PL3443115T3 - Sposób i zestaw do generowania bibliotek DNA do masywnego równoległego sekwencjonowania - Google Patents
Sposób i zestaw do generowania bibliotek DNA do masywnego równoległego sekwencjonowaniaInfo
- Publication number
- PL3443115T3 PL3443115T3 PL17718883.6T PL17718883T PL3443115T3 PL 3443115 T3 PL3443115 T3 PL 3443115T3 PL 17718883 T PL17718883 T PL 17718883T PL 3443115 T3 PL3443115 T3 PL 3443115T3
- Authority
- PL
- Poland
- Prior art keywords
- kit
- massively parallel
- dna libraries
- parallel sequencing
- generating dna
- Prior art date
Links
- 238000000034 method Methods 0.000 title 1
- 238000012163 sequencing technique Methods 0.000 title 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1082—Preparation or screening gene libraries by chromosomal integration of polynucleotide sequences, HR-, site-specific-recombination, transposons, viral vectors
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
- C12Q1/6855—Ligating adaptors
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/155—Modifications characterised by incorporating/generating a new priming site
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/191—Modifications characterised by incorporating an adaptor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
- C12Q2535/122—Massive parallel sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/143—Magnetism, e.g. magnetic label
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/149—Particles, e.g. beads
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Microbiology (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Immunology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Biomedical Technology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Virology (AREA)
- Plant Pathology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| ITUA2016A002640A ITUA20162640A1 (it) | 2016-04-15 | 2016-04-15 | Metodo e kit per la generazione di librerie di dna per sequenziamento massivo parallelo |
| PCT/EP2017/059075 WO2017178655A1 (en) | 2016-04-15 | 2017-04-14 | Method and kit for the generation of dna libraries for massively parallel sequencing |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| PL3443115T3 true PL3443115T3 (pl) | 2025-02-10 |
Family
ID=56853703
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PL17718883.6T PL3443115T3 (pl) | 2016-04-15 | 2017-04-14 | Sposób i zestaw do generowania bibliotek DNA do masywnego równoległego sekwencjonowania |
Country Status (11)
| Country | Link |
|---|---|
| US (2) | US20200299680A1 (pl) |
| EP (1) | EP3443115B1 (pl) |
| JP (1) | JP6899844B2 (pl) |
| KR (1) | KR102354422B1 (pl) |
| CN (1) | CN109477245A (pl) |
| CA (1) | CA3019714A1 (pl) |
| ES (1) | ES2998543T3 (pl) |
| IT (1) | ITUA20162640A1 (pl) |
| PL (1) | PL3443115T3 (pl) |
| SG (2) | SG11201808675VA (pl) |
| WO (1) | WO2017178655A1 (pl) |
Families Citing this family (12)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP3431611A1 (en) * | 2017-07-21 | 2019-01-23 | Menarini Silicon Biosystems S.p.A. | Improved method and kit for the generation of dna libraries for massively parallel sequencing |
| CN108866155B (zh) * | 2018-06-11 | 2022-07-26 | 中国农业科学院深圳农业基因组研究所 | 一种下一代测序文库的制备方法 |
| IT201900013335A1 (it) | 2019-07-30 | 2021-01-30 | Menarini Silicon Biosystems Spa | Metodo per analizzare la perdita di eterozigosi (loh) a seguito di amplificazione totale del genoma basata su un sito di restrizione deterministico (drs-wga) |
| CN112662748B (zh) * | 2019-10-15 | 2023-02-17 | 骏实生物科技(上海)有限公司 | 用于单细胞dna测序文库质量鉴定的引物对组合、方法和试剂盒 |
| IT201900024159A1 (it) | 2019-12-16 | 2021-06-16 | Menarini Silicon Biosystems Spa | Metodo e kit per amplificazione totale del genoma e analisi di molecole bersaglio in un campione biologico |
| CN111005074A (zh) * | 2019-12-19 | 2020-04-14 | 江西海普洛斯医学检验实验室有限公司 | 一种基于illumina测序平台的DNA文库构建试剂盒、文库构建方法和应用 |
| MX2022014724A (es) * | 2020-09-14 | 2023-03-06 | Illumina Inc | Composiciones y metodos para amplificar polinucleótidos. |
| CN112592968B (zh) * | 2020-12-27 | 2022-07-26 | 苏州科诺医学检验实验室有限公司 | 高通量测序用分子标签接头及其合成方法与应用 |
| IT202100024101A1 (it) | 2021-09-20 | 2023-03-20 | Menarini Silicon Biosystems Spa | Metodo per analizzare il grado di similarita' di almeno due campioni utilizzando amplificazione deterministica dell'intero genoma mediante siti di restrizione (drs-wga) |
| WO2025136785A1 (en) * | 2023-12-21 | 2025-06-26 | Illumina, Inc. | Method for managing multiple parallel library preparation workflows with shared resources |
| CN117721191B (zh) * | 2024-02-07 | 2024-05-10 | 深圳赛陆医疗科技有限公司 | 基因测序方法、测序装置、可读存储介质和基因测序系统 |
| WO2026083244A1 (en) | 2024-10-14 | 2026-04-23 | Menarini Silicon Biosystems S.P.A. | Method for analysing the copy-number profile of a sample using deterministic restriction-site whole genome amplification (drs-wga) |
Family Cites Families (15)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DK1109938T3 (da) * | 1998-09-18 | 2002-05-27 | Micromet Ag | DNA-amplificering af en enkelt celle |
| DE602004026033D1 (de) * | 2003-01-29 | 2010-04-29 | 454 Corp | Zweiendige sequenzierung |
| US8206913B1 (en) * | 2003-03-07 | 2012-06-26 | Rubicon Genomics, Inc. | Amplification and analysis of whole genome and whole transcriptome libraries generated by a DNA polymerization process |
| US20040209299A1 (en) * | 2003-03-07 | 2004-10-21 | Rubicon Genomics, Inc. | In vitro DNA immortalization and whole genome amplification using libraries generated from randomly fragmented DNA |
| ES2882401T3 (es) * | 2005-12-22 | 2021-12-01 | Keygene Nv | Método de detección de polimorfismos basado en AFLP de alto rendimiento |
| ES2528971T3 (es) * | 2008-03-17 | 2015-02-13 | Stichting Genetwister Ip | Descubrimientos de genes vinculados a la expresión |
| CN102559856B (zh) * | 2010-12-22 | 2014-03-12 | 深圳华大基因科技服务有限公司 | 去除测序文库中的载体片段的方法 |
| PL2893040T3 (pl) * | 2012-09-04 | 2019-05-31 | Guardant Health Inc | Sposoby wykrywania rzadkich mutacji i wariantu liczby kopii |
| ITTO20120962A1 (it) | 2012-10-31 | 2014-05-01 | Silicon Biosystems Spa | Metodo e kit per rivelare una sequenza di dna bersaglio wild-type e/o mutata |
| EP2914745B1 (en) * | 2012-11-05 | 2017-09-06 | Rubicon Genomics, Inc. | Barcoding nucleic acids |
| US20150275285A1 (en) * | 2012-12-03 | 2015-10-01 | Yilin Zhang | Compositions and methods of nucleic acid preparation and analyses |
| WO2014138153A1 (en) * | 2013-03-06 | 2014-09-12 | Life Technologies Corporation | Systems and methods for determining copy number variation |
| PT2881739T (pt) * | 2013-12-04 | 2017-08-11 | Fraunhofer Ges Forschung | Método e estojo para determinação da integridade do genoma e/ou da qualidade de uma biblioteca de sequências de adn obtida através de amplificação determinística do genoma inteiro por locais de restrição |
| EP3122894A4 (en) * | 2014-03-28 | 2017-11-08 | GE Healthcare Bio-Sciences Corp. | Accurate detection of rare genetic variants in next generation sequencing |
| US10301671B2 (en) * | 2014-05-06 | 2019-05-28 | Baylor College Of Medicine | Methods of linearly amplifying whole genome of a single cell |
-
2016
- 2016-04-15 IT ITUA2016A002640A patent/ITUA20162640A1/it unknown
-
2017
- 2017-04-14 CN CN201780023862.8A patent/CN109477245A/zh active Pending
- 2017-04-14 JP JP2018553460A patent/JP6899844B2/ja active Active
- 2017-04-14 US US16/092,570 patent/US20200299680A1/en not_active Abandoned
- 2017-04-14 KR KR1020187032227A patent/KR102354422B1/ko active Active
- 2017-04-14 SG SG11201808675VA patent/SG11201808675VA/en unknown
- 2017-04-14 SG SG10202010198VA patent/SG10202010198VA/en unknown
- 2017-04-14 ES ES17718883T patent/ES2998543T3/es active Active
- 2017-04-14 PL PL17718883.6T patent/PL3443115T3/pl unknown
- 2017-04-14 CA CA3019714A patent/CA3019714A1/en active Pending
- 2017-04-14 EP EP17718883.6A patent/EP3443115B1/en active Active
- 2017-04-14 WO PCT/EP2017/059075 patent/WO2017178655A1/en not_active Ceased
-
2022
- 2022-10-14 US US17/966,011 patent/US20230250419A1/en active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| KR102354422B1 (ko) | 2022-01-21 |
| EP3443115C0 (en) | 2024-10-09 |
| ITUA20162640A1 (it) | 2017-10-15 |
| SG11201808675VA (en) | 2018-11-29 |
| CN109477245A (zh) | 2019-03-15 |
| SG10202010198VA (en) | 2020-11-27 |
| WO2017178655A1 (en) | 2017-10-19 |
| JP2019514360A (ja) | 2019-06-06 |
| EP3443115B1 (en) | 2024-10-09 |
| KR20190019049A (ko) | 2019-02-26 |
| JP6899844B2 (ja) | 2021-07-07 |
| CA3019714A1 (en) | 2017-10-19 |
| EP3443115A1 (en) | 2019-02-20 |
| US20200299680A1 (en) | 2020-09-24 |
| US20230250419A1 (en) | 2023-08-10 |
| ES2998543T3 (en) | 2025-02-20 |
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