SG11202006511YA - Bisulfite-free, base-resolution identification of cytosine modifications - Google Patents

Bisulfite-free, base-resolution identification of cytosine modifications

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Publication number
SG11202006511YA
SG11202006511YA SG11202006511YA SG11202006511YA SG11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA
Authority
SG
Singapore
Prior art keywords
bisulfite
free
base
resolution identification
cytosine modifications
Prior art date
Application number
SG11202006511YA
Other languages
English (en)
Inventor
Chunxiao Song
Yibin Liu
Original Assignee
Ludwig Inst For Cancer Res Ltd
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Publication date
Application filed by Ludwig Inst For Cancer Res Ltd filed Critical Ludwig Inst For Cancer Res Ltd
Publication of SG11202006511YA publication Critical patent/SG11202006511YA/en

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    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004Oxidoreductases (1.)
    • C12N9/0071Oxidoreductases (1.) acting on paired donors with incorporation of molecular oxygen (1.14)
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1048Glycosyltransferases (2.4)
    • C12N9/1051Hexosyltransferases (2.4.1)
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    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/10Nitrogen as only ring hetero atom
    • C12P17/12Nitrogen as only ring hetero atom containing a six-membered hetero ring
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/16Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms containing two or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y204/00Glycosyltransferases (2.4)
    • C12Y204/01Hexosyltransferases (2.4.1)
    • C12Y204/01026DNA alpha-glucosyltransferase (2.4.1.26)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y204/00Glycosyltransferases (2.4)
    • C12Y204/01Hexosyltransferases (2.4.1)
    • C12Y204/01027DNA beta-glucosyltransferase (2.4.1.27)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/154Methylation markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Medicinal Chemistry (AREA)
  • Biomedical Technology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Enzymes And Modification Thereof (AREA)
SG11202006511YA 2018-01-08 2019-01-08 Bisulfite-free, base-resolution identification of cytosine modifications SG11202006511YA (en)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US201862614798P 2018-01-08 2018-01-08
US201862660523P 2018-04-20 2018-04-20
US201862771409P 2018-11-26 2018-11-26
PCT/US2019/012627 WO2019136413A1 (en) 2018-01-08 2019-01-08 Bisulfite-free, base-resolution identification of cytosine modifications

Publications (1)

Publication Number Publication Date
SG11202006511YA true SG11202006511YA (en) 2020-08-28

Family

ID=67143801

Family Applications (1)

Application Number Title Priority Date Filing Date
SG11202006511YA SG11202006511YA (en) 2018-01-08 2019-01-08 Bisulfite-free, base-resolution identification of cytosine modifications

Country Status (15)

Country Link
US (4) US12071660B2 (he)
EP (1) EP3737748A4 (he)
JP (2) JP7136899B2 (he)
KR (2) KR20230030037A (he)
CN (2) CN115181783A (he)
AU (2) AU2019205416B2 (he)
BR (1) BR112020013718A2 (he)
CA (1) CA3087915A1 (he)
IL (2) IL275850B2 (he)
MA (1) MA51633A (he)
MX (2) MX2020007259A (he)
NZ (1) NZ765943A (he)
SG (1) SG11202006511YA (he)
WO (1) WO2019136413A1 (he)
ZA (1) ZA202004769B (he)

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AU2019222723B2 (en) * 2018-02-14 2023-10-12 Clearnote Health, Inc. Methods for the epigenetic analysis of DNA, particularly cell-free DNA
CN113661249A (zh) 2019-01-31 2021-11-16 夸登特健康公司 用于分离无细胞dna的组合物和方法
KR20220015367A (ko) * 2019-05-31 2022-02-08 프리놈 홀딩스, 인크. 메틸화된 핵산의 고심도 시퀀싱 방법 및 시스템
CN114174534A (zh) * 2019-07-08 2022-03-11 路德维格癌症研究所 免亚硫酸氢盐的全基因组甲基化分析
CN110669824A (zh) * 2019-10-11 2020-01-10 广州迈森致远基因科技有限公司 低起始量血浆游离dna甲基化建库试剂盒及方法
CN110820050A (zh) * 2019-11-22 2020-02-21 北京吉因加科技有限公司 全基因组甲基化非重亚硫酸氢盐测序文库及构建
EP4103743A1 (en) 2020-02-11 2022-12-21 Ludwig Institute for Cancer Research Ltd Targeted, long-read nucleic acid sequencing for the determination of cytosine modifications
CN113373207A (zh) * 2020-02-25 2021-09-10 深圳华大基因科技服务有限公司 确定胞嘧啶修饰的方法
US11946044B2 (en) 2020-07-30 2024-04-02 Guardant Health, Inc. Methods for isolating cell-free DNA
EP4083231A1 (en) 2020-07-30 2022-11-02 Cambridge Epigenetix Limited Compositions and methods for nucleic acid analysis
AU2021329899A1 (en) 2020-08-19 2023-03-09 Exact Sciences Corporation Detecting non-hodgkin lymphoma
EP4211263A1 (en) 2020-09-14 2023-07-19 Ludwig Institute for Cancer Research Ltd Cytosine modification analysis
WO2022087309A1 (en) * 2020-10-23 2022-04-28 Guardant Health, Inc. Compositions and methods for analyzing dna using partitioning and base conversion
GB202017653D0 (en) 2020-11-09 2020-12-23 Cambridge Entpr Ltd Methods for detection of nucleotide modification
US20220243278A1 (en) 2021-01-29 2022-08-04 Mayo Foundation For Medical Education And Research Detecting the presence or absence of multiple types of cancer
WO2022171606A2 (en) 2021-02-09 2022-08-18 F. Hoffmann-La Roche Ag Methods for base-level detection of methylation in nucleic acids
GB202109469D0 (en) 2021-06-30 2021-08-11 Cambridge Entpr Ltd Methods for detecting modified nucleotides
AU2022318379A1 (en) * 2021-07-27 2024-02-08 The Chancellor, Masters And Scholars Of The University Of Oxford Compositions and methods related to tet-assisted pyridine borane sequencing for cell-free dna
CN113846160B (zh) * 2021-09-14 2024-08-20 翌圣生物科技(上海)股份有限公司 正向筛选的胞嘧啶甲基化快速检测方法及过氧钨酸盐在将5hmC氧化为thT中的应用
CN114085894A (zh) * 2021-11-03 2022-02-25 翌圣生物科技(上海)股份有限公司 核酸甲基化胞嘧啶转化方法
CN118202065A (zh) * 2021-11-15 2024-06-14 深圳华大智造科技股份有限公司 一种检测全基因组范围内的dna甲基化修饰的方法
EP4457357A2 (en) * 2021-12-29 2024-11-06 Foundation Medicine, Inc. Detection of genetic and epigenetic information in a single workflow
CN114045345B (zh) * 2022-01-07 2022-04-29 臻和(北京)生物科技有限公司 基于游离dna的基因组癌变信息检测系统和检测方法
AU2023234670A1 (en) * 2022-03-15 2024-01-18 Illumina, Inc. Concurrent sequencing of forward and reverse complement strands on separate polynucleotides for methylation detection
WO2023183841A2 (en) * 2022-03-23 2023-09-28 Exact Sciences Corporation Compositions and methods for tet-assisted oxidation of methylated nucleotide bases
WO2023187012A1 (en) 2022-03-31 2023-10-05 Illumina Cambridge Limited Compositions including aqueous amine borane complexes and polynucleotides, and methods of using the same to detect methylcytosine or hydroxymethylcytosine
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AU2019222723B2 (en) * 2018-02-14 2023-10-12 Clearnote Health, Inc. Methods for the epigenetic analysis of DNA, particularly cell-free DNA

Also Published As

Publication number Publication date
WO2019136413A1 (en) 2019-07-11
MX2020007259A (es) 2022-08-26
WO2019136413A4 (en) 2019-08-29
IL296932A (he) 2022-12-01
AU2019205416B2 (en) 2022-07-14
IL275850A (he) 2020-08-31
JP7136899B2 (ja) 2022-09-13
US11959136B2 (en) 2024-04-16
MX2022010611A (es) 2022-09-21
US20210317519A1 (en) 2021-10-14
IL275850B2 (he) 2023-03-01
NZ765943A (en) 2022-10-28
KR102503884B1 (ko) 2023-03-07
US20200370114A1 (en) 2020-11-26
AU2019205416A1 (en) 2020-07-23
EP3737748A4 (en) 2021-10-20
IL275850B (he) 2022-11-01
MA51633A (fr) 2020-11-18
JP2022174153A (ja) 2022-11-22
BR112020013718A2 (pt) 2020-12-01
CN111971386A (zh) 2020-11-20
JP2021509587A (ja) 2021-04-01
ZA202004769B (en) 2023-07-26
KR20200108319A (ko) 2020-09-17
CA3087915A1 (en) 2019-07-11
EP3737748A1 (en) 2020-11-18
JP7539948B2 (ja) 2024-08-26
US20220282323A1 (en) 2022-09-08
US11306355B2 (en) 2022-04-19
KR20230030037A (ko) 2023-03-03
CN115181783A (zh) 2022-10-14
US20220213543A1 (en) 2022-07-07
US11987843B2 (en) 2024-05-21
US12071660B2 (en) 2024-08-27
AU2022235598A1 (en) 2022-11-03

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