O)* 0.000 claims description 9
- 230000003278 mimic effect Effects 0.000 claims description 9
- 229920001184 polypeptide Polymers 0.000 claims description 9
- 238000001542 size-exclusion chromatography Methods 0.000 claims description 9
- 239000002202 Polyethylene glycol Substances 0.000 claims description 8
- 238000001042 affinity chromatography Methods 0.000 claims description 8
- 238000005119 centrifugation Methods 0.000 claims description 8
- 229920001223 polyethylene glycol Polymers 0.000 claims description 8
- 102220095970 rs761681478 Human genes 0.000 claims description 8
- 125000000487 histidyl group Chemical group [H]N([H])C(C(=O)O*)C([H])([H])C1=C([H])N([H])C([H])=N1 0.000 claims description 7
- 230000001590 oxidative effect Effects 0.000 claims description 7
- 230000009257 reactivity Effects 0.000 claims description 7
- 108010090849 Amyloid beta-Peptides Proteins 0.000 claims description 6
- 102000013455 Amyloid beta-Peptides Human genes 0.000 claims description 6
- 102220324707 rs375086772 Human genes 0.000 claims description 6
- 125000002038 D-arginyl group Chemical group N[C@@H](C(=O)*)CCCNC(=N)N 0.000 claims description 5
- 102220364518 c.101T>C Human genes 0.000 claims description 5
- 125000001295 dansyl group Chemical group [H]C1=C([H])C(N(C([H])([H])[H])C([H])([H])[H])=C2C([H])=C([H])C([H])=C(C2=C1[H])S(*)(=O)=O 0.000 claims description 5
- 238000003384 imaging method Methods 0.000 claims description 5
- 102200027013 rs121908272 Human genes 0.000 claims description 5
- 108010026424 tau Proteins Proteins 0.000 claims description 5
- 238000012546 transfer Methods 0.000 claims description 5
- 208000023105 Huntington disease Diseases 0.000 claims description 4
- 108010071690 Prealbumin Proteins 0.000 claims description 4
- 102000019197 Superoxide Dismutase Human genes 0.000 claims description 4
- 108010012715 Superoxide dismutase Proteins 0.000 claims description 4
- 108090000190 Thrombin Proteins 0.000 claims description 4
- 102000009190 Transthyretin Human genes 0.000 claims description 4
- 108090000185 alpha-Synuclein Proteins 0.000 claims description 4
- NOESYZHRGYRDHS-UHFFFAOYSA-N insulin Chemical compound N1C(=O)C(NC(=O)C(CCC(N)=O)NC(=O)C(CCC(O)=O)NC(=O)C(C(C)C)NC(=O)C(NC(=O)CN)C(C)CC)CSSCC(C(NC(CO)C(=O)NC(CC(C)C)C(=O)NC(CC=2C=CC(O)=CC=2)C(=O)NC(CCC(N)=O)C(=O)NC(CC(C)C)C(=O)NC(CCC(O)=O)C(=O)NC(CC(N)=O)C(=O)NC(CC=2C=CC(O)=CC=2)C(=O)NC(CSSCC(NC(=O)C(C(C)C)NC(=O)C(CC(C)C)NC(=O)C(CC=2C=CC(O)=CC=2)NC(=O)C(CC(C)C)NC(=O)C(C)NC(=O)C(CCC(O)=O)NC(=O)C(C(C)C)NC(=O)C(CC(C)C)NC(=O)C(CC=2NC=NC=2)NC(=O)C(CO)NC(=O)CNC2=O)C(=O)NCC(=O)NC(CCC(O)=O)C(=O)NC(CCCNC(N)=N)C(=O)NCC(=O)NC(CC=3C=CC=CC=3)C(=O)NC(CC=3C=CC=CC=3)C(=O)NC(CC=3C=CC(O)=CC=3)C(=O)NC(C(C)O)C(=O)N3C(CCC3)C(=O)NC(CCCCN)C(=O)NC(C)C(O)=O)C(=O)NC(CC(N)=O)C(O)=O)=O)NC(=O)C(C(C)CC)NC(=O)C(CO)NC(=O)C(C(C)O)NC(=O)C1CSSCC2NC(=O)C(CC(C)C)NC(=O)C(NC(=O)C(CCC(N)=O)NC(=O)C(CC(N)=O)NC(=O)C(NC(=O)C(N)CC=1C=CC=CC=1)C(C)C)CC1=CN=CN1 NOESYZHRGYRDHS-UHFFFAOYSA-N 0.000 claims description 4
- 238000002595 magnetic resonance imaging Methods 0.000 claims description 4
- 230000003647 oxidation Effects 0.000 claims description 4
- 238000007254 oxidation reaction Methods 0.000 claims description 4
- 229960004072 thrombin Drugs 0.000 claims description 4
- 102100022524 Alpha-1-antichymotrypsin Human genes 0.000 claims description 3
- 101800001288 Atrial natriuretic factor Proteins 0.000 claims description 3
- 102400001282 Atrial natriuretic peptide Human genes 0.000 claims description 3
- 101800001890 Atrial natriuretic peptide Proteins 0.000 claims description 3
- 102000004878 Gelsolin Human genes 0.000 claims description 3
- 108090001064 Gelsolin Proteins 0.000 claims description 3
- 102220605242 Heparan sulfate N-sulfotransferase 4_G29K_mutation Human genes 0.000 claims description 3
- 108010041872 Islet Amyloid Polypeptide Proteins 0.000 claims description 3
- 102000036770 Islet Amyloid Polypeptide Human genes 0.000 claims description 3
- 102000008763 Neurofilament Proteins Human genes 0.000 claims description 3
- 108010088373 Neurofilament Proteins Proteins 0.000 claims description 3
- 108010048233 Procalcitonin Proteins 0.000 claims description 3
- 108700028909 Serum Amyloid A Proteins 0.000 claims description 3
- 102000054727 Serum Amyloid A Human genes 0.000 claims description 3
- 108010091628 alpha 1-Antichymotrypsin Proteins 0.000 claims description 3
- 125000000637 arginyl group Chemical group N[C@@H](CCCNC(N)=N)C(=O)* 0.000 claims description 3
- 102000015736 beta 2-Microglobulin Human genes 0.000 claims description 3
- 108010081355 beta 2-Microglobulin Proteins 0.000 claims description 3
- NSQLIUXCMFBZME-MPVJKSABSA-N carperitide Chemical compound C([C@H]1C(=O)NCC(=O)NCC(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@H](C(NCC(=O)N[C@@H](C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CO)C(=O)NCC(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](CSSC[C@@H](C(=O)N1)NC(=O)[C@H](CO)NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)CO)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CO)C(=O)N[C@@H](CC=1C=CC=CC=1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CC=1C=CC(O)=CC=1)C(O)=O)=O)[C@@H](C)CC)C1=CC=CC=C1 NSQLIUXCMFBZME-MPVJKSABSA-N 0.000 claims description 3
- 238000002594 fluoroscopy Methods 0.000 claims description 3
- 238000009206 nuclear medicine Methods 0.000 claims description 3
- 238000012634 optical imaging Methods 0.000 claims description 3
- 238000002600 positron emission tomography Methods 0.000 claims description 3
- 239000002243 precursor Substances 0.000 claims description 3
- CWCXERYKLSEGEZ-KDKHKZEGSA-N procalcitonin Chemical compound C([C@@H](C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H]([C@@H](C)CC)C(=O)NCC(=O)N[C@@H](C(C)C)C(=O)NCC(=O)N[C@@H](C)C(=O)N1[C@@H](CCC1)C(=O)NCC(O)=O)[C@@H](C)O)NC(=O)[C@@H](NC(=O)[C@H](CC=1NC=NC=1)NC(=O)[C@H](CC=1C=CC=CC=1)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CC=1C=CC=CC=1)NC(=O)[C@H](CC(O)=O)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](NC(=O)[C@H](CC=1C=CC(O)=CC=1)NC(=O)[C@@H](NC(=O)CNC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCSC)NC(=O)[C@H]1NC(=O)[C@H]([C@@H](C)O)NC(=O)[C@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(N)=O)NC(=O)CNC(=O)[C@@H](N)CSSC1)[C@@H](C)O)[C@@H](C)O)[C@@H](C)O)C1=CC=CC=C1 CWCXERYKLSEGEZ-KDKHKZEGSA-N 0.000 claims description 3
- 230000008569 process Effects 0.000 claims description 3
- 238000002601 radiography Methods 0.000 claims description 3
- 102220149729 rs763469367 Human genes 0.000 claims description 3
- 238000002603 single-photon emission computed tomography Methods 0.000 claims description 3
- 238000003325 tomography Methods 0.000 claims description 3
- 238000002604 ultrasonography Methods 0.000 claims description 3
- 230000006269 (delayed) early viral mRNA transcription Effects 0.000 claims description 2
- NCYCYZXNIZJOKI-IOUUIBBYSA-N 11-cis-retinal Chemical compound O=C/C=C(\C)/C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C NCYCYZXNIZJOKI-IOUUIBBYSA-N 0.000 claims description 2
- 102000007592 Apolipoproteins Human genes 0.000 claims description 2
- 108010071619 Apolipoproteins Proteins 0.000 claims description 2
- 102000055006 Calcitonin Human genes 0.000 claims description 2
- 108060001064 Calcitonin Proteins 0.000 claims description 2
- 102100025064 Cellular tumor antigen p53 Human genes 0.000 claims description 2
- 102000008186 Collagen Human genes 0.000 claims description 2
- 108010035532 Collagen Proteins 0.000 claims description 2
- 108010061642 Cystatin C Proteins 0.000 claims description 2
- 102000012192 Cystatin C Human genes 0.000 claims description 2
- 201000003883 Cystic fibrosis Diseases 0.000 claims description 2
- 101710137044 Fibrinogen alpha chain Proteins 0.000 claims description 2
- 102400000524 Fibrinogen alpha chain Human genes 0.000 claims description 2
- 102000001554 Hemoglobins Human genes 0.000 claims description 2
- 108010054147 Hemoglobins Proteins 0.000 claims description 2
- 101000721661 Homo sapiens Cellular tumor antigen p53 Proteins 0.000 claims description 2
- 108060003951 Immunoglobulin Proteins 0.000 claims description 2
- 102000004877 Insulin Human genes 0.000 claims description 2
- 108090001061 Insulin Proteins 0.000 claims description 2
- 102000000853 LDL receptors Human genes 0.000 claims description 2
- 108010001831 LDL receptors Proteins 0.000 claims description 2
- 108010069013 Phenylalanine Hydroxylase Proteins 0.000 claims description 2
- 102100038223 Phenylalanine-4-hydroxylase Human genes 0.000 claims description 2
- 102000015499 Presenilins Human genes 0.000 claims description 2
- 108010050254 Presenilins Proteins 0.000 claims description 2
- 108090000820 Rhodopsin Proteins 0.000 claims description 2
- 102100040756 Rhodopsin Human genes 0.000 claims description 2
- 108010085377 beta-N-Acetylhexosaminidases Proteins 0.000 claims description 2
- 102000007478 beta-N-Acetylhexosaminidases Human genes 0.000 claims description 2
- BBBFJLBPOGFECG-VJVYQDLKSA-N calcitonin Chemical compound N([C@H](C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC=1NC=NC=1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC=1C=CC(O)=CC=1)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)NCC(=O)N[C@@H](CO)C(=O)NCC(=O)N[C@@H]([C@@H](C)O)C(=O)N1[C@@H](CCC1)C(N)=O)C(C)C)C(=O)[C@@H]1CSSC[C@H](N)C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)O)C(=O)N1 BBBFJLBPOGFECG-VJVYQDLKSA-N 0.000 claims description 2
- 229960004015 calcitonin Drugs 0.000 claims description 2
- 229920001436 collagen Polymers 0.000 claims description 2
- 239000012634 fragment Substances 0.000 claims description 2
- 125000003827 glycol group Chemical group 0.000 claims description 2
- 102000018358 immunoglobulin Human genes 0.000 claims description 2
- 229940072221 immunoglobulins Drugs 0.000 claims description 2
- 229940125396 insulin Drugs 0.000 claims description 2
- 102000013498 tau Proteins Human genes 0.000 claims description 2
- 102000003802 alpha-Synuclein Human genes 0.000 claims 1
- 108010064539 amyloid beta-protein (1-42) Proteins 0.000 description 61
- 235000001014 amino acid Nutrition 0.000 description 53
- 239000000178 monomer Substances 0.000 description 47
- 229940024606 amino acid Drugs 0.000 description 44
- 238000003556 assay Methods 0.000 description 41
- 230000003993 interaction Effects 0.000 description 40
- 125000003275 alpha amino acid group Chemical group 0.000 description 38
- 238000002866 fluorescence resonance energy transfer Methods 0.000 description 37
- 230000015572 biosynthetic process Effects 0.000 description 34
- 238000001514 detection method Methods 0.000 description 32
- 210000004899 c-terminal region Anatomy 0.000 description 27
- 239000000463 material Substances 0.000 description 21
- 208000024827 Alzheimer disease Diseases 0.000 description 20
- 208000024777 Prion disease Diseases 0.000 description 19
- 230000035772 mutation Effects 0.000 description 18
- 239000000835 fiber Substances 0.000 description 17
- RHQDFWAXVIIEBN-UHFFFAOYSA-N Trifluoroethanol Chemical compound OCC(F)(F)F RHQDFWAXVIIEBN-UHFFFAOYSA-N 0.000 description 16
- 238000002983 circular dichroism Methods 0.000 description 15
- 239000003795 chemical substances by application Substances 0.000 description 14
- KDXKERNSBIXSRK-UHFFFAOYSA-N Lysine Natural products NCCCCC(N)C(O)=O KDXKERNSBIXSRK-UHFFFAOYSA-N 0.000 description 12
- 230000002596 correlated effect Effects 0.000 description 12
- 238000000338 in vitro Methods 0.000 description 12
- 150000003220 pyrenes Chemical class 0.000 description 12
- PYWVYCXTNDRMGF-UHFFFAOYSA-N rhodamine B Chemical compound [Cl-].C=12C=CC(=[N+](CC)CC)C=C2OC2=CC(N(CC)CC)=CC=C2C=1C1=CC=CC=C1C(O)=O PYWVYCXTNDRMGF-UHFFFAOYSA-N 0.000 description 12
- 230000003381 solubilizing effect Effects 0.000 description 12
- 239000000758 substrate Substances 0.000 description 12
- 239000012099 Alexa Fluor family Substances 0.000 description 11
- 108010064397 amyloid beta-protein (1-40) Proteins 0.000 description 11
- 238000002372 labelling Methods 0.000 description 11
- 208000005145 Cerebral amyloid angiopathy Diseases 0.000 description 10
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 10
- 108010090804 Streptavidin Proteins 0.000 description 10
- 239000011324 bead Substances 0.000 description 10
- 230000002829 reductive effect Effects 0.000 description 10
- 150000003839 salts Chemical class 0.000 description 10
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 9
- 208000037259 Amyloid Plaque Diseases 0.000 description 9
- DHMQDGOQFOQNFH-UHFFFAOYSA-N Glycine Chemical compound NCC(O)=O DHMQDGOQFOQNFH-UHFFFAOYSA-N 0.000 description 9
- 241001465754 Metazoa Species 0.000 description 9
- 239000007850 fluorescent dye Substances 0.000 description 9
- WHUUTDBJXJRKMK-UHFFFAOYSA-N Glutamic acid Natural products OC(=O)C(N)CCC(O)=O WHUUTDBJXJRKMK-UHFFFAOYSA-N 0.000 description 8
- 238000004458 analytical method Methods 0.000 description 8
- 210000004556 brain Anatomy 0.000 description 8
- 239000000872 buffer Substances 0.000 description 8
- 230000000875 corresponding effect Effects 0.000 description 8
- 231100000673 dose–response relationship Toxicity 0.000 description 8
- 108091006047 fluorescent proteins Proteins 0.000 description 8
- 102000034287 fluorescent proteins Human genes 0.000 description 8
- 239000000243 solution Substances 0.000 description 8
- 230000001419 dependent effect Effects 0.000 description 7
- 235000013922 glutamic acid Nutrition 0.000 description 7
- 239000004220 glutamic acid Substances 0.000 description 7
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 6
- 208000020406 Creutzfeldt Jacob disease Diseases 0.000 description 6
- 208000003407 Creutzfeldt-Jakob Syndrome Diseases 0.000 description 6
- 208000010859 Creutzfeldt-Jakob disease Diseases 0.000 description 6
- 241000282412 Homo Species 0.000 description 6
- KDXKERNSBIXSRK-YFKPBYRVSA-N L-lysine Chemical compound NCCCC[C@H](N)C(O)=O KDXKERNSBIXSRK-YFKPBYRVSA-N 0.000 description 6
- 239000004472 Lysine Substances 0.000 description 6
- 101710138751 Major prion protein Proteins 0.000 description 6
- 208000018756 Variant Creutzfeldt-Jakob disease Diseases 0.000 description 6
- 238000004220 aggregation Methods 0.000 description 6
- CKLJMWTZIZZHCS-REOHCLBHSA-N aspartic acid group Chemical group N[C@@H](CC(=O)O)C(=O)O CKLJMWTZIZZHCS-REOHCLBHSA-N 0.000 description 6
- 230000006287 biotinylation Effects 0.000 description 6
- 238000007413 biotinylation Methods 0.000 description 6
- 208000005881 bovine spongiform encephalopathy Diseases 0.000 description 6
- 238000006243 chemical reaction Methods 0.000 description 6
- 230000005284 excitation Effects 0.000 description 6
- 125000003607 serino group Chemical group [H]N([H])[C@]([H])(C(=O)[*])C(O[H])([H])[H] 0.000 description 6
- 239000002904 solvent Substances 0.000 description 6
- 239000000126 substance Substances 0.000 description 6
- 230000001225 therapeutic effect Effects 0.000 description 6
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 6
- MTCFGRXMJLQNBG-REOHCLBHSA-N (2S)-2-Amino-3-hydroxypropansäure Chemical compound OC[C@H](N)C(O)=O MTCFGRXMJLQNBG-REOHCLBHSA-N 0.000 description 5
- HNDVDQJCIGZPNO-YFKPBYRVSA-N L-histidine Chemical compound OC(=O)[C@@H](N)CC1=CN=CN1 HNDVDQJCIGZPNO-YFKPBYRVSA-N 0.000 description 5
- 108010007288 PrPSc Proteins Proteins 0.000 description 5
- MTCFGRXMJLQNBG-UHFFFAOYSA-N Serine Natural products OCC(N)C(O)=O MTCFGRXMJLQNBG-UHFFFAOYSA-N 0.000 description 5
- 235000004279 alanine Nutrition 0.000 description 5
- 230000002490 cerebral effect Effects 0.000 description 5
- 208000017580 chronic wasting disease Diseases 0.000 description 5
- 230000000295 complement effect Effects 0.000 description 5
- 208000035475 disorder Diseases 0.000 description 5
- HNDVDQJCIGZPNO-UHFFFAOYSA-N histidine Natural products OC(=O)C(N)CC1=CN=CN1 HNDVDQJCIGZPNO-UHFFFAOYSA-N 0.000 description 5
- 208000010544 human prion disease Diseases 0.000 description 5
- 230000007246 mechanism Effects 0.000 description 5
- 239000003960 organic solvent Substances 0.000 description 5
- 239000008188 pellet Substances 0.000 description 5
- COLNVLDHVKWLRT-QMMMGPOBSA-N phenylalanine group Chemical group N[C@@H](CC1=CC=CC=C1)C(=O)O COLNVLDHVKWLRT-QMMMGPOBSA-N 0.000 description 5
- 125000001500 prolyl group Chemical group [H]N1C([H])(C(=O)[*])C([H])([H])C([H])([H])C1([H])[H] 0.000 description 5
- 239000011780 sodium chloride Substances 0.000 description 5
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 5
- JKMHFZQWWAIEOD-UHFFFAOYSA-N 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid Chemical compound OCC[NH+]1CCN(CCS([O-])(=O)=O)CC1 JKMHFZQWWAIEOD-UHFFFAOYSA-N 0.000 description 4
- AUUIARVPJHGTSA-UHFFFAOYSA-N 3-(aminomethyl)chromen-2-one Chemical compound C1=CC=C2OC(=O)C(CN)=CC2=C1 AUUIARVPJHGTSA-UHFFFAOYSA-N 0.000 description 4
- HSHNITRMYYLLCV-UHFFFAOYSA-N 4-methylumbelliferone Chemical compound C1=C(O)C=CC2=C1OC(=O)C=C2C HSHNITRMYYLLCV-UHFFFAOYSA-N 0.000 description 4
- NJYVEMPWNAYQQN-UHFFFAOYSA-N 5-carboxyfluorescein Chemical compound C12=CC=C(O)C=C2OC2=CC(O)=CC=C2C21OC(=O)C1=CC(C(=O)O)=CC=C21 NJYVEMPWNAYQQN-UHFFFAOYSA-N 0.000 description 4
- YMZMTOFQCVHHFB-UHFFFAOYSA-N 5-carboxytetramethylrhodamine Chemical compound C=12C=CC(N(C)C)=CC2=[O+]C2=CC(N(C)C)=CC=C2C=1C1=CC=C(C(O)=O)C=C1C([O-])=O YMZMTOFQCVHHFB-UHFFFAOYSA-N 0.000 description 4
- 102000014303 Amyloid beta-Protein Precursor Human genes 0.000 description 4
- 108010079054 Amyloid beta-Protein Precursor Proteins 0.000 description 4
- 206010061818 Disease progression Diseases 0.000 description 4
- 239000004471 Glycine Substances 0.000 description 4
- QNAYBMKLOCPYGJ-REOHCLBHSA-N L-alanine Chemical compound C[C@H](N)C(O)=O QNAYBMKLOCPYGJ-REOHCLBHSA-N 0.000 description 4
- 102100025818 Major prion protein Human genes 0.000 description 4
- KPKZJLCSROULON-QKGLWVMZSA-N Phalloidin Chemical compound N1C(=O)[C@@H]([C@@H](O)C)NC(=O)[C@H](C)NC(=O)[C@H](C[C@@](C)(O)CO)NC(=O)[C@H](C2)NC(=O)[C@H](C)NC(=O)[C@@H]3C[C@H](O)CN3C(=O)[C@@H]1CSC1=C2C2=CC=CC=C2N1 KPKZJLCSROULON-QKGLWVMZSA-N 0.000 description 4
- WCUXLLCKKVVCTQ-UHFFFAOYSA-M Potassium chloride Chemical compound [Cl-].[K+] WCUXLLCKKVVCTQ-UHFFFAOYSA-M 0.000 description 4
- 108010064571 PrPC Proteins Proteins 0.000 description 4
- 102220538768 Superoxide dismutase [Cu-Zn]_E22G_mutation Human genes 0.000 description 4
- 239000007983 Tris buffer Substances 0.000 description 4
- MQMYRABGDSRTGR-UHFFFAOYSA-N [C].C1=CC=C2C=CC3=CC=CC4=CC=C1C2=C43 Chemical group [C].C1=CC=C2C=CC3=CC=CC4=CC=C1C2=C43 MQMYRABGDSRTGR-UHFFFAOYSA-N 0.000 description 4
- 108010004469 allophycocyanin Proteins 0.000 description 4
- DEGAKNSWVGKMLS-UHFFFAOYSA-N calcein Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC(CN(CC(O)=O)CC(O)=O)=C(O)C=C1OC1=C2C=C(CN(CC(O)=O)CC(=O)O)C(O)=C1 DEGAKNSWVGKMLS-UHFFFAOYSA-N 0.000 description 4
- 238000007796 conventional method Methods 0.000 description 4
- 230000005750 disease progression Effects 0.000 description 4
- 230000000694 effects Effects 0.000 description 4
- 238000002189 fluorescence spectrum Methods 0.000 description 4
- 230000006870 function Effects 0.000 description 4
- 239000000499 gel Substances 0.000 description 4
- 238000000126 in silico method Methods 0.000 description 4
- 238000011503 in vivo imaging Methods 0.000 description 4
- 208000015181 infectious disease Diseases 0.000 description 4
- FNEZBBILNYNQGC-UHFFFAOYSA-N methyl 2-(3,6-diamino-9h-xanthen-9-yl)benzoate Chemical compound COC(=O)C1=CC=CC=C1C1C2=CC=C(N)C=C2OC2=CC(N)=CC=C21 FNEZBBILNYNQGC-UHFFFAOYSA-N 0.000 description 4
- 229960002378 oftasceine Drugs 0.000 description 4
- 230000003287 optical effect Effects 0.000 description 4
- 238000010791 quenching Methods 0.000 description 4
- 230000004044 response Effects 0.000 description 4
- 102200131541 rs121912450 Human genes 0.000 description 4
- 102200158871 rs33955330 Human genes 0.000 description 4
- 208000008864 scrapie Diseases 0.000 description 4
- QZAYGJVTTNCVMB-UHFFFAOYSA-N serotonin Chemical compound C1=C(O)C=C2C(CCN)=CNC2=C1 QZAYGJVTTNCVMB-UHFFFAOYSA-N 0.000 description 4
- 230000011664 signaling Effects 0.000 description 4
- 210000001519 tissue Anatomy 0.000 description 4
- 238000011282 treatment Methods 0.000 description 4
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 4
- 208000019553 vascular disease Diseases 0.000 description 4
- 238000005406 washing Methods 0.000 description 4
- BGWLYQZDNFIFRX-UHFFFAOYSA-N 5-[3-[2-[3-(3,8-diamino-6-phenylphenanthridin-5-ium-5-yl)propylamino]ethylamino]propyl]-6-phenylphenanthridin-5-ium-3,8-diamine;dichloride Chemical compound [Cl-].[Cl-].C=1C(N)=CC=C(C2=CC=C(N)C=C2[N+]=2CCCNCCNCCC[N+]=3C4=CC(N)=CC=C4C4=CC=C(N)C=C4C=3C=3C=CC=CC=3)C=1C=2C1=CC=CC=C1 BGWLYQZDNFIFRX-UHFFFAOYSA-N 0.000 description 3
- BZTDTCNHAFUJOG-UHFFFAOYSA-N 6-carboxyfluorescein Chemical compound C12=CC=C(O)C=C2OC2=CC(O)=CC=C2C11OC(=O)C2=CC=C(C(=O)O)C=C21 BZTDTCNHAFUJOG-UHFFFAOYSA-N 0.000 description 3
- IHHSSHCBRVYGJX-UHFFFAOYSA-N 6-chloro-2-methoxyacridin-9-amine Chemical compound C1=C(Cl)C=CC2=C(N)C3=CC(OC)=CC=C3N=C21 IHHSSHCBRVYGJX-UHFFFAOYSA-N 0.000 description 3
- 102100026882 Alpha-synuclein Human genes 0.000 description 3
- 102000004190 Enzymes Human genes 0.000 description 3
- 108090000790 Enzymes Proteins 0.000 description 3
- 201000011240 Frontotemporal dementia Diseases 0.000 description 3
- WHUUTDBJXJRKMK-VKHMYHEASA-N L-glutamic acid Chemical compound OC(=O)[C@@H](N)CCC(O)=O WHUUTDBJXJRKMK-VKHMYHEASA-N 0.000 description 3
- AGPKZVBTJJNPAG-WHFBIAKZSA-N L-isoleucine Chemical compound CC[C@H](C)[C@H](N)C(O)=O AGPKZVBTJJNPAG-WHFBIAKZSA-N 0.000 description 3
- OUYCCCASQSFEME-QMMMGPOBSA-N L-tyrosine Chemical compound OC(=O)[C@@H](N)CC1=CC=C(O)C=C1 OUYCCCASQSFEME-QMMMGPOBSA-N 0.000 description 3
- 108091034117 Oligonucleotide Proteins 0.000 description 3
- 108091005804 Peptidases Proteins 0.000 description 3
- 102000035195 Peptidases Human genes 0.000 description 3
- 239000004365 Protease Substances 0.000 description 3
- AUNGANRZJHBGPY-SCRDCRAPSA-N Riboflavin Chemical compound OC[C@@H](O)[C@@H](O)[C@@H](O)CN1C=2C=C(C)C(C)=CC=2N=C2C1=NC(=O)NC2=O AUNGANRZJHBGPY-SCRDCRAPSA-N 0.000 description 3
- PJANXHGTPQOBST-VAWYXSNFSA-N Stilbene Natural products C=1C=CC=CC=1/C=C/C1=CC=CC=C1 PJANXHGTPQOBST-VAWYXSNFSA-N 0.000 description 3
- 125000002252 acyl group Chemical group 0.000 description 3
- 125000003342 alkenyl group Chemical group 0.000 description 3
- 125000000217 alkyl group Chemical group 0.000 description 3
- 125000000304 alkynyl group Chemical group 0.000 description 3
- VREFGVBLTWBCJP-UHFFFAOYSA-N alprazolam Chemical compound C12=CC(Cl)=CC=C2N2C(C)=NN=C2CN=C1C1=CC=CC=C1 VREFGVBLTWBCJP-UHFFFAOYSA-N 0.000 description 3
- 150000001412 amines Chemical group 0.000 description 3
- 125000003277 amino group Chemical group 0.000 description 3
- 230000003941 amyloidogenesis Effects 0.000 description 3
- 238000013459 approach Methods 0.000 description 3
- 235000003704 aspartic acid Nutrition 0.000 description 3
- OQFSQFPPLPISGP-UHFFFAOYSA-N beta-carboxyaspartic acid Natural products OC(=O)C(N)C(C(O)=O)C(O)=O OQFSQFPPLPISGP-UHFFFAOYSA-N 0.000 description 3
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 description 3
- 210000004027 cell Anatomy 0.000 description 3
- 230000021615 conjugation Effects 0.000 description 3
- 230000001276 controlling effect Effects 0.000 description 3
- 230000007423 decrease Effects 0.000 description 3
- 206010012601 diabetes mellitus Diseases 0.000 description 3
- 238000003745 diagnosis Methods 0.000 description 3
- YJHDFAAFYNRKQE-YHPRVSEPSA-L disodium;5-[[4-anilino-6-[bis(2-hydroxyethyl)amino]-1,3,5-triazin-2-yl]amino]-2-[(e)-2-[4-[[4-anilino-6-[bis(2-hydroxyethyl)amino]-1,3,5-triazin-2-yl]amino]-2-sulfonatophenyl]ethenyl]benzenesulfonate Chemical compound [Na+].[Na+].N=1C(NC=2C=C(C(\C=C\C=3C(=CC(NC=4N=C(N=C(NC=5C=CC=CC=5)N=4)N(CCO)CCO)=CC=3)S([O-])(=O)=O)=CC=2)S([O-])(=O)=O)=NC(N(CCO)CCO)=NC=1NC1=CC=CC=C1 YJHDFAAFYNRKQE-YHPRVSEPSA-L 0.000 description 3
- 229940088598 enzyme Drugs 0.000 description 3
- 108010021843 fluorescent protein 583 Proteins 0.000 description 3
- 230000002209 hydrophobic effect Effects 0.000 description 3
- 238000011534 incubation Methods 0.000 description 3
- 238000002347 injection Methods 0.000 description 3
- 239000007924 injection Substances 0.000 description 3
- 125000001909 leucine group Chemical group [H]N(*)C(C(*)=O)C([H])([H])C(C([H])([H])[H])C([H])([H])[H] 0.000 description 3
- 238000012544 monitoring process Methods 0.000 description 3
- 230000001537 neural effect Effects 0.000 description 3
- 230000000171 quenching effect Effects 0.000 description 3
- 239000011541 reaction mixture Substances 0.000 description 3
- 229910052594 sapphire Inorganic materials 0.000 description 3
- 239000010980 sapphire Substances 0.000 description 3
- 238000001228 spectrum Methods 0.000 description 3
- PJANXHGTPQOBST-UHFFFAOYSA-N stilbene Chemical compound C=1C=CC=CC=1C=CC1=CC=CC=C1 PJANXHGTPQOBST-UHFFFAOYSA-N 0.000 description 3
- 235000021286 stilbenes Nutrition 0.000 description 3
- 230000002792 vascular Effects 0.000 description 3
- 108091005957 yellow fluorescent proteins Proteins 0.000 description 3
- VGIRNWJSIRVFRT-UHFFFAOYSA-N 2',7'-difluorofluorescein Chemical compound OC(=O)C1=CC=CC=C1C1=C2C=C(F)C(=O)C=C2OC2=CC(O)=C(F)C=C21 VGIRNWJSIRVFRT-UHFFFAOYSA-N 0.000 description 2
- PRDFBSVERLRRMY-UHFFFAOYSA-N 2'-(4-ethoxyphenyl)-5-(4-methylpiperazin-1-yl)-2,5'-bibenzimidazole Chemical compound C1=CC(OCC)=CC=C1C1=NC2=CC=C(C=3NC4=CC(=CC=C4N=3)N3CCN(C)CC3)C=C2N1 PRDFBSVERLRRMY-UHFFFAOYSA-N 0.000 description 2
- XDFNWJDGWJVGGN-UHFFFAOYSA-N 2-(2,7-dichloro-3,6-dihydroxy-9h-xanthen-9-yl)benzoic acid Chemical compound OC(=O)C1=CC=CC=C1C1C2=CC(Cl)=C(O)C=C2OC2=CC(O)=C(Cl)C=C21 XDFNWJDGWJVGGN-UHFFFAOYSA-N 0.000 description 2
- PXBFMLJZNCDSMP-UHFFFAOYSA-N 2-Aminobenzamide Chemical compound NC(=O)C1=CC=CC=C1N PXBFMLJZNCDSMP-UHFFFAOYSA-N 0.000 description 2
- LAXVMANLDGWYJP-UHFFFAOYSA-N 2-amino-5-(2-aminoethyl)naphthalene-1-sulfonic acid Chemical compound NC1=CC=C2C(CCN)=CC=CC2=C1S(O)(=O)=O LAXVMANLDGWYJP-UHFFFAOYSA-N 0.000 description 2
- ZVDGOJFPFMINBM-UHFFFAOYSA-N 3-(6-methoxyquinolin-1-ium-1-yl)propane-1-sulfonate Chemical compound [O-]S(=O)(=O)CCC[N+]1=CC=CC2=CC(OC)=CC=C21 ZVDGOJFPFMINBM-UHFFFAOYSA-N 0.000 description 2
- NJIRSTSECXKPCO-UHFFFAOYSA-M 3-[n-methyl-4-[2-(1,3,3-trimethylindol-1-ium-2-yl)ethenyl]anilino]propanenitrile;chloride Chemical compound [Cl-].C1=CC(N(CCC#N)C)=CC=C1\C=C\C1=[N+](C)C2=CC=CC=C2C1(C)C NJIRSTSECXKPCO-UHFFFAOYSA-M 0.000 description 2
- MJKVTPMWOKAVMS-UHFFFAOYSA-N 3-hydroxy-1-benzopyran-2-one Chemical compound C1=CC=C2OC(=O)C(O)=CC2=C1 MJKVTPMWOKAVMS-UHFFFAOYSA-N 0.000 description 2
- BUJRUSRXHJKUQE-UHFFFAOYSA-N 5-carboxy-X-rhodamine triethylammonium salt Chemical compound CC[NH+](CC)CC.[O-]C(=O)C1=CC(C(=O)[O-])=CC=C1C1=C(C=C2C3=C4CCCN3CCC2)C4=[O+]C2=C1C=C1CCCN3CCCC2=C13 BUJRUSRXHJKUQE-UHFFFAOYSA-N 0.000 description 2
- VWOLRKMFAJUZGM-UHFFFAOYSA-N 6-carboxyrhodamine 6G Chemical compound [Cl-].C=12C=C(C)C(NCC)=CC2=[O+]C=2C=C(NCC)C(C)=CC=2C=1C1=CC(C(O)=O)=CC=C1C(=O)OCC VWOLRKMFAJUZGM-UHFFFAOYSA-N 0.000 description 2
- YXHLJMWYDTXDHS-IRFLANFNSA-N 7-aminoactinomycin D Chemical compound C[C@H]1OC(=O)[C@H](C(C)C)N(C)C(=O)CN(C)C(=O)[C@@H]2CCCN2C(=O)[C@@H](C(C)C)NC(=O)[C@H]1NC(=O)C1=C(N)C(=O)C(C)=C2OC(C(C)=C(N)C=C3C(=O)N[C@@H]4C(=O)N[C@@H](C(N5CCC[C@H]5C(=O)N(C)CC(=O)N(C)[C@@H](C(C)C)C(=O)O[C@@H]4C)=O)C(C)C)=C3N=C21 YXHLJMWYDTXDHS-IRFLANFNSA-N 0.000 description 2
- 108700012813 7-aminoactinomycin D Proteins 0.000 description 2
- MEMQQZHHXCOKGG-UHFFFAOYSA-N 8-benzyl-2-[(4-fluorophenyl)methyl]-6-(4-hydroxyphenyl)imidazo[1,2-a]pyrazin-3-ol Chemical compound Oc1c(Cc2ccc(F)cc2)nc2c(Cc3ccccc3)nc(cn12)-c1ccc(O)cc1 MEMQQZHHXCOKGG-UHFFFAOYSA-N 0.000 description 2
- QTBSBXVTEAMEQO-UHFFFAOYSA-M Acetate Chemical compound CC([O-])=O QTBSBXVTEAMEQO-UHFFFAOYSA-M 0.000 description 2
- 108010088751 Albumins Proteins 0.000 description 2
- 102000009027 Albumins Human genes 0.000 description 2
- 108090001008 Avidin Proteins 0.000 description 2
- 241000283690 Bos taurus Species 0.000 description 2
- 125000001433 C-terminal amino-acid group Chemical group 0.000 description 2
- OYPRJOBELJOOCE-UHFFFAOYSA-N Calcium Chemical compound [Ca] OYPRJOBELJOOCE-UHFFFAOYSA-N 0.000 description 2
- 241000283707 Capra Species 0.000 description 2
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 2
- 108091005941 EBFP Proteins 0.000 description 2
- 108091005942 ECFP Proteins 0.000 description 2
- OZLGRUXZXMRXGP-UHFFFAOYSA-N Fluo-3 Chemical compound CC1=CC=C(N(CC(O)=O)CC(O)=O)C(OCCOC=2C(=CC=C(C=2)C2=C3C=C(Cl)C(=O)C=C3OC3=CC(O)=C(Cl)C=C32)N(CC(O)=O)CC(O)=O)=C1 OZLGRUXZXMRXGP-UHFFFAOYSA-N 0.000 description 2
- 102220566469 GDNF family receptor alpha-1_S65T_mutation Human genes 0.000 description 2
- 102220566451 GDNF family receptor alpha-1_Y66H_mutation Human genes 0.000 description 2
- 101001073409 Homo sapiens Retrotransposon-derived protein PEG10 Proteins 0.000 description 2
- 108010001336 Horseradish Peroxidase Proteins 0.000 description 2
- DCXYFEDJOCDNAF-REOHCLBHSA-N L-asparagine Chemical compound OC(=O)[C@@H](N)CC(N)=O DCXYFEDJOCDNAF-REOHCLBHSA-N 0.000 description 2
- ZDXPYRJPNDTMRX-VKHMYHEASA-N L-glutamine Chemical compound OC(=O)[C@@H](N)CCC(N)=O ZDXPYRJPNDTMRX-VKHMYHEASA-N 0.000 description 2
- ROHFNLRQFUQHCH-YFKPBYRVSA-N L-leucine Chemical compound CC(C)C[C@H](N)C(O)=O ROHFNLRQFUQHCH-YFKPBYRVSA-N 0.000 description 2
- FGBAVQUHSKYMTC-UHFFFAOYSA-M LDS 751 dye Chemical compound [O-]Cl(=O)(=O)=O.C1=CC2=CC(N(C)C)=CC=C2[N+](CC)=C1C=CC=CC1=CC=C(N(C)C)C=C1 FGBAVQUHSKYMTC-UHFFFAOYSA-M 0.000 description 2
- ROHFNLRQFUQHCH-UHFFFAOYSA-N Leucine Natural products CC(C)CC(N)C(O)=O ROHFNLRQFUQHCH-UHFFFAOYSA-N 0.000 description 2
- 241000699666 Mus <mouse, genus> Species 0.000 description 2
- 102220606690 Neurotrimin_D23N_mutation Human genes 0.000 description 2
- YHIPILPTUVMWQT-UHFFFAOYSA-N Oplophorus luciferin Chemical compound C1=CC(O)=CC=C1CC(C(N1C=C(N2)C=3C=CC(O)=CC=3)=O)=NC1=C2CC1=CC=CC=C1 YHIPILPTUVMWQT-UHFFFAOYSA-N 0.000 description 2
- 229910019142 PO4 Inorganic materials 0.000 description 2
- 208000018737 Parkinson disease Diseases 0.000 description 2
- 241001494479 Pecora Species 0.000 description 2
- 108010009711 Phalloidine Proteins 0.000 description 2
- 108010004729 Phycoerythrin Proteins 0.000 description 2
- 208000000609 Pick Disease of the Brain Diseases 0.000 description 2
- 206010035226 Plasma cell myeloma Diseases 0.000 description 2
- 102100035844 Retrotransposon-derived protein PEG10 Human genes 0.000 description 2
- 108091005971 Wild-type GFP Proteins 0.000 description 2
- 230000002159 abnormal effect Effects 0.000 description 2
- 239000002253 acid Substances 0.000 description 2
- PEJLNXHANOHNSU-UHFFFAOYSA-N acridine-3,6-diamine;10-methylacridin-10-ium-3,6-diamine;chloride Chemical compound [Cl-].C1=CC(N)=CC2=NC3=CC(N)=CC=C3C=C21.C1=C(N)C=C2[N+](C)=C(C=C(N)C=C3)C3=CC2=C1 PEJLNXHANOHNSU-UHFFFAOYSA-N 0.000 description 2
- 230000002776 aggregation Effects 0.000 description 2
- OWMVSZAMULFTJU-UHFFFAOYSA-N bis-tris Chemical compound OCCN(CCO)C(CO)(CO)CO OWMVSZAMULFTJU-UHFFFAOYSA-N 0.000 description 2
- 108091005948 blue fluorescent proteins Proteins 0.000 description 2
- 230000003139 buffering effect Effects 0.000 description 2
- 239000011575 calcium Substances 0.000 description 2
- 229910052791 calcium Inorganic materials 0.000 description 2
- 210000003169 central nervous system Anatomy 0.000 description 2
- 210000001175 cerebrospinal fluid Anatomy 0.000 description 2
- TUESWZZJYCLFNL-DAFODLJHSA-N chembl1301 Chemical compound C1=CC(C(=N)N)=CC=C1\C=C\C1=CC=C(C(N)=N)C=C1O TUESWZZJYCLFNL-DAFODLJHSA-N 0.000 description 2
- 150000003841 chloride salts Chemical class 0.000 description 2
- 239000000470 constituent Substances 0.000 description 2
- ZYGHJZDHTFUPRJ-UHFFFAOYSA-N coumarin Chemical compound C1=CC=C2OC(=O)C=CC2=C1 ZYGHJZDHTFUPRJ-UHFFFAOYSA-N 0.000 description 2
- GLNDAGDHSLMOKX-UHFFFAOYSA-N coumarin 120 Chemical compound C1=C(N)C=CC2=C1OC(=O)C=C2C GLNDAGDHSLMOKX-UHFFFAOYSA-N 0.000 description 2
- DTPCFIHYWYONMD-UHFFFAOYSA-N decaethylene glycol Chemical compound OCCOCCOCCOCCOCCOCCOCCOCCOCCOCCO DTPCFIHYWYONMD-UHFFFAOYSA-N 0.000 description 2
- 238000013461 design Methods 0.000 description 2
- GFZPJHFJZGRWMQ-UHFFFAOYSA-M diOC18(3) dye Chemical compound [O-]Cl(=O)(=O)=O.O1C2=CC=CC=C2[N+](CCCCCCCCCCCCCCCCCC)=C1C=CC=C1N(CCCCCCCCCCCCCCCCCC)C2=CC=CC=C2O1 GFZPJHFJZGRWMQ-UHFFFAOYSA-M 0.000 description 2
- JVXZRNYCRFIEGV-UHFFFAOYSA-M dilC18(3) dye Chemical compound [O-]Cl(=O)(=O)=O.CC1(C)C2=CC=CC=C2N(CCCCCCCCCCCCCCCCCC)C1=CC=CC1=[N+](CCCCCCCCCCCCCCCCCC)C2=CC=CC=C2C1(C)C JVXZRNYCRFIEGV-UHFFFAOYSA-M 0.000 description 2
- OOYIOIOOWUGAHD-UHFFFAOYSA-L disodium;2',4',5',7'-tetrabromo-4,5,6,7-tetrachloro-3-oxospiro[2-benzofuran-1,9'-xanthene]-3',6'-diolate Chemical compound [Na+].[Na+].O1C(=O)C(C(=C(Cl)C(Cl)=C2Cl)Cl)=C2C21C1=CC(Br)=C([O-])C(Br)=C1OC1=C(Br)C([O-])=C(Br)C=C21 OOYIOIOOWUGAHD-UHFFFAOYSA-L 0.000 description 2
- 238000009826 distribution Methods 0.000 description 2
- VYFYYTLLBUKUHU-UHFFFAOYSA-N dopamine Chemical compound NCCC1=CC=C(O)C(O)=C1 VYFYYTLLBUKUHU-UHFFFAOYSA-N 0.000 description 2
- 239000000975 dye Substances 0.000 description 2
- 239000010976 emerald Substances 0.000 description 2
- 229910052876 emerald Inorganic materials 0.000 description 2
- IINNWAYUJNWZRM-UHFFFAOYSA-L erythrosin B Chemical compound [Na+].[Na+].[O-]C(=O)C1=CC=CC=C1C1=C2C=C(I)C(=O)C(I)=C2OC2=C(I)C([O-])=C(I)C=C21 IINNWAYUJNWZRM-UHFFFAOYSA-L 0.000 description 2
- 150000002148 esters Chemical class 0.000 description 2
- 230000007717 exclusion Effects 0.000 description 2
- 201000006061 fatal familial insomnia Diseases 0.000 description 2
- GNBHRKFJIUUOQI-UHFFFAOYSA-N fluorescein Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 GNBHRKFJIUUOQI-UHFFFAOYSA-N 0.000 description 2
- DVGHHMFBFOTGLM-UHFFFAOYSA-L fluorogold Chemical compound F[Au][Au]F DVGHHMFBFOTGLM-UHFFFAOYSA-L 0.000 description 2
- 210000001652 frontal lobe Anatomy 0.000 description 2
- YFHXZQPUBCBNIP-UHFFFAOYSA-N fura-2 Chemical compound CC1=CC=C(N(CC(O)=O)CC(O)=O)C(OCCOC=2C(=CC=3OC(=CC=3C=2)C=2OC(=CN=2)C(O)=O)N(CC(O)=O)CC(O)=O)=C1 YFHXZQPUBCBNIP-UHFFFAOYSA-N 0.000 description 2
- 102000037865 fusion proteins Human genes 0.000 description 2
- 108020001507 fusion proteins Proteins 0.000 description 2
- 125000003630 glycyl group Chemical group [H]N([H])C([H])([H])C(*)=O 0.000 description 2
- 210000002216 heart Anatomy 0.000 description 2
- 210000001320 hippocampus Anatomy 0.000 description 2
- 229950005911 hydroxystilbamidine Drugs 0.000 description 2
- 238000000099 in vitro assay Methods 0.000 description 2
- 230000002458 infectious effect Effects 0.000 description 2
- AGPKZVBTJJNPAG-UHFFFAOYSA-N isoleucine Natural products CCC(C)C(N)C(O)=O AGPKZVBTJJNPAG-UHFFFAOYSA-N 0.000 description 2
- 229960000310 isoleucine Drugs 0.000 description 2
- 125000000741 isoleucyl group Chemical group [H]N([H])C(C(C([H])([H])[H])C([H])([H])C([H])([H])[H])C(=O)O* 0.000 description 2
- 210000003734 kidney Anatomy 0.000 description 2
- 201000010901 lateral sclerosis Diseases 0.000 description 2
- 210000004558 lewy body Anatomy 0.000 description 2
- 230000000670 limiting effect Effects 0.000 description 2
- SXQCTESRRZBPHJ-UHFFFAOYSA-M lissamine rhodamine Chemical compound [Na+].C=12C=CC(=[N+](CC)CC)C=C2OC2=CC(N(CC)CC)=CC=C2C=1C1=CC=C(S([O-])(=O)=O)C=C1S([O-])(=O)=O SXQCTESRRZBPHJ-UHFFFAOYSA-M 0.000 description 2
- 210000004185 liver Anatomy 0.000 description 2
- 210000004072 lung Anatomy 0.000 description 2
- 210000002751 lymph Anatomy 0.000 description 2
- HQCYVSPJIOJEGA-UHFFFAOYSA-N methoxycoumarin Chemical compound C1=CC=C2OC(=O)C(OC)=CC2=C1 HQCYVSPJIOJEGA-UHFFFAOYSA-N 0.000 description 2
- 230000004048 modification Effects 0.000 description 2
- 238000012986 modification Methods 0.000 description 2
- AHEWZZJEDQVLOP-UHFFFAOYSA-N monobromobimane Chemical compound BrCC1=C(C)C(=O)N2N1C(C)=C(C)C2=O AHEWZZJEDQVLOP-UHFFFAOYSA-N 0.000 description 2
- 208000005264 motor neuron disease Diseases 0.000 description 2
- 230000004770 neurodegeneration Effects 0.000 description 2
- 231100000189 neurotoxic Toxicity 0.000 description 2
- 230000002887 neurotoxic effect Effects 0.000 description 2
- 210000000056 organ Anatomy 0.000 description 2
- 239000011368 organic material Substances 0.000 description 2
- 229910052760 oxygen Inorganic materials 0.000 description 2
- AFAIELJLZYUNPW-UHFFFAOYSA-N pararosaniline free base Chemical compound C1=CC(N)=CC=C1C(C=1C=CC(N)=CC=1)=C1C=CC(=N)C=C1 AFAIELJLZYUNPW-UHFFFAOYSA-N 0.000 description 2
- 239000002245 particle Substances 0.000 description 2
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 description 2
- COLNVLDHVKWLRT-UHFFFAOYSA-N phenylalanine Natural products OC(=O)C(N)CC1=CC=CC=C1 COLNVLDHVKWLRT-UHFFFAOYSA-N 0.000 description 2
- 239000010452 phosphate Substances 0.000 description 2
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 2
- 230000036470 plasma concentration Effects 0.000 description 2
- 239000011148 porous material Substances 0.000 description 2
- 230000004481 post-translational protein modification Effects 0.000 description 2
- 239000001103 potassium chloride Substances 0.000 description 2
- 235000011164 potassium chloride Nutrition 0.000 description 2
- RSRNHSYYBLEMOI-UHFFFAOYSA-M primuline Chemical compound [Na+].S1C2=C(S([O-])(=O)=O)C(C)=CC=C2N=C1C(C=C1S2)=CC=C1N=C2C1=CC=C(N)C=C1 RSRNHSYYBLEMOI-UHFFFAOYSA-M 0.000 description 2
- 230000004845 protein aggregation Effects 0.000 description 2
- INCIMLINXXICKS-UHFFFAOYSA-M pyronin Y Chemical compound [Cl-].C1=CC(=[N+](C)C)C=C2OC3=CC(N(C)C)=CC=C3C=C21 INCIMLINXXICKS-UHFFFAOYSA-M 0.000 description 2
- 238000011160 research Methods 0.000 description 2
- 229940043267 rhodamine b Drugs 0.000 description 2
- 102200005476 rs587777253 Human genes 0.000 description 2
- 102220092852 rs754853086 Human genes 0.000 description 2
- 238000012216 screening Methods 0.000 description 2
- 230000035945 sensitivity Effects 0.000 description 2
- 238000000926 separation method Methods 0.000 description 2
- 241000894007 species Species 0.000 description 2
- 238000012916 structural analysis Methods 0.000 description 2
- 230000008685 targeting Effects 0.000 description 2
- JGVWCANSWKRBCS-UHFFFAOYSA-N tetramethylrhodamine thiocyanate Chemical compound [Cl-].C=12C=CC(N(C)C)=CC2=[O+]C2=CC(N(C)C)=CC=C2C=1C1=CC=C(SC#N)C=C1C(O)=O JGVWCANSWKRBCS-UHFFFAOYSA-N 0.000 description 2
- 238000002560 therapeutic procedure Methods 0.000 description 2
- 230000007704 transition Effects 0.000 description 2
- SFLSHLFXELFNJZ-QMMMGPOBSA-N (-)-norepinephrine Chemical compound NC[C@H](O)C1=CC=C(O)C(O)=C1 SFLSHLFXELFNJZ-QMMMGPOBSA-N 0.000 description 1
- LORKUZBPMQEQET-UHFFFAOYSA-M (2e)-1,3,3-trimethyl-2-[(2z)-2-(1-methyl-2-phenylindol-1-ium-3-ylidene)ethylidene]indole;chloride Chemical compound [Cl-].CC1(C)C2=CC=CC=C2N(C)\C1=C/C=C(C1=CC=CC=C1[N+]=1C)/C=1C1=CC=CC=C1 LORKUZBPMQEQET-UHFFFAOYSA-M 0.000 description 1
- VQVUBYASAICPFU-UHFFFAOYSA-N (6'-acetyloxy-2',7'-dichloro-3-oxospiro[2-benzofuran-1,9'-xanthene]-3'-yl) acetate Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC(Cl)=C(OC(C)=O)C=C1OC1=C2C=C(Cl)C(OC(=O)C)=C1 VQVUBYASAICPFU-UHFFFAOYSA-N 0.000 description 1
- CHADEQDQBURGHL-UHFFFAOYSA-N (6'-acetyloxy-3-oxospiro[2-benzofuran-1,9'-xanthene]-3'-yl) acetate Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC=C(OC(C)=O)C=C1OC1=CC(OC(=O)C)=CC=C21 CHADEQDQBURGHL-UHFFFAOYSA-N 0.000 description 1
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 1
- CTTVWDKXMPBZMQ-UHFFFAOYSA-N 1-[6-(dimethylamino)naphthalen-2-yl]undecan-1-one Chemical compound CCCCCCCCCCC(=O)c1ccc2cc(ccc2c1)N(C)C CTTVWDKXMPBZMQ-UHFFFAOYSA-N 0.000 description 1
- UFBJCMHMOXMLKC-UHFFFAOYSA-N 2,4-dinitrophenol Chemical compound OC1=CC=C([N+]([O-])=O)C=C1[N+]([O-])=O UFBJCMHMOXMLKC-UHFFFAOYSA-N 0.000 description 1
- ADAOOVVYDLASGJ-UHFFFAOYSA-N 2,7,10-trimethylacridin-10-ium-3,6-diamine;chloride Chemical compound [Cl-].CC1=C(N)C=C2[N+](C)=C(C=C(C(C)=C3)N)C3=CC2=C1 ADAOOVVYDLASGJ-UHFFFAOYSA-N 0.000 description 1
- NOFPXGWBWIPSHI-UHFFFAOYSA-N 2,7,9-trimethylacridine-3,6-diamine;hydrochloride Chemical compound Cl.CC1=C(N)C=C2N=C(C=C(C(C)=C3)N)C3=C(C)C2=C1 NOFPXGWBWIPSHI-UHFFFAOYSA-N 0.000 description 1
- JNGRENQDBKMCCR-UHFFFAOYSA-N 2-(3-amino-6-iminoxanthen-9-yl)benzoic acid;hydrochloride Chemical compound [Cl-].C=12C=CC(=[NH2+])C=C2OC2=CC(N)=CC=C2C=1C1=CC=CC=C1C(O)=O JNGRENQDBKMCCR-UHFFFAOYSA-N 0.000 description 1
- IXZONVAEGFOVSF-UHFFFAOYSA-N 2-(5'-chloro-2'-phosphoryloxyphenyl)-6-chloro-4-(3H)-quinazolinone Chemical compound OP(O)(=O)OC1=CC=C(Cl)C=C1C1=NC(=O)C2=CC(Cl)=CC=C2N1 IXZONVAEGFOVSF-UHFFFAOYSA-N 0.000 description 1
- RUVJFMSQTCEAAB-UHFFFAOYSA-M 2-[3-[5,6-dichloro-1,3-bis[[4-(chloromethyl)phenyl]methyl]benzimidazol-2-ylidene]prop-1-enyl]-3-methyl-1,3-benzoxazol-3-ium;chloride Chemical compound [Cl-].O1C2=CC=CC=C2[N+](C)=C1C=CC=C(N(C1=CC(Cl)=C(Cl)C=C11)CC=2C=CC(CCl)=CC=2)N1CC1=CC=C(CCl)C=C1 RUVJFMSQTCEAAB-UHFFFAOYSA-M 0.000 description 1
- ALVZYHNBPIMLFM-UHFFFAOYSA-N 2-[4-[2-(4-carbamimidoylphenoxy)ethoxy]phenyl]-1h-indole-6-carboximidamide;dihydrochloride Chemical compound Cl.Cl.C1=CC(C(=N)N)=CC=C1OCCOC1=CC=C(C=2NC3=CC(=CC=C3C=2)C(N)=N)C=C1 ALVZYHNBPIMLFM-UHFFFAOYSA-N 0.000 description 1
- PDURUKZNVHEHGO-UHFFFAOYSA-N 2-[6-[bis(carboxymethyl)amino]-5-(carboxymethoxy)-1-benzofuran-2-yl]-1,3-oxazole-5-carboxylic acid Chemical compound O1C=2C=C(N(CC(O)=O)CC(O)=O)C(OCC(=O)O)=CC=2C=C1C1=NC=C(C(O)=O)O1 PDURUKZNVHEHGO-UHFFFAOYSA-N 0.000 description 1
- RJPSHDMGSVVHFA-UHFFFAOYSA-N 2-[carboxymethyl-[(7-hydroxy-4-methyl-2-oxochromen-8-yl)methyl]amino]acetic acid Chemical compound OC(=O)CN(CC(O)=O)CC1=C(O)C=CC2=C1OC(=O)C=C2C RJPSHDMGSVVHFA-UHFFFAOYSA-N 0.000 description 1
- UCSBOFLEOACXIR-UHFFFAOYSA-N 2-benzyl-8-(cyclopentylmethyl)-6-(4-hydroxyphenyl)imidazo[1,2-a]pyrazin-3-ol Chemical compound Oc1c(Cc2ccccc2)nc2c(CC3CCCC3)nc(cn12)-c1ccc(O)cc1 UCSBOFLEOACXIR-UHFFFAOYSA-N 0.000 description 1
- WFOTVGYJMFZMTD-UHFFFAOYSA-N 3',10'-dihydroxyspiro[2-benzofuran-3,7'-benzo[c]xanthene]-1-one Chemical compound O1C(=O)C2=CC=CC=C2C21C(C=CC=1C3=CC=C(O)C=1)=C3OC1=CC(O)=CC=C21 WFOTVGYJMFZMTD-UHFFFAOYSA-N 0.000 description 1
- KFKRXESVMDBTNQ-UHFFFAOYSA-N 3-[18-(2-carboxylatoethyl)-8,13-bis(1-hydroxyethyl)-3,7,12,17-tetramethyl-22,23-dihydroporphyrin-21,24-diium-2-yl]propanoate Chemical compound N1C2=C(C)C(C(C)O)=C1C=C(N1)C(C)=C(C(O)C)C1=CC(C(C)=C1CCC(O)=O)=NC1=CC(C(CCC(O)=O)=C1C)=NC1=C2 KFKRXESVMDBTNQ-UHFFFAOYSA-N 0.000 description 1
- HAPJROQJVSPKCJ-UHFFFAOYSA-N 3-[4-[2-[6-(dibutylamino)naphthalen-2-yl]ethenyl]pyridin-1-ium-1-yl]propane-1-sulfonate Chemical compound C1=CC2=CC(N(CCCC)CCCC)=CC=C2C=C1C=CC1=CC=[N+](CCCS([O-])(=O)=O)C=C1 HAPJROQJVSPKCJ-UHFFFAOYSA-N 0.000 description 1
- IXFSUSNUALIXLU-UHFFFAOYSA-N 3-[4-[2-[6-(dioctylamino)naphthalen-2-yl]ethenyl]pyridin-1-ium-1-yl]propane-1-sulfonate Chemical compound C1=CC2=CC(N(CCCCCCCC)CCCCCCCC)=CC=C2C=C1C=CC1=CC=[N+](CCCS([O-])(=O)=O)C=C1 IXFSUSNUALIXLU-UHFFFAOYSA-N 0.000 description 1
- QWZHDKGQKYEBKK-UHFFFAOYSA-N 3-aminochromen-2-one Chemical compound C1=CC=C2OC(=O)C(N)=CC2=C1 QWZHDKGQKYEBKK-UHFFFAOYSA-N 0.000 description 1
- VIIIJFZJKFXOGG-UHFFFAOYSA-N 3-methylchromen-2-one Chemical compound C1=CC=C2OC(=O)C(C)=CC2=C1 VIIIJFZJKFXOGG-UHFFFAOYSA-N 0.000 description 1
- PQJVKBUJXQTCGG-UHFFFAOYSA-N 3-n,6-n-dibenzylacridine-3,6-diamine;hydrochloride Chemical compound Cl.C=1C=CC=CC=1CNC(C=C1N=C2C=3)=CC=C1C=C2C=CC=3NCC1=CC=CC=C1 PQJVKBUJXQTCGG-UHFFFAOYSA-N 0.000 description 1
- FWBHETKCLVMNFS-UHFFFAOYSA-N 4',6-Diamino-2-phenylindol Chemical compound C1=CC(C(=N)N)=CC=C1C1=CC2=CC=C(C(N)=N)C=C2N1 FWBHETKCLVMNFS-UHFFFAOYSA-N 0.000 description 1
- YSCNMFDFYJUPEF-OWOJBTEDSA-N 4,4'-diisothiocyano-trans-stilbene-2,2'-disulfonic acid Chemical compound OS(=O)(=O)C1=CC(N=C=S)=CC=C1\C=C\C1=CC=C(N=C=S)C=C1S(O)(=O)=O YSCNMFDFYJUPEF-OWOJBTEDSA-N 0.000 description 1
- LHYQAEFVHIZFLR-UHFFFAOYSA-L 4-(4-diazonio-3-methoxyphenyl)-2-methoxybenzenediazonium;dichloride Chemical compound [Cl-].[Cl-].C1=C([N+]#N)C(OC)=CC(C=2C=C(OC)C([N+]#N)=CC=2)=C1 LHYQAEFVHIZFLR-UHFFFAOYSA-L 0.000 description 1
- YPGZWUVVEWKKDQ-UHFFFAOYSA-M 4-(4-dihexadecylaminostyryl)-N-methylpyridium iodide Chemical compound [I-].C1=CC(N(CCCCCCCCCCCCCCCC)CCCCCCCCCCCCCCCC)=CC=C1C=CC1=CC=[N+](C)C=C1 YPGZWUVVEWKKDQ-UHFFFAOYSA-M 0.000 description 1
- YOQMJMHTHWYNIO-UHFFFAOYSA-N 4-[6-[16-[2-(2,4-dicarboxyphenyl)-5-methoxy-1-benzofuran-6-yl]-1,4,10,13-tetraoxa-7,16-diazacyclooctadec-7-yl]-5-methoxy-1-benzofuran-2-yl]benzene-1,3-dicarboxylic acid Chemical compound COC1=CC=2C=C(C=3C(=CC(=CC=3)C(O)=O)C(O)=O)OC=2C=C1N(CCOCCOCC1)CCOCCOCCN1C(C(=CC=1C=2)OC)=CC=1OC=2C1=CC=C(C(O)=O)C=C1C(O)=O YOQMJMHTHWYNIO-UHFFFAOYSA-N 0.000 description 1
- NZVGXJAQIQJIOY-UHFFFAOYSA-N 4-[6-[6-(4-methylpiperazin-1-yl)-1h-benzimidazol-2-yl]-1h-benzimidazol-2-yl]benzenesulfonamide;trihydrochloride Chemical compound Cl.Cl.Cl.C1CN(C)CCN1C1=CC=C(N=C(N2)C=3C=C4NC(=NC4=CC=3)C=3C=CC(=CC=3)S(N)(=O)=O)C2=C1 NZVGXJAQIQJIOY-UHFFFAOYSA-N 0.000 description 1
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical compound C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 description 1
- QXYRRCOJHNZVDJ-UHFFFAOYSA-N 4-pyren-1-ylbutanoic acid Chemical compound C1=C2C(CCCC(=O)O)=CC=C(C=C3)C2=C2C3=CC=CC2=C1 QXYRRCOJHNZVDJ-UHFFFAOYSA-N 0.000 description 1
- JMHHECQPPFEVMU-UHFFFAOYSA-N 5-(dimethylamino)naphthalene-1-sulfonyl fluoride Chemical compound C1=CC=C2C(N(C)C)=CC=CC2=C1S(F)(=O)=O JMHHECQPPFEVMU-UHFFFAOYSA-N 0.000 description 1
- IPJDHSYCSQAODE-UHFFFAOYSA-N 5-chloromethylfluorescein diacetate Chemical compound O1C(=O)C2=CC(CCl)=CC=C2C21C1=CC=C(OC(C)=O)C=C1OC1=CC(OC(=O)C)=CC=C21 IPJDHSYCSQAODE-UHFFFAOYSA-N 0.000 description 1
- ZMERMCRYYFRELX-UHFFFAOYSA-N 5-{[2-(iodoacetamido)ethyl]amino}naphthalene-1-sulfonic acid Chemical compound C1=CC=C2C(S(=O)(=O)O)=CC=CC2=C1NCCNC(=O)CI ZMERMCRYYFRELX-UHFFFAOYSA-N 0.000 description 1
- VDBJCDWTNCKRTF-UHFFFAOYSA-N 6'-hydroxyspiro[2-benzofuran-3,9'-9ah-xanthene]-1,3'-dione Chemical compound O1C(=O)C2=CC=CC=C2C21C1C=CC(=O)C=C1OC1=CC(O)=CC=C21 VDBJCDWTNCKRTF-UHFFFAOYSA-N 0.000 description 1
- HWQQCFPHXPNXHC-UHFFFAOYSA-N 6-[(4,6-dichloro-1,3,5-triazin-2-yl)amino]-3',6'-dihydroxyspiro[2-benzofuran-3,9'-xanthene]-1-one Chemical compound C=1C(O)=CC=C2C=1OC1=CC(O)=CC=C1C2(C1=CC=2)OC(=O)C1=CC=2NC1=NC(Cl)=NC(Cl)=N1 HWQQCFPHXPNXHC-UHFFFAOYSA-N 0.000 description 1
- IDLISIVVYLGCKO-UHFFFAOYSA-N 6-carboxy-4',5'-dichloro-2',7'-dimethoxyfluorescein Chemical compound O1C(=O)C2=CC=C(C(O)=O)C=C2C21C1=CC(OC)=C(O)C(Cl)=C1OC1=C2C=C(OC)C(O)=C1Cl IDLISIVVYLGCKO-UHFFFAOYSA-N 0.000 description 1
- CJIJXIFQYOPWTF-UHFFFAOYSA-N 7-hydroxycoumarin Natural products O1C(=O)C=CC2=CC(O)=CC=C21 CJIJXIFQYOPWTF-UHFFFAOYSA-N 0.000 description 1
- WJOLQGAMGUBOFS-UHFFFAOYSA-N 8-(cyclopentylmethyl)-2-[(4-fluorophenyl)methyl]-6-(4-hydroxyphenyl)imidazo[1,2-a]pyrazin-3-ol Chemical compound Oc1c(Cc2ccc(F)cc2)nc2c(CC3CCCC3)nc(cn12)-c1ccc(O)cc1 WJOLQGAMGUBOFS-UHFFFAOYSA-N 0.000 description 1
- FWEOQOXTVHGIFQ-UHFFFAOYSA-N 8-anilinonaphthalene-1-sulfonic acid Chemical compound C=12C(S(=O)(=O)O)=CC=CC2=CC=CC=1NC1=CC=CC=C1 FWEOQOXTVHGIFQ-UHFFFAOYSA-N 0.000 description 1
- ONVKEAHBFKWZHK-UHFFFAOYSA-N 8-benzyl-6-(4-hydroxyphenyl)-2-(naphthalen-1-ylmethyl)imidazo[1,2-a]pyrazin-3-ol Chemical compound Oc1c(Cc2cccc3ccccc23)nc2c(Cc3ccccc3)nc(cn12)-c1ccc(O)cc1 ONVKEAHBFKWZHK-UHFFFAOYSA-N 0.000 description 1
- SGAOZXGJGQEBHA-UHFFFAOYSA-N 82344-98-7 Chemical compound C1CCN2CCCC(C=C3C4(OC(C5=CC(=CC=C54)N=C=S)=O)C4=C5)=C2C1=C3OC4=C1CCCN2CCCC5=C12 SGAOZXGJGQEBHA-UHFFFAOYSA-N 0.000 description 1
- TUCVPZNBGBRVRL-UHFFFAOYSA-N 9'-chloro-3',10'-dihydroxyspiro[2-benzofuran-3,7'-benzo[c]xanthene]-1-one Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC(Cl)=C(O)C=C1OC1=C2C=CC2=CC(O)=CC=C21 TUCVPZNBGBRVRL-UHFFFAOYSA-N 0.000 description 1
- ICISKFRDNHZCKS-UHFFFAOYSA-N 9-(4-aminophenyl)-2-methylacridin-3-amine;nitric acid Chemical compound O[N+]([O-])=O.C12=CC=CC=C2N=C2C=C(N)C(C)=CC2=C1C1=CC=C(N)C=C1 ICISKFRDNHZCKS-UHFFFAOYSA-N 0.000 description 1
- 101150037123 APOE gene Proteins 0.000 description 1
- 241000282979 Alces alces Species 0.000 description 1
- 102000002260 Alkaline Phosphatase Human genes 0.000 description 1
- 108020004774 Alkaline Phosphatase Proteins 0.000 description 1
- 102000001049 Amyloid Human genes 0.000 description 1
- 108010094108 Amyloid Proteins 0.000 description 1
- 241000024188 Andala Species 0.000 description 1
- PAYRUJLWNCNPSJ-UHFFFAOYSA-N Aniline Chemical compound NC1=CC=CC=C1 PAYRUJLWNCNPSJ-UHFFFAOYSA-N 0.000 description 1
- 208000031295 Animal disease Diseases 0.000 description 1
- 239000004475 Arginine Substances 0.000 description 1
- DCXYFEDJOCDNAF-UHFFFAOYSA-N Asparagine Natural products OC(=O)C(N)CC(N)=O DCXYFEDJOCDNAF-UHFFFAOYSA-N 0.000 description 1
- 201000001320 Atherosclerosis Diseases 0.000 description 1
- 108091003079 Bovine Serum Albumin Proteins 0.000 description 1
- MWNLTKCQHFZFHN-UHFFFAOYSA-N CBQCA reagent Chemical compound C1=CC(C(=O)O)=CC=C1C(=O)C1=CC2=CC=CC=C2N=C1C=O MWNLTKCQHFZFHN-UHFFFAOYSA-N 0.000 description 1
- 241000282472 Canis lupus familiaris Species 0.000 description 1
- 102000003846 Carbonic anhydrases Human genes 0.000 description 1
- 108090000209 Carbonic anhydrases Proteins 0.000 description 1
- 206010007509 Cardiac amyloidosis Diseases 0.000 description 1
- 206010007559 Cardiac failure congestive Diseases 0.000 description 1
- 108091005944 Cerulean Proteins 0.000 description 1
- 241000282994 Cervidae Species 0.000 description 1
- 241000579895 Chlorostilbon Species 0.000 description 1
- 108091005943 CyPet Proteins 0.000 description 1
- IVOMOUWHDPKRLL-KQYNXXCUSA-N Cyclic adenosine monophosphate Chemical compound C([C@H]1O2)OP(O)(=O)O[C@H]1[C@@H](O)[C@@H]2N1C(N=CN=C2N)=C2N=C1 IVOMOUWHDPKRLL-KQYNXXCUSA-N 0.000 description 1
- ODKSFYDXXFIFQN-SCSAIBSYSA-N D-arginine Chemical compound OC(=O)[C@H](N)CCCNC(N)=N ODKSFYDXXFIFQN-SCSAIBSYSA-N 0.000 description 1
- BRDJPCFGLMKJRU-UHFFFAOYSA-N DDAO Chemical compound ClC1=C(O)C(Cl)=C2C(C)(C)C3=CC(=O)C=CC3=NC2=C1 BRDJPCFGLMKJRU-UHFFFAOYSA-N 0.000 description 1
- 108020004414 DNA Proteins 0.000 description 1
- 101100216294 Danio rerio apoeb gene Proteins 0.000 description 1
- XPDXVDYUQZHFPV-UHFFFAOYSA-N Dansyl Chloride Chemical compound C1=CC=C2C(N(C)C)=CC=CC2=C1S(Cl)(=O)=O XPDXVDYUQZHFPV-UHFFFAOYSA-N 0.000 description 1
- 206010012289 Dementia Diseases 0.000 description 1
- BWGNESOTFCXPMA-UHFFFAOYSA-N Dihydrogen disulfide Chemical compound SS BWGNESOTFCXPMA-UHFFFAOYSA-N 0.000 description 1
- 108090000204 Dipeptidase 1 Proteins 0.000 description 1
- 238000002965 ELISA Methods 0.000 description 1
- 108010067770 Endopeptidase K Proteins 0.000 description 1
- 241000283086 Equidae Species 0.000 description 1
- QUSNBJAOOMFDIB-UHFFFAOYSA-N Ethylamine Chemical group CCN QUSNBJAOOMFDIB-UHFFFAOYSA-N 0.000 description 1
- 206010016202 Familial Amyloidosis Diseases 0.000 description 1
- 241000282326 Felis catus Species 0.000 description 1
- OUVXYXNWSVIOSJ-UHFFFAOYSA-N Fluo-4 Chemical compound CC1=CC=C(N(CC(O)=O)CC(O)=O)C(OCCOC=2C(=CC=C(C=2)C2=C3C=C(F)C(=O)C=C3OC3=CC(O)=C(F)C=C32)N(CC(O)=O)CC(O)=O)=C1 OUVXYXNWSVIOSJ-UHFFFAOYSA-N 0.000 description 1
- YCKRFDGAMUMZLT-UHFFFAOYSA-N Fluorine atom Chemical compound [F] YCKRFDGAMUMZLT-UHFFFAOYSA-N 0.000 description 1
- 230000005526 G1 to G0 transition Effects 0.000 description 1
- 102220566467 GDNF family receptor alpha-1_S65A_mutation Human genes 0.000 description 1
- 102220566453 GDNF family receptor alpha-1_Y66F_mutation Human genes 0.000 description 1
- 102220566455 GDNF family receptor alpha-1_Y66W_mutation Human genes 0.000 description 1
- 108010015776 Glucose oxidase Proteins 0.000 description 1
- 239000004366 Glucose oxidase Substances 0.000 description 1
- 102000003886 Glycoproteins Human genes 0.000 description 1
- 108090000288 Glycoproteins Proteins 0.000 description 1
- 108010043121 Green Fluorescent Proteins Proteins 0.000 description 1
- 102000004144 Green Fluorescent Proteins Human genes 0.000 description 1
- 206010019280 Heart failures Diseases 0.000 description 1
- 102000018071 Immunoglobulin Fc Fragments Human genes 0.000 description 1
- 108010091135 Immunoglobulin Fc Fragments Proteins 0.000 description 1
- ONIBWKKTOPOVIA-BYPYZUCNSA-N L-Proline Chemical compound OC(=O)[C@@H]1CCCN1 ONIBWKKTOPOVIA-BYPYZUCNSA-N 0.000 description 1
- ODKSFYDXXFIFQN-BYPYZUCNSA-P L-argininium(2+) Chemical compound NC(=[NH2+])NCCC[C@H]([NH3+])C(O)=O ODKSFYDXXFIFQN-BYPYZUCNSA-P 0.000 description 1
- 125000000174 L-prolyl group Chemical group [H]N1C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])C(*)=O 0.000 description 1
- AYFVYJQAPQTCCC-GBXIJSLDSA-N L-threonine Chemical compound C[C@@H](O)[C@H](N)C(O)=O AYFVYJQAPQTCCC-GBXIJSLDSA-N 0.000 description 1
- 125000000510 L-tryptophano group Chemical group [H]C1=C([H])C([H])=C2N([H])C([H])=C(C([H])([H])[C@@]([H])(C(O[H])=O)N([H])[*])C2=C1[H] 0.000 description 1
- FYYHWMGAXLPEAU-UHFFFAOYSA-N Magnesium Chemical compound [Mg] FYYHWMGAXLPEAU-UHFFFAOYSA-N 0.000 description 1
- 241000124008 Mammalia Species 0.000 description 1
- 208000009018 Medullary thyroid cancer Diseases 0.000 description 1
- 208000034578 Multiple myelomas Diseases 0.000 description 1
- 241000699670 Mus sp. Species 0.000 description 1
- SNIXRMIHFOIVBB-UHFFFAOYSA-N N-Hydroxyl-tryptamine Chemical compound C1=CC=C2C(CCNO)=CNC2=C1 SNIXRMIHFOIVBB-UHFFFAOYSA-N 0.000 description 1
- 108010049175 N-substituted Glycines Proteins 0.000 description 1
- 125000000729 N-terminal amino-acid group Chemical group 0.000 description 1
- 208000012902 Nervous system disease Diseases 0.000 description 1
- 208000025966 Neurological disease Diseases 0.000 description 1
- CTQNGGLPUBDAKN-UHFFFAOYSA-N O-Xylene Chemical compound CC1=CC=CC=C1C CTQNGGLPUBDAKN-UHFFFAOYSA-N 0.000 description 1
- 241000283973 Oryctolagus cuniculus Species 0.000 description 1
- 208000002774 Paraproteinemias Diseases 0.000 description 1
- QBKMWMZYHZILHF-UHFFFAOYSA-L Po-Pro-1 Chemical compound [I-].[I-].O1C2=CC=CC=C2[N+](C)=C1C=C1C=CN(CCC[N+](C)(C)C)C=C1 QBKMWMZYHZILHF-UHFFFAOYSA-L 0.000 description 1
- CZQJZBNARVNSLQ-UHFFFAOYSA-L Po-Pro-3 Chemical compound [I-].[I-].O1C2=CC=CC=C2[N+](C)=C1C=CC=C1C=CN(CCC[N+](C)(C)C)C=C1 CZQJZBNARVNSLQ-UHFFFAOYSA-L 0.000 description 1
- BOLJGYHEBJNGBV-UHFFFAOYSA-J PoPo-1 Chemical compound [I-].[I-].[I-].[I-].O1C2=CC=CC=C2[N+](C)=C1C=C1C=CN(CCC[N+](C)(C)CCC[N+](C)(C)CCCN2C=CC(=CC3=[N+](C4=CC=CC=C4O3)C)C=C2)C=C1 BOLJGYHEBJNGBV-UHFFFAOYSA-J 0.000 description 1
- GYPIAQJSRPTNTI-UHFFFAOYSA-J PoPo-3 Chemical compound [I-].[I-].[I-].[I-].O1C2=CC=CC=C2[N+](C)=C1C=CC=C1C=CN(CCC[N+](C)(C)CCC[N+](C)(C)CCCN2C=CC(=CC=CC3=[N+](C4=CC=CC=C4O3)C)C=C2)C=C1 GYPIAQJSRPTNTI-UHFFFAOYSA-J 0.000 description 1
- 206010036105 Polyneuropathy Diseases 0.000 description 1
- 108700021402 PrP 27-30 Proteins 0.000 description 1
- 208000032236 Predisposition to disease Diseases 0.000 description 1
- 102000012412 Presenilin-1 Human genes 0.000 description 1
- 108010036933 Presenilin-1 Proteins 0.000 description 1
- 102000012419 Presenilin-2 Human genes 0.000 description 1
- 108010036908 Presenilin-2 Proteins 0.000 description 1
- 208000014675 Prion-associated disease Diseases 0.000 description 1
- ONIBWKKTOPOVIA-UHFFFAOYSA-N Proline Natural products OC(=O)C1CCCN1 ONIBWKKTOPOVIA-UHFFFAOYSA-N 0.000 description 1
- 102000001708 Protein Isoforms Human genes 0.000 description 1
- 108010029485 Protein Isoforms Proteins 0.000 description 1
- BDJDTKYGKHEMFF-UHFFFAOYSA-M QSY7 succinimidyl ester Chemical compound [Cl-].C=1C=C2C(C=3C(=CC=CC=3)S(=O)(=O)N3CCC(CC3)C(=O)ON3C(CCC3=O)=O)=C3C=C\C(=[N+](\C)C=4C=CC=CC=4)C=C3OC2=CC=1N(C)C1=CC=CC=C1 BDJDTKYGKHEMFF-UHFFFAOYSA-M 0.000 description 1
- 108020004511 Recombinant DNA Proteins 0.000 description 1
- KAEGGIFPLJZUOZ-UHFFFAOYSA-N Renilla luciferin Chemical compound C1=CC(O)=CC=C1C(N1)=CN2C(=O)C(CC=3C=CC=CC=3)=NC2=C1CC1=CC=CC=C1 KAEGGIFPLJZUOZ-UHFFFAOYSA-N 0.000 description 1
- 238000012300 Sequence Analysis Methods 0.000 description 1
- 108010032838 Sialoglycoproteins Proteins 0.000 description 1
- 102000007365 Sialoglycoproteins Human genes 0.000 description 1
- 101710172711 Structural protein Proteins 0.000 description 1
- 241000282898 Sus scrofa Species 0.000 description 1
- 239000004098 Tetracycline Substances 0.000 description 1
- 229920000398 Thiolyte Polymers 0.000 description 1
- DPXHITFUCHFTKR-UHFFFAOYSA-L To-Pro-1 Chemical compound [I-].[I-].S1C2=CC=CC=C2[N+](C)=C1C=C1C2=CC=CC=C2N(CCC[N+](C)(C)C)C=C1 DPXHITFUCHFTKR-UHFFFAOYSA-L 0.000 description 1
- QHNORJFCVHUPNH-UHFFFAOYSA-L To-Pro-3 Chemical compound [I-].[I-].S1C2=CC=CC=C2[N+](C)=C1C=CC=C1C2=CC=CC=C2N(CCC[N+](C)(C)C)C=C1 QHNORJFCVHUPNH-UHFFFAOYSA-L 0.000 description 1
- MZZINWWGSYUHGU-UHFFFAOYSA-J ToTo-1 Chemical compound [I-].[I-].[I-].[I-].C12=CC=CC=C2C(C=C2N(C3=CC=CC=C3S2)C)=CC=[N+]1CCC[N+](C)(C)CCC[N+](C)(C)CCC[N+](C1=CC=CC=C11)=CC=C1C=C1N(C)C2=CC=CC=C2S1 MZZINWWGSYUHGU-UHFFFAOYSA-J 0.000 description 1
- 102220615016 Transcription elongation regulator 1_S65C_mutation Human genes 0.000 description 1
- APJYDQYYACXCRM-UHFFFAOYSA-N Tryptamine Natural products C1=CC=C2C(CCN)=CNC2=C1 APJYDQYYACXCRM-UHFFFAOYSA-N 0.000 description 1
- IVOMOUWHDPKRLL-UHFFFAOYSA-N UNPD107823 Natural products O1C2COP(O)(=O)OC2C(O)C1N1C(N=CN=C2N)=C2N=C1 IVOMOUWHDPKRLL-UHFFFAOYSA-N 0.000 description 1
- ULHRKLSNHXXJLO-UHFFFAOYSA-L Yo-Pro-1 Chemical compound [I-].[I-].C1=CC=C2C(C=C3N(C4=CC=CC=C4O3)C)=CC=[N+](CCC[N+](C)(C)C)C2=C1 ULHRKLSNHXXJLO-UHFFFAOYSA-L 0.000 description 1
- ZVUUXEGAYWQURQ-UHFFFAOYSA-L Yo-Pro-3 Chemical compound [I-].[I-].O1C2=CC=CC=C2[N+](C)=C1C=CC=C1C2=CC=CC=C2N(CCC[N+](C)(C)C)C=C1 ZVUUXEGAYWQURQ-UHFFFAOYSA-L 0.000 description 1
- GRRMZXFOOGQMFA-UHFFFAOYSA-J YoYo-1 Chemical compound [I-].[I-].[I-].[I-].C12=CC=CC=C2C(C=C2N(C3=CC=CC=C3O2)C)=CC=[N+]1CCC[N+](C)(C)CCC[N+](C)(C)CCC[N+](C1=CC=CC=C11)=CC=C1C=C1N(C)C2=CC=CC=C2O1 GRRMZXFOOGQMFA-UHFFFAOYSA-J 0.000 description 1
- JSBNEYNPYQFYNM-UHFFFAOYSA-J YoYo-3 Chemical compound [I-].[I-].[I-].[I-].C12=CC=CC=C2C(C=CC=C2N(C3=CC=CC=C3O2)C)=CC=[N+]1CCC(=[N+](C)C)CCCC(=[N+](C)C)CC[N+](C1=CC=CC=C11)=CC=C1C=CC=C1N(C)C2=CC=CC=C2O1 JSBNEYNPYQFYNM-UHFFFAOYSA-J 0.000 description 1
- APERIXFHHNDFQV-UHFFFAOYSA-N [2-[2-[2-[bis(carboxymethyl)amino]-5-methylphenoxy]ethoxy]-4-[3,6-bis(dimethylamino)xanthen-9-ylidene]cyclohexa-2,5-dien-1-ylidene]-bis(carboxymethyl)azanium;chloride Chemical compound [Cl-].C12=CC=C(N(C)C)C=C2OC2=CC(N(C)C)=CC=C2C1=C(C=1)C=CC(=[N+](CC(O)=O)CC(O)=O)C=1OCCOC1=CC(C)=CC=C1N(CC(O)=O)CC(O)=O APERIXFHHNDFQV-UHFFFAOYSA-N 0.000 description 1
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 description 1
- ZYVSOIYQKUDENJ-UHFFFAOYSA-N [6-[[6-[4-[4-(5-acetyloxy-4-hydroxy-4,6-dimethyloxan-2-yl)oxy-5-hydroxy-6-methyloxan-2-yl]oxy-5-hydroxy-6-methyloxan-2-yl]oxy-7-(3,4-dihydroxy-1-methoxy-2-oxopentyl)-4,10-dihydroxy-3-methyl-5-oxo-7,8-dihydro-6h-anthracen-2-yl]oxy]-4-(4-hydroxy-5-methoxy-6 Chemical compound CC=1C(O)=C2C(O)=C3C(=O)C(OC4OC(C)C(O)C(OC5OC(C)C(O)C(OC6OC(C)C(OC(C)=O)C(C)(O)C6)C5)C4)C(C(OC)C(=O)C(O)C(C)O)CC3=CC2=CC=1OC(OC(C)C1OC(C)=O)CC1OC1CC(O)C(OC)C(C)O1 ZYVSOIYQKUDENJ-UHFFFAOYSA-N 0.000 description 1
- XJLXINKUBYWONI-DQQFMEOOSA-N [[(2r,3r,4r,5r)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2s,3r,4s,5s)-5-(3-carbamoylpyridin-1-ium-1-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphate Chemical compound NC(=O)C1=CC=C[N+]([C@@H]2[C@H]([C@@H](O)[C@H](COP([O-])(=O)OP(O)(=O)OC[C@@H]3[C@H]([C@@H](OP(O)(O)=O)[C@@H](O3)N3C4=NC=NC(N)=C4N=C3)O)O2)O)=C1 XJLXINKUBYWONI-DQQFMEOOSA-N 0.000 description 1
- 238000009825 accumulation Methods 0.000 description 1
- 125000000218 acetic acid group Chemical group C(C)(=O)* 0.000 description 1
- 230000021736 acetylation Effects 0.000 description 1
- 238000006640 acetylation reaction Methods 0.000 description 1
- RZUBARUFLYGOGC-MTHOTQAESA-L acid fuchsin Chemical compound [Na+].[Na+].[O-]S(=O)(=O)C1=C(N)C(C)=CC(C(=C\2C=C(C(=[NH2+])C=C/2)S([O-])(=O)=O)\C=2C=C(C(N)=CC=2)S([O-])(=O)=O)=C1 RZUBARUFLYGOGC-MTHOTQAESA-L 0.000 description 1
- DPKHZNPWBDQZCN-UHFFFAOYSA-N acridine orange free base Chemical compound C1=CC(N(C)C)=CC2=NC3=CC(N(C)C)=CC=C3C=C21 DPKHZNPWBDQZCN-UHFFFAOYSA-N 0.000 description 1
- IVHDZUFNZLETBM-IWSIBTJSSA-N acridine red 3B Chemical compound [Cl-].C1=C\C(=[NH+]/C)C=C2OC3=CC(NC)=CC=C3C=C21 IVHDZUFNZLETBM-IWSIBTJSSA-N 0.000 description 1
- BGLGAKMTYHWWKW-UHFFFAOYSA-N acridine yellow Chemical compound [H+].[Cl-].CC1=C(N)C=C2N=C(C=C(C(C)=C3)N)C3=CC2=C1 BGLGAKMTYHWWKW-UHFFFAOYSA-N 0.000 description 1
- 230000010933 acylation Effects 0.000 description 1
- 238000005917 acylation reaction Methods 0.000 description 1
- RGCKGOZRHPZPFP-UHFFFAOYSA-N alizarin Chemical compound C1=CC=C2C(=O)C3=C(O)C(O)=CC=C3C(=O)C2=C1 RGCKGOZRHPZPFP-UHFFFAOYSA-N 0.000 description 1
- PWIGYBONXWGOQE-UHFFFAOYSA-N alizarin complexone Chemical compound O=C1C2=CC=CC=C2C(=O)C2=C1C=C(CN(CC(O)=O)CC(=O)O)C(O)=C2O PWIGYBONXWGOQE-UHFFFAOYSA-N 0.000 description 1
- 125000003368 amide group Chemical group 0.000 description 1
- 150000001408 amides Chemical group 0.000 description 1
- 230000003321 amplification Effects 0.000 description 1
- 239000012491 analyte Substances 0.000 description 1
- 238000010171 animal model Methods 0.000 description 1
- 239000003125 aqueous solvent Substances 0.000 description 1
- ODKSFYDXXFIFQN-UHFFFAOYSA-N arginine Natural products OC(=O)C(N)CCCNC(N)=N ODKSFYDXXFIFQN-UHFFFAOYSA-N 0.000 description 1
- 235000009582 asparagine Nutrition 0.000 description 1
- 229960001230 asparagine Drugs 0.000 description 1
- 125000000613 asparagine group Chemical group N[C@@H](CC(N)=O)C(=O)* 0.000 description 1
- 239000012131 assay buffer Substances 0.000 description 1
- 125000004429 atom Chemical group 0.000 description 1
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 description 1
- JPIYZTWMUGTEHX-UHFFFAOYSA-N auramine O free base Chemical compound C1=CC(N(C)C)=CC=C1C(=N)C1=CC=C(N(C)C)C=C1 JPIYZTWMUGTEHX-UHFFFAOYSA-N 0.000 description 1
- 230000008901 benefit Effects 0.000 description 1
- DZBUGLKDJFMEHC-UHFFFAOYSA-N benzoquinolinylidene Natural products C1=CC=CC2=CC3=CC=CC=C3N=C21 DZBUGLKDJFMEHC-UHFFFAOYSA-N 0.000 description 1
- OJVABJMSSDUECT-UHFFFAOYSA-L berberin sulfate Chemical compound [O-]S([O-])(=O)=O.C1=C2CC[N+]3=CC4=C(OC)C(OC)=CC=C4C=C3C2=CC2=C1OCO2.C1=C2CC[N+]3=CC4=C(OC)C(OC)=CC=C4C=C3C2=CC2=C1OCO2 OJVABJMSSDUECT-UHFFFAOYSA-L 0.000 description 1
- 102000005936 beta-Galactosidase Human genes 0.000 description 1
- 108010005774 beta-Galactosidase Proteins 0.000 description 1
- 102000006635 beta-lactamase Human genes 0.000 description 1
- 239000012620 biological material Substances 0.000 description 1
- 210000004369 blood Anatomy 0.000 description 1
- 239000008280 blood Substances 0.000 description 1
- 210000004204 blood vessel Anatomy 0.000 description 1
- 229940098773 bovine serum albumin Drugs 0.000 description 1
- 125000000484 butyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- NMUGYJRMGWBCPU-UHFFFAOYSA-N calcium orange Chemical compound C=12C=CC(=[N+](C)C)C=C2OC2=CC(N(C)C)=CC=C2C=1C(C(=C1)C([O-])=O)=CC=C1NC(=S)NC(C=1)=CC=C(N(CC(=O)OCOC(C)=O)CC(=O)OCOC(C)=O)C=1OCCOC1=CC=CC=C1N(CC(=O)OCOC(C)=O)CC(=O)OCOC(C)=O NMUGYJRMGWBCPU-UHFFFAOYSA-N 0.000 description 1
- 150000001721 carbon Chemical group 0.000 description 1
- 229910052799 carbon Inorganic materials 0.000 description 1
- CREMABGTGYGIQB-UHFFFAOYSA-N carbon carbon Chemical compound C.C CREMABGTGYGIQB-UHFFFAOYSA-N 0.000 description 1
- 239000011203 carbon fibre reinforced carbon Substances 0.000 description 1
- OKTJSMMVPCPJKN-BJUDXGSMSA-N carbon-11 Chemical group [11C] OKTJSMMVPCPJKN-BJUDXGSMSA-N 0.000 description 1
- 125000002915 carbonyl group Chemical group [*:2]C([*:1])=O 0.000 description 1
- 230000021523 carboxylation Effects 0.000 description 1
- 238000006473 carboxylation reaction Methods 0.000 description 1
- 230000000747 cardiac effect Effects 0.000 description 1
- 150000003943 catecholamines Chemical class 0.000 description 1
- 230000001413 cellular effect Effects 0.000 description 1
- 229940106189 ceramide Drugs 0.000 description 1
- NAXWWTPJXAIEJE-UHFFFAOYSA-N chembl1398678 Chemical compound C1=CC=CC2=C(O)C(N=NC3=CC=C(C=C3)C3=NC4=CC=C(C(=C4S3)S(O)(=O)=O)C)=CC(S(O)(=O)=O)=C21 NAXWWTPJXAIEJE-UHFFFAOYSA-N 0.000 description 1
- HQKOBNMULFASAN-UHFFFAOYSA-N chembl1991515 Chemical compound OC1=CC=C(Cl)C=C1N=NC1=C(O)C=CC2=CC=CC=C12 HQKOBNMULFASAN-UHFFFAOYSA-N 0.000 description 1
- VYXSBFYARXAAKO-WTKGSRSZSA-N chembl402140 Chemical compound Cl.C1=2C=C(C)C(NCC)=CC=2OC2=C\C(=N/CC)C(C)=CC2=C1C1=CC=CC=C1C(=O)OCC VYXSBFYARXAAKO-WTKGSRSZSA-N 0.000 description 1
- 125000003636 chemical group Chemical group 0.000 description 1
- 239000003153 chemical reaction reagent Substances 0.000 description 1
- 239000005081 chemiluminescent agent Substances 0.000 description 1
- 229930002875 chlorophyll Natural products 0.000 description 1
- 235000019804 chlorophyll Nutrition 0.000 description 1
- ATNHDLDRLWWWCB-AENOIHSZSA-M chlorophyll a Chemical compound C1([C@@H](C(=O)OC)C(=O)C2=C3C)=C2N2C3=CC(C(CC)=C3C)=[N+]4C3=CC3=C(C=C)C(C)=C5N3[Mg-2]42[N+]2=C1[C@@H](CCC(=O)OC\C=C(/C)CCC[C@H](C)CCC[C@H](C)CCCC(C)C)[C@H](C)C2=C5 ATNHDLDRLWWWCB-AENOIHSZSA-M 0.000 description 1
- 210000000349 chromosome Anatomy 0.000 description 1
- 208000037976 chronic inflammation Diseases 0.000 description 1
- 230000006020 chronic inflammation Effects 0.000 description 1
- 208000020832 chronic kidney disease Diseases 0.000 description 1
- 208000022831 chronic renal failure syndrome Diseases 0.000 description 1
- 238000000978 circular dichroism spectroscopy Methods 0.000 description 1
- 238000005352 clarification Methods 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 238000010668 complexation reaction Methods 0.000 description 1
- 238000012790 confirmation Methods 0.000 description 1
- 230000008876 conformational transition Effects 0.000 description 1
- 230000001268 conjugating effect Effects 0.000 description 1
- 229960000956 coumarin Drugs 0.000 description 1
- 235000001671 coumarin Nutrition 0.000 description 1
- AFYCEAFSNDLKSX-UHFFFAOYSA-N coumarin 460 Chemical compound CC1=CC(=O)OC2=CC(N(CC)CC)=CC=C21 AFYCEAFSNDLKSX-UHFFFAOYSA-N 0.000 description 1
- 108010082025 cyan fluorescent protein Proteins 0.000 description 1
- 229940095074 cyclic amp Drugs 0.000 description 1
- 230000008021 deposition Effects 0.000 description 1
- 238000010790 dilution Methods 0.000 description 1
- 239000012895 dilution Substances 0.000 description 1
- 239000000539 dimer Substances 0.000 description 1
- 231100000676 disease causative agent Toxicity 0.000 description 1
- BMAUDWDYKLUBPY-UHFFFAOYSA-L disodium;3-[[4-[(4,6-dichloro-1,3,5-triazin-2-yl)amino]-2-methylphenyl]diazenyl]naphthalene-1,5-disulfonate Chemical compound [Na+].[Na+].C=1C=C(N=NC=2C=C3C(=CC=CC3=C(C=2)S([O-])(=O)=O)S([O-])(=O)=O)C(C)=CC=1NC1=NC(Cl)=NC(Cl)=N1 BMAUDWDYKLUBPY-UHFFFAOYSA-L 0.000 description 1
- BDYOOAPDMVGPIQ-QDBORUFSSA-L disodium;5-[(4-anilino-6-methoxy-1,3,5-triazin-2-yl)amino]-2-[(e)-2-[4-[(4-anilino-6-methoxy-1,3,5-triazin-2-yl)amino]-2-sulfonatophenyl]ethenyl]benzenesulfonate Chemical compound [Na+].[Na+].N=1C(NC=2C=C(C(\C=C\C=3C(=CC(NC=4N=C(OC)N=C(NC=5C=CC=CC=5)N=4)=CC=3)S([O-])(=O)=O)=CC=2)S([O-])(=O)=O)=NC(OC)=NC=1NC1=CC=CC=C1 BDYOOAPDMVGPIQ-QDBORUFSSA-L 0.000 description 1
- 229960003638 dopamine Drugs 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 229940000406 drug candidate Drugs 0.000 description 1
- 239000012149 elution buffer Substances 0.000 description 1
- 238000000295 emission spectrum Methods 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 108010048367 enhanced green fluorescent protein Proteins 0.000 description 1
- 230000007613 environmental effect Effects 0.000 description 1
- 239000002532 enzyme inhibitor Substances 0.000 description 1
- YQGOJNYOYNNSMM-UHFFFAOYSA-N eosin Chemical compound [Na+].OC(=O)C1=CC=CC=C1C1=C2C=C(Br)C(=O)C(Br)=C2OC2=C(Br)C(O)=C(Br)C=C21 YQGOJNYOYNNSMM-UHFFFAOYSA-N 0.000 description 1
- ZMMJGEGLRURXTF-UHFFFAOYSA-N ethidium bromide Chemical compound [Br-].C12=CC(N)=CC=C2C2=CC=C(N)C=C2[N+](CC)=C1C1=CC=CC=C1 ZMMJGEGLRURXTF-UHFFFAOYSA-N 0.000 description 1
- 229960005542 ethidium bromide Drugs 0.000 description 1
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- NNMXSTWQJRPBJZ-UHFFFAOYSA-K europium(iii) chloride Chemical compound Cl[Eu](Cl)Cl NNMXSTWQJRPBJZ-UHFFFAOYSA-K 0.000 description 1
- 238000000695 excitation spectrum Methods 0.000 description 1
- 210000003608 fece Anatomy 0.000 description 1
- 230000002600 fibrillogenic effect Effects 0.000 description 1
- 238000001914 filtration Methods 0.000 description 1
- YCKRFDGAMUMZLT-BJUDXGSMSA-N fluorine-18 atom Chemical compound [18F] YCKRFDGAMUMZLT-BJUDXGSMSA-N 0.000 description 1
- 235000013305 food Nutrition 0.000 description 1
- 229940116332 glucose oxidase Drugs 0.000 description 1
- 235000019420 glucose oxidase Nutrition 0.000 description 1
- ZDXPYRJPNDTMRX-UHFFFAOYSA-N glutamine Natural products OC(=O)C(N)CCC(N)=O ZDXPYRJPNDTMRX-UHFFFAOYSA-N 0.000 description 1
- 125000000404 glutamine group Chemical group N[C@@H](CCC(N)=O)C(=O)* 0.000 description 1
- 230000013595 glycosylation Effects 0.000 description 1
- 238000006206 glycosylation reaction Methods 0.000 description 1
- 210000004209 hair Anatomy 0.000 description 1
- 229910052736 halogen Inorganic materials 0.000 description 1
- 150000002367 halogens Chemical class 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- VBZWSGALLODQNC-UHFFFAOYSA-N hexafluoroacetone Chemical compound FC(F)(F)C(=O)C(F)(F)F VBZWSGALLODQNC-UHFFFAOYSA-N 0.000 description 1
- 238000000265 homogenisation Methods 0.000 description 1
- 229910052739 hydrogen Inorganic materials 0.000 description 1
- 239000001257 hydrogen Substances 0.000 description 1
- 238000001114 immunoprecipitation Methods 0.000 description 1
- PNDZEEPOYCVIIY-UHFFFAOYSA-N indo-1 Chemical compound CC1=CC=C(N(CC(O)=O)CC(O)=O)C(OCCOC=2C(=CC=C(C=2)C=2N=C3[CH]C(=CC=C3C=2)C(O)=O)N(CC(O)=O)CC(O)=O)=C1 PNDZEEPOYCVIIY-UHFFFAOYSA-N 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- 239000003112 inhibitor Substances 0.000 description 1
- 230000002401 inhibitory effect Effects 0.000 description 1
- 206010023497 kuru Diseases 0.000 description 1
- 239000003446 ligand Substances 0.000 description 1
- 230000029226 lipidation Effects 0.000 description 1
- IOOMXAQUNPWDLL-UHFFFAOYSA-M lissamine rhodamine anion Chemical compound C=12C=CC(=[N+](CC)CC)C=C2OC2=CC(N(CC)CC)=CC=C2C=1C1=CC=C(S([O-])(=O)=O)C=C1S([O-])(=O)=O IOOMXAQUNPWDLL-UHFFFAOYSA-M 0.000 description 1
- 230000004807 localization Effects 0.000 description 1
- DLBFLQKQABVKGT-UHFFFAOYSA-L lucifer yellow dye Chemical compound [Li+].[Li+].[O-]S(=O)(=O)C1=CC(C(N(C(=O)NN)C2=O)=O)=C3C2=CC(S([O-])(=O)=O)=CC3=C1N DLBFLQKQABVKGT-UHFFFAOYSA-L 0.000 description 1
- HWYHZTIRURJOHG-UHFFFAOYSA-N luminol Chemical compound O=C1NNC(=O)C2=C1C(N)=CC=C2 HWYHZTIRURJOHG-UHFFFAOYSA-N 0.000 description 1
- 239000011777 magnesium Substances 0.000 description 1
- 229910052749 magnesium Inorganic materials 0.000 description 1
- NGCVJRFIBJVSFI-UHFFFAOYSA-I magnesium green Chemical compound [K+].[K+].[K+].[K+].[K+].C1=C(N(CC([O-])=O)CC([O-])=O)C(OCC(=O)[O-])=CC(NC(=O)C=2C=C3C(C4(C5=CC(Cl)=C([O-])C=C5OC5=CC([O-])=C(Cl)C=C54)OC3=O)=CC=2)=C1 NGCVJRFIBJVSFI-UHFFFAOYSA-I 0.000 description 1
- 239000006249 magnetic particle Substances 0.000 description 1
- 238000012423 maintenance Methods 0.000 description 1
- 229940107698 malachite green Drugs 0.000 description 1
- FDZZZRQASAIRJF-UHFFFAOYSA-M malachite green Chemical compound [Cl-].C1=CC(N(C)C)=CC=C1C(C=1C=CC=CC=1)=C1C=CC(=[N+](C)C)C=C1 FDZZZRQASAIRJF-UHFFFAOYSA-M 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 230000001404 mediated effect Effects 0.000 description 1
- 208000023356 medullary thyroid gland carcinoma Diseases 0.000 description 1
- 229960000901 mepacrine Drugs 0.000 description 1
- 108020004999 messenger RNA Proteins 0.000 description 1
- 229910052751 metal Inorganic materials 0.000 description 1
- 239000002184 metal Substances 0.000 description 1
- 229910021645 metal ion Inorganic materials 0.000 description 1
- 229930182817 methionine Natural products 0.000 description 1
- DWCZIOOZPIDHAB-UHFFFAOYSA-L methyl green Chemical compound [Cl-].[Cl-].C1=CC(N(C)C)=CC=C1C(C=1C=CC(=CC=1)[N+](C)(C)C)=C1C=CC(=[N+](C)C)C=C1 DWCZIOOZPIDHAB-UHFFFAOYSA-L 0.000 description 1
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 description 1
- VWKNUUOGGLNRNZ-UHFFFAOYSA-N methylbimane Chemical compound CC1=C(C)C(=O)N2N1C(C)=C(C)C2=O VWKNUUOGGLNRNZ-UHFFFAOYSA-N 0.000 description 1
- 230000000813 microbial effect Effects 0.000 description 1
- CFCUWKMKBJTWLW-BKHRDMLASA-N mithramycin Chemical compound O([C@@H]1C[C@@H](O[C@H](C)[C@H]1O)OC=1C=C2C=C3C[C@H]([C@@H](C(=O)C3=C(O)C2=C(O)C=1C)O[C@@H]1O[C@H](C)[C@@H](O)[C@H](O[C@@H]2O[C@H](C)[C@H](O)[C@H](O[C@@H]3O[C@H](C)[C@@H](O)[C@@](C)(O)C3)C2)C1)[C@H](OC)C(=O)[C@@H](O)[C@@H](C)O)[C@H]1C[C@@H](O)[C@H](O)[C@@H](C)O1 CFCUWKMKBJTWLW-BKHRDMLASA-N 0.000 description 1
- FZTMEYOUQQFBJR-UHFFFAOYSA-M mitoTracker Orange Chemical compound [Cl-].C=12C=CC(=[N+](C)C)C=C2OC2=CC(N(C)C)=CC=C2C=1C1=CC=C(CCl)C=C1 FZTMEYOUQQFBJR-UHFFFAOYSA-M 0.000 description 1
- IKEOZQLIVHGQLJ-UHFFFAOYSA-M mitoTracker Red Chemical compound [Cl-].C1=CC(CCl)=CC=C1C(C1=CC=2CCCN3CCCC(C=23)=C1O1)=C2C1=C(CCC1)C3=[N+]1CCCC3=C2 IKEOZQLIVHGQLJ-UHFFFAOYSA-M 0.000 description 1
- 238000002156 mixing Methods 0.000 description 1
- 238000010369 molecular cloning Methods 0.000 description 1
- 230000009456 molecular mechanism Effects 0.000 description 1
- SUIPVTCEECPFIB-UHFFFAOYSA-N monochlorobimane Chemical compound ClCC1=C(C)C(=O)N2N1C(C)=C(C)C2=O SUIPVTCEECPFIB-UHFFFAOYSA-N 0.000 description 1
- MLEBFEHOJICQQS-UHFFFAOYSA-N monodansylcadaverine Chemical compound C1=CC=C2C(N(C)C)=CC=CC2=C1S(=O)(=O)NCCCCCN MLEBFEHOJICQQS-UHFFFAOYSA-N 0.000 description 1
- 238000002703 mutagenesis Methods 0.000 description 1
- 231100000350 mutagenesis Toxicity 0.000 description 1
- VMGAPWLDMVPYIA-HIDZBRGKSA-N n'-amino-n-iminomethanimidamide Chemical compound N\N=C\N=N VMGAPWLDMVPYIA-HIDZBRGKSA-N 0.000 description 1
- VMCOQLKKSNQANE-UHFFFAOYSA-N n,n-dimethyl-4-[6-[6-(4-methylpiperazin-1-yl)-1h-benzimidazol-2-yl]-1h-benzimidazol-2-yl]aniline Chemical compound C1=CC(N(C)C)=CC=C1C1=NC2=CC=C(C=3NC4=CC(=CC=C4N=3)N3CCN(C)CC3)C=C2N1 VMCOQLKKSNQANE-UHFFFAOYSA-N 0.000 description 1
- CSJXLKVNKAXFSI-UHFFFAOYSA-N n-(2-aminoethyl)-5-(dimethylamino)naphthalene-1-sulfonamide Chemical compound C1=CC=C2C(N(C)C)=CC=CC2=C1S(=O)(=O)NCCN CSJXLKVNKAXFSI-UHFFFAOYSA-N 0.000 description 1
- HSEVJGUFKSTHMH-UHFFFAOYSA-N n-(2-chloroethyl)-n-ethyl-3-methyl-4-[2-(1,3,3-trimethylindol-1-ium-2-yl)ethenyl]aniline Chemical compound CC1=CC(N(CCCl)CC)=CC=C1C=CC1=[N+](C)C2=CC=CC=C2C1(C)C HSEVJGUFKSTHMH-UHFFFAOYSA-N 0.000 description 1
- 208000015122 neurodegenerative disease Diseases 0.000 description 1
- 210000002682 neurofibrillary tangle Anatomy 0.000 description 1
- 210000005044 neurofilament Anatomy 0.000 description 1
- 210000002569 neuron Anatomy 0.000 description 1
- 230000002981 neuropathic effect Effects 0.000 description 1
- 229930027945 nicotinamide-adenine dinucleotide Natural products 0.000 description 1
- VOFUROIFQGPCGE-UHFFFAOYSA-N nile red Chemical compound C1=CC=C2C3=NC4=CC=C(N(CC)CC)C=C4OC3=CC(=O)C2=C1 VOFUROIFQGPCGE-UHFFFAOYSA-N 0.000 description 1
- 229910052757 nitrogen Inorganic materials 0.000 description 1
- 125000004433 nitrogen atom Chemical group N* 0.000 description 1
- 229960002748 norepinephrine Drugs 0.000 description 1
- SFLSHLFXELFNJZ-UHFFFAOYSA-N norepinephrine Natural products NCC(O)C1=CC=C(O)C(O)=C1 SFLSHLFXELFNJZ-UHFFFAOYSA-N 0.000 description 1
- 230000006911 nucleation Effects 0.000 description 1
- 238000010899 nucleation Methods 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- QIQXTHQIDYTFRH-UHFFFAOYSA-N octadecanoic acid Chemical compound CCCCCCCCCCCCCCCCCC(O)=O QIQXTHQIDYTFRH-UHFFFAOYSA-N 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- 125000004430 oxygen atom Chemical group O* 0.000 description 1
- QVGXLLKOCUKJST-BJUDXGSMSA-N oxygen-15 atom Chemical compound [15O] QVGXLLKOCUKJST-BJUDXGSMSA-N 0.000 description 1
- VYNDHICBIRRPFP-UHFFFAOYSA-N pacific blue Chemical compound FC1=C(O)C(F)=C2OC(=O)C(C(=O)O)=CC2=C1 VYNDHICBIRRPFP-UHFFFAOYSA-N 0.000 description 1
- 244000052769 pathogen Species 0.000 description 1
- 230000008506 pathogenesis Effects 0.000 description 1
- 230000001717 pathogenic effect Effects 0.000 description 1
- 230000007170 pathology Effects 0.000 description 1
- 238000010647 peptide synthesis reaction Methods 0.000 description 1
- 239000000816 peptidomimetic Substances 0.000 description 1
- 239000000825 pharmaceutical preparation Substances 0.000 description 1
- 229940127557 pharmaceutical product Drugs 0.000 description 1
- NTGBUUXKGAZMSE-UHFFFAOYSA-N phenyl n-[4-[4-(4-methoxyphenyl)piperazin-1-yl]phenyl]carbamate Chemical compound C1=CC(OC)=CC=C1N1CCN(C=2C=CC(NC(=O)OC=3C=CC=CC=3)=CC=2)CC1 NTGBUUXKGAZMSE-UHFFFAOYSA-N 0.000 description 1
- 239000005080 phosphorescent agent Substances 0.000 description 1
- 230000026731 phosphorylation Effects 0.000 description 1
- 238000006366 phosphorylation reaction Methods 0.000 description 1
- INAAIJLSXJJHOZ-UHFFFAOYSA-N pibenzimol Chemical compound C1CN(C)CCN1C1=CC=C(N=C(N2)C=3C=C4NC(=NC4=CC=3)C=3C=CC(O)=CC=3)C2=C1 INAAIJLSXJJHOZ-UHFFFAOYSA-N 0.000 description 1
- 229960003171 plicamycin Drugs 0.000 description 1
- 230000010287 polarization Effects 0.000 description 1
- 229920000889 poly(m-phenylene isophthalamide) Polymers 0.000 description 1
- 238000002264 polyacrylamide gel electrophoresis Methods 0.000 description 1
- 230000007824 polyneuropathy Effects 0.000 description 1
- 208000022256 primary systemic amyloidosis Diseases 0.000 description 1
- XJMOSONTPMZWPB-UHFFFAOYSA-M propidium iodide Chemical compound [I-].[I-].C12=CC(N)=CC=C2C2=CC=C(N)C=C2[N+](CCC[N+](C)(CC)CC)=C1C1=CC=CC=C1 XJMOSONTPMZWPB-UHFFFAOYSA-M 0.000 description 1
- 125000001436 propyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 235000019419 proteases Nutrition 0.000 description 1
- 230000018883 protein targeting Effects 0.000 description 1
- KXXXUIKPSVVSAW-UHFFFAOYSA-K pyranine Chemical compound [Na+].[Na+].[Na+].C1=C2C(O)=CC(S([O-])(=O)=O)=C(C=C3)C2=C2C3=C(S([O-])(=O)=O)C=C(S([O-])(=O)=O)C2=C1 KXXXUIKPSVVSAW-UHFFFAOYSA-K 0.000 description 1
- AJMSJNPWXJCWOK-UHFFFAOYSA-N pyren-1-yl butanoate Chemical compound C1=C2C(OC(=O)CCC)=CC=C(C=C3)C2=C2C3=CC=CC2=C1 AJMSJNPWXJCWOK-UHFFFAOYSA-N 0.000 description 1
- CXZRDVVUVDYSCQ-UHFFFAOYSA-M pyronin B Chemical compound [Cl-].C1=CC(=[N+](CC)CC)C=C2OC3=CC(N(CC)CC)=CC=C3C=C21 CXZRDVVUVDYSCQ-UHFFFAOYSA-M 0.000 description 1
- 238000011002 quantification Methods 0.000 description 1
- GPKJTRJOBQGKQK-UHFFFAOYSA-N quinacrine Chemical compound C1=C(OC)C=C2C(NC(C)CCCN(CC)CC)=C(C=CC(Cl)=C3)C3=NC2=C1 GPKJTRJOBQGKQK-UHFFFAOYSA-N 0.000 description 1
- UKOBAUFLOGFCMV-UHFFFAOYSA-N quinacrine mustard Chemical compound C1=C(Cl)C=CC2=C(NC(C)CCCN(CCCl)CCCl)C3=CC(OC)=CC=C3N=C21 UKOBAUFLOGFCMV-UHFFFAOYSA-N 0.000 description 1
- 230000002285 radioactive effect Effects 0.000 description 1
- 239000000700 radioactive tracer Substances 0.000 description 1
- 108010054624 red fluorescent protein Proteins 0.000 description 1
- 230000009467 reduction Effects 0.000 description 1
- BOLDJAUMGUJJKM-LSDHHAIUSA-N renifolin D Natural products CC(=C)[C@@H]1Cc2c(O)c(O)ccc2[C@H]1CC(=O)c3ccc(O)cc3O BOLDJAUMGUJJKM-LSDHHAIUSA-N 0.000 description 1
- HSSLDCABUXLXKM-UHFFFAOYSA-N resorufin Chemical compound C1=CC(=O)C=C2OC3=CC(O)=CC=C3N=C21 HSSLDCABUXLXKM-UHFFFAOYSA-N 0.000 description 1
- 230000000717 retained effect Effects 0.000 description 1
- MYFATKRONKHHQL-UHFFFAOYSA-N rhodamine 123 Chemical compound [Cl-].COC(=O)C1=CC=CC=C1C1=C2C=CC(=[NH2+])C=C2OC2=CC(N)=CC=C21 MYFATKRONKHHQL-UHFFFAOYSA-N 0.000 description 1
- XFKVYXCRNATCOO-UHFFFAOYSA-M rhodamine 6G Chemical compound [Cl-].C=12C=C(C)C(NCC)=CC2=[O+]C=2C=C(NCC)C(C)=CC=2C=1C1=CC=CC=C1C(=O)OCC XFKVYXCRNATCOO-UHFFFAOYSA-M 0.000 description 1
- 102200089551 rs5030826 Human genes 0.000 description 1
- 239000010979 ruby Substances 0.000 description 1
- 229910001750 ruby Inorganic materials 0.000 description 1
- 210000003296 saliva Anatomy 0.000 description 1
- 239000012723 sample buffer Substances 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 230000028327 secretion Effects 0.000 description 1
- 238000001338 self-assembly Methods 0.000 description 1
- 239000004054 semiconductor nanocrystal Substances 0.000 description 1
- DYPYMMHZGRPOCK-UHFFFAOYSA-N seminaphtharhodafluor Chemical compound O1C(=O)C2=CC=CC=C2C21C(C=CC=1C3=CC=C(O)C=1)=C3OC1=CC(N)=CC=C21 DYPYMMHZGRPOCK-UHFFFAOYSA-N 0.000 description 1
- 229940076279 serotonin Drugs 0.000 description 1
- 150000004666 short chain fatty acids Chemical class 0.000 description 1
- ZSOMPVKQDGLTOT-UHFFFAOYSA-J sodium green Chemical compound C[N+](C)(C)C.C[N+](C)(C)C.C[N+](C)(C)C.C[N+](C)(C)C.COC=1C=C(NC(=O)C=2C=C(C(=CC=2)C2=C3C=C(Cl)C(=O)C=C3OC3=CC([O-])=C(Cl)C=C32)C([O-])=O)C(OC)=CC=1N(CCOCC1)CCOCCOCCN1C(C(=C1)OC)=CC(OC)=C1NC(=O)C1=CC=C(C2=C3C=C(Cl)C(=O)C=C3OC3=CC([O-])=C(Cl)C=C32)C(C([O-])=O)=C1 ZSOMPVKQDGLTOT-UHFFFAOYSA-J 0.000 description 1
- 239000001488 sodium phosphate Substances 0.000 description 1
- 229910000162 sodium phosphate Inorganic materials 0.000 description 1
- UGJCNRLBGKEGEH-UHFFFAOYSA-N sodium-binding benzofuran isophthalate Chemical compound COC1=CC=2C=C(C=3C(=CC(=CC=3)C(O)=O)C(O)=O)OC=2C=C1N(CCOCC1)CCOCCOCCN1C(C(=CC=1C=2)OC)=CC=1OC=2C1=CC=C(C(O)=O)C=C1C(O)=O UGJCNRLBGKEGEH-UHFFFAOYSA-N 0.000 description 1
- 239000007790 solid phase Substances 0.000 description 1
- 238000000527 sonication Methods 0.000 description 1
- 230000003595 spectral effect Effects 0.000 description 1
- 230000000087 stabilizing effect Effects 0.000 description 1
- 125000001424 substituent group Chemical group 0.000 description 1
- 125000004434 sulfur atom Chemical group 0.000 description 1
- 239000006228 supernatant Substances 0.000 description 1
- 238000003786 synthesis reaction Methods 0.000 description 1
- 230000002123 temporal effect Effects 0.000 description 1
- 229960002180 tetracycline Drugs 0.000 description 1
- 229930101283 tetracycline Natural products 0.000 description 1
- 235000019364 tetracycline Nutrition 0.000 description 1
- 150000003522 tetracyclines Chemical class 0.000 description 1
- WGTODYJZXSJIAG-UHFFFAOYSA-N tetramethylrhodamine chloride Chemical compound [Cl-].C=12C=CC(N(C)C)=CC2=[O+]C2=CC(N(C)C)=CC=C2C=1C1=CC=CC=C1C(O)=O WGTODYJZXSJIAG-UHFFFAOYSA-N 0.000 description 1
- LQSATJAZEBYDQQ-UHFFFAOYSA-J tetrapotassium;2-[4-[bis(carboxylatomethyl)amino]-3-(carboxylatomethoxy)phenyl]-1h-indole-6-carboxylate Chemical compound [K+].[K+].[K+].[K+].C1=C(N(CC([O-])=O)CC([O-])=O)C(OCC(=O)[O-])=CC(C=2NC3=CC(=CC=C3C=2)C([O-])=O)=C1 LQSATJAZEBYDQQ-UHFFFAOYSA-J 0.000 description 1
- QOFZZTBWWJNFCA-UHFFFAOYSA-N texas red-X Chemical compound [O-]S(=O)(=O)C1=CC(S(=O)(=O)NCCCCCC(=O)O)=CC=C1C(C1=CC=2CCCN3CCCC(C=23)=C1O1)=C2C1=C(CCC1)C3=[N+]1CCCC3=C2 QOFZZTBWWJNFCA-UHFFFAOYSA-N 0.000 description 1
- ACOJCCLIDPZYJC-UHFFFAOYSA-M thiazole orange Chemical compound CC1=CC=C(S([O-])(=O)=O)C=C1.C1=CC=C2C(C=C3N(C4=CC=CC=C4S3)C)=CC=[N+](C)C2=C1 ACOJCCLIDPZYJC-UHFFFAOYSA-M 0.000 description 1
- 150000003568 thioethers Chemical class 0.000 description 1
- JADVWWSKYZXRGX-UHFFFAOYSA-M thioflavine T Chemical compound [Cl-].C1=CC(N(C)C)=CC=C1C1=[N+](C)C2=CC=C(C)C=C2S1 JADVWWSKYZXRGX-UHFFFAOYSA-M 0.000 description 1
- 125000003396 thiol group Chemical group [H]S* 0.000 description 1
- 230000036962 time dependent Effects 0.000 description 1
- 230000001052 transient effect Effects 0.000 description 1
- RYFMWSXOAZQYPI-UHFFFAOYSA-K trisodium phosphate Chemical compound [Na+].[Na+].[Na+].[O-]P([O-])([O-])=O RYFMWSXOAZQYPI-UHFFFAOYSA-K 0.000 description 1
- 125000000430 tryptophan group Chemical group [H]N([H])C(C(=O)O*)C([H])([H])C1=C([H])N([H])C2=C([H])C([H])=C([H])C([H])=C12 0.000 description 1
- OUYCCCASQSFEME-UHFFFAOYSA-N tyrosine Natural products OC(=O)C(N)CC1=CC=C(O)C=C1 OUYCCCASQSFEME-UHFFFAOYSA-N 0.000 description 1
- 125000001493 tyrosinyl group Chemical group [H]OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])C([H])(N([H])[H])C(*)=O 0.000 description 1
- ORHBXUUXSCNDEV-UHFFFAOYSA-N umbelliferone Chemical compound C1=CC(=O)OC2=CC(O)=CC=C21 ORHBXUUXSCNDEV-UHFFFAOYSA-N 0.000 description 1
- HFTAFOQKODTIJY-UHFFFAOYSA-N umbelliferone Natural products Cc1cc2C=CC(=O)Oc2cc1OCC=CC(C)(C)O HFTAFOQKODTIJY-UHFFFAOYSA-N 0.000 description 1
- 210000002700 urine Anatomy 0.000 description 1
- 239000008096 xylene Substances 0.000 description 1
Images
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
- G01N33/582—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances with fluorescent label
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
- A61P25/14—Drugs for disorders of the nervous system for treating abnormal movements, e.g. chorea, dyskinesia
- A61P25/16—Anti-Parkinson drugs
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
- A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/001—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof by chemical synthesis
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
- C07K14/4701—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
- C07K14/4711—Alzheimer's disease; Amyloid plaque core protein
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K19/00—Hybrid peptides, i.e. peptides covalently bound to nucleic acids, or non-covalently bound protein-protein complexes
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/536—Immunoassay; Biospecific binding assay; Materials therefor with immune complex formed in liquid phase
- G01N33/542—Immunoassay; Biospecific binding assay; Materials therefor with immune complex formed in liquid phase with steric inhibition or signal modification, e.g. fluorescent quenching
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6893—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to diseases not provided for elsewhere
- G01N33/6896—Neurological disorders, e.g. Alzheimer's disease
Definitions
- the present invention provides conformationally dynamic peptides that are useful, for example, for detecting target proteins having a specific conformation, including misfolded proteins or proteins having a ⁇ -sheet secondary structure which may be associated with a disease. Also provided are methods of detecting such target proteins, diagnosing diseases associated with such target proteins or risk thereof, and treating diseases associated with such target proteins.
- AD Alzheimer's disease
- a ⁇ amyloid beta
- misfolded proteins associated with disease include prions in transmissible spongiform encephalopathy (TSE), cerebral amyloid angiopathy (CAA), and cerebral vascular disease (CVD); ⁇ -synuclein deposits in Lewy bodies of Parkinson's disease, tau in neurofibrillary tangles in frontal temporal dementia and Pick's disease; superoxide dismutase in amylotrophic lateral sclerosis; and Huntingtin in Huntington's disease. See, e.g., Glenner et al., J. Neurol. Sci. 94:1-28, 1989; Haan et al., Clin. Neurol. Neurosurg. 92(4):305-310, 1990.
- U.S. Pat. No. 7,166,471, US 2006/0286672, US 2005/0026165, US 2008/0171341, US 2006/0057671 and US 2008/0095706 describe peptides useful for the detection of, for example, misfolded proteins, target protein having a predominantly ⁇ -sheet secondary structure, and target protein in a specific state of self-aggregation.
- the peptides described herein can be used in the methods described in any of these patent documents, the contents of each of which are incorporated herein by reference in their entirety.
- peptide probes for a target protein capable of exhibiting a ⁇ -sheet conformation associated with an amyloidogenic disease wherein the peptide probe (i) consists of from 10 to 50 amino acid residues comprising an amino acid sequence that is a variant of a reference sequence consisting of an amino acid sequence of a ⁇ -sheet forming region of the target protein, (ii) is capable of adopting both a random coil/alpha-helix conformation and a ⁇ -sheet conformation, and (iii) adopts a ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation or undergoes a change in conformation that generates a detectable signal upon binding to target protein.
- the variant sequence comprises one or more amino acid additions, substitutions or deletions relative to the reference sequence, such that (A) the random coil/alpha-helix conformation of the variant sequence is more stable in an oxidizing environment than a probe consisting of the reference amino acid sequence and/or (B) the distance between the N-terminus and the C-terminus of the variant sequence in a random coil/alpha-helix conformation differs from the distance between the N-terminus and the C-terminus of the variant sequence in a ⁇ -sheet conformation and/or (C) the variant sequence adopts a ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation more efficiently than the reference sequence and/or (D) the variant sequence adopts a less ordered conformation upon binding to target protein exhibiting a ⁇ -sheet conformation and/or (E) the ⁇ -sheet structure of the variant sequence is less thermodynamically strong than that of the reference sequence and/or (F) the variant sequence has increased stability and/or decreased reactivity than the reference sequence
- the peptide probe is labeled with a detectable label, such as a fluorescent label, at the N-terminus, the C-terminus, both termini, or at one or more positions that generate a signal when the peptide adopts a ⁇ -sheet conformation or undergoes a conformation change upon binding to target protein.
- the peptide probe is labeled with two or more labels, wherein the distance between two or more labels on the peptide probe when the peptide probe is bound to target protein is different than the distance when the peptide probe is not bound to target protein.
- the signal generated by the detectable label when the peptide probe is bound to target protein is different than the signal generated when the peptide probe is not bound to target protein, such such as the signal when the peptide probe exhibits a ⁇ -sheet conformation being greater than the signal generated when the peptide probe exhibits a random coil/alpha-helix conformation.
- the peptide probe may be labeled with a detectable label pair selected from an excimer pair, a FRET pair and a fluorophore/quencher pair.
- the peptide probe When the peptide probe is labeled with an excimer pair, such as a pyrene pair, it may emit an excimer signal when the peptide probe exhibits a ⁇ -sheet conformation.
- an excimer pair such as a pyrene pair
- FRET pair such as DACIA-I/NBD, Marina Blue/NBD, dansyl/Trp, and EDANS/FAM
- FRET fluorescence resonance transfer
- the fluorphore signal may be quenched when the peptide probe exhibits a ⁇ -sheet conformation.
- the one or more amino acid additions, substitutions or deletions in the peptide probe are made at an internal portion of the reference sequence, or are made at the N-terminus or C-terminus of the reference sequence, or at both termini, or internally and terminally.
- the variant sequence comprises the substitution of a methionine residue with a residue resistant to oxidation, such as an alanine residue. In some embodiments, the variant sequence comprises the substitution of at least three consecutive residues of the reference sequence with alanine residues.
- the one or more amino acid additions, substitutions or deletions introduces a salt bridge between two residues, such as between a glutamic acid residue and a histidine residue, a glutamic acid residue and an arginine residue, and/or a glutamic acid residue and a lysine residue.
- the one or more amino acid additions, substitutions or deletions introduces an A ⁇ binding motif into the peptide probe, such as a GXXEG motif (SEQ ID NO:25).
- the variant sequence adopts a less ordered conformation upon binding to target protein exhibiting a ⁇ -sheet conformation.
- the target protein is AO protein
- the variant sequence comprises one or more substitutions selected from the group consisting of G29H, G29R, G29K, and G33E.
- the ⁇ -sheet structure of the variant sequence may be less thermodynamically strong than that of the reference sequence.
- the variant sequence comprises one or more substitutions selected from the group consisting of 132S, F19S, S26D, H29D, 131D, L34D, and L34P.
- the variant sequence has an increased hydrophilicity and/or solubility in aqueous solutions than the reference sequence.
- the variant sequence comprises one or more amino acid additions or substitutions that introduce a glutamic acid residue and/or a d-arginine residue.
- the variant sequence may be conjugated to a hydrophilic moiety, such as a soluble polyethylene glycol moiety.
- a detectable label may be conjugated to a side chain of a terminal lysine residue of the peptide probe, and/or to a side chain of an internal lysine residue of the peptide probe.
- the peptide probe may be conjugated to a biotin moiety, such as through a peptide linker.
- the peptide linker is selected from the group consisting of a flexible linker, a helical linker, a thrombin site linker and a kinked linker.
- the linker comprises an amino acid sequence selected from the group consisting of SEQ ID NO:56-60.
- the peptide probe is conjugated to a biotin moiety through a side chain of an internal lysine residue.
- the peptide probe is a peptide or peptide mimic that (i) consists of from 10 to 50 amino acid residues comprising an amino acid sequence that is a variant of a reference sequence consisting of an amino acid sequence of a ⁇ -sheet forming region of the target protein, (ii) is capable of adopting both a random coil/alpha-helix conformation and a ⁇ -sheet conformation, and (iii) adopts a less ordered conformation upon binding to target protein.
- such a peptide probe is labeled with a detectable label at the N-terminus, the C-terminus, both termini, or at one or more positions that generate a signal when the peptide undergoes a conformation change upon binding to target protein, such as being labeled with a detectable label pair selected from an excimer pair, a FRET pair and a fluorophore/quencher pair.
- the peptide probe is labeled with an excimer pair (such as two pyrene moieties) and emits an increased excimer signal when the peptide probe is not bound to target protein and emits an increased self signal when the peptide probe is bound to target protein.
- the peptide probe is labeled with a FRET pair and emits an increased a fluorescence resonance transfer (FRET) signal when the peptide probe is not bound to target protein and emits a non-FRET fluorophore signal when the peptide probe is bound to target protein.
- FRET fluorescence resonance transfer
- the peptide probe is labeled with a fluorophore/quencher pair and emits a decreased or quenched signal when the peptide probe is not bound to target protein and emits a fluorophore signal when the peptide probe is bound to target protein.
- the variant sequence may comprise or consist of an amino acid sequence selected from the group consisting of SEQ ID NOs: 2-55.
- the variant sequence comprises or consists of the amino acid sequence of SEQ ID NO:2 (Peptide 22).
- the variant sequence comprises the substitution of at least one residue with a glutamic acid residue. In some embodiments, the variant sequence comprises the substitution of at least one residue with a histidine residue. In some embodiments, the variant sequence comprises one or more substitutions selected from the group consisting of an isoleucine residue with a serine residue; glutamic acid residue with either a proline residue, a glycine residue, a glutamine residue or a lysine residue; a phenylalanine residue with a serine residue; a leucine residue with a proline residue; an alanine residue with a glycine residue; and an aspartic acid residue with an asparagine residue. In some embodiments, the variant sequence comprises the addition of a lysine residue at the C-terminus. In some embodiments, the peptide probe comprises an amino acid sequence selected from the group consisting of SEQ ID NOs:2-8.
- a method for detecting target protein in a test sample, wherein the target protein exhibits a ⁇ -sheet conformation associated with an amyloidogenic disease comprising (i) contacting the sample with any peptide probe described herein to form a test mixture; and (ii) detecting any binding between the peptide probe and any target protein present.
- step (ii) comprises detecting any signal generated by the fluorescent label of peptide probe exhibiting a ⁇ -sheet conformation or undergoing a conformational change upon binding to a target protein.
- step (ii) comprises detecting complexes comprising the peptide probe and target protein by detecting any signal generated by any detectable label (such as a fluorescent label) present in the complexes.
- the complexes are insoluble complexes (such as amyloid beta fibrils) and step (ii) comprises detecting any signal generated by any detectable label (such as a fluorescent label) present in the insoluble complexes.
- the complexes are soluble complexes (such as amyloid beta oligomers) and step (ii) comprises detecting any signal generated by any detectable label (such as a fluorescent label) present in the soluble complexes.
- the method further comprises, prior to step (ii), separating the complexes from the test mixture by a process comprising centrifugation, size exclusion chromatography, or affinity chromatography.
- a method for detecting target protein associated with an amyloidogenic disease comprising (A) contacting the sample with a peptide probe that is a peptide or peptide mimic that (i) consists of from 10 to 50 amino acid residues comprising an amino acid sequence that is a variant of a reference sequence consisting of an amino acid sequence of a ⁇ -sheet forming region of the target protein, (ii) is capable of adopting both a random coil/alpha-helix conformation and a ⁇ -sheet conformation, and (iii) adopts a less ordered conformation upon binding to target protein; and (B) detecting any association between said probe and any target protein present in the sample.
- the peptide probe is labeled with a detectable label at the N-terminus, the C-terminus, both termini, or at one or more positions that generate a signal when the peptide undergoes a conformation change upon binding to target protein.
- the peptide probe is labeled with an excimer pair and step (ii) comprises detecting any increased self signal or decreased excimer signal.
- the peptide probe is labeled with a FRET pair and step (ii) comprises detecting any increased non-FRET fluorophore signal or decreased FRET signal.
- the peptide probe is labeled with a fluorophore/quencher pair and step (ii) comprises detecting any increased fluorophore signal.
- an in vivo method for detecting target protein associated with an amyloidogenic disease in subject comprising (A) administering to the subject any peptide probe as described herein, wherein the probe is labeled with a detectable label that generates a signal when the probe binds to target protein and (B) detecting the signal.
- the signal is detected using an imaging technique, such as positron emission tomography (PET), single photon emission computed tomography (SPECT), magnetic resonance imaging (MRI), radiography, tomography, fluoroscopy, nuclear medicine, optical imaging, encephalography and ultrasonography.
- a method of treating a subject suffering from or at risk of developing an amyloidogenic disease comprising administering to the subject any peptide probe described herein.
- the probe is conjugated to an additional therapeutic agent against said amyloidogenic disease.
- the target protein may selected from the group consisting of amyloid islet polypeptide precursor protein, amyloid beta protein, A ⁇ peptide, serum amyloid A, insulin, amylin, non-amyloid beta component, prions, hemoglobin, immunoglobulins or fragments thereof ⁇ 2-microglobulin, ⁇ -synuclein, rhodopsin, ⁇ 1-antichymotrypsin, cystallins, tau, p53, presenilins, low-density lipoprotein receptor, apolipoproteins, superoxide dismutase, neurofilament proteins, transthyretin, procalcitonin or calcitonin, atrial natriuretic factor, gelsolin, cystic fibrosis transmembrane regulator, Huntington's disease protein, fibrinogen alpha-chain, phenylalanine hydroxylase, collagen, beta-hexosaminidase, and cyst
- FIG. 1A illustrates the in silico predictions for the distribution of inter-pyrene distances of pyrenes conjugated to each terminus of a peptide corresponding to a region of the A ⁇ peptide, depending on the solvent environment of the pyrenated peptide (left panel:water, right panel; 40% TFE).
- FIG. 1B illustrates the close physical proximity of pyrene moieties conjugated to the N- and C-termini of a peptide when the peptide is in a ⁇ -sheet conformation.
- FIG. 1C illustrates the distance between pyrene moieties conjugated to the N- and C-termini of a peptide when the peptide is in a random coil/alpha-helix conformation.
- FIG. 2 sets forth specific embodiments of peptides described herein (SEQ ID NOs 2-13) and their amino acid additions and/or substitutions relative to a wildtype reference sequence (SEQ ID NO:1), which is based on amino acids 16-35 of the “wild-type” A ⁇ protein with an added lysine at the C terminus for conjugating to a fluorescent label.
- FIG. 3 illustrates the results of an in vitro centrifugation-based interaction assay using a peptide probe (SEQ ID NO:1) to detect insoluble A/ ⁇ 42 target protein fibers.
- FIGS. 4A and 4B illustrate an in vitro size exclusion chromatography-based interaction assay using a labeled peptide probe (SEQ ID NO:4) to detect soluble A/ ⁇ 42 target protein oligomers, with results illustrated in FIG. 4B , which shows that the fluorescently labeled peptide is recovered in the presence of the oligomer, indicating that the peptide probe binds the target protein oligolmers. Similar results were obtained with a labeled peptide probe of SEQ ID NO:1, as shown in FIG. 14 .
- FIGS. 5A and 5B illustrate an in vitro affinity chromatography-based interaction assay using a labeled peptide probe (SEQ ID NO:2) to detect biotin-labeled soluble A/ ⁇ 42 target protein oligomers, with results illustrated in FIG. 5B , which shows that labeled peptide probe is only detected in the captured material, in the presence of high molecular weight oligomers, indicating that the peptide probe binds the target protein oligolmers. Similar results were obtained with a labeled peptide probe of SEQ ID NO:1, as shown in FIG. 15 .
- FIG. 6A illustrates the determination of the maximal signal gain associated with a solvent-induced conformational change of a peptide described herein (Peptide 22; SEQ ID NO:2) as compared to a reference peptide (SEQ ID NO:1).
- FIG. 6B reports the results of a determination of the maximal signal gain associated with a conformational change of the peptide in the presence of fibrillar amyloid target protein, as compared to that of the reference peptide.
- FIG. 7 illustrates the effect of pH and salt concentration on the secondary structure of Peptide 38 (SEQ ID NO:3) as determined by circular dichroism spectropolarimetry (CD) analysis.
- FIG. 8 illustrates the effect of the interaction of A ⁇ 42 oligomer (target protein) on the secondary structure of Peptide 38 (SEQ ID NO:3) as determined by CD analysis.
- FIGS. 9A and B illustrate the effect of the interaction of A ⁇ 42 oligomer (target protein) on the pyrene fluorescence properties of Peptide 45 (SEQ ID NO:4).
- FIG. 9A shows the fluorescence emission of the peptide-target complex.
- FIG. 9B shows the fluorescence emission of the peptide alone.
- FIG. 10 illustrates conformational changes of peptide probes described herein upon binding to different substrates.
- Top panel A peptide probe (such as SEQ ID NO:1) labeled with pyrene at each terminus adopts increased ⁇ -sheet conformation upon binding to A ⁇ fibers in 40% TFE, as detected by an increased pyrene excimer signal.
- Bottom panel A A peptide probe (such as Peptide 22, SEQ ID NO:2) labeled with pyrene at each terminus adopts a less ordered (e.g., decreased ⁇ -sheet) conformation upon binding to A ⁇ oligomers in water, as detected by an increased pyrene monomer (“self”) signal.
- Bottom panel B A peptide probe labeled with FRET labels at each terminus adopts an increased ⁇ -sheet conformation upon binding to A ⁇ oligomers in water, as detected by the FRET signal.
- Peptide probes AD293 (SEQ ID NO:52), AD292 (SE ID NO:53), AD 291 (SEQ ID NO:54) and AD 290 (SEQ ID NO:55) have exhibited fluorescence behavior consistent with this type of conformation change.
- FIG. 11 illustrates raw fluorescence spectra for Peptide 22 (SEQ ID NO:2) labeled with pyrene at each terminus in the absence (left) and presence (right) of soluble A ⁇ oligomers.
- FIG. 12 illustrates the specificity of Peptide 22 (SEQ ID NO:2) for soluble A ⁇ oligomers.
- the first two panels show the dose-dependent increase in pyrene monomer signal when Peptide 22 is incubated with soluble A ⁇ oligomers prepared by two different methods.
- the next two panels show no change in fluorescence when Peptide 22 is incubated with A ⁇ 40 monomers and A ⁇ 42 monomers.
- the next panel shows no change in fluorescence when Peptide 22 is incubated with A ⁇ 40 fibers and the next panel shows some dose-dependent increase in monomer fluorescence when Peptide 22 is incubated with A ⁇ 42 fibers.
- FIGS. 13A and B illustrate the conformation change of Peptide 22 (SEQ ID NO:2) upon interaction with soluble A ⁇ 42 oligomers.
- FIG. 13A shows the change in fluorescence of Peptide 22 upon interaction with soluble A ⁇ 42 oligomer, with a shift from excimer to monomer fluorescence. (solid line—no A ⁇ 42 oligomer; dashed/dot line—30 nN A ⁇ 42 oligomer; large dashed line—100 nN A ⁇ 42 oligomer; small dashed line—300 nN A ⁇ 42 oligomer)
- 13B shows the secondary structure of Peptide 22 as determined by CD analysis, which does not detect a conformation change in the presence of A ⁇ 42 oligomer that is detectable by the change in pyrene fluorescence.
- solid line Peptide 22; dashed/dot line —A ⁇ 42 oligomer; large dashed line—arithmetic sum of results of individual samples; small dashed line—mixture of Peptide 22 and A ⁇ 42 oligomer
- FIGS. 14A and 14B illustrate an in vitro size exclusion chromatography-based interaction assay using a labeled peptide probe (SEQ ID NO:1) to detect soluble A ⁇ 42 target protein oligomers, with results illustrated in FIG. 14B , which shows that the fluorescently labeled peptide is recovered in the presence of the oligomer, indicating that the peptide probe binds the target protein oligolmers.
- SEQ ID NO:1 labeled peptide probe
- FIGS. 15A and 15B illustrate an in vitro affinity chromatography-based interaction assay using a labeled peptide probe (SEQ ID NO: 1) to detect biotin-labeled soluble A ⁇ 42 target protein oligomers, with results illustrated in FIG. 15B , which shows that labeled peptide probe is only detected in the captured material, in the presence of high molecular weight oligomers, indicating that the peptide probe binds the target protein oligolmers.
- SEQ ID NO: 1 labeled peptide probe
- subject denotes any animal in need of detection or therapeutic treatment, including humans and domesticated animals, such as cats, dogs, swine, cattle, sheep, goats, horses, rabbits, and the like. “Subject” also includes animals used in research settings, including mice and other small mammals. A typical subject may be at risk of a condition, disease or disorder or suspected of suffering from such a condition, or may be desirous of determining risk or status with respect to a particular condition, such as a condition, disease or disorder associated with a target protein.
- therapeutic treatment includes the administration of a therapeutic agent to treat an existing condition, to prevent a condition that the subject is at risk or developing, or for health maintenance.
- “conformation” refers to particular secondary structure of a protein or peptide, for example, an alpha-helix, random coil or ⁇ -sheet secondary structure.
- a “conformational change” is a change from one conformation to another.
- PrP protein refers to proteins associated with prion-based diseases.
- PrP protein refers to proteins associated with prion-based diseases.
- PrP protein refers to proteins associated with prion-based diseases.
- PrP protein refers to proteins associated with prion-based diseases.
- PrP protein refers to proteins associated with prion-based diseases.
- PrP protein refers to proteins associated with prion-based diseases.
- PrP protein refers to proteins associated with prion-based diseases.
- PrP C the non-infectious form
- Prion particles are comprised largely, if not exclusively, of PrP Sc molecules encoded by a PrP gene.
- prion includes all forms of prions causing all or any of these diseases or others in any animals used, and in particular in humans and domesticated farm animals.
- amyloidogenic diseases are diseases in which amyloid plaques or amyloid deposits are formed in the body. Amyloid formation is found in a number of disorders, such as diabetes, AD, scrapie, BSE, CJD, chronic wasting disease (CWD), related transmissible spongiform encephalopathies (TSEs), and other diseases disclosed herein.
- the invention is not limited to amyloidogenic diseases, however, and is useful in the diagnosis and treatment of any disease or condition associated with a specific conformation or aggregative state of a protein.
- a ⁇ protein is used herein to refer to all forms of the A ⁇ protein, including AB 40 and AB 42 .
- a ⁇ protein also includes all naturally occurring mutants, including naturally occurring mutants known to exhibit increased tendency to form aggregates. Such mutants are known in the art, such as those disclosed in Murakami et al., J. Biol. Chem. 46:46179-46187, 2003, which is incorporated herein by reference in its entirety.
- Target protein is used herein to refer to any protein suitable for targeting, detection of identification by the present invention, such as those proteins capable of a conformational change.
- Target proteins may be associated with a disease state characterized by a ⁇ -sheet conformation as described herein.
- Target proteins may be naturally occurring proteins.
- Native or “naturally occurring” proteins refer to proteins recovered from a source occurring in nature.
- a native protein would include post-translational modifications, including, but not limited to, acetylation, carboxylation, glycosylation, phosphorylation, lipidation, acylation, and cleavage.
- Protein “peptide” and “polypeptide” are used interchangeably.
- Peptide mimic is also referred to as a peptidomimic or peptidomimetic and refers to any molecule that mimics the properties of a peptide.
- Peptide mimics include polymeric molecules that mimic the folding and/or secondary structure of a specific peptide, as well as those that mimic the biological or chemical properties of a peptide.
- Peptide mimics may have an amino acid backbone and contain non-natural chemical or amino acid substitutions.
- peptide mimics may have different chemical backbones, such as (3-peptides, anthranilamide oligomers, oligo (m-phenylene ethynylene), oligourea, oligopynolinones, azatides and N-substituted glycine oligomers.
- Peptide mimics may have different chemical properties, such as resistance to proteases, while retaining peptide characteristics, such as peptide folding and peptide-peptide interactions (including, for example, interactions via hydrogen bonding, etc.). Any suitable peptide mimic can be used in the present invention, and include those designed and/or constructed as described in Chongsiriwatana, N. P, et al.
- Similarity between two polypeptides is determined by comparing the amino acid sequence of one polypeptide to the sequence of a second polypeptide.
- An amino acid of one polypeptide is similar to the corresponding amino acid of a second polypeptide if it is identical or a conservative amino acid substitution.
- Conservative substitutions include those described in Dayhoff, M. O., ed., The Atlas of Protein Sequence and Structure 5, National Biomedical Research Foundation, Washington, D.C. (1978), and in Argos, P. (1989) EMBO J. 8:779-785.
- amino acids belonging to one of the following groups represent conservative changes or substitutions:
- “Homology”, “homologs of”, “homologous”, “identity”, or “similarity” refers to sequence similarity between two polypeptides, with identity being a more strict comparison. Homology and identity may each be determined by comparing a position in each sequence that may be aligned for purposes of comparison. When a position in the compared sequence is occupied by the same amino acid, then the molecules are identical at that position.
- a degree of identity of amino acid sequences is a function of the number of identical amino acids at positions shared by the amino acid sequences.
- a degree of homology or similarity of amino acid sequences is a function of the number of amino acids, i.e., structurally related, at positions shared by the amino acid sequences.
- an “unrelated” or “non-homologous” sequence shares 10% or less identity, with one of the sequences described herein. Related sequences share more than 10% sequence identity, such as at least about 15% sequence identity, at least about 20% sequence identity, at least about 30% sequence identity, at least about 40% sequence identity, at least about 50% sequence identity, at least about 60% sequence identity, at least about 70% sequence identity, at least about 80% sequence identity, at least about 90% sequence identity, at least about 95% sequence identity, or at least about 99% sequence identity.
- percent identity refers to sequence identity between two amino acid sequences. Identity may be determined by comparing a position in each sequence that is aligned for purposes of comparison. When an equivalent position in one compared sequences is occupied by the same amino acid in the other at the same position, then the molecules are identical at that position; when the equivalent site occupied by the same or a similar amino acid residue (e.g., similar in stearic and/or electronic nature), then the molecules may be referred to as homologous (similar) at that position.
- Expression as a percentage of homology, similarity, or identity refers to a function of the number of identical or similar amino acids at positions shared by the compared sequences.
- FASTA FASTA
- BLAST BLAST
- ENTREZ is available through the National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, Md.).
- percent identity of two sequences may be determined by the GCG program with a gap weight of 1, e.g., each amino acid gap is weighted as if it were a single amino acid mismatch between the two sequences. Other techniques for determining sequence identity are well known and described in the art.
- Amyloidogenic diseases are diseases in which amyloid plaques or amyloid deposits are formed in the body. Amyloid formation is found in a number of disorders, such as diabetes, AD, scrapie, bovine spongiform encephalopathy (BSE), Creutzfeldt-Jakob disease (CJD), chronic wasting disease (CWD), related transmissible spongiform encephalopathies (TSEs).
- AD Alzheimer's disease
- CAA cerebral amyloid angiopathy
- CVD cerebral vascular disease
- amyloidogenic diseases are diseases in which amyloid plaques or amyloid deposits are formed in the body. Amyloid formation is found in a number of disorders, such as diabetes, AD, scrapie, bovine spongiform encephalopathy (BSE), Creutzfeldt-Jakob disease (CJD), chronic wasting disease (CWD), related transmissible spongiform encephalopathies (TSEs).
- a variety of diseases are associated with a specific structural form of a protein (e.g., a “misfolded protein” or a self-aggregated protein), while the protein in a different structural form (e.g., a “normal protein”) is not harmful.
- a ⁇ -sheet conformation could be a target structural state for detection of the disease, while an alpha-helix and/or random coil conformation could be a target structural state to confirm absence of the disease, or to identify absence of an advanced state of the disease.
- the normal protein is soluble, while the misfolded protein forms insoluble aggregates.
- Alzheimer's Disease A ⁇ peptide, ⁇ 1-antichymotrypsin, tau, non-A ⁇ component, presenilin 1, presenilin 2, apoE); prion diseases, CJD, scrapie, and BSE (PrPSc); ALS (SOD and neurofilament); Pick's disease (Pick body); Parkinson's disease ( ⁇ -synuclein in Lewy bodies); frontotemporal dementia (tau in fibrils); diabetes type II (amylin); multiple myeloma-plasma cell dyscrasias (IgGL-chain); familial amyloidotic polyneuropathy (transthyretin); medullary carcinoma of thyroid (procalcitonin); chronic renal failure ( ⁇ 2-microglobulin); congestive heart failure (atrial natriuretic factor); senile cardiac and systemic amyloidosis (transth)
- TSE transmissible spongiform encephalopathy
- CAA cerebral amyloid angiopathy
- CVD cerebral vascular disease
- superoxide dismutase in amylotrophic lateral sclerosis See, e.g., Glenner et al., J. Neurol. Sci. 94:1-28, 1989; Haan et al., Clin. Neural. Neurosurg. 92(4):305-310, 1990.
- amyloid can be present in cerebral and meningeal blood vessels (cerebrovascular deposits) and in brain parenchyma (plaques). Neuropathological studies in human and animal models indicate that cells proximal to amyloid deposits are disturbed in their normal functions. See, e.g., Mandybur, Acta Neuropathol. 78:329-331, 1989; Kawai et al., Brain Res. 623:142-146, 1993; Martin et al., Am. J. Pathol.
- agents capable of associating with a particular self-associating state of the diseased protein are useful diagnostic tools to detect and quantify a particular form of the misfolded protein, as well as provide insights to the progression of the disease.
- highly selective peptide agents capable of associating with specific proteins in a particular state of self-aggregation are useful, both as detection agents as well as for therapeutic applications.
- the present invention provides peptide probes and methods for detecting misfolded target protein associated with diseases.
- Such misfolded proteins may exhibit and increase in ⁇ -sheet secondary structure or conformation and may form insoluble aggregates, fibrils or deposits such as plaques that are hallmarks of such diseases.
- Amyloid beta protein is the primary causative agent in amyloiodogenic diseases such as Alzheimer's disease (AD), cerebral amyloid angiopathy (CAA), and cerebral vascular disease (CVD). Soluble A ⁇ is found in the plasma and cerebrospinal fluid of healthy individuals, and disease appears to correlate with insoluble fibrils forming plaques or aggregates found in diseased individuals.
- AD Alzheimer's disease
- CAA cerebral amyloid angiopathy
- CVD cerebral vascular disease
- Soluble A ⁇ is found in the plasma and cerebrospinal fluid of healthy individuals, and disease appears to correlate with insoluble fibrils forming plaques or aggregates found in diseased individuals.
- a ⁇ is generated by cleaving the amyloid beta precursor protein (APP) at any of several sites, resulting in several forms of A ⁇ .
- APP amyloid beta precursor protein
- a ⁇ 1-40 also referred to as A ⁇ 40
- a ⁇ 1-42 also referred to as A ⁇ 42
- a ⁇ 40 and A ⁇ 42 have identical amino acid sequences, with A ⁇ 42 having two additional residues (Ile and Ala) and its C terminus.
- a ⁇ 40 is more abundant, A ⁇ 42 is the more fibrillogenic and is the major component of the two in amyloid deposits of both AD and CAA. See, e.g., Wurth et al., J. Mol. Biol. 319: 1279-90 (2002).
- all naturally occurring mutants of A ⁇ protein can be a target protein or serve as the basis of a reference sequence in the context of the present invention.
- Elevated plasma levels of A ⁇ 42 have been associated with AD, and with increased risk for AD. Also, the magnitude of the ratio of A ⁇ 42/A ⁇ 40 levels has been shown to have clinical significance for AD, CAA, and other conditions, such as late-life depression (LLMD). See, e.g., Pomara et al. Neurochem. Res. (2006). Plasma levels of A ⁇ 42 and A ⁇ 40 are typically determined using monoclonal antibodies. In addition to the amyloid deposits in AD cases described above, most AD cases are also associated with amyloid deposition in the vascular walls. See, e.g., Vinters H. V., Stroke March-April; 18(2):311-324, 1987; Itoh Y., et al., Neurosci. Lett. 155(2):144-147, Jun. 11, 1993.
- Prions are infections pathogens that cause central nervous system spongiform encephalopathies in humans and animals.
- a potential prion precursor is a protein referred to as PrP 27-30, a 28 kilodalton hydrophobic glycoprotein that polymerizes (aggregates) into rod-like filaments found as plaques in infected brains.
- the normal prion protein (PrP C ) is a cell-surface metallo-glycoprotein that has mostly an ⁇ -helix and coiled-loop structure.
- the abnormal form (PrP Sc ) is a conformer that is resistant to proteases and has a secondary structure that contains predominantly n-sheets. It is believed that this conformational change in secondary structure leads to aggregation and eventual neurotoxic plaque deposition in the prion disease process.
- TSEs Transmissible Spongiform Encephalopathies
- BSE bovine spongiform encephalopathy
- TSEs are fatal neurodegenerative disease. These diseases are characterized by the formation and accumulation in the brain of an abnormal proteinase K resistant isoform (PrP-res) of a normal protease-sensitive, host-encoded prion protein (PrP-sen). PrP-res is formed from PrP-sen by a post-translational process involving conformational changes that convert the PrP-sen into a PrP-res molecular aggregate having a higher ⁇ -sheet content. The formation of these macromolecular aggregates of PrP-res is closely associated with TSE-mediated brain pathology, in which amyloid deposits of PrP-res are formed in the brain, which eventually becomes “spongiform” (filled with holes).
- PrP-sen is a sialoglycoprotein encoded by a gene that, in humans, is located on chromosome 20.
- the PrP gene is expressed in both neural and non-neural tissues, with the highest concentration of its mRNA being found in neurons. Sequences of Prp genes are disclosed in U.S. Pat. No. 5,565,186, which is incorporated herein by reference.
- conformationally dynamic peptides that are useful, for example, for detecting target proteins having a specific conformation, including misfolded proteins or proteins having a ⁇ -sheet secondary structure which may be associated with a disease.
- the peptides also are useful in methods of diagnosing diseases associated with such target proteins or risk thereof, and treating diseases associated with such target proteins.
- the peptides are useful as probes for a target protein capable of exhibiting or exhibiting a ⁇ -sheet conformation associated with an amyloidogenic disease.
- the peptides are capable of adopting both a random coil/alpha-helix conformation and a ( ⁇ -sheet conformation.
- the peptides adopt a ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation.
- the peptides adopt a less ordered (e.g., decreased ⁇ -sheet) conformation upon binding to target protein exhibiting a ⁇ -sheet conformation.
- Peptide probes comprising amino acid residues 16-35 of the A ⁇ protein sequence (SEQ ID NO:1) have been described previously. Such probes contain the hydrophobic core responsible for both intramolecular ⁇ -sheet formation and protein aggregation. While this “wildtype” peptide performs as expected in fiber-based assays in organic solvents (e.g., it has an alpha helical structure in 40% TFE in the absence of substrate, and undergoes a transition to a ⁇ -sheet structure upon introduction of A ⁇ fibril substrate), other properties make it less than ideal for use in in vitro assays. For example, it has a low solubility in aqueous solutions, and its ⁇ -sheet structure is thermodynamically strong and resistant to conformational change. Thus, peptide probes have been designed with more desirable properties to improve performance in in vitro assays and in vivo applications.
- the peptide probes have a variant sequence that comprises one or more amino acid additions, substitutions or deletions relative to the reference sequence, such that (A) the random coil/alpha-helix conformation of the variant sequence is more stable in an oxidizing environment than a probe consisting of the reference amino acid sequence and/or (B) the distance between the N-terminus and the C-terminus of the variant sequence in a random coil/alpha-helix conformation differs from the distance between the N-terminus and the C-terminus of the variant sequence in a ⁇ -sheet conformation and/or (C) the variant sequence adopts a ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation more efficiently than the reference sequence.
- the peptide probes may have a variant sequence that comprises one or more amino acid additions, substitutions or deletions relative to the reference sequence, such that (D) the variant sequence adopts a less ordered or decreased ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation.
- (E) the ⁇ -sheet structure of the variant sequence is less thermodynamically strong than that of a probe consisting of the reference sequence.
- the peptide probes have a variant sequence that comprises one or more amino acid additions, substitutions or deletions relative to the reference sequence, such that (F) the variant sequence has increased stability and/or decreased reactivity than a probe consisting of the reference sequence; (G) the variant sequence has an increased hydrophilicity and/or solubility in aqueous solutions than a probe consisting of the reference sequence and/or (H) the variant sequence has an additional A ⁇ binding motif than a probe consisting of the reference sequence.
- the variant sequences comprise one or more amino acid additions, substitutions or deletions relative to the reference sequence such that (I) the variant sequence has an enhanced ability to form aggregates.
- the variant sequence may comprise a truncated form of a naturally occurring mutant.
- the peptides bind to the target protein in a conformation-dependent manner and undergo a structural conversion from predominantly random coil (unstructured) or alpha-helix conformations to ⁇ -sheet rich conformations, such as upon binding to a target protein exhibiting a ⁇ -sheet conformation.
- the peptides generally change from a less ordered to a more ordered conformation. Conjugation of reporter moieties to these peptides can provide a simple mechanism for monitoring the conformational conversion (such as via a change in the fluorescent spectrum using fluorescently labeled peptides).
- the peptides bind to the target protein in a conformation-dependent manner and undergo a structural conversion from predominantly ⁇ -sheet rich conformations to a less ordered or decreased ⁇ -sheet conformations, or increased random coil (unstructured) or alpha-helix conformations, upon binding to a target protein exhibiting a ⁇ -sheet conformation.
- the peptides generally change from a more ordered to a less ordered conformation. Conjugation of reporter moieties to these peptides can provide a simple mechanism for monitoring the conformational conversion (such as via a change in the fluorescent spectrum using fluorescently labeled peptides).
- the peptides are designed (such as, for example, by the selection of specific amino acid deletions, substitutions or additions) to improve their performance in different assay conditions (such as for use in an aqueous versus organic solvent, under different pH and/or salt conditions, etc).
- the peptides described herein can be made by any method, such as direct synthesis or recombinantly.
- Standard reference works setting forth the general principles of recombinant DNA technology include Sambrook, J., et al. (1989) Molecular Cloning: A Laboratory Manual, 2d Ed., Cold Spring Harbor Laboratory Press, Planview, N.Y.; McPherson, M. J. Ed. (1991) Directed Mutagenesis: A Practical Approach, IRL Press, Oxford; Jones, J. (1992) Amino Acid and Peptide Synthesis, Oxford Science Publications, Oxford; Austen, B. M. and Westwood, O. M. R. (1991) Protein Targeting and Secretion, IRL Press, Oxford.
- the conformationally dynamic peptides described herein are useful, for example, for detecting target proteins having a specific conformation, including misfolded proteins or proteins having a ⁇ -sheet secondary structure which may be associated with disease.
- the peptides are useful as probes for a target protein capable of exhibiting or exhibiting a ⁇ -sheet conformation associated with an amyloidogenic disease.
- the peptides also may be useful in diagnostic and therapeutic approaches, and in methods of screening drug candidates.
- the peptides are referred to herein as “probes” without detracting from their utility in other contexts.
- the peptide probe comprises an amino acid sequence that is a variant of a reference sequence, where the reference sequence consists of an amino acid sequence of the target protein that undergoes a conformational shift, such as a shift from an ⁇ -helix/random coil conformation to a ⁇ -sheet conformation.
- a conformational shift such as a shift from an ⁇ -helix/random coil conformation to a ⁇ -sheet conformation.
- a ⁇ -sheet forming region of the target protein.
- amino acids 16-35 of the A ⁇ protein are known to comprises a ⁇ -sheet forming region.
- the reference sequence may comprise amino acids 16-35, or 17-35, of the A ⁇ protein.
- the amino acid sequence of the peptide may be designed, therefore, from the target protein sequence, based on existing sequence and conformation information or, alternatively, may be readily determined experimentally.
- the reference sequence consists of an amino acid sequence of a ⁇ -sheet forming region of a naturally occurring mutant of the target protein, such as a mutant known to exhibit an increased tendency to adopt a ⁇ -sheet conformation and/or to form aggregates. Examples of A ⁇ mutants are described in Murakami, supra, and include the substitutions A21G, E22G, E22Q, E22K, and D23N.
- the reference sequence may comprise a minimum number of contiguous amino acids of the target protein, such as at least about 5, at least about 6, at least about 7, at least about 8, at least about 9, at least about 10, at least about 11, at least about 12, at least about 13, at least about 14, at least about 15, at least about 16, at least about 17, at least about 18, at least about 19, at least about 20, at least about 21, at least about 22, at least about 23, at least about 24, at least about 25, at least about 30, at least about 35, at least about 40, at least about 45, or at least about 50 contiguous amino acids of the target protein sequence, or any range between these numbers, such as about 10 to about 25 contiguous amino acids of the target protein sequence.
- the peptide probes themselves comprise at least about 5 amino acids, and may include up to about 300 to about 400 amino acids, or more, or any size in between, such as about 10 amino acids to about 50 amino acids in length.
- the peptides consist of about 5 to about 100, about 10 to about 50, about 10 to about 25, about 15 to about 25, or about 20 to about 25 amino acids.
- the peptides comprise from about 17 to about 34 amino acids, including about 20 amino acids, about 21 amino acids, about 22 amino acids, about 23 amino acids, about 24 amino acids, or about 25 amino acids.
- Peptides of different lengths may exhibit different degrees of interaction and binding to target protein, and suitable lengths can be selected by the skilled artisan guided by the teachings herein.
- the peptides undergo a structural change similar to that of the target protein.
- the peptides are capable of adopting both a random coil/alpha-helix conformation and a ⁇ -sheet conformation, and adopt a ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation.
- the peptide probe is provided in a ⁇ -sheet conformation, and undergoes a conformational change to a less ordered or decreased ⁇ -sheet conformation/increased alpha-helix conformation upon contact, binding and/or interaction with target protein in a ⁇ -sheet conformation.
- the peptides may be provided in a solution, such as an aqueous solution with a pH of between about 4 and about 10, such as between about 5 and about 8, with an ionic strength of between about 0.05 and about 0.5 (when typically prepared with a chloride salt, such as sodium chloride or potassium chloride).
- the solution may also comprise a water-miscible organic material, such as trifluoroethanol, in amounts between about 30% to about 70% by volume, such as between about 45% to about 60%.
- the solvent may be prepared with a suitable buffering system such as acetate/acetic acid, Tris, or phosphate.
- the peptides probes disclosed herein may be used to detect target protein in vitro or in vivo.
- the peptide probes also are useful for identifying therapeutic agents, such as in accordance with the methods described in US 2008/0095706 (corresponding to U.S. patent application Ser. No. 11/828,953), the entire contents of which are incorporated herein by reference in their entireties.
- the peptide probe comprises an amino acid sequence that is a variant of a reference sequence that comprises one or more amino acid additions, substitutions or deletions relative to the reference sequence.
- the peptide consists of the variant sequence.
- the reference sequence consists of an amino acid sequence of a ⁇ -sheet forming region of the target protein.
- the variant sequence is designed to improve the performance of the peptide in assays for detecting target protein.
- the variant is designed such that the random coil/alpha-helix conformation of the variant sequence is more stable in an oxidizing environment than a probe consisting of the reference amino acid sequence.
- the variant sequence is designed such that the distance between the N-terminus and the C-terminus of the variant sequence in a random coil/alpha-helix conformation differs from (e.g., is greater than) the distance between the N-terminus and the C-terminus of the variant sequence in a ⁇ -sheet conformation. Additionally or alternatively, the variant sequence is designed such that the variant sequence adopts a ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation more efficiently than the reference sequence.
- the variant sequence is designed such that the variant sequence adopts a less ordered or decreased ⁇ -sheet conformation upon binding to target protein exhibiting a ⁇ -sheet conformation, and may have a ⁇ -sheet structure that is less thermodynamically strong than that of the reference sequence. Additionally or alternatively, the variant sequence may be designed such that the variant sequence has increased stability and/or decreased reactivity, increased hydrophilicity and/or solubility, and/or an additional A ⁇ binding motif. Additionally or alternatively, the variant sequence may comprise one or more amino acid deletions relative to the reference sequence, such that the variant sequence has an enhanced ability to form aggregates.
- the variant sequence is designed to increase the signal difference between any signal associated with peptide that is not bound to target protein and a signal associated with peptide that is bound to target protein, such as by increasing the signal difference between any signal associated with the random/alpha-helix conformation of the peptide (e.g., background signal) and a signal associated with the ⁇ -sheet conformation of the peptide. This may be effected by, for example, reducing any background signal associated with the random/alpha-helix conformation of the peptide and/or increasing a signal associated with the ⁇ -sheet conformation of the peptide.
- the peptide probe may be labeled at or near each of its N- and C-termini, such that a signal is generated by interaction between the label moieties that occurs when the moieties are in physical proximity to each other, such as when the peptide exhibits a ⁇ -sheet conformation that brings the N- and C-termini into physical proximity.
- a signal would be associated with the ⁇ -sheet conformation of the peptide.
- the peptide may be labeled at any one or more sites that is/are in physical proximity when the peptide is in a ⁇ -sheet conformation and distant when the peptide is in a random coil/ ⁇ -helix configuration, such that the labels interact to emit a signal when the peptide is in the ⁇ -sheet conformation.
- a signal associated with the ⁇ -sheet conformation may be different from any signal associated with the random coil/alpha-helix conformation, such as by having a greater magnitude and/or being at a different frequency or wavelength.
- background signal maybe observed, for example, if the random coil/alpha-helix conformation permits the labels to come into sufficient physical proximity to generate a signal and/or if the peptide probe adopts a ⁇ -sheet conformation that is not associated with contact, binding to or interaction with target protein, such as may occur in solution. Background signal associated with the random coil/alpha-helix conformation of the peptide could be reduced, for example, by stabilizing the random coil/alpha-helix conformation to minimize the formation of ⁇ -sheet conformation that is not associated with contact, binding to or interaction with target protein.
- the peptide probe may be designed such that the random coil/alpha-helix conformation of unbound peptide probe exhibits increased stability.
- substitutions with alpha-helix forming residues such as alanine
- salt bridge forming residues such as histidine and glutamic acid
- the variant sequence of the peptide comprises amino acid substitutions, additions and/or deletions that increase the stability of the random coil/alpha-helix conformation.
- the signal associated with the ⁇ -sheet conformation of the peptide could be increased, for example, by decreasing the distance between the N- and C-termini (or between the sites of the labels) when the peptide is in a ⁇ -sheet conformation. Distances between the termini of the peptide (or between the label sites) in the random coil/alpha-helix conformation versus in the ⁇ -sheet conformation can be modeled in silico using standard protein modeling methods.
- the variant sequence comprises the addition of, or substitution with, one or more amino acid residues that have a propensity for forming alpha helices, such as alanine (A).
- amino acid residues may be introduced into an internal site of the reference sequence, or at either or both termini of the reference sequence.
- the reference sequence includes one, two, three, four, five, six, seven, eight, nine, ten, or more of such amino acid residues, as additional residues or in place of residues of the target protein (substitutions).
- the peptide probe comprises the variant sequence of SEQ ID NO:3 (Peptide 38) or SEQ ID NO:4 (Peptide 45).
- the peptide probe consists of SEQ ID NO:3 or SEQ ID NO:4.
- the peptide probe comprises the variant sequence of SEQ ID NO:2 (Peptide 22), or consists of SEQ ID NO:2.
- any of the other variants described herein may be further modified to include alanine residues or complementary charged residues to enhance alpha helix formation.
- the variant sequence comprises one or more amino acid substitutions or additions that introduce amino acids capable of forming salt bridges or that introduce an amino acid capable of forming a salt bridge with an amino acid already present in the reference sequence.
- Salt bridges are weak ionic interactions between negatively and positively charged amino acids.
- the amino acid substitutions or additions introduce one or more positive amino acid residues, such as arginine or lysine, in a position capable of forming a salt bridge with another amino acid in the sequence.
- the amino acid substitutions or additions introduce one or more negative amino acid residues, such as aspartic acid or glutamic acid, in a position capable of forming a salt bridge with another amino acid in the sequence.
- the amino acid substitutions or additions introduce both one or more positive and one or more negative amino acid residues in positions capable of forming one or more salt bridge with each other or with other amino acids in the sequence.
- a salt bridge comprises one or more ionizable residues such as histidine, tyrosine or serine.
- the variant sequence comprises amino acid substitutions or additions that introduce one or more histidine residues and/or arginine residues and/or lysine residues and/or glutamic acid and/or aspartic acid residues and/or tyrosine residues and/or serine residues in positions capable of forming one or more salt bridges.
- the peptide probe comprises the variant sequence of one of SEQ ID NOs:2-4 (Peptide 22, Peptide 38, or Peptide 45). In specific embodiments, the peptide probe consists of one of SEQ ID NOs:2-4. In other specific embodiments, the peptide comprises the variant sequence of one of SEQ ID NOs: 14-17 (Peptide 22 variation 1; Peptide 22 variation 2, Peptide 59, Peptide 77). In specific embodiments, the peptide consists of one of SEQ ID NOs: 14-17. In other embodiments, any of the other variants described herein may be further modified to include a salt bridge.
- the salt bridges can be designed to stabilize the alpha-helix conformation of the peptide. Additionally or alternatively, the presence of a salt bridge provides a mechanism for controlling the signal generated in an assay using the peptide.
- the salt and/or pH of the assay buffer can be selected or adjusted to strengthen or weaken the salt bridge and thus control the stability of the alpha-helix conformation and the formation of 0-sheet conformation.
- the variant sequence comprises one or more amino acid additions, deletions and/or substitutions that facilitate the adoption of the ⁇ -sheet conformation upon contact, binding or interaction with target protein (or under other conditions conducive to (3-sheet formation), such that the variant sequence (or peptide comprising it) adopts the ⁇ -sheet conformation more efficiently than the reference sequence upon contact, binding or interaction with target protein (or under other conditions conducive to ⁇ -sheet formation).
- Such peptide probes may exhibit increased sensitivity for detecting target protein having a ⁇ -sheet conformation than the reference sequence.
- the variant sequence comprises one or more amino acid substitutions found in a ⁇ -sheet forming region of a naturally occurring mutant, such as a mutant that exhibits an increase tendency to adopt a ⁇ -sheet conformation and/or form aggregates.
- variants comprising one or more of the substitution 132S or E22P are useful in this context, such as SEQ ID NO:5 or 7.
- Other examples include variants comprising the substitution E22Q (“Dutch”) or E22K (“Italian”), such as SEQ ID NO:11 or 12.
- the variant substitution comprises one or more of the substitutions F19S and L34P, such as SEQ ID NO:8.
- variants can be derived from mutants known in the art, such as those disclosed in Murakami et al., J. Biol. Chem. 46:46179-46187, 2003.
- variants may comprise one or more of the substitutions A21G, E22G (“Arctic”), and D23N. Examples of such variants include SEQ ID NOs:9, 10 or 13.
- any variants described herein may further comprise one or more point mutations based on these or other known mutations.
- variants based on the Peptide 22 variants may further comprise one or more point mutations, such as E22K, E22Q, or E22G. Examples of such variants include SEQ ID NOs: 19-21.
- the peptide probe comprises the variant sequence of any one of SEQ ID NOs: 5, 7-13 or 18-21.
- the peptide probide consists of any one of SEQ ID NOs: 5, 7-13, or 18-21.
- the peptide probes have a variant sequence that comprises one or more amino acid additions, substitutions or deletions relative to the reference sequence, such that the variant sequence adopts a less ordered or decreased ⁇ -sheet conformation and/or increased alpha-helix conformation upon binding to target protein exhibiting a ( ⁇ -sheet conformation.
- variants include SEQ ID NO:2 (Peptide 22), SEQ ID NO:3 (Peptide 38), SEQ ID NO:4 (Peptide 45), SEQ ID NO:14 (Peptide 22 var. 1), and SEQ ID NO:15 (Peptide 22 var. 2).
- the peptide probe comprises the variant sequence of any one of SEQ ID NOs:2-4 or 14-15. In specific embodiments, the peptide probe consists of any one of SEQ ID NOs:2-4 or 14-15.
- the variant sequence comprises one or more further amino acid additions, substitutions or deletions relative to the reference sequence, such that the ⁇ -sheet structure of the variant sequence is less thermodynamically stable or strong than that of a probe consisting of the reference sequence.
- the variant sequence of SEQ ID NO:2 may comprise one or more further substitutions such as F19S, S26D, H29D, 131D, L34D, and L34P, relative to the numbering wildtype sequence.
- Peptides AD323 SEQ ID NO:28
- AD325 SEQ ID NO:29
- AD330 SEQ ID NO:30
- AD329 SEQ ID NO:31
- AD328 SEQ ID NO:32
- AD327 SEQ ID NO:33
- GM6 SEQ ID NO:34
- GM6 variation 1 SEQ ID NO:35
- Peptide 132S SEQ ID NO:5
- the peptide probe may comprise the variant sequence of any one of SEQ ID NOs:5 or 28-35, or may consists of any one of SEQ ID NOs:5 or 28-35.
- the variant sequence comprises one or more amino acid additions, deletions and/or substitutions that render the variant (or peptide comprising it) more stable in an oxidizing environment than the reference sequence.
- one or more methionine residues such as a C-terminal methionine residue, are replaced with a residue more resistant to oxidation, such as an alanine residue.
- the peptide comprises the variant sequence of SEQ ID NO:6 (Peptide AD250).
- the peptide consists of SEQ ID NO:6.
- any of the other variants described herein may be further modified by the replacement of a methionine residue, such as a C-terminal methionine residue, with a residue more resistant to oxidation, such as an alanine residue.
- a methionine residue such as a C-terminal methionine residue
- the variant sequence comprises one or more amino acid additions, deletions and/or substitutions that render the variant (or peptide comprising it) more hydrophilic and/or more soluble in aqueous environments.
- variants comprising one or more charged residues such as glutamic acid and/or d-Arginine
- a variant sequence may comprise one, two, three or more N-terminal, C-terminal, or internal glutamic acid and/or d-Arginine residues.
- the peptide probe may comprise the variant sequence of AD272 (SEQ ID NO:22), AD316 (SEQ ID NO:23), AD305 (SEQ ID NO:24), and AD271 (SEQ ID NO:26), or may consist of these sequences.
- any of the other variants described herein may be further modified by the addition of one, two, three or more glutamic acid and/or d-Arginine residues at or near the N-terminus or C-terminus.
- the peptide probe may be conjugated to a hydrophilic moiety, such as a water-soluble polyethylene glycol (PEG), such as PEG with a molecular weight of about 1, 5, 6, 10, 12, 15, 20, 25, 30 or 35 kDa, including PEG with a molecular weight of about 10 kDa (“PEG10”).
- PEG polyethylene glycol
- An example of such a peptide probe comprising a wildtype ⁇ -sheet forming sequence (SEQ ID NO:1) is depicted in Table 1 in the examples below (AD274). Any variant or peptide probe described herein can be conjugated to a hydrophilic moiety.
- the variant sequence comprises one or more amino acid additions, deletions and/or substitutions that provide an additional A ⁇ binding motif, such as a motif comprising the amino acid residues GxxEG (SEQ ID NO:25), where “X” represents any amino acid residue.
- additional A ⁇ binding motif such as a motif comprising the amino acid residues GxxEG (SEQ ID NO:25), where “X” represents any amino acid residue.
- variant sequences include P59 (SEQ ID NO:17) and P77 (SEQ ID NO:16).
- the peptide probe may comprise the variant sequence of any one of SEQ ID NOs: 16 or 17, or may consist of any one of SEQ ID NOs:16 or 17.
- any of the other variants described herein may be further modified to include a GxxEG motif.
- the peptides described herein may comprise one or more of any combination of the above-described additions, substitutions and deletions.
- the peptide in addition to the above-described amino acid additions and substitutions, may comprise the addition or substitution of one or more amino acid residues to facilitate labeling.
- the peptide comprises one or more lysine residues to facilitate labeling, such as labeling with a pyrene moiety.
- the peptide comprises a lysine residues at or near its C-terminus, N-terminus, or both.
- the peptide may comprises a lysine residues at its C-terminus, N-terminus, or both.
- the lysine residues are at other sites in the peptide as may be suitable for labeling, as discussed above.
- the reference sequence comprises amino acid 16 (lysine) of the A ⁇ protein
- that lysine residue can be used for labeling.
- the peptide probes are labeled through a side chain on a C-terminal lysine.
- the peptide probes have a C-terminal amide group in place of the C-terminal carboxyl group.
- the variant sequence comprises one, two, three, four, five, six, seven, eight, nine or ten amino acid additions, substitutions or deletions relative to the reference sequence. In other embodiments, the variant sequence consists of about ten to about twenty five amino acids in length, and the variant sequence comprises one, two, three, four, five, six, seven, eight, nine or ten amino acid additions, substitutions or deletions relative to the reference sequence.
- the variant sequence has about 99%, about 98%, about 97%, about 96%, about 95%, about 90%, about 85%, about 80%, about 75%, about 70%, about 66%, about 65%, about 60%, about 55%, about 50%, about 45%, about 40%, about 35%, about 30%, about 25%, about 20%, about 15%, or about 10% identity to the reference sequence. In some embodiments, the variant sequence has about 66% to about 97% identity to the reference sequence.
- any given peptide can be assessed by the methods described and illustrated below in the examples.
- the ability of a peptide to adopt a ⁇ -sheet conformation can be assessed as illustrated in Examples 1 and 5.
- the ability of a peptide to bind to target protein and emit a signal can be confirmed as illustrated in Examples 3-5.
- the probes disclosed herein may comprise one or more detectable labels.
- the probe may be coupled or fused, either covalently or non-covalently, to a label.
- the labels are selected to permit detection of a specific conformation of the probe, such as the conformation adopted when the probe associates with target protein.
- the label may emit a first signal (or no signal) when the probe is in a first, unassociated conformation (such as a primarily random coil/alpha-helix conformation or less organized or less dense form) and a second signal, or no signal (i.e., the probe is quenched) when the probe undergoes a conformational shift upon association with target protein (such as a primarily ⁇ -sheet conformation or more organized or more dense form).
- a first signal or no signal
- target protein such as a primarily ⁇ -sheet conformation or more organized or more dense form
- first signal and second signal may differ in one or more attributes, such as intensity, wavelength, etc.
- the first signal and second signal may differ in excitation wavelength and/or emission wavelength.
- the signal generated when the probe undergoes a conformation shift may result from interactions between labels bound to the same probe and/or may result from interactions between labels bound to different probes.
- the labels and label sites are selected such that the labels do or do not interact based on the conformation of the probe, for example, such that the labels do not interact when the probe is in its unassociated conformation and do interact when the probe undergoes a conformation shift upon association with target protein, to generate a detectable signal (including quenching), or vice versa.
- This may be accomplished by selecting label sites that are further apart or closer together depending on the associated state of the probe, e.g., depending on whether the probe has undergone a conformation shift upon association with target protein.
- the magnitude of the signal associated with the associated probe is directly correlated to the amount of target protein detected.
- the methods of the present invention permit detection and quantification of target protein.
- fluorescent labels including excimer, FRET or fluorophore/quencher label pairs, may be used to permit detection of a specific conformation of the probe, such as the conformation adopted when the probe associates with target protein, such as misfolded A ⁇ protein.
- the probe is labeled at separate sites with a first label and a second label, each being complementary members of an excimer, FRET or fluorophore/quencher pair.
- excimer-forming labels may emit their monomeric signals when the probe is in its unassociated state, and may emit their excimer signal when the probe undergoes a conformation shift that brings the labels in closer physical proximity, upon association with the target protein. This is illustrated schematically in FIG. 10 , top panel.
- FRET labels may emit their FRET signal when the probe undergoes a conformation shift that brings the labels in closer physical proximity. This is illustrated schematically in FIG. 10 , bottom panel B.
- fluorophore/quencher label pairs may emit the fluorophore signal when the probe is in its unassociated state, and that signal may be quenched when the probe undergoes a conformation shift that brings the labels in closer physical proximity.
- the labels may be sited such that the opposite change in signal occurs when the probe undergoes a conformation shift upon association with the target protein.
- excimer-forming labels may emit their excimer signals when the probe is in its unassociated state, and may emit their monomer signal when the probe undergoes a conformation shift that reduces the labels' physical proximity, upon association with the target protein. This is illustrated schematically in FIG. 10 , bottom panel A.
- FRET labels may emit their FRET signal when the probe is in its unassociated state, and a different signal or no signal when the probe undergoes a conformation shift that reduces the labels' physical proximity.
- fluorophore/quencher label pairs may be quenched when the probe is in its unassociated state (where the labels are in close physical proximity) and may emit the fluorophore signal when the probe is in its unassociated state, that reduces the labels' physical proximity.
- the labels may be sited such that the opposite change in signal occurs when the probe undergoes a conformation shift upon association with the target protein.
- the probe is endcapped (at one or both ends of the peptide) with a detectable label.
- the probe comprises a detectable label at or near its C-terminus, N-terminus, or both.
- the probe may comprise a detectable label at its C-terminus, N-terminus, or both, or at other sites anywhere that generate a signal when the probe undergoes a conformation shift upon association with A ⁇ protein aggregate associated with a target protein.
- the label sites may be selected from (i) the N-terminus and the C-terminus; (ii) the N-terminus and a separate site other than the C-terminus; (iii) the C-terminus and a separate site other than the N-terminus; and (iv) two sites other than the N-terminus and the C-terminus.
- Label sites other than the N-terminus or C-terminus may be any site within the peptide probe, including one, two, three, four, five, or more residues removed from a terminal residue.
- Peptide probes AD272 (SEQ ID NO:22), AD316 (SEQ ID NO:23), AD305 (SEQ ID NO:24), AD271 (SEQ ID NO:26), and AD273 (SEQ ID NO:27) in Table 1 below are examples of peptide probes where one of the labels is near, but not at, a terminus. In these probes, the label sites are two or three residues from the N-terminus or C-terminus.
- the N-terminal label is provided on the amine group of the N-terminal amino acid residue. In other embodiments, the N-terminal label is provided on a side chain of an amino acid residue at or near the N-terminus, such as on a side chain of a lysine (K) residue at or near the N-terminus.
- the label site can be selected to alter the fluorescence properties of the peptide probe, and improve or optimize the signal to noise ratio.
- Peptide probes AD266 (SEQ ID NO:36) and AD268 (SEQ ID NO:37) depicted in Table 1 below are examples of peptide probes with the N-terminal label provided on a side chain of the first N-terminal lysine residue.
- the N-terminal label is provided on the N-terminal amine, and the C-terminal label is provided on a side chain of a C-terminal lysine residue. In other embodiments, the N-terminal label is provided on a side chain of an N-terminal lysine residue, and the C-terminal label is provided on a side chain of a C-terminal lysine residue.
- pyrene moieties are present at or near each terminus of the probe and the ratio of the pyrene monomer signal to the pyrene excimer signal is dependent upon the conformation of the probe.
- the monomer signal may predominate when the probe is in its unassociated state, and the excimer signal may predominate when the probe undergoes a conformation shift upon association with target protein (or the excimer signal may increase without necessarily becoming predominant), or vice versa.
- the ratio of the pyrene monomer signal to the pyrene excimer signal may be measured.
- Pyrene moieties present at other sites on the probe also may be useful in this context, as long as excimer formation is conformation dependent based on the associated or unassociated state of the peptide probe.
- Table 1 includes a number of peptide probes labeled with pyrene (“(PBA)”) at or near each of the N-terminus and C-terminus.
- the formation of excimers may be detected by a change in optical properties. Such changes may be measured by known fluorimetric techniques, including UV, IR, CD, NMR, or fluorescence, among numerous others, depending upon the fluorophore label. The magnitude of these changes in optical properties is directly related to the amount of probe that has adopted the conformation associated with the signal, and so is directly related to the amount of target protein or structure present.
- Table 1 includes a number of peptide probes labeled with FRET or fluorophore/quencher pair labels at or near each of the N-terminus and C-terminus.
- a peptide probe can be labeled at one terminus with pyrene and at the other terminus with a quencher such as the Dabcyl fluorescence quencher (4-(4-dimethylaminophenyl)diazenylbenzoic acid), as illustrated by AD326 (SEQ ID NO:43).
- a peptide probe can be labeled at one terminus with the fluorophore EDANS (5-(2′-aminoethyl)aminonaphthalene-1-sulfonic acid) and at the other terminus with a quencher such as Dabcyl, as illustrated by AD309 (SEQ ID NO:44), AD306 (SEQ ID NO:45), AD303 (SEQ ID NO:46), AD302 (SEQ ID NO 47), AD301 (SEQ ID NO:48), and AD300 (SEQ ID NO:49).
- the fluorophore EDANS 5-(2′-aminoethyl)aminonaphthalene-1-sulfonic acid
- a quencher such as Dabcyl
- a peptide probe can be labeled at one terminus with a Dansyl label (5-dimethylaminonaphthalene-1-sulfonyl) and at the other terminus with a tryptophan residue (Trp, W), to provide FRET pair labeling, as illustrated by AD295 (SEQ ID NO:50).
- a peptide probe can be labeled at one terminus with 5(6) carboxyfluorescein (FAM) and at the other terminus with EDANS as illustrated by AD294 (SEQ ID NO:51), AD293 (SEQ ID NO:52), AD292 (SEQ ID NO:53), AD291 (SEQ ID NO:54), and AD290 (SEQ ID NO:55).
- illustrative peptide probes comprise wildtype and variant sequences described elsewhere herein, and demonstrate that any peptide probe described herein can be labeled with any label pair at a variety of label sites.
- a label is conjugated to a lysine residue, including an N-terminal, C-terminal or internl lysine residue.
- a label is conjugated to a glutamic acid residue, including an N-terminal, C-terminal or internl glutamic acid residue.
- one label is conjugated to a lysine residue and another label is conjugated to a glutamic acid residue.
- Other combinations and permutations of label sites will be readily recognized by the skilled artisan, and are included in the invention.
- labels could be used.
- one or more labels could be present at each labeling site, or multiple labels could be present, each at different labeling sites on the probe.
- the labels may generate independent signals, or may be related as excimer pairs, FRET pairs, signal/quencher, etc.
- one site might comprise one, two, three, four or more pyrene moieties and another site might comprise a corresponding quencher.
- the probes disclosed herein may comprise a detectable label.
- the probe may comprise a peptide probe that is coupled or fused, either covalently or non-covalently, to a label.
- the peptide probe is endcapped (at one or both ends of the peptide) with a detectable label.
- the peptide comprises a detectable label at or near its C-terminus, N-terminus, or both.
- the peptide may comprises a detectable label at its C-terminus, N-terminus, or both, or at other positions anywhere that generate a signal when the peptide adopts a ⁇ -sheet conformation, or other conformation associated with its associated state.
- both the C-terminus and the N-terminus are endcapped with small hydrophobic peptides ranging in size from about 1 to about 5 amino acids.
- These peptides may be natural or synthetic, but are preferably natural (i.e., derived from the target protein).
- the signal generated when the peptide adopts a ⁇ -sheet conformation may result from interactions between labels bound to the same peptide (intra-peptide) and/or may result from interactions between labels bound to different peptides (inter-peptide).
- peptides in the ⁇ -sheet conformation may self-associate such that labels bound to different peptide molecules are in sufficient physical proximity to generate an inter-peptide signal.
- the labels are used to detect a specific conformation of the peptide, such as the ⁇ -sheet conformation or other target-protein-associated conformation.
- the label may emit a first signal (or no signal) when the peptide is in a first conformation (such as a random coil/alpha-helix conformation) and a second signal when the peptide is in a second conformation (such as a ⁇ -sheet conformation).
- first signal and second signal may differ in one or more of intensity, wavelength, etc.
- the first signal and second signal may differ in excitation wavelength and/or emission wavelength.
- Exemplary labels include fluorescent agents (e.g., fluorophores, fluorescent proteins, fluorescent semiconductor nanocrystals), phosphorescent agents, chemiluminescent agents, chromogenic agents, quenching agents, dyes, radionuclides, metal ions, metal sols, ligands (e.g., biotin, streptavidin haptens, and the like), enzymes (e.g., beta-galactosidase, horseradish peroxidase, glucose oxidase, alkaline phosphatase, and the like), enzyme substrates, enzyme cofactors (e.g., NADPH), enzyme inhibitors, scintillation agents, inhibitors, magnetic particles, oligonucleotides, and other moieties known in the art.
- fluorescent agents e.g., fluorophores, fluorescent proteins, fluorescent semiconductor nanocrystals
- phosphorescent agents e.g., phosphorescent agents, chemiluminescent agents, chromogenic
- the label is a fluorophore
- one or more characteristics of the fluorophore may be used to assess the structural state of the labeled probe.
- the excitation wavelength of the fluorophore may differ based on the structural state of the labeled probe.
- the emission wavelength, intensity, or polarization of fluorescence may vary based on the structural state of the labeled probe.
- a “fluorophore” is a chemical group that may be excited by light to emit fluorescence or phosphorescence.
- a “quencher” is an agent that is capable of quenching a fluorescent signal from a fluorescent donor.
- a first fluorophore may emit a fluorescent signal that excites a second fluorophore.
- a first fluorophore may emit a signal that is quenched by a second fluorophore.
- the probes disclosed herein may undergo fluorescence resonance energy transfer (FRET).
- Fluorophores and quenchers may include the following agent (or fluorophores and quenchers sold under the following tradenames): 1,5 IAEDANS; 1,8-ANS; umbelliferone (e.g., 4-Methylumbelliferone); acradimum esters, 5-carboxy-2,7-dichlorofluorescein; 5-Carboxyfluorescein (5-FAM); 5-Carboxytetramethylrhodamine (5-TAMRA); 5-FAM (5-Carboxyfluorescein); 5-HAT (Hydroxy Tryptamine); 5-Hydroxy Tryptamine (HAT); 5-ROX (carboxy-X-rhodamine); 5-TAMRA (5-Carboxytetramethylrhodamine); 6-Carboxyrhodamine 6G; 6-CR 6G; 6-JOE; 7-Amino-4-methylcoumarin; 7-Aminoactinomycin D (7-AAD); 7-Hydroxy-4-
- the label is a pyrene moiety.
- a pyrene moiety includes pyrene, which comprises four fused benzene rings or a derivative of pyrene.
- pyrene derivative is meant a molecule comprising the four fused benzene rings of pyrene, wherein one or more of the pyrene carbon atoms is substituted or conjugated to a further moiety.
- Exemplary pyrene derivatives include alkylated pyrenes, wherein one or more of the pyrene carbon atoms is substituted with a linear or branched, substituted or unsubstituted, alkyl, alkenyl, alkynyl or acyl group, such as a C 1 -C 20 , linear or branched, substituted or unsubstituted alkyl, alkenyl, alkynyl or acyl group, where the group may be substituted with, for example, a moiety including an O, N or S atom (e.g., carbonyl, amine, sulfhydryl) or with a halogen.
- a moiety including an O, N or S atom e.g., carbonyl, amine, sulfhydryl
- the pyrene derivative includes one or more free carboxyl groups and/or one or more free amine groups, each of which may be directly attached to a pyrene carbon atom or attached to any position on a linear or branched, substituted or unsubstituted, alkyl, alkenyl, alkynyl or acyl group as described above, such as being attached at a carbon atom that is separated from a pyrene carbon by 1 or more, such as 1 to 3, 1 to 5, or more, atoms.
- the pyrene is substituted with one or more acetic acid moieties and/or one or more ethylamine moieties.
- the pyrene derivative is substituted with a single methyl, ethyl, propyl or butyl group. In some embodiments, the pyrene is substituted with a short chain fatty acid, such as pyrene butyrate. In another embodiment, the pyrene is conjugated to albumin, transferring or an Fc fragment of an antibody. In some embodiments, the substituent is attached to pyrene through a carbon-carbon linkage, amino group, peptide bond, ether, thioether, disulfide, or an ester linkage. In other embodiments, the pyrene derivative is PEGylated pyrene, i.e, pyrene conjugated to polyethylene glycol (PEG). Such pyrene derivatives may exhibit a longer circulating half-life in vivo. In other embodiments, the pyrene derivative is pyrene conjugated to albumin.
- PEG polyethylene glycol
- the label comprises a fluorescent protein which is incorporated into a peptide probe as part of a fusion protein.
- Fluorescent proteins may include green fluorescent proteins (e.g., GFP, eGFP, AcGFP, TurboGFP, Emerald, Azami Green, and ZsGreen), blue fluorescent proteins (e.g., EBFP, Sapphire, and T-Sapphire), cyan fluorescent proteins (e.g., ECFP, mCFP, Cerulean, CyPet, AmCyan1, and Midoriishi Cyan), yellow fluorescent proteins (e.g., EYFP, Topaz, Venus, mCitrine, YPet, PhiYFP, ZsYellow1, and mBanana), and orange and red fluorescent proteins (e.g., Kusabira Orange, mOrange, dTomato, dTomato-Tandem, DsRed, DsRed2, DsRed-Express (T1), DsREd-Monomer,
- the probes may be comprised in fusion proteins that also include a fluorescent protein coupled at the N-terminus or C-terminus of the probe.
- the fluorescent protein may be coupled via a peptide linker as described in the art (U.S. Pat. No. 6,448,087; Wurth et al., J. Mol. Biol. 319:1279-1290 (2002); and Kim et al., J. Biol. Chem.
- suitable linkers may be about 8-12 amino acids in length. In further embodiments, greater than about 75% of the amino acid residues of the linker are selected from serine, glycine, and alanine residues.
- labels useful for in vivo imaging can be used.
- labels useful for magnetic resonance imaging such as fluorine-18 can be used, as can chemiluminescent labels.
- the probe is labeled with a radioactive label.
- the label may provide positron emission of a sufficient energy to be detected by machines currently employed for this purpose.
- One example of such an entity comprises oxygen-15 (an isotope of oxygen that decays by positron emission) or other radionuclide.
- Another example is carbon-11.
- Probes labeled with such labels can be administered to a patient, permitted to localize at target protein, and the patient can be imaged (scanned) to detect localized probe, and thus identify sites of localized target protein.
- Labeled probes can be administered by any suitable means that will permit localization at sites of target protein, such as by direct injection, intranasally or orally.
- radiolabeled probes can be injected into a patient and the binding of the probe to the protein target monitored externally.
- the label comprises an oligonucleotide.
- the peptide probes may be coupled to an oligonucleotide tag which may be detected by known methods in the art (e.g., amplification assays such as PCR, TMA, b-DNA, NASBA, and the like).
- the peptide probes described herein selectively associate with target protein and undergo a conformation shift upon association with target protein.
- the probes described herein bind to A ⁇ protein aggregates associated with a target protein and undergo a conformation shift upon such binding.
- the conformation shift may comprise a change in the distance between the N- and C-termini of the probe (or between any other two points), folding more or less compactly, adopting a more ordered or less ordered conformation, changing from predominantly one secondary structure to predominantly another secondary structure, or any change in the relative amounts of different secondary structures.
- “conformation shift” includes those shifts that can be detected by indirect means, such as through label signaling discussed below, even if more direct measures of conformation, such as CD, do not reveal a change in conformation.
- the probe undergoes a conformation change similar to that of the target protein.
- the probes are capable of adopting both a primarily random coil/alpha-helix conformation and a primarily ⁇ -sheet conformation, and adopt a primarily ⁇ -sheet conformation upon binding to target protein exhibiting a primarily ⁇ -sheet conformation.
- the probe is provided in a primarily ⁇ -helix/random coil conformation, and undergoes a conformation shift to a primarily ⁇ -sheet conformation upon contact, binding, association and/or interaction with target protein in a primarily ⁇ -sheet conformation.
- the probe shifts conformation by becoming more condensed, more diffuse, or adopting any different configuration. In some embodiments, the probe more closely adopts the conformation of the A ⁇ protein aggregates. In other embodiments, the probes are capable of adopting both a primarily random coil/alpha-helix conformation and a primarily ⁇ -sheet conformation, and adopt a less ordered or reduced ⁇ -sheet conformation upon binding to target protein exhibiting a primarily ⁇ -sheet conformation.
- the probe may be provided in a primarily ⁇ -sheet conformation, and will undergo a conformation shift to a less ordered or reduced ⁇ -sheet conformation/increased random coil/alpha-helix conformation upon contact, binding, association and/or interaction with target protein in a primarily ⁇ -sheet conformation.
- the peptide probe preferentially bind to target protein in a specific state of self-aggregation, such as monomers, dimers, soluble oligomers (e.g., 4-12mers), insoluble aggregates and fibrils (e.g., 100-1000mers or larger).
- a specific state of self-aggregation such as monomers, dimers, soluble oligomers (e.g., 4-12mers), insoluble aggregates and fibrils (e.g., 100-1000mers or larger).
- FIG. 12 illustrates the specificity of Peptide 22 (SEQ ID NO:2) for soluble A ⁇ oligomers.
- the first two panels show the dose-dependent increase in pyrene monomer signal when Peptide 22 is incubated with soluble A ⁇ oligomers prepared by two different methods.
- the next two panels show no change in fluorescence when Peptide 22 is incubated with A ⁇ 40 monomers and A ⁇ 42 monomers.
- the next panel shows no change in fluorescence when Peptide 22 is incubated with A ⁇ 40 fibers and the next panel shows some dose-dependent increase in monomer fluorescence when Peptide 22 is incubated with A ⁇ 42 fibers.
- the ability to detect soluble A ⁇ oligomers may have particular clinical significance because soluble oligomers are believed to be an active pathogenic form of A ⁇ protein. Moreover, the ability to detect soluble A ⁇ oligomers may permit detection, diagnosis and treatment earlier during the course of disease progression than is permitted by the detection of A ⁇ fibrils.
- a method for detecting target protein in a test sample, wherein the target protein exhibits a ⁇ -sheet conformation associated with an amyloidogenic disease comprising: (i) contacting the sample with the peptide probe to form a test mixture; and (ii) detecting any binding between the peptide probe and any target protein present.
- the method is effected in vitro.
- test sample is any sample to be tested and may be, inter alfa, from human or animal tissue, blood, cerebrospinal fluid, urine, feces, hair, saliva or any other portion of the patient.
- the test sample may be from any source that may contain biological material containing a target protein of interest, including pharmaceutical products, food products, clothing or other animal-derived material or environmental samples.
- the test sample may be prepared for use in the present methods in any manner compatible with the present methods, for example homogenization, cell disruption, dilution, clarification, etc. Care should be taken to not denature the proteins in the test sample so that the target protein retains its original conformation.
- the test sample may optionally be desegregated prior to the addition of the peptide probe using conventional techniques, such as sonication.
- the test sample is a living subject.
- the probe may be provided in a solution, such as an aqueous solution with a pH of between about 4 and about 10, such as between about 5 and about 8, with an ionic strength of between about 0.01 and about 0.5 (when typically prepared with a chloride salt, such as sodium chloride or potassium chloride).
- the solution may also comprise a water-miscible organic material (e.g., trifluoroethanol, hexafluoro-2-propanal (HFIP) or acetonitrile (ACN)) in amounts between about 30% to about 100% by volume, such as between about 45% to about 60%.
- the solvent may be prepared with a suitable buffering system such as acetate/acetic acid, Tris, or phosphate.
- the probe may be provided in any physiologically acceptable solution.
- the probe may be prepared as a trifluoracetic salt and resuspended in an organic solvent, such as 100% HFIP or 50% ACN.
- the method is effected in vivo and comprises administering the peptide probe to a subject and, for example, scanning the subject to detect labeled peptide probe localized at sites of ⁇ -sheet conformation target protein.
- a labeled peptide probe can be administered to a patient, such as by local injection, allowed to localize at any sites of target protein or higher order target protein structures present within the patient, and then the patient can be scanned to detect the sites of labeled probe localized at sites of target protein or higher order target protein structures.
- the probe can be labeled with any label suitable for in vivo imaging.
- the patient can be subject to a full body scan to identify any site of target protein.
- specific areas of the patient can be scanned to determine whether target protein is localized in the specific areas.
- Specific areas of interest may include vascular tissue, lymph tissue or brain (including the hippocampus or frontal lobes), or other organs such as the heart, kidney, liver or lungs.
- Exemplary suitable scanning or imaging techniques include positron emission tomography (PET), single photon emission computed tomography (SPECT), magnetic resonance imaging (MRI), radiography, tomography, fluoroscopy, nuclear medicine, optical imaging, encephalography and ultrasonography.
- PET positron emission tomography
- SPECT single photon emission computed tomography
- MRI magnetic resonance imaging
- radiography tomography, fluoroscopy, nuclear medicine, optical imaging, encephalography and ultrasonography.
- binding between the peptide probe and target protein results in the formation of insoluble complexes.
- the insoluble complexes can be detected using conventional techniques, such as by separating the insoluble complex from the reaction mixture using conventional techniques such as centrifugation to pellet the insoluble complex and/or filtration.
- the insoluble complex can then be further characterized by techniques to detect, for example, any peptide probe present in the insoluble complex.
- detection techniques may include, for example, detecting the label of the peptide probe, or other techniques such by characterizing the insoluble complex using such techniques as SDS-PAGE, which separates proteins based on molecular weight, or other conventional techniques known in the art. Detection of the detectable label on the peptide probe in the insoluble complex is correlated with the presence of peptide probe-target protein complex, which in turn is correlated with target protein in the test sample.
- soluble target protein aggregates such as soluble A ⁇ oligomers binding between the peptide probe and target protein results in the formation of soluble complexes.
- Detection of complexes including soluble complexes can be effected by several different methods. For example, the complexes can be separated from other constituents of the reaction mixture, such as unbound peptide probe and/or unbound target protein, and then the complexes can detected by detecting the detectable label on the peptide probe present in the complex. Separation can be accomplished using any method known in the art.
- the peptide probe-target protein complex is separated using size exclusion chromatography (SEC).
- SEC size exclusion chromatography
- SEC retains smaller molecules using pores or openings in the capture media (also termed stationary phase) such that the smaller molecules migrate more slowly through capture media while the larger molecules pass through more quickly. These pores or openings are of defined size and can be selected to differentiate between the peptide probe-target protein complex and unbound peptide probe and/or unbound target protein.
- peptide probe-target protein complex will elute before unbound peptide probe. Detection of the detectable label on the peptide probe in earlier fraction(s) is correlated with the presence of peptide probe-target protein complex, which in turn is correlated with target protein in the test sample.
- An alternative embodiment uses affinity chromatography to retain the peptide probe-target protein complex on the capture media.
- This approach utilizes a capture media, such as a solid phase, that comprises an affinity molecule that binds to the peptide probe-target protein complex.
- the affinity molecule can be selected to specifically bind the target protein, the peptide probe, the complex, or a label conjugated to any component of the peptide probe-target protein complex.
- the affinity molecule specifically binds the target protein or a label conjugated to the target protein such that the target protein is retained on the capture media.
- the bound material can be eluted, typically using an elution buffer, and the eluant can be analyzed. Detection of the detectable label on the peptide probe in the eluant is correlated with the presence of peptide probe-target protein complex in the eluant, which in turn is correlated with target protein in the test sample.
- the target protein is conjugated to a moiety to which the affinity molecule of the capture media binds. For example, if the affinity molecule comprises avidin or streptavidin, the target protein may be conjugated to biotin.
- the peptide probe is conjugated to a moiety specifically bound by the affinity molecule, such as biotin.
- the affinity molecule such as biotin.
- biotin a moiety specifically bound by the affinity molecule
- an avidin-coated plate can be used in conjunction with biotin-labeled peptide probes. After washing to remove non-specifically bound probe, a sample to be assayed for target protein is added. After washing to remove non-specifically bound substances, an antibody that specifically binds to the target protein is added (such as mouse anti-A ⁇ antibody, such as antibody 6E10 that recognizes A ⁇ protein, but not peptide probes).
- a labeled antibody is added (such as horseradish peroxidase labeled mouse anti-IgG antibody). In such assays, detection of the antibody label is correlated with the presence of target protein in the sample.
- Peptide probes AD310 (SEQ ID NO:38), AD313 (SEQ ID NO:39), AD314 (SEQ ID NO:40), AD317 (SEQ ID NO:41), and AD321 (SEQ ID NO:42) in Table 1 below illustrate specific embodiments of such peptide probes, with examples of alternative sites of biotinylation. While each of these peptide probes comprises SEQ ID NO:2 (Peptide 22), those skilled in the art will understand that any peptide probe described herein can be biotinylated as described in general above, and as illustrated specifically by these peptide probes.
- biotinylation can be achieved through a helical linker (such as EAAAK; SEQ ID NO:56) at the C-terminus, as illustrated by AD310 (SEQ ID NO:38).
- a helical linker includes residues that form alpha helixes, such as alanine residues.
- biotinylation can be achieved through a side chain on a lysine residue, including an internal or terminal lysine residue, as illustrated by AD313 (SEQ ID NO:39).
- biotinylation can be achieved through a flexible linker (such as GSSGSSK (SEQ ID NO:57)) at the C-terminus, as illustrated by AD314 (SEQ ID NO:40).
- a flexible linker includes one or more glycine and/or serine residues, or other residues that can freely rotate about their phi and psi angles.
- biotinylation can be achieved through a thrombin site linker (such as a linker comprising LVPRGS (SEQ ID NO:58), such as GLVPRGSGK (SEQ ID NO:59)) at the at the C-terminus, as illustrated by AD317 (SEQ ID NO:41).
- biotinylation can be achieved through a kinked linker (such as PSGSPK (SEQ ID NO:60)) at the at the C-terminus, as illustrated by AD321 (SEQ ID NO:42).
- kinked linkers comprise one or more proline residues, or other residues that have fixed phi and psi angles that rigidly project the biotin moiety away from the peptide probe's protein-binding motif.
- binding between the peptide probe and target protein is detected by detecting a signal generated by the peptide probe, such as a signal generated when the peptide probe exhibits a ⁇ -sheet conformation or other conformation associated with its target protein-associated state.
- a signal generated by the peptide probe such as a signal generated when the peptide probe exhibits a ⁇ -sheet conformation or other conformation associated with its target protein-associated state.
- the peptide probe may be labeled with an excimer-forming label, such as pyrene, or with FRET labels.
- a signal is generated when the peptide probe adopts a ⁇ -sheet conformation or other conformation associated with its target protein-associated state, such as may occur upon contact, interaction or binding with target protein exhibiting a ⁇ -sheet conformation.
- An excimer is an adduct that is not necessarily covalent and that is formed between a molecular entity that has been excited by a photon and an identical unexcited molecular entity.
- the adduct is transient in nature and exists until it fluoresces by emission of a photon.
- An excimer represents the interaction of two fluorophores that, upon excitation with light of a specific wavelength, emits light at a different wavelength, which is also different in magnitude from that emitted by either fluorophore acting alone. It is possible to recognize an excimer (or the formation of an excimer) by the production of a new fluorescent band at a wavelength that is longer than that of the usual emission spectrum.
- An excimer may be distinguished from fluorescence resonance energy transfer since the excitation spectrum is identical to that of the monomer. The formation of the excimer is dependent on the geometric alignment of the fluorophores and is heavily influenced by the distance between them.
- pyrene moieties are present at or near each terminus of the peptide probe and excimer formation between fluorophores is negligible as long as the overall peptide conformation is ⁇ -helix or random coil, but excimers are formed when the peptide agent undergoes a structural change (such as a conformational change to a ⁇ -sheet conformation) such that the pyrene moieties are brought into proximity with each other.
- Pyrene moieties present at other positions on the peptide also may be useful in this context, as long as excimer formation is conformation dependent. Further, the magnitude of excimer formation is directly related to the amount of protein analyte present.
- the methods of the present invention permit detection and in vivo imaging of a target protein or structure by detecting excimer formation.
- the excimer signal may be the signal associated with the unassociated state of the peptides, and pyrene monomer fluoresce will be lower.
- peptides When such peptides come into contact with target protein in a ⁇ -sheet conformation, they undergo a conformation change that decreases the physical proximity of the pyrene labels, resulting in a decreased pyrene excimer signal and an increased pyrene monomer signal, Pyrene moieties present at other positions on the peptide also may be useful in this context, as long as excimer/monomer signaling is dependent on a conformation that changes depending on whether the peptide probe is in an associated (e.g., bound) or unassociated (e.g., not bound to target protein) state. Further, in these embodiments, the increase of pyrene monomer signal, or the reduction in pyrene excimer signal, is directly related to the amount of target protein present.
- FIG. 11 illustrates raw fluorescence spectra for Peptide 22 (SEQ ID NO:2) labeled with pyrene at each terminus in the absence (left) and presence (right) of soluble A ⁇ oligomers.
- the flourescence of Peptide 22 is stable over time in the absence of oligomer (no increase in monomer or excimer flourescence), but exhibits an increase in pyrene monomer signal when incubated with soluble A ⁇ oligomers.
- the formation of excimers may be detected by a change in optical properties. Such changes may be measured by known fluorimetric techniques, including UV, IR, CD, NMR, or fluorescence, among numerous others, depending upon the fluorophore attached to the probe. The magnitude of these changes in optical properties is directly related to the amount of conjugate that has adopted the structural state associated with the change, and is directly related to the amount of target protein or structure present.
- the peptide probe can be labeled at or near each terminus with labels selected from the following FRET label pairs: DACIA-I/NBD, Marina Blue/NBD and EDANS/Fam (fluorescene).
- FRET label pairs selected from the following FRET label pairs: DACIA-I/NBD, Marina Blue/NBD and EDANS/Fam (fluorescene).
- detection of a FRET signal is associated with the ⁇ -sheet conformation of the peptide probe, and correlated with the presence of target protein.
- detection of a FRET signal is associated with the unassociated state of the probes, while detection of a different (monomer) signal or no signal is correlated with the presence of target protein.
- the peptide probes described herein are designed to achieve enhanced performance in detection assays, such as by exhibiting reduced background signal.
- the peptide probes may be more sensitive and more reliable than a reference peptide in detecting target protein exhibiting a ⁇ -sheet conformation.
- the target protein may be associated with a disease or condition.
- detection of the target protein may be correlated with a diagnosis of, or risk for, the disease or condition.
- the amount of target protein exhibiting a ⁇ -sheet conformation detected by the peptide probes described herein may be correlated with clinically relevant disease characteristics, such as disease progression or state, or predisposition to disease.
- the methods described herein may be used to determine the amount of misfolded amyloid protein present in a patient, and/or the ratio of A ⁇ 40 to A ⁇ 42 protein, which characteristics are known to correspond disease progression in amyloidogenic diseases, such as AD.
- the peptide probes described herein also are useful for identifying agents that inhibit the ability of the target protein to exhibit a ⁇ -sheet conformation, such as may be useful in a therapeutic context.
- the agent is incubated with target protein and binding of the peptide probe with target protein exhibiting a ⁇ -sheet conformation is detected.
- the inhibitory ability of the agent can be determined. Exemplary methods are described in US 2008/0095706 (corresponding to U.S. patent application Ser. No. 11/828,953), the entire contents of which are incorporated herein by reference in their entireties.
- in vivo methodology for preventing the formation of protein aggregates of a target protein comprising contacting the target protein in vivo with a peptide probe for the target protein, wherein the peptide probe preferentially binds to the target protein, thereby preventing the formation of higher order protein aggregates of the target protein.
- the peptide probe preferentially binds to the target protein in a specific state of self-aggregation selected from the group consisting of monomers, soluble oligomers, and insoluble self-aggregates.
- a peptide probe can be conjugated (directly or through a linker) to a therapeutic agent for targeting delivery of the therapeutic agent to sites of target protein.
- a peptide probe (alone or as a combination comprising another therapeutic agent) can be administered to a patient, such as by local injection, and allowed to localize at any sites of target protein or higher order target protein structures present within the patient, to effect therapy.
- vascular tissue including vascular tissue or lymph tissue or brain (including the hippocampus or frontal lobes), or other organs such as the heart, kidney, liver or lungs.
- lymph tissue including the hippocampus or frontal lobes
- organs such as the heart, kidney, liver or lungs.
- kits comprising the peptides described herein.
- the kits may be prepared for practicing the methods described herein.
- the kits include at least one component or a packaged combination of components useful for practicing a method.
- packaged combination it is meant that the kits provide a single package that contains a combination of one or more components, such as peptide probes, buffers, instructions for use, and the like.
- a kit containing a single container is included within the definition of “packaged combination.”
- the kits may include some or all of the components necessary to practice a method disclosed herein.
- the kits include at least one peptide probe in at least one container.
- the kits may include multiple peptide probes which may be the same or different, such as probes comprising different sequences and/or different labels, in one or more containers. Multiple probes may be present in a single container or in separate containers, each containing a single probe.
- Conjugation of fluorescent reporter moieties to peptides can provide a simple mechanism to monitor the conformational dynamics of a peptide under different solvent conditions, or in the presence of interaction partners (such as target proteins) and cofactors (such as anti-amyloid agents).
- interaction partners such as target proteins
- cofactors such as anti-amyloid agents
- the pyrene moieties may be separated by different distances depending on the conformation of the peptide, with the pyrenes in close physical proximity in the ⁇ -sheet conformation ( FIG. 1B ) and further apart in the random coil/alpha-helix conformation ( FIG. 1C ).
- pyrene when conjugated at or near the N- and C-termini of a peptide described herein it can provide a fluorescent signal with two distinct fluorescent profiles depending on the conformation of the peptide, with the monomeric signal being associated with a random/coil alpha-helix conformation of the peptide, and the excimeric signal being associated with a ⁇ -sheet conformation of the peptide.
- Results can be reported as the signal of the ⁇ -sheet conformation (excimer) or as the fluorescence ratio of signal from the ⁇ -sheet conformation (excimer) and the signal from the alpha-helical conformation (monomer).
- FIG. 1A illustrates the in silico predictions for the distribution of inter-pyrene distances of pyrenes conjugated to each terminus of a peptide corresponding to a region of the A ⁇ peptide (SEQ ID NO:1), depending on the solvent environment of the peptide, at room temperature.
- the peptide adopts a ⁇ -sheet confirmation in water, with the pyrene moieties in relatively close proximity (about 10 ⁇ between the centers of the N- and C-terminal pyrene rings).
- the peptide adopts an alpha-helix conformation in 40% trifluoroethanol (TFE), with the pyrene moieties further apart (about 20 ⁇ between the centers of the N- and C-terminal pyrene rings).
- Novel peptide probes were designed in accordance with the principles described herein. As illustrated in FIG. 2 , the peptide sequences are based on amino acids 17-35 of the A ⁇ peptide, which is a ⁇ -sheet forming region of the A ⁇ peptide.
- the reference sequence (WT; SEQ ID NO:1) corresponds to the wildtype sequence, with a terminal lysine residue added to facilitate pyrene labeling.
- Peptide 22 (SEQ ID NO:2) includes a substitution with a histidine residue, a substitution with a glutamic acid residue, and the addition of a C-terminal lysine residue.
- Peptide 38 (SEQ ID NO:3) includes a substitution with four consecutive alanine residues, a substitution with a histidine residue, a substitution with a glutamic acid residue, and the addition of a C-terminal lysine residue.
- Peptide 45 (SEQ ID NO:4) includes the addition of three consecutive N-terminal alanine residues, a substitution with a histidine residue, a substitution with a glutamic acid residue, and the addition of a C-terminal lysine residue.
- Peptide 132S (SEQ ID NO:5) includes the substitution of an isoleucine residue with a leucine residue and the addition of a C-terminal lysine residue.
- Peptide M35A (SEQ ID NO:6) includes the substitution of a C-terminal residue with an alanine residue, and the addition of a lysine residue as the C-terminal residue of the peptide.
- Peptide E22P (SEQ ID NO:7) includes the substitution of a glutamic acid residue with a proline residue.
- Peptide GM6 (SEQ ID NO:8) includes the substitution of a phenylalanine residue with a serine residue as well as a leucine residue with a proline residue.
- the histidine and glutamic acid residue substitutions in Peptides 22, 38 and 45 permit the formation of a salt bridge between those residues, which may stabilize the alpha-helix conformation and/or provide a means for controlling the signal generated by controlling assay conditions.
- these peptides exhibit reduced background signal because the peptide is less likely to adopt a ⁇ -sheet conformation in the absence of target protein in a a ⁇ -sheet conformation.
- the consecutive alanine substitutions (alanine repeats) in Peptide 38 (SEQ ID NO:3) and Peptide 45 (SEQ ID NO:4) have a high alpha-helical propensity, and thus stabilize the alpha-helix conformation of the peptide. Again, these peptides exhibit reduced background signal because the peptide is less likely to adopt a ⁇ -sheet conformation in the absence of target protein in a a ⁇ -sheet conformation.
- substitutions facilitate the adoption of the ⁇ -sheet conformation, or other conformation change, upon contact, binding or interaction with target protein, such that the peptide adopts the ⁇ -sheet conformation, or undergoes a conformation change, more efficiently than the reference sequence upon contact, binding or interaction with target protein.
- substitutions alanine to glycine, glutamic acid to proline glycine, glutamine, or lysine, and aspartic acid to asparagine in SEQ ID NOs:7, 9-13 and 19-21 result in peptide probes with enhanced ⁇ -sheet formation and aggregation properties.
- Peptide M35A (SEQ ID NO:6) renders the peptide more stable in an oxidizing environment than the reference (wildtype) sequence.
- Peptide probes can be used against a known target protein in several different assays to assess their suitability for use in a given assay and/or for use under given assay conditions. For example, one peptide may be more effective in one particular assay, while a different peptide may be more effected in a different assay.
- a peptide of SEQ ID NO:1 was used in several different assays, as described below. Similar assays can be used to detect target protein in a test sample.
- soluble peptide probes are combined with insoluble target protein fibers in an in vitro centrifugation-based interaction assay.
- Peptide probe that binds to the target protein will be detected in an insoluble pellet, which may be isolated using centrifugation.
- Peptide probe that does not bind to the insoluble target protein fibers remains in the supernatant and is not detected in the pellet.
- a ⁇ 42 Fiber (target protein) and peptide probe (SEQ ID NO:1) are incubated for 3 hours in the presence of increasing amounts of trifluoroethanol (TFE).
- TFE trifluoroethanol
- the samples are centrifuged at 17,000 ⁇ g for 30 minutes, and the pellets are denatured in sample buffer and analyzed by SDS-PAGE. Results are shown in FIG. 3 .
- Reference samples (Input) are shown for comparison.
- binding of target protein and peptide probe is clearly observed at the 40% TFE condition (compare left and right panels at 40% TFE, where the “peptide” band appears in the left panel but not the right panel). This indicates that the peptide came down into the spun pellet with the fibril form of the target protein, which is shown as monomer A ⁇ 42 on the SDA-PAGE because the fibril dissolves into monomer under SDS-PGE conditions.
- soluble peptide probes are combined with, for example, soluble target protein oligomers in an in vitro size exclusion chromatography-based interaction assay.
- Labeled peptide probe (SEQ ID NO:1, 2 ⁇ M) and target protein (A ⁇ oligomers, 2 ⁇ M) are incubated together for 90 minutes in Hepes buffer (10 mM, pH 7.0) and then loaded onto a G25 size exclusion column, which has a 5000 Da molecular weight cutoff. The column is subjected to centrifugation at 735 ⁇ g for 2 minutes. Eluants and column material are analyzed by a TECAN fluorimeter. This method is illustrated in FIG. 14A . Eluant also may be analyzed by SDS-PAGE (not shown).
- labeled peptide probe SEQ ID NO:4, 2 ⁇ M
- target protein A ⁇ oligomers, 2 ⁇ M
- Hepes buffer 10 mM, pH 7.0
- the column is subjected to centrifugation at 735 ⁇ g for 2 minutes.
- Eluants and column material are analyzed by a TECAN fluorimeter. This method is illustrated in FIG. 4A .
- unbound peptide probe will remain on the column due to its small size.
- the detection of labeled peptide probe in the eluant indicates the presence of target protein-peptide complexes in the eluant. This is confirmed by the results illustrated in FIG. 4B , which show that the fluorescently labeled peptide is recovered in the presence of the oligomer.
- soluble peptide probes are combined with, for example, soluble target protein oligomers in an in vitro affinity chromatography-based interaction assay.
- target protein is labeled with an affinity molecule, such as biotin, and incubated with a labeled peptide probe.
- the mixture is incubated with the capture moiety, such as streptavidin, on a support, for example a column or beads, such that the target protein is captured.
- the support can be examined for detection of the labeled peptide probe, which would indicate the presence of bound target protein-peptide probe complexes on the support.
- the bound material may be eluted and then examined for detection of the labeled peptide probe. Again, detection of the labeled peptide probe would indicate the presence of target protein-peptide probe complexes in the eluant.
- FIGS. 5A and 15A illustrate an affinity chromatography assay using biotin-labeled target protein and streptavidin-coated beads. This type of assay is useful, for example, for assessing the efficacy of a given peptide probe.
- Labeled peptide probe (SEQ ID NO:1, 2 ⁇ M) and biotinylated target protein (A ⁇ 42 oligomers, 2 ⁇ M) are incubated in PBS for 30 minutes. The mixture is then subjected to a capture step using magnetic beads coated with streptavidin. The beads are washed with PBS to remove unbound material and the captured material is analyzed by SDS-PAGE.
- FIG. 15B illustrates the results.
- labeled peptide probe is only detected in the captured material, in the presence of high molecular weight oligomers, indicating that the peptide probe binds the target protein oligolmers.
- the captured material also could be analyzed by fluorescent profile (not shown).
- labeled peptide probe SEQ ID NO:2, 4 ⁇ M
- biotinylated target protein A ⁇ 42 oligomers, 4 ⁇ N
- FIG. 5B illustrates the results.
- the left panel shows that the magnetic streptavidin beads pull down synthetic biotinylated oligomer (compare lanes 2 and 3 to lane 1).
- Lane 4 shows the peptide probe (Peptide 22) loaded directly on the gel at a concentration of 4 ⁇ M, analogous to 100% binding.
- Lane 2 shows the binding reaction (Protocol A) loaded onto the gel—note that A ⁇ oligomer and peptide probe co-elute.
- Lanes 3 and 4 show binding reactions prepared according to Protocol B without (Lane 3) and with (Lane 4) the addition of biotinylated A ⁇ 42 oligomer.
- the variant sequence of the peptide probe is designed to increase the signal difference between any signal associated with peptide that is not bound to target protein and a signal associated with peptide that is bound to target protein, such as by increasing the signal difference between any signal associated with the (unbound) random/alpha-helix conformation of the peptide (e.g., background signal) and a signal associated with the (bound) ⁇ -sheet conformation of the peptide.
- a signal associated with the (unbound) random/alpha-helix conformation of the peptide e.g., background signal
- TFE is an organic solvent that induces alpha-helical conformations in peptides. Peptides with a significant difference in signal between its alpha-helix and ⁇ -sheet conformations may be particularly useful for the reasons discussed above.
- Peptide Probe 22 (SEQ ID NO:2, 2 ⁇ M) labeled at each terminus with pyrene is incubated in 0 to 80% TFE in tris buffer (10 mM Tris, pH 7.0) for 30 min. The reaction is measured by TECAN fluorimeter, and the excimer:monomer fluorescence ratio is recorded. As shown in FIG. 6A , the maximal signal response of Peptide 22 in buffer (signal gain from 80 to 20% TFE) is approximately 100 ratio units, which is 4 times greater than that of the reference peptide (SEQ ID NO:1).
- Peptide 22 When tested for the ability to undergo conformational change in the presence of a fibrillar amyloid target protein, Peptide 22 performs 2.6 times greater than the reference peptide (SEQ ID NO:1). That is, Peptide 22 exhibits a maximal signal gain in the presence of fibrillar amyloid target protein that is about 2.6 times greater than the maximal signal gain of the reference peptide.
- Peptide 38 (SEQ ID NO:3) labeled at each terminus with a pyrene moiety is used in this example.
- the peptide is highly alpha helical (38%), and the proportion of alpha helix conformation is even greater at pH 4 (small dashed line) (52%).
- the addition of 500 mM NaCl greatly diminishes the alpha helix conformation in favor of a ⁇ -sheet conformation, at both pH levels.
- the alpha helix content is 4%
- the ⁇ -sheet content is 40% (up from 10% without the salt).
- FIG. 8 shows the conformation of di-pyrene labeled Peptide 38 (SEQ ID NO:3) and A ⁇ 42 oligomer (target protein), each separately as well as in combination.
- the peptide alone is highly alpha helical (36%).
- the peptide undergoes a conformation shift that results in increased ⁇ -sheet conformation, and decreased ⁇ helix conformation. That is, the secondary structure of Peptide 38 is altered such that the proportion of ⁇ helix is halved (18%), while the proportion of ⁇ -sheet structure is enhanced from 20% to 31%.
- Peptide 38 adopts a ⁇ -sheet conformation upon contact with the A ⁇ 42 oligomer target protein, and that conformation change can be detected by CD analysis.
- FIG. 9B shows the pyrene fluorescence of free di-pyrene labeled Peptide 45 (SEQ ID NO:4).
- the excimer fluorescence associated with the ⁇ -sheet conformation has a different wavelength than the monomer fluorescence associated with the alpha-helix conformation, and the excimer:monomer fluorescence ratio is 9:1.
- FIG. 9A shows the pyrene fluorescence of the di-pyrene labeled Peptide 45 in the presence of different amounts of A ⁇ 42 oligomer target protein (0, 0.03, 0.1 and 0.3 ⁇ M).
- a ⁇ 42 oligomer target protein results in a dose-dependent shift of the excimer:monomer fluorescence ratio to 20:1 at the highest A ⁇ 42 oligomer concentration (0.3 ⁇ M).
- This change in excimer:monomer fluorescence ratio reflects a corresponding conformational change in the peptide, that results in increased ⁇ -sheet conformation, and decreased ⁇ helix conformation.
- Peptide 45 adopts a ⁇ -sheet conformation in a dose-dependent manner upon contact with the A ⁇ 42 oligomer target protein, and that conformation change can be detecting by measuring pyrene fluorescence.
- FIG. 10 schematically illustrates several different embodiments of the methods and probes described herein.
- An A ⁇ fiber assay may be conducted in an organic solvent, such as 40% TFE.
- an organic solvent such as 40% TFE.
- peptide probe e.g., SEQ ID NO:1 labeled at each terminus with pyrene incubated in 40% TFE in the absence of A ⁇ fibers exhibits a conformation that is primarily alpha helical, as can be observed by CD spectroscopy (data not shown). This conformation is associated with the monomer or self fluorescence of the pyrene moieties (370-410 nm; see FIG. 6 ).
- the probe Upon introduction of an A ⁇ fiber substrate, the probe adopts a ⁇ -sheet conformation. This conformation is associated with the excimer fluorescence of the pyrene moieties (430-530 nm; see FIG. 6 ).
- An A ⁇ oligomer assay may be conducted in an aqueous solvent, such as water.
- aqueous solvent such as water.
- peptide probe 22 e.g., SEQ ID NO:2 labeled at each terminus with pyrene in the absence of A ⁇ oligomer exhibits a conformation that associated with the excimer fluorescence of the pyrene moieties (see FIG. 11 ), and so is believed to have an increased ⁇ -sheet structure.
- the fluorescence profile shifts to primarily self-fluorescence (monomeric) (see FIG. 11 ), which is associated with reduced ⁇ -sheet structure, or increased alpha helix structure.
- a peptide probe can be labeled at each terminus with members of a FRET pair (e.g. FAM and EDANS).
- FRET labels do not interact in the absence A ⁇ oligomer, whereas upon introduction of A ⁇ oligomer, the fluorescence profile shifts to FRET-fluorescence, which is associated with increased ⁇ -sheet structure.
- Peptide probes AD293 (SEQ ID NO:52), AD292 (SE ID NO:53), AD 291 (SEQ ID NO:54) and AD 290 (SEQ ID NO:55) have exhibited fluorescence behavior consistent with this type of conformation change.
- FIG. 11 illustrates the fluorescence spectra for Peptide 22 labeled at each terminus with pyrene and incubated in aqueous conditions for several hours at room temperature in 10 mM Hepes (pH 7.0).
- Peptide 22 exhibits a time-dependent conformation shift from pyrene excimeric (emission maxima at ⁇ 460 and 485 nm) to pyrene monomeric (emission maxima at ⁇ 380 and 400 nm).
- This example illustrates the specificity of Peptide 22 for A ⁇ oligomers.
- Peptide 22 (100 nM) is incubated in water for 15 hours at room temperature with equimolar concentrations (0, 30, 100, and 300 nN) of several potential A0 substrates: A ⁇ 42 oligomer (type 1); A ⁇ 42 oligomer (type 2); A ⁇ 1-42 monomer; A ⁇ 1-40 monomer; A ⁇ 1-42 fiber; A ⁇ 1-40 fiber; bovine serum albumin (control substrate); and carbonic anhydrase (control substrate).
- a ⁇ 42 oligomer type 1
- a ⁇ 42 oligomer type 2
- a ⁇ 1-42 monomer A ⁇ 1-40 monomer
- a ⁇ 1-42 fiber A ⁇ 1-40 fiber
- bovine serum albumin control substrate
- carbonic anhydrase control substrate
- Peptide 22 exhibits a dose-dependent fluorescence response with regard to the two A ⁇ oligomer substrates, characterized by an increase in pyrene monomeric (self) fluorescence with increased oligomer load.
- a ⁇ 42 monomer and A ⁇ 40 fiber induced a slight fluorescence response at the high substrate load.
- Peptide 22 (70 nM) is incubated with 0, 30, 100, or 300 nN synthetic A842 oligomer at 25 C, and fluorescence emission spectra is recorded after 3 hours incubation.
- FIG. 13 top panel
- Peptide 22 displays very little pyrene monomer (self) fluorescence (370-420 nm).
- pyrene monomer (self) fluorescence increases with A ⁇ 42 oligomer concentration in a dose-dependent manner. For example, and as shown in FIG.
- Peptide 22 shows greater pyrene monomer fluorescence when incubated with 300 nN A ⁇ 42 oligomer than with 30 A ⁇ 42 oligomer.
- solid line no A ⁇ 42 oligomer; dashed/dot line—30 nN A ⁇ 42 oligomer; large dashed line—100 nN A ⁇ 42 oligomer; small dashed line—300 nN A ⁇ 42 oligomer
- Circular dichroism (CD) analysis is used to determine the secondary structure of Peptide 22, synthetic A ⁇ 42 oligomer, and a mixture thereof. Samples are incubated in 10 mM sodium phosphate (pH 7.0) for 3 hours at room temperature before measuring CD. For each sample, the relative ellipticity is evaluated from 190-260 nm.
- FIG. 13 shows CD profiles of 4 ⁇ M Peptide 22 (solid line); 33 nM synthetic A ⁇ 42 oligomer (dashed/dot line); the arithmetical sum of the two individual samples (large dashed line); a mixture of Peptide 22 and synthetic A ⁇ 42 oligomer mixture (small dashed line). Each data set represents the average of three separate spectral scans.
- Exemplary peptide probes designed in accordance with the principles described above are set forth in Table 1 below. As shown by shading in the sequences, most of the peptide sequences are based on amino acids 16-35 of the A ⁇ 3 peptide (WT; SEQ ID NO:1), which is a ⁇ -sheet forming region of the A ⁇ peptide (others are based on longer portions of the A ⁇ peptide), with an added C-terminal lysine residue to facilitate labelling.
- the category (or categories) of the sequence variants are indicated in the table (e.g., modified to improve stability, provide a salt bridge, increase solubility, facilitate alpha-helix formation, destabilize ⁇ -sheet structure, add an A ⁇ binding motif, etc.).
- peptide probe labeling including different label sites and label pairs. Unless indicated otherwise, all peptides were labeled with two pyrene labels, one on the N-terminal amine, and the other on a side chain of a C-terminal lysine residue. Additionally, unless indicated otherwise, all constructs contain a C-terminal amide in place of the carboxyl group.
- the peptides based on naturally-occurring mutants are expected to have an enhanced ability to form aggregate species.
- Peptide probes Peptide 22 (SEQ ID NO:2), Peptide 22 variation 1 (SEQ ID NO:14), Peptide 22 variation 2 (SEQ ID NO:15), Peptide 38 (SEQ ID NO:3) and Peptide 45 (SEQ ID NO:4) have been shown to react with A ⁇ 42 oligomers in an aqueous assay. Surprisingly, this reactivity was characterized by a transition from primarily pyrene excimer fluorescence to pyrene self-fluorescence.
- peptides were constructed with FRET pairs or with Dabcyl quencher moieties that quench the fluorescence signaling of the paired fluorescence moiety (e.g, EDANS). These peptides with alternative label pairs may allow for greater sensitivity in aqueous assays.
- a peptide probe that undergoes a conformational shift from a ( ⁇ -sheet conformation to a reduced ⁇ -sheet or increased alpha helix conformation (or other conformation) upon interaction with A ⁇ 42 oligomer is labeled with a fluorescent label/quencher pair as illustrated in Table 1 above
- the fluorescent label signal initially is quenched, and then is unquenched when the peptide probe undergoes the conformational shift upon interaction with A ⁇ 42 oligomer, resulting in induction of the fluorescent signal.
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Biomedical Technology (AREA)
- Molecular Biology (AREA)
- Immunology (AREA)
- General Health & Medical Sciences (AREA)
- Medicinal Chemistry (AREA)
- Biochemistry (AREA)
- Organic Chemistry (AREA)
- Hematology (AREA)
- Urology & Nephrology (AREA)
- Neurology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Neurosurgery (AREA)
- Pathology (AREA)
- Biotechnology (AREA)
- Analytical Chemistry (AREA)
- Food Science & Technology (AREA)
- Microbiology (AREA)
- General Physics & Mathematics (AREA)
- Cell Biology (AREA)
- Physics & Mathematics (AREA)
- Genetics & Genomics (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Gastroenterology & Hepatology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Toxicology (AREA)
- Zoology (AREA)
- Animal Behavior & Ethology (AREA)
- Veterinary Medicine (AREA)
- Public Health (AREA)
- Pharmacology & Pharmacy (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Psychiatry (AREA)
- Hospice & Palliative Care (AREA)
- Psychology (AREA)
Priority Applications (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US12/695,968 US20100233095A1 (en) | 2009-01-30 | 2010-01-28 | Conformationally dynamic peptides |
US14/299,432 US9696316B2 (en) | 2009-01-30 | 2014-06-09 | Conformationally dynamic peptides |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US14865909P | 2009-01-30 | 2009-01-30 | |
US12/695,968 US20100233095A1 (en) | 2009-01-30 | 2010-01-28 | Conformationally dynamic peptides |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US14/299,432 Continuation US9696316B2 (en) | 2009-01-30 | 2014-06-09 | Conformationally dynamic peptides |
Publications (1)
Publication Number | Publication Date |
---|---|
US20100233095A1 true US20100233095A1 (en) | 2010-09-16 |
Family
ID=42174089
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US12/695,968 Abandoned US20100233095A1 (en) | 2009-01-30 | 2010-01-28 | Conformationally dynamic peptides |
US14/299,432 Active 2030-02-26 US9696316B2 (en) | 2009-01-30 | 2014-06-09 | Conformationally dynamic peptides |
Family Applications After (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US14/299,432 Active 2030-02-26 US9696316B2 (en) | 2009-01-30 | 2014-06-09 | Conformationally dynamic peptides |
Country Status (9)
Country | Link |
---|---|
US (2) | US20100233095A1 (fr) |
EP (1) | EP2391644B1 (fr) |
JP (1) | JP2012516452A (fr) |
CN (1) | CN102365295A (fr) |
AU (1) | AU2010208181B2 (fr) |
CA (1) | CA2750409C (fr) |
HK (1) | HK1164343A1 (fr) |
MX (1) | MX2011007916A (fr) |
WO (1) | WO2010088411A2 (fr) |
Cited By (14)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20080095706A1 (en) * | 2006-07-28 | 2008-04-24 | Adlyfe, Inc. | Peptide probes for diagnostics and therapeutics |
US20120282169A1 (en) * | 2009-11-06 | 2012-11-08 | Adlyfe, Inc. | Detection and treatment of traumatic brain injury |
WO2012178023A1 (fr) * | 2011-06-23 | 2012-12-27 | Board Of Regents, The University Of Texas System | Identifier des peptides au niveau d'une seule molécule |
WO2013016578A2 (fr) * | 2011-07-26 | 2013-01-31 | University Of Southern California | Libération contrôlée de produits biopharmaceutiques oculaires au moyen de polymères protéiques biosensibles |
US8580922B2 (en) | 2011-03-04 | 2013-11-12 | Shire Human Genetic Therapies, Inc. | Peptide linkers for polypeptide compositions and methods for using same |
WO2012122042A3 (fr) * | 2011-03-04 | 2014-03-13 | Shire Human Genetic Therapies, Inc. | Lieurs peptidiques pour compositions de polypeptide et procédés pour les utiliser |
EP2746402A1 (fr) * | 2013-03-12 | 2014-06-25 | Academisch Medisch Centrum | Procédé de pronostic de la maladie d'Alzheimer et substrats pour utilisation associée |
US20160069908A1 (en) * | 2013-03-15 | 2016-03-10 | Peter STYS | Methods for analyzing blood to detect diseases associated with abnormal protein aggregation |
US9638702B2 (en) | 2001-05-31 | 2017-05-02 | System Of Systems Analytics, Inc. | Detection of conformationally altered proteins |
US9696316B2 (en) | 2009-01-30 | 2017-07-04 | System Of Systems Analytics, Inc. | Conformationally dynamic peptides |
US9795692B2 (en) | 2011-04-27 | 2017-10-24 | System Of Systems Analytics, Inc. | Ocular detection of amyloid proteins |
US11162952B2 (en) | 2014-09-15 | 2021-11-02 | Board Of Regents, The University Of Texas System | Single molecule peptide sequencing |
US11435358B2 (en) | 2011-06-23 | 2022-09-06 | Board Of Regents, The University Of Texas System | Single molecule peptide sequencing |
WO2023245057A3 (fr) * | 2022-06-15 | 2024-01-18 | The Board Of Regents Of The University Of Texas System | Sonde basée sur structure pour détection de fibrilles et d'agrégats amyloïdes de transthyrétine |
Families Citing this family (10)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP2480560B1 (fr) | 2009-09-22 | 2018-02-21 | Medicago Inc. | Procédé de préparation de protéines dérivées de plantes |
EP2673003B1 (fr) | 2011-02-10 | 2018-11-07 | Ruprecht-Karls-Universität Heidelberg | Peptides modifiés hydrophobes pour un diagnostic spécifique du foie |
ES2663368T3 (es) | 2011-02-10 | 2018-04-12 | Ruprecht-Karls-Universität Heidelberg | Péptidos modificados hidrófobos y uso de los mismos para su direccionamiento específico al hígado |
EP2688912B1 (fr) * | 2011-03-23 | 2016-11-09 | Agency For Science, Technology And Research | Biodétecteurs de protéines recombinantes et procédé pour détecter la présence d'une molécule d'analyte |
TWI620816B (zh) | 2011-03-23 | 2018-04-11 | 苜蓿股份有限公司 | 植物衍生蛋白回收方法 |
EP3265812A2 (fr) * | 2015-03-04 | 2018-01-10 | University College Dublin National University Of Ireland, Dublin | Capteurs moléculaires |
CN105254655B (zh) * | 2015-11-20 | 2017-03-22 | 江汉大学 | 一种基于bodipy的荧光氨基酸及其合成方法与应用 |
JP2019532301A (ja) * | 2016-07-15 | 2019-11-07 | イ,ジフン | 血液凝固因子検出のための化学発光バイオセンサー |
MX2020004338A (es) | 2017-10-25 | 2020-10-14 | Janssen Pharmaceuticals Inc | Composiciones de peptidos tau fosforilados y sus usos. |
WO2019134070A1 (fr) * | 2018-01-02 | 2019-07-11 | Rui Jin Hospital, Shanghai Jiao Tong University School Of Medicine | Panda en tant que nouvel agent thérapeutique |
Citations (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6821504B2 (en) * | 2001-05-23 | 2004-11-23 | New York University | Detection of alzheimer's amyloid by magnetic resonance imaging |
US20060057701A1 (en) * | 2004-07-30 | 2006-03-16 | Arnon Rosenthal | Antibodies directed against amyloid-beta peptide and methods using same |
US7166471B2 (en) * | 2001-05-31 | 2007-01-23 | Arete Associates | Misfolded protein sensor method in body fluids |
US20080095706A1 (en) * | 2006-07-28 | 2008-04-24 | Adlyfe, Inc. | Peptide probes for diagnostics and therapeutics |
US20080171341A1 (en) * | 2001-05-31 | 2008-07-17 | Adlyfe, Inc. | Detection of conformationally altered proteins and prions |
US20090238754A1 (en) * | 2008-03-21 | 2009-09-24 | Adlyfe, Inc. | Use of pyrene to carry peptides across the blood brain barrier |
US20090274621A1 (en) * | 2008-03-21 | 2009-11-05 | Adlyfe, Inc | Use of pyrene to carry non-peptide agents across the blood brain barrier |
US20110081660A1 (en) * | 2005-02-15 | 2011-04-07 | Adlyfe, Inc. | Method for Detecting Misfolded Proteins and Prions |
Family Cites Families (9)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5565186A (en) | 1994-05-13 | 1996-10-15 | The Regents Of The University Of California | Method of detecting prions in a sample and transgenic animal used for same |
US6448087B1 (en) | 1997-12-12 | 2002-09-10 | The Regents Of The University Of California | Method for determining and modifying protein/peptide solubility |
JP2004173695A (ja) * | 2002-11-25 | 2004-06-24 | F Hoffmann La Roche Ag | Dpp−ivの結晶構造およびその使用方法 |
JP2004226176A (ja) * | 2003-01-21 | 2004-08-12 | Orion Corp | CA−ATPaseに対するホスホランバン機能を不活化する化合物(ホスホランバン不活性化剤) |
JP5414972B2 (ja) * | 2003-12-23 | 2014-02-12 | バイオキット, エセ.アー. | 病原体感染の検出のための組成物および方法 |
US20060057671A1 (en) | 2004-09-10 | 2006-03-16 | Orser Cindy S | Immobilized probes and methods of detecting conformationally altered prion proteins |
US7282373B2 (en) * | 2004-12-23 | 2007-10-16 | Rutgers, The State University Of New Jersey | Ultra-high specificity fluorescent labeling |
CA2750409C (fr) | 2009-01-30 | 2019-03-05 | Adlyfe, Inc. | Sondes de peptide de proteine beta amyloide |
WO2011056958A2 (fr) * | 2009-11-06 | 2011-05-12 | Adlyfe, Inc. | Détection et traitement d'une lésion cérébrale traumatique |
-
2010
- 2010-01-28 CA CA2750409A patent/CA2750409C/fr active Active
- 2010-01-28 WO PCT/US2010/022435 patent/WO2010088411A2/fr active Application Filing
- 2010-01-28 CN CN2010800148263A patent/CN102365295A/zh active Pending
- 2010-01-28 EP EP10702969.6A patent/EP2391644B1/fr active Active
- 2010-01-28 MX MX2011007916A patent/MX2011007916A/es not_active Application Discontinuation
- 2010-01-28 AU AU2010208181A patent/AU2010208181B2/en active Active
- 2010-01-28 JP JP2011548306A patent/JP2012516452A/ja active Pending
- 2010-01-28 US US12/695,968 patent/US20100233095A1/en not_active Abandoned
-
2012
- 2012-05-18 HK HK12104909.8A patent/HK1164343A1/zh unknown
-
2014
- 2014-06-09 US US14/299,432 patent/US9696316B2/en active Active
Patent Citations (10)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6821504B2 (en) * | 2001-05-23 | 2004-11-23 | New York University | Detection of alzheimer's amyloid by magnetic resonance imaging |
US7166471B2 (en) * | 2001-05-31 | 2007-01-23 | Arete Associates | Misfolded protein sensor method in body fluids |
US20080171341A1 (en) * | 2001-05-31 | 2008-07-17 | Adlyfe, Inc. | Detection of conformationally altered proteins and prions |
US7691639B2 (en) * | 2001-05-31 | 2010-04-06 | Adlyfe, Inc. | Misfolded protein sensor method |
US8062895B2 (en) * | 2001-05-31 | 2011-11-22 | Adlyfe, Inc. | Misfolded protein sensor method |
US20060057701A1 (en) * | 2004-07-30 | 2006-03-16 | Arnon Rosenthal | Antibodies directed against amyloid-beta peptide and methods using same |
US20110081660A1 (en) * | 2005-02-15 | 2011-04-07 | Adlyfe, Inc. | Method for Detecting Misfolded Proteins and Prions |
US20080095706A1 (en) * | 2006-07-28 | 2008-04-24 | Adlyfe, Inc. | Peptide probes for diagnostics and therapeutics |
US20090238754A1 (en) * | 2008-03-21 | 2009-09-24 | Adlyfe, Inc. | Use of pyrene to carry peptides across the blood brain barrier |
US20090274621A1 (en) * | 2008-03-21 | 2009-11-05 | Adlyfe, Inc | Use of pyrene to carry non-peptide agents across the blood brain barrier |
Cited By (26)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9638702B2 (en) | 2001-05-31 | 2017-05-02 | System Of Systems Analytics, Inc. | Detection of conformationally altered proteins |
US8673579B2 (en) | 2006-07-28 | 2014-03-18 | Adlyfe, Inc. | Peptide probes for diagnostics and therapeutics |
US20080095706A1 (en) * | 2006-07-28 | 2008-04-24 | Adlyfe, Inc. | Peptide probes for diagnostics and therapeutics |
US9696316B2 (en) | 2009-01-30 | 2017-07-04 | System Of Systems Analytics, Inc. | Conformationally dynamic peptides |
US20120282169A1 (en) * | 2009-11-06 | 2012-11-08 | Adlyfe, Inc. | Detection and treatment of traumatic brain injury |
US9206235B2 (en) | 2011-03-04 | 2015-12-08 | Shire Human Genetic Therapies, Inc. | Peptide linkers for polypeptide compositions and methods for using same |
US9932568B2 (en) | 2011-03-04 | 2018-04-03 | Shire Human Genetic Therapies, Inc. | Peptide linkers for polypeptide compositions and methods for using same |
US8580922B2 (en) | 2011-03-04 | 2013-11-12 | Shire Human Genetic Therapies, Inc. | Peptide linkers for polypeptide compositions and methods for using same |
CN103764162A (zh) * | 2011-03-04 | 2014-04-30 | 夏尔人类遗传治疗公司 | 用于多肽组成物的肽连接物及其使用方法 |
CN103764162B (zh) * | 2011-03-04 | 2017-03-08 | 夏尔人类遗传治疗公司 | 用于多肽组成物的肽连接物及其使用方法 |
WO2012122042A3 (fr) * | 2011-03-04 | 2014-03-13 | Shire Human Genetic Therapies, Inc. | Lieurs peptidiques pour compositions de polypeptide et procédés pour les utiliser |
US9795692B2 (en) | 2011-04-27 | 2017-10-24 | System Of Systems Analytics, Inc. | Ocular detection of amyloid proteins |
US11435358B2 (en) | 2011-06-23 | 2022-09-06 | Board Of Regents, The University Of Texas System | Single molecule peptide sequencing |
US11105812B2 (en) | 2011-06-23 | 2021-08-31 | Board Of Regents, The University Of Texas System | Identifying peptides at the single molecule level |
GB2510488A (en) * | 2011-06-23 | 2014-08-06 | Univ Texas | Identifying peptides at the single molecule level |
US9625469B2 (en) | 2011-06-23 | 2017-04-18 | Board Of Regents, The University Of Texas System | Identifying peptides at the single molecule level |
GB2510488B (en) * | 2011-06-23 | 2020-04-08 | Univ Texas | Identifying peptides at the single molecule level |
WO2012178023A1 (fr) * | 2011-06-23 | 2012-12-27 | Board Of Regents, The University Of Texas System | Identifier des peptides au niveau d'une seule molécule |
DE112012002570B4 (de) | 2011-06-23 | 2023-11-23 | Board Of Regents, The University Of Texas System | Identifizieren von Peptiden auf der Einzelmolekülebene |
US9102763B2 (en) | 2011-07-26 | 2015-08-11 | University Of Southern California | Controlled release of ocular biopharmaceuticals using bioresponsive protein polymers |
WO2013016578A2 (fr) * | 2011-07-26 | 2013-01-31 | University Of Southern California | Libération contrôlée de produits biopharmaceutiques oculaires au moyen de polymères protéiques biosensibles |
WO2013016578A3 (fr) * | 2011-07-26 | 2013-05-10 | University Of Southern California | Libération contrôlée de produits biopharmaceutiques oculaires au moyen de polymères protéiques biosensibles |
EP2746402A1 (fr) * | 2013-03-12 | 2014-06-25 | Academisch Medisch Centrum | Procédé de pronostic de la maladie d'Alzheimer et substrats pour utilisation associée |
US20160069908A1 (en) * | 2013-03-15 | 2016-03-10 | Peter STYS | Methods for analyzing blood to detect diseases associated with abnormal protein aggregation |
US11162952B2 (en) | 2014-09-15 | 2021-11-02 | Board Of Regents, The University Of Texas System | Single molecule peptide sequencing |
WO2023245057A3 (fr) * | 2022-06-15 | 2024-01-18 | The Board Of Regents Of The University Of Texas System | Sonde basée sur structure pour détection de fibrilles et d'agrégats amyloïdes de transthyrétine |
Also Published As
Publication number | Publication date |
---|---|
WO2010088411A3 (fr) | 2010-09-16 |
AU2010208181B2 (en) | 2015-04-30 |
JP2012516452A (ja) | 2012-07-19 |
CA2750409C (fr) | 2019-03-05 |
MX2011007916A (es) | 2011-11-18 |
CA2750409A1 (fr) | 2010-08-05 |
WO2010088411A2 (fr) | 2010-08-05 |
US9696316B2 (en) | 2017-07-04 |
CN102365295A (zh) | 2012-02-29 |
EP2391644B1 (fr) | 2016-04-13 |
HK1164343A1 (zh) | 2012-09-21 |
EP2391644A2 (fr) | 2011-12-07 |
US20150133632A1 (en) | 2015-05-14 |
AU2010208181A1 (en) | 2011-08-11 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US9696316B2 (en) | Conformationally dynamic peptides | |
EP2156181B1 (fr) | Sondes peptidiques pour des diagnostics et des produits thérapeutiques | |
US20180028691A1 (en) | Ocular detection of amyloid proteins | |
US20120282169A1 (en) | Detection and treatment of traumatic brain injury | |
Levin et al. | Single particle analysis of manganese-induced prion protein aggregates | |
US10139419B2 (en) | Methods for detecting Aβ oligomers |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
AS | Assignment |
Owner name: ADLYFE, INC., MARYLAND Free format text: ASSIGNMENT OF ASSIGNORS INTEREST;ASSIGNORS:DUAN, D. ROXANNE;MOLL, JONATHAN R.;RUDOLPH, ALAN;AND OTHERS;SIGNING DATES FROM 20100325 TO 20100409;REEL/FRAME:024229/0630 |
|
STCB | Information on status: application discontinuation |
Free format text: ABANDONED -- FAILURE TO RESPOND TO AN OFFICE ACTION |