SG11202006511YA - Bisulfite-free, base-resolution identification of cytosine modifications - Google Patents

Bisulfite-free, base-resolution identification of cytosine modifications

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Publication number
SG11202006511YA
SG11202006511YA SG11202006511YA SG11202006511YA SG11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA SG 11202006511Y A SG11202006511Y A SG 11202006511YA
Authority
SG
Singapore
Prior art keywords
bisulfite
free
base
resolution identification
cytosine modifications
Prior art date
Application number
SG11202006511YA
Other languages
English (en)
Inventor
Chunxiao Song
Yibin Liu
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Ludwig Inst For Cancer Res Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
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Publication date
Application filed by Ludwig Inst For Cancer Res Ltd filed Critical Ludwig Inst For Cancer Res Ltd
Publication of SG11202006511YA publication Critical patent/SG11202006511YA/en

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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004Oxidoreductases (1.)
    • C12N9/0071Oxidoreductases (1.) acting on paired donors with incorporation of molecular oxygen (1.14)
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/1048Glycosyltransferases (2.4)
    • C12N9/1051Hexosyltransferases (2.4.1)
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    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/10Nitrogen as only ring hetero atom
    • C12P17/12Nitrogen as only ring hetero atom containing a six-membered hetero ring
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P17/00Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
    • C12P17/16Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms containing two or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
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    • C12Q1/6844Nucleic acid amplification reactions
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
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    • C12YENZYMES
    • C12Y204/00Glycosyltransferases (2.4)
    • C12Y204/01Hexosyltransferases (2.4.1)
    • C12Y204/01026DNA alpha-glucosyltransferase (2.4.1.26)
    • CCHEMISTRY; METALLURGY
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    • C12YENZYMES
    • C12Y204/00Glycosyltransferases (2.4)
    • C12Y204/01Hexosyltransferases (2.4.1)
    • C12Y204/01027DNA beta-glucosyltransferase (2.4.1.27)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/154Methylation markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Medicinal Chemistry (AREA)
  • Biomedical Technology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Enzymes And Modification Thereof (AREA)
SG11202006511YA 2018-01-08 2019-01-08 Bisulfite-free, base-resolution identification of cytosine modifications SG11202006511YA (en)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US201862614798P 2018-01-08 2018-01-08
US201862660523P 2018-04-20 2018-04-20
US201862771409P 2018-11-26 2018-11-26
PCT/US2019/012627 WO2019136413A1 (fr) 2018-01-08 2019-01-08 Identification par résolution de base sans bisulfite de modifications de cytosine

Publications (1)

Publication Number Publication Date
SG11202006511YA true SG11202006511YA (en) 2020-08-28

Family

ID=67143801

Family Applications (1)

Application Number Title Priority Date Filing Date
SG11202006511YA SG11202006511YA (en) 2018-01-08 2019-01-08 Bisulfite-free, base-resolution identification of cytosine modifications

Country Status (15)

Country Link
US (4) US20200370114A1 (fr)
EP (1) EP3737748A4 (fr)
JP (2) JP7136899B2 (fr)
KR (2) KR20230030037A (fr)
CN (2) CN115181783A (fr)
AU (2) AU2019205416B2 (fr)
BR (1) BR112020013718A2 (fr)
CA (1) CA3087915A1 (fr)
IL (2) IL296932A (fr)
MA (1) MA51633A (fr)
MX (2) MX2020007259A (fr)
NZ (1) NZ765943A (fr)
SG (1) SG11202006511YA (fr)
WO (1) WO2019136413A1 (fr)
ZA (1) ZA202004769B (fr)

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WO2020160414A1 (fr) 2019-01-31 2020-08-06 Guardant Health, Inc. Compositions et méthodes pour isoler de l'adn acellulaire
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CN110669824A (zh) * 2019-10-11 2020-01-10 广州迈森致远基因科技有限公司 低起始量血浆游离dna甲基化建库试剂盒及方法
CN110820050A (zh) * 2019-11-22 2020-02-21 北京吉因加科技有限公司 全基因组甲基化非重亚硫酸氢盐测序文库及构建
WO2021161192A1 (fr) 2020-02-11 2021-08-19 The Chancellor, Masters And Scholars Of The University Of Oxford Séquençage d'acide nucléique à lecture longue cible pour la détermination de modifications de cytosine
CN113373207A (zh) * 2020-02-25 2021-09-10 深圳华大基因科技服务有限公司 确定胞嘧啶修饰的方法
CA3187549A1 (fr) 2020-07-30 2022-02-03 Cambridge Epigenetix Limited Compositions et procedes d'analyse d'acides nucleiques
US11946044B2 (en) 2020-07-30 2024-04-02 Guardant Health, Inc. Methods for isolating cell-free DNA
US20230357852A1 (en) 2020-08-19 2023-11-09 Mayo Foundation For Medical Education And Research Detecting non-hodgkin lymphoma
WO2022053872A1 (fr) 2020-09-14 2022-03-17 The Chancellor, Masters And Scholars Of The University Of Oxford Analyse de modifications de cytosine
US20220154286A1 (en) * 2020-10-23 2022-05-19 Guardant Health, Inc. Compositions and methods for analyzing dna using partitioning and base conversion
GB202017653D0 (en) 2020-11-09 2020-12-23 Cambridge Entpr Ltd Methods for detection of nucleotide modification
JP2024506854A (ja) 2021-01-29 2024-02-15 マヨ ファウンデーション フォア メディカル エデュケーション アンド リサーチ 複数の種類のがんの有無の検出
JP2024506899A (ja) 2021-02-09 2024-02-15 エフ. ホフマン-ラ ロシュ アーゲー 核酸中のメチル化の塩基レベル検出のための方法
GB202109469D0 (en) 2021-06-30 2021-08-11 Cambridge Entpr Ltd Methods for detecting modified nucleotides
KR20240046525A (ko) * 2021-07-27 2024-04-09 더 챈슬러 마스터즈 앤드 스칼라스 오브 더 유니버시티 오브 옥스포드 세포-유리 dna에 대한 tet-보조 피리딘 보란 시퀀싱과 관련된 조성물 및 방법
CN113846160A (zh) * 2021-09-14 2021-12-28 翌圣生物科技(上海)股份有限公司 正向筛选的胞嘧啶甲基化快速检测方法及过氧钨酸盐在将5hmC氧化为thT中的应用
CN114085894A (zh) * 2021-11-03 2022-02-25 翌圣生物科技(上海)股份有限公司 核酸甲基化胞嘧啶转化方法
WO2023082240A1 (fr) * 2021-11-15 2023-05-19 深圳华大智造科技股份有限公司 Procédé de détection de modification de méthylation d'adn à l'échelle du génome
WO2023129965A2 (fr) * 2021-12-29 2023-07-06 Foundation Medicine, Inc. Détection d'informations génétiques et épigénétiques dans un flux de travail unique
CN114045345B (zh) * 2022-01-07 2022-04-29 臻和(北京)生物科技有限公司 基于游离dna的基因组癌变信息检测系统和检测方法
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WO2023183841A2 (fr) * 2022-03-23 2023-09-28 Exact Sciences Corporation Compositions et méthodes d'oxydation assistée par tet de bases nucléotidiques méthylées
WO2023187012A1 (fr) 2022-03-31 2023-10-05 Illumina Cambridge Limited Compositions comprenant des complexes amine-borane aqueux et des polynucléotides, et leurs procédés d'utilisation pour détecter la méthylcytosine ou l'hydroxyméthylcytosine
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AU2019205416B2 (en) 2022-07-14
MA51633A (fr) 2020-11-18
EP3737748A4 (fr) 2021-10-20
KR20230030037A (ko) 2023-03-03
US11987843B2 (en) 2024-05-21
US20200370114A1 (en) 2020-11-26
ZA202004769B (en) 2023-07-26
US11306355B2 (en) 2022-04-19
JP7136899B2 (ja) 2022-09-13
MX2020007259A (es) 2022-08-26
BR112020013718A2 (pt) 2020-12-01
WO2019136413A1 (fr) 2019-07-11
JP2021509587A (ja) 2021-04-01
US11959136B2 (en) 2024-04-16
US20220282323A1 (en) 2022-09-08
AU2022235598A1 (en) 2022-11-03
KR102503884B1 (ko) 2023-03-07
IL275850B (en) 2022-11-01
EP3737748A1 (fr) 2020-11-18
WO2019136413A4 (fr) 2019-08-29
CN115181783A (zh) 2022-10-14
NZ765943A (en) 2022-10-28
MX2022010611A (es) 2022-09-21
CA3087915A1 (fr) 2019-07-11
IL275850A (en) 2020-08-31
IL296932A (en) 2022-12-01
CN111971386A (zh) 2020-11-20
US20210317519A1 (en) 2021-10-14
US20220213543A1 (en) 2022-07-07
JP2022174153A (ja) 2022-11-22
AU2019205416A1 (en) 2020-07-23
IL275850B2 (en) 2023-03-01
KR20200108319A (ko) 2020-09-17

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