RU2636460C2 - Системы и способы применения зависящего от вращения транскрипционного секвенирования - Google Patents
Системы и способы применения зависящего от вращения транскрипционного секвенирования Download PDFInfo
- Publication number
- RU2636460C2 RU2636460C2 RU2013142965A RU2013142965A RU2636460C2 RU 2636460 C2 RU2636460 C2 RU 2636460C2 RU 2013142965 A RU2013142965 A RU 2013142965A RU 2013142965 A RU2013142965 A RU 2013142965A RU 2636460 C2 RU2636460 C2 RU 2636460C2
- Authority
- RU
- Russia
- Prior art keywords
- nucleic acid
- rna polymerase
- interest
- sequencing
- rotation
- Prior art date
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
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- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Immunology (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Saccharide Compounds (AREA)
- Pyrane Compounds (AREA)
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161463850P | 2011-02-23 | 2011-02-23 | |
| US61/463,850 | 2011-02-23 | ||
| US201161574270P | 2011-07-30 | 2011-07-30 | |
| US61/574,270 | 2011-07-30 | ||
| PCT/US2012/026339 WO2012116191A1 (en) | 2011-02-23 | 2012-02-23 | Rotation-dependent transcriptional sequencing systems and methods of using |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| RU2013142965A RU2013142965A (ru) | 2015-03-27 |
| RU2636460C2 true RU2636460C2 (ru) | 2017-11-23 |
Family
ID=45852700
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| RU2013142965A RU2636460C2 (ru) | 2011-02-23 | 2012-02-23 | Системы и способы применения зависящего от вращения транскрипционного секвенирования |
Country Status (9)
| Country | Link |
|---|---|
| US (2) | US8574840B2 (cg-RX-API-DMAC10.html) |
| EP (1) | EP2678444B1 (cg-RX-API-DMAC10.html) |
| JP (1) | JP6018092B2 (cg-RX-API-DMAC10.html) |
| KR (1) | KR101924665B1 (cg-RX-API-DMAC10.html) |
| CN (1) | CN103534357B (cg-RX-API-DMAC10.html) |
| AU (1) | AU2012220546B2 (cg-RX-API-DMAC10.html) |
| CA (1) | CA2827880A1 (cg-RX-API-DMAC10.html) |
| RU (1) | RU2636460C2 (cg-RX-API-DMAC10.html) |
| WO (1) | WO2012116191A1 (cg-RX-API-DMAC10.html) |
Families Citing this family (29)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US8775454B2 (en) | 2008-07-29 | 2014-07-08 | James L. Geer | Phone assisted ‘photographic memory’ |
| US9128981B1 (en) | 2008-07-29 | 2015-09-08 | James L. Geer | Phone assisted ‘photographic memory’ |
| RU2636460C2 (ru) | 2011-02-23 | 2017-11-23 | Ив Байомедикал, Инк. | Системы и способы применения зависящего от вращения транскрипционного секвенирования |
| AU2014218911B2 (en) * | 2013-02-20 | 2018-07-12 | Eve Biomedical, Inc. | Methods and compositions for nanostructure-based nucleic acid sequencing |
| US20160309068A1 (en) * | 2014-01-06 | 2016-10-20 | The Regents Of The University Of California | Spatial frequency domain imaging using custom patterns |
| US10605766B2 (en) | 2014-07-15 | 2020-03-31 | Illumina, Inc. | Biochemically activated electronic device |
| WO2016174271A1 (en) * | 2015-04-30 | 2016-11-03 | Curevac Ag | Immobilized poly(n)polymerase |
| CN106991224A (zh) * | 2017-03-27 | 2017-07-28 | 蔡彤� | 一种芯片引线键合定位的建模方法及系统 |
| US11499962B2 (en) | 2017-11-17 | 2022-11-15 | Ultima Genomics, Inc. | Methods and systems for analyte detection and analysis |
| US10267790B1 (en) | 2017-11-17 | 2019-04-23 | Ultima Genomics, Inc. | Systems for biological sample processing and analysis |
| US10885772B2 (en) * | 2017-12-21 | 2021-01-05 | Lumileds Llc | Road lighting |
| US11798406B2 (en) * | 2018-03-21 | 2023-10-24 | Lumileds Llc | Road lighting |
| US10704094B1 (en) | 2018-11-14 | 2020-07-07 | Element Biosciences, Inc. | Multipart reagents having increased avidity for polymerase binding |
| US10512911B1 (en) | 2018-12-07 | 2019-12-24 | Ultima Genomics, Inc. | Implementing barriers for controlled environments during sample processing and detection |
| US12239980B2 (en) | 2018-12-07 | 2025-03-04 | Ultima Genomics, Inc. | Implementing barriers for controlled environments during sample processing and detection |
| US10852518B1 (en) | 2019-03-14 | 2020-12-01 | Ultima Genomics, Inc. | Methods, devices, and systems for analyte detection and analysis |
| US10830703B1 (en) | 2019-03-14 | 2020-11-10 | Ultima Genomics, Inc. | Methods, devices, and systems for analyte detection and analysis |
| US10900078B2 (en) | 2019-03-14 | 2021-01-26 | Ultima Genomics, Inc. | Methods, devices, and systems for analyte detection and analysis |
| US11118223B2 (en) | 2019-03-14 | 2021-09-14 | Ultima Genomics, Inc. | Methods, devices, and systems for analyte detection and analysis |
| WO2020210370A1 (en) * | 2019-04-12 | 2020-10-15 | Roche Sequencing Solutions, Inc. | Nucleic acid sequencing by synthesis using magnetic sensor arrays |
| US11327073B2 (en) | 2019-04-12 | 2022-05-10 | Western Digital Technologies, Inc. | Thermal sensor array for molecule detection and related detection schemes |
| US11609208B2 (en) | 2019-04-12 | 2023-03-21 | Western Digital Technologies, Inc. | Devices and methods for molecule detection based on thermal stabilities of magnetic nanoparticles |
| US11112468B2 (en) | 2019-04-12 | 2021-09-07 | Western Digital Technologies, Inc. | Magnetoresistive sensor array for molecule detection and related detection schemes |
| CN110376171B (zh) * | 2019-07-15 | 2021-11-19 | 上海理工大学 | 应用于dPCR检测仪的透射式荧光检测成像系统 |
| US11208682B2 (en) | 2019-09-13 | 2021-12-28 | Western Digital Technologies, Inc. | Enhanced optical detection for nucleic acid sequencing using thermally-dependent fluorophore tags |
| US11408032B2 (en) * | 2020-01-17 | 2022-08-09 | Element Biosciences, Inc. | Tube lens design for improved depth-of-field |
| WO2022084748A1 (en) * | 2020-10-23 | 2022-04-28 | Spindle Biotech, Inc. | Compositions and methods for rna synthesis |
| CN119061125A (zh) | 2021-07-21 | 2024-12-03 | 元素生物科学公司 | 用于核酸测序的方法 |
| EP4627115A1 (en) | 2022-11-29 | 2025-10-08 | Element Biosciences, Inc. | Flow cell devices and optical systems for nucleic acid sequencing |
Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2143004C1 (ru) * | 1993-09-27 | 1999-12-20 | АРЧ Девелопмент Корпорейшн | Способ определения последовательности нуклеиновой кислоты (варианты) и набор для использования при определении последовательности нуклеиновой кислоты |
| US6872816B1 (en) * | 1996-01-24 | 2005-03-29 | Third Wave Technologies, Inc. | Nucleic acid detection kits |
| US20070077575A1 (en) * | 2004-03-05 | 2007-04-05 | Mcallister William T | Use of rna polymerase as an information-dependent molecular motor |
| US20110008794A1 (en) * | 1999-08-30 | 2011-01-13 | The Government of USA represented by the Secretary of the Dept. of Health and Human Services | High speed parallel molecular nucleic acid sequencing |
Family Cites Families (9)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5693489A (en) | 1984-03-30 | 1997-12-02 | Associated Universities, Inc. | Cloning and expression of the gene for bacteriophage T7 RNA polymerase |
| WO2000036152A1 (en) * | 1998-12-14 | 2000-06-22 | Li-Cor, Inc. | A system and methods for nucleic acid sequencing of single molecules by polymerase synthesis |
| US6529240B2 (en) * | 1999-11-18 | 2003-03-04 | Agilent Technologies, Inc. | Random access memory integrated with CMOS sensors |
| US6548264B1 (en) * | 2000-05-17 | 2003-04-15 | University Of Florida | Coated nanoparticles |
| WO2005098038A2 (en) | 2004-03-05 | 2005-10-20 | Research Foundation Of State University Of New York | Use of rna polymerase as an information-dependent molecular motor |
| US7556922B2 (en) * | 2006-03-23 | 2009-07-07 | The Board Of Trustees Of The Leland Stanford Junior University | Motion resolved molecular sequencing |
| WO2009073201A2 (en) * | 2007-12-04 | 2009-06-11 | Pacific Biosciences Of California, Inc. | Alternate labeling strategies for single molecule sequencing |
| US8815576B2 (en) * | 2007-12-27 | 2014-08-26 | Lawrence Livermore National Security, Llc. | Chip-based sequencing nucleic acids |
| RU2636460C2 (ru) | 2011-02-23 | 2017-11-23 | Ив Байомедикал, Инк. | Системы и способы применения зависящего от вращения транскрипционного секвенирования |
-
2012
- 2012-02-23 RU RU2013142965A patent/RU2636460C2/ru not_active IP Right Cessation
- 2012-02-23 WO PCT/US2012/026339 patent/WO2012116191A1/en not_active Ceased
- 2012-02-23 EP EP12709419.1A patent/EP2678444B1/en not_active Not-in-force
- 2012-02-23 KR KR1020137024640A patent/KR101924665B1/ko not_active Expired - Fee Related
- 2012-02-23 JP JP2013555562A patent/JP6018092B2/ja not_active Expired - Fee Related
- 2012-02-23 US US13/403,645 patent/US8574840B2/en not_active Expired - Fee Related
- 2012-02-23 CA CA2827880A patent/CA2827880A1/en not_active Abandoned
- 2012-02-23 CN CN201280019968.8A patent/CN103534357B/zh not_active Expired - Fee Related
- 2012-02-23 AU AU2012220546A patent/AU2012220546B2/en not_active Ceased
-
2013
- 2013-11-04 US US14/070,904 patent/US9657343B2/en not_active Expired - Fee Related
Patent Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2143004C1 (ru) * | 1993-09-27 | 1999-12-20 | АРЧ Девелопмент Корпорейшн | Способ определения последовательности нуклеиновой кислоты (варианты) и набор для использования при определении последовательности нуклеиновой кислоты |
| US6872816B1 (en) * | 1996-01-24 | 2005-03-29 | Third Wave Technologies, Inc. | Nucleic acid detection kits |
| US20110008794A1 (en) * | 1999-08-30 | 2011-01-13 | The Government of USA represented by the Secretary of the Dept. of Health and Human Services | High speed parallel molecular nucleic acid sequencing |
| US20070077575A1 (en) * | 2004-03-05 | 2007-04-05 | Mcallister William T | Use of rna polymerase as an information-dependent molecular motor |
Non-Patent Citations (1)
| Title |
|---|
| WESTOVER KD, et al., Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center, Cell, 2004, 119 (4), pp.481-489. ДМИТРИЕНКО Е.В., и др., Гибридизационный анализ нуклеиновых кислот с помощью олигонуклеотидных производных. II. Изотермическая амплификация сигнала при анализе ДНК методоом мини-секвенирования, Биоорганическая химия, 2010, том 36, No.6, с.802-814. * |
Also Published As
| Publication number | Publication date |
|---|---|
| US8574840B2 (en) | 2013-11-05 |
| KR101924665B1 (ko) | 2018-12-03 |
| AU2012220546B2 (en) | 2017-02-23 |
| CN103534357A (zh) | 2014-01-22 |
| RU2013142965A (ru) | 2015-03-27 |
| US20140162275A1 (en) | 2014-06-12 |
| EP2678444A1 (en) | 2014-01-01 |
| WO2012116191A1 (en) | 2012-08-30 |
| US20120214171A1 (en) | 2012-08-23 |
| CN103534357B (zh) | 2016-05-18 |
| KR20140089308A (ko) | 2014-07-14 |
| AU2012220546A1 (en) | 2013-09-12 |
| CA2827880A1 (en) | 2012-08-30 |
| HK1187959A1 (zh) | 2014-04-17 |
| JP2014506485A (ja) | 2014-03-17 |
| JP6018092B2 (ja) | 2016-11-02 |
| US9657343B2 (en) | 2017-05-23 |
| EP2678444B1 (en) | 2016-02-17 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| MM4A | The patent is invalid due to non-payment of fees |
Effective date: 20180224 |