SG11201408813VA - Highly multiplex pcr methods and compositions - Google Patents

Highly multiplex pcr methods and compositions

Info

Publication number
SG11201408813VA
SG11201408813VA SG11201408813VA SG11201408813VA SG11201408813VA SG 11201408813V A SG11201408813V A SG 11201408813VA SG 11201408813V A SG11201408813V A SG 11201408813VA SG 11201408813V A SG11201408813V A SG 11201408813VA SG 11201408813V A SG11201408813V A SG 11201408813VA
Authority
SG
Singapore
Prior art keywords
compositions
multiplex pcr
pcr methods
highly multiplex
highly
Prior art date
Application number
SG11201408813VA
Other languages
English (en)
Inventor
Bernhard Zimmermann
Matthew M Hill
Philippe Gilbert Lacroute
Michael Dodd
Original Assignee
Natera Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Natera Inc filed Critical Natera Inc
Priority claimed from US13/683,604 external-priority patent/US20130123120A1/en
Publication of SG11201408813VA publication Critical patent/SG11201408813VA/en

Links

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/686Polymerase chain reaction [PCR]
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/10Ploidy or copy number detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
SG11201408813VA 2012-07-24 2012-11-21 Highly multiplex pcr methods and compositions SG11201408813VA (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201261675020P 2012-07-24 2012-07-24
US13/683,604 US20130123120A1 (en) 2010-05-18 2012-11-21 Highly Multiplex PCR Methods and Compositions
PCT/US2012/066339 WO2014018080A1 (en) 2012-07-24 2012-11-21 Highly multiplex pcr methods and compositions

Publications (1)

Publication Number Publication Date
SG11201408813VA true SG11201408813VA (en) 2015-02-27

Family

ID=49997695

Family Applications (1)

Application Number Title Priority Date Filing Date
SG11201408813VA SG11201408813VA (en) 2012-07-24 2012-11-21 Highly multiplex pcr methods and compositions

Country Status (10)

Country Link
JP (10) JP6392222B2 (ja)
KR (1) KR101890466B1 (ja)
CN (1) CN104685064A (ja)
AU (1) AU2012385961B9 (ja)
CA (1) CA2877493C (ja)
HK (1) HK1211058A1 (ja)
IL (1) IL236435A0 (ja)
RU (1) RU2650790C2 (ja)
SG (1) SG11201408813VA (ja)
WO (1) WO2014018080A1 (ja)

Families Citing this family (56)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10083273B2 (en) 2005-07-29 2018-09-25 Natera, Inc. System and method for cleaning noisy genetic data and determining chromosome copy number
US11111543B2 (en) 2005-07-29 2021-09-07 Natera, Inc. System and method for cleaning noisy genetic data and determining chromosome copy number
US10081839B2 (en) 2005-07-29 2018-09-25 Natera, Inc System and method for cleaning noisy genetic data and determining chromosome copy number
US11111544B2 (en) 2005-07-29 2021-09-07 Natera, Inc. System and method for cleaning noisy genetic data and determining chromosome copy number
US9424392B2 (en) 2005-11-26 2016-08-23 Natera, Inc. System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals
CA2731991C (en) 2008-08-04 2021-06-08 Gene Security Network, Inc. Methods for allele calling and ploidy calling
ES2640776T3 (es) 2009-09-30 2017-11-06 Natera, Inc. Métodos para denominar de forma no invasiva ploidía prenatal
AU2011255641A1 (en) 2010-05-18 2012-12-06 Natera, Inc. Methods for non-invasive prenatal ploidy calling
US20190010543A1 (en) 2010-05-18 2019-01-10 Natera, Inc. Methods for simultaneous amplification of target loci
US11326208B2 (en) 2010-05-18 2022-05-10 Natera, Inc. Methods for nested PCR amplification of cell-free DNA
US11332793B2 (en) 2010-05-18 2022-05-17 Natera, Inc. Methods for simultaneous amplification of target loci
US11322224B2 (en) 2010-05-18 2022-05-03 Natera, Inc. Methods for non-invasive prenatal ploidy calling
US11939634B2 (en) 2010-05-18 2024-03-26 Natera, Inc. Methods for simultaneous amplification of target loci
US11339429B2 (en) 2010-05-18 2022-05-24 Natera, Inc. Methods for non-invasive prenatal ploidy calling
US11408031B2 (en) 2010-05-18 2022-08-09 Natera, Inc. Methods for non-invasive prenatal paternity testing
US11332785B2 (en) 2010-05-18 2022-05-17 Natera, Inc. Methods for non-invasive prenatal ploidy calling
US9677118B2 (en) 2014-04-21 2017-06-13 Natera, Inc. Methods for simultaneous amplification of target loci
US10316362B2 (en) 2010-05-18 2019-06-11 Natera, Inc. Methods for simultaneous amplification of target loci
ES2770342T3 (es) 2010-12-22 2020-07-01 Natera Inc Procedimientos para pruebas prenatales no invasivas de paternidad
CA2824387C (en) 2011-02-09 2019-09-24 Natera, Inc. Methods for non-invasive prenatal ploidy calling
CN103717751A (zh) 2011-05-19 2014-04-09 塞昆纳姆股份有限公司 用于多重核酸鉴定的产品和方法
RU2650790C2 (ru) * 2012-07-24 2018-04-17 Натера, Инк. Способы и композиции для высокомультиплексной пцр
US10262755B2 (en) 2014-04-21 2019-04-16 Natera, Inc. Detecting cancer mutations and aneuploidy in chromosomal segments
US9499870B2 (en) 2013-09-27 2016-11-22 Natera, Inc. Cell free DNA diagnostic testing standards
US10577655B2 (en) 2013-09-27 2020-03-03 Natera, Inc. Cell free DNA diagnostic testing standards
WO2015164432A1 (en) * 2014-04-21 2015-10-29 Natera, Inc. Detecting mutations and ploidy in chromosomal segments
RU2717641C2 (ru) 2014-04-21 2020-03-24 Натера, Инк. Обнаружение мутаций и плоидности в хромосомных сегментах
EP3224376B2 (en) 2014-11-28 2023-04-26 uniQure IP B.V. Dna impurities in a composition comprising a parvoviral virion
US20170349926A1 (en) * 2014-12-22 2017-12-07 DNAe Group Holdings LTD. Bubble primers
WO2016172571A1 (en) 2015-04-24 2016-10-27 Agena Bioscience, Inc. Multiplexed method for the identification and quantitation of minor alleles and polymorphisms
WO2016183106A1 (en) * 2015-05-11 2016-11-17 Natera, Inc. Methods and compositions for determining ploidy
GB2539675B (en) * 2015-06-23 2017-11-22 Cs Genetics Ltd Libraries of multimeric barcoding reagents and kits thereof for labelling nucleic acids for sequencing
JP2018530536A (ja) 2015-09-11 2018-10-18 ザ ジェネラル ホスピタル コーポレイション ヌクレアーゼDSBの完全照合およびシーケンシング(FIND−seq)
ES2874275T3 (es) * 2016-02-25 2021-11-04 Hoffmann La Roche Eliminación de las interacciones cebador-cebador durante la extensión del cebador
AU2017249594B2 (en) * 2016-04-15 2023-08-24 Natera, Inc. Methods for lung cancer detection
MX2019001276A (es) * 2016-07-29 2019-06-13 Univ California Viriones de virus adenoasociados con cápside variante y métodos para su uso.
CN109790587B (zh) * 2016-09-30 2023-06-13 富士胶片株式会社 从100pg以下的人类基因组DNA判别其来源的方法、识别个人的方法及分析造血干细胞的植活程度的方法
US11485996B2 (en) 2016-10-04 2022-11-01 Natera, Inc. Methods for characterizing copy number variation using proximity-litigation sequencing
US10011870B2 (en) 2016-12-07 2018-07-03 Natera, Inc. Compositions and methods for identifying nucleic acid molecules
EP3585889A1 (en) 2017-02-21 2020-01-01 Natera, Inc. Compositions, methods, and kits for isolating nucleic acids
WO2019010456A1 (en) * 2017-07-07 2019-01-10 Stephen Quake NON-INVASIVE PRENATAL DIAGNOSIS OF SINGLE GENE DISORDERS USING DIGITAL DROPLET PCR
KR101977976B1 (ko) * 2017-08-10 2019-05-14 주식회사 엔젠바이오 앰플리콘 기반 차세대 염기서열 분석기법에서 프라이머 서열을 제거하여 분석의 정확도를 높이는 방법
JP2020532967A (ja) 2017-08-23 2020-11-19 ザ ジェネラル ホスピタル コーポレイション 変更されたPAM特異性を有する遺伝子操作されたCRISPR−Cas9ヌクレアーゼ
EP3694993A4 (en) * 2017-10-11 2021-10-13 The General Hospital Corporation METHOD OF DETECTING A SITE-SPECIFIC AND UNDESIRED GENOMIC DESAMINATION INDUCED BY BASE EDITING TECHNOLOGIES
CN108334745B (zh) * 2018-03-19 2022-02-08 青岛理工大学 一种聚合酶链反应过程非线性混杂系统建模方法
WO2019204378A1 (en) 2018-04-17 2019-10-24 The General Hospital Corporation Sensitive in vitro assays for substrate preferences and sites of nucleic acid binding, modifying, and cleaving agents
US11525159B2 (en) 2018-07-03 2022-12-13 Natera, Inc. Methods for detection of donor-derived cell-free DNA
CA3107376A1 (en) 2018-08-08 2020-02-13 Inivata Ltd. Method of sequencing using variable replicate multiplex pcr
CN112080558B (zh) * 2019-06-13 2024-03-12 杭州贝瑞和康基因诊断技术有限公司 同时检测hba1/2和hbb基因突变的试剂盒和方法
WO2021016402A1 (en) * 2019-07-22 2021-01-28 Mission Bio, Inc. Using machine learning to optimize assays for single cell targeted dna sequencing
EP4077719A1 (en) * 2019-12-16 2022-10-26 Agilent Technologies, Inc. Genomic scarring assays and related methods
JP7320468B2 (ja) 2020-03-10 2023-08-03 Ntn株式会社 操舵機能付ハブユニットおよびこれを備えた車両
CN113979895B (zh) * 2020-07-08 2023-03-24 中国科学技术大学 一种精确序列可控的自降解聚合物及其制备方法和应用
WO2022076574A1 (en) * 2020-10-08 2022-04-14 Claret Bioscience, Llc Methods and compositions for analyzing nucleic acid
EP4292825A1 (en) 2021-03-18 2023-12-20 Canon Kabushiki Kaisha Liquid injection method, liquid injection device, and liquid cartridge
CA3230790A1 (en) 2021-09-01 2023-03-09 Natera, Inc. Methods for non-invasive prenatal testing

Family Cites Families (40)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US300235A (en) 1884-06-10 Chaeles b
US6479235B1 (en) * 1994-09-30 2002-11-12 Promega Corporation Multiplex amplification of short tandem repeat loci
US6251604B1 (en) * 1999-08-13 2001-06-26 Genopsys, Inc. Random mutagenesis and amplification of nucleic acid
AU2001238068A1 (en) * 2000-02-07 2001-08-14 Illumina, Inc. Nucleic acid detection methods using universal priming
US7582420B2 (en) * 2001-07-12 2009-09-01 Illumina, Inc. Multiplex nucleic acid reactions
CA2409774A1 (en) * 2000-05-23 2001-11-29 Variagenics, Inc. Methods for genetic analysis of dna to detect sequence variances
US6977162B2 (en) 2002-03-01 2005-12-20 Ravgen, Inc. Rapid analysis of variations in a genome
DE602004024034D1 (de) * 2003-01-29 2009-12-24 454 Corp Nukleinsäureamplifikation auf basis von kügelchenemulsion
CN1496413A (zh) * 2003-05-09 2004-05-12 清华大学 用于多重pcr条件优化的方法和组分
WO2005071078A1 (en) * 2004-01-12 2005-08-04 Nimblegen Systems Inc. Method of performing pcr amplification on a microarray
US7618777B2 (en) * 2005-03-16 2009-11-17 Agilent Technologies, Inc. Composition and method for array hybridization
US8515679B2 (en) 2005-12-06 2013-08-20 Natera, Inc. System and method for cleaning noisy genetic data and determining chromosome copy number
US8532930B2 (en) 2005-11-26 2013-09-10 Natera, Inc. Method for determining the number of copies of a chromosome in the genome of a target individual using genetic data from genetically related individuals
EP3591068A1 (en) 2006-02-02 2020-01-08 The Board of Trustees of the Leland Stanford Junior University Non-invasive fetal genetic screening by digital analysis
WO2007111937A1 (en) * 2006-03-23 2007-10-04 Applera Corporation Directed enrichment of genomic dna for high-throughput sequencing
JP2008125471A (ja) 2006-11-22 2008-06-05 Olympus Corp マルチプレックスな核酸増幅方法
WO2008088236A1 (ru) * 2007-01-17 2008-07-24 Uchrezhdenie Rossiiskoi Akademii Nauk Institut Molekulyarnoi Biologii Im. V.A. Engeldardta (Imb Ran ) Способ генетической идентификации личности на основе анализа однонуклеотидного полиморфизма генома человека с использованием олигонуклеотидного биологического микрочипа (биочипа)
EP2121983A2 (en) * 2007-02-02 2009-11-25 Illumina Cambridge Limited Methods for indexing samples and sequencing multiple nucleotide templates
US20090023190A1 (en) 2007-06-20 2009-01-22 Kai Qin Lao Sequence amplification with loopable primers
WO2009032779A2 (en) * 2007-08-29 2009-03-12 Sequenom, Inc. Methods and compositions for the size-specific seperation of nucleic acid from a sample
FR2925480B1 (fr) 2007-12-21 2011-07-01 Gervais Danone Sa Procede d'enrichissement d'une eau en oxygene par voie electrolytique, eau ou boisson enrichie en oxygene et utilisations
EP2077337A1 (en) 2007-12-26 2009-07-08 Eppendorf Array Technologies SA Amplification and detection composition, method and kit
US20110033862A1 (en) 2008-02-19 2011-02-10 Gene Security Network, Inc. Methods for cell genotyping
US20110092763A1 (en) 2008-05-27 2011-04-21 Gene Security Network, Inc. Methods for Embryo Characterization and Comparison
CA2731991C (en) 2008-08-04 2021-06-08 Gene Security Network, Inc. Methods for allele calling and ploidy calling
CA3069081C (en) 2008-09-20 2023-05-23 The Board Of Trustees Of The Leland Stanford Junior University Noninvasive diagnosis of fetal aneuploidy by sequencing
ES2640776T3 (es) 2009-09-30 2017-11-06 Natera, Inc. Métodos para denominar de forma no invasiva ploidía prenatal
PT2496720T (pt) * 2009-11-06 2020-10-12 Univ Leland Stanford Junior Diagnóstico não-invasivo de rejeição de enxertos em pacientes sujeitos a transplantes de órgãos
US20110312503A1 (en) * 2010-01-23 2011-12-22 Artemis Health, Inc. Methods of fetal abnormality detection
US8574832B2 (en) * 2010-02-03 2013-11-05 Massachusetts Institute Of Technology Methods for preparing sequencing libraries
AU2011255641A1 (en) 2010-05-18 2012-12-06 Natera, Inc. Methods for non-invasive prenatal ploidy calling
WO2013052557A2 (en) 2011-10-03 2013-04-11 Natera, Inc. Methods for preimplantation genetic diagnosis by sequencing
EP2426217A1 (en) * 2010-09-03 2012-03-07 Centre National de la Recherche Scientifique (CNRS) Analytical methods for cell free nucleic acids and applications
WO2012078792A2 (en) 2010-12-07 2012-06-14 Stanford University Non-invasive determination of fetal inheritance of parental haplotypes at the genome-wide scale
JP5907990B2 (ja) * 2010-12-17 2016-05-11 ライフ テクノロジーズ コーポレーション 核酸増幅のための方法、組成物、システム、装置およびキット
ES2770342T3 (es) * 2010-12-22 2020-07-01 Natera Inc Procedimientos para pruebas prenatales no invasivas de paternidad
KR20230141927A (ko) * 2010-12-30 2023-10-10 파운데이션 메디신 인코포레이티드 종양 샘플의 다유전자 분석의 최적화
US20120190021A1 (en) 2011-01-25 2012-07-26 Aria Diagnostics, Inc. Detection of genetic abnormalities
CA2824387C (en) 2011-02-09 2019-09-24 Natera, Inc. Methods for non-invasive prenatal ploidy calling
RU2650790C2 (ru) 2012-07-24 2018-04-17 Натера, Инк. Способы и композиции для высокомультиплексной пцр

Also Published As

Publication number Publication date
JP6997813B2 (ja) 2022-02-10
JP2020054401A (ja) 2020-04-09
JP6997814B2 (ja) 2022-02-10
AU2012385961A1 (en) 2015-02-12
JP2020058388A (ja) 2020-04-16
JP2018183189A (ja) 2018-11-22
JP6916153B2 (ja) 2021-08-11
RU2014152883A (ru) 2016-09-10
KR101890466B1 (ko) 2018-08-21
JP6997815B2 (ja) 2022-02-10
RU2650790C2 (ru) 2018-04-17
JP7343563B2 (ja) 2023-09-12
CA2877493A1 (en) 2014-01-30
JP2022037145A (ja) 2022-03-08
JP7027468B2 (ja) 2022-03-01
JP7348330B2 (ja) 2023-09-20
KR20150038216A (ko) 2015-04-08
WO2014018080A1 (en) 2014-01-30
JP2015526073A (ja) 2015-09-10
JP2020054402A (ja) 2020-04-09
CN104685064A (zh) 2015-06-03
CA2877493C (en) 2020-08-25
AU2012385961B2 (en) 2017-04-13
AU2012385961B9 (en) 2017-05-18
JP2020054400A (ja) 2020-04-09
JP2022051949A (ja) 2022-04-01
JP2022027975A (ja) 2022-02-14
JP6392222B2 (ja) 2018-09-19
JP2022027971A (ja) 2022-02-14
HK1211058A1 (en) 2016-05-13
IL236435A0 (en) 2015-02-26

Similar Documents

Publication Publication Date Title
HK1211058A1 (en) Highly multiplex pcr methods and compositions pcr
EP2836212A4 (en) NOVEL COMPOSITIONS AND METHOD
SG10201800645WA (en) Extreme pcr
ZA201408594B (en) Xylitol-based anti-mucosal compositions and related methods and compositions
PL3260558T3 (pl) Nowe kompozycje i sposoby poprawy specyficzności pcr
AP2014008084A0 (en) Compositions comprising shortacting benzodiazepines
HK1206627A1 (en) Compositions and methods for inhibiting viral polymerase
HK1216250A1 (zh) '- '-羥基-二氫麥角胺化合物及組合物
EP2854530A4 (en) COMPOSITIONS AND METHODS FOR BETA-GLUCAN IMMUNOTHERAPY
GB201217441D0 (en) Composition
GB201200707D0 (en) Composition
GB201315350D0 (en) Methods and compositions
GB201315347D0 (en) Methods and compositions
EP2874641A4 (en) COMPOSITIONS INCREASING THE GLUTATHION RATE AND USES THEREOF
EP2878295A4 (en) COMPOSITION
EP2931280A4 (en) METHOD AND COMPOSITIONS FOR INHIBITING CNKSR1
EP2837670A4 (en) COMPOSITION CONTAINING FLUOROBIPHENYL
GB201206035D0 (en) Composition
HRP20190033T1 (hr) Pripravak
EP2910537A4 (en) AGENT COMPOSITION GENERATING GAS
EP2910538A4 (en) AGENT COMPOSITION GENERATING GAS
GB201209597D0 (en) Composition
GB201208133D0 (en) Composition
HK1208504A1 (en) Highly multiplex pcr methods and compositions pcr
PL2830587T3 (pl) Kompozycja o balansującym i ochronnym wpływie na skórę