MX2023004461A - Plantillas de secuenciacion que comprenden multiples insertos y composiciones y metodos para mejorar la productividad de secuenciacion. - Google Patents
Plantillas de secuenciacion que comprenden multiples insertos y composiciones y metodos para mejorar la productividad de secuenciacion.Info
- Publication number
- MX2023004461A MX2023004461A MX2023004461A MX2023004461A MX2023004461A MX 2023004461 A MX2023004461 A MX 2023004461A MX 2023004461 A MX2023004461 A MX 2023004461A MX 2023004461 A MX2023004461 A MX 2023004461A MX 2023004461 A MX2023004461 A MX 2023004461A
- Authority
- MX
- Mexico
- Prior art keywords
- sequencing
- methods
- templates
- compositions
- multiple inserts
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2523/00—Reactions characterised by treatment of reaction samples
- C12Q2523/10—Characterised by chemical treatment
- C12Q2523/101—Crosslinking agents, e.g. psoralen
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
- C12Q2535/122—Massive parallel sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
- C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
- C12Q2537/143—Multiplexing, i.e. use of multiple primers or probes in a single reaction, usually for simultaneously analyse of multiple analysis
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/149—Particles, e.g. beads
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/159—Microreactors, e.g. emulsion PCR or sequencing, droplet PCR, microcapsules, i.e. non-liquid containers with a range of different permeability's for different reaction components
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Immobilizing And Processing Of Enzymes And Microorganisms (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US202063094422P | 2020-10-21 | 2020-10-21 | |
| US202163256040P | 2021-10-15 | 2021-10-15 | |
| PCT/US2021/055878 WO2022087150A2 (en) | 2020-10-21 | 2021-10-20 | Sequencing templates comprising multiple inserts and compositions and methods for improving sequencing throughput |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| MX2023004461A true MX2023004461A (es) | 2023-05-03 |
Family
ID=78622058
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| MX2023004461A MX2023004461A (es) | 2020-10-21 | 2021-10-20 | Plantillas de secuenciacion que comprenden multiples insertos y composiciones y metodos para mejorar la productividad de secuenciacion. |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US20230407388A1 (cg-RX-API-DMAC10.html) |
| EP (1) | EP4232600A2 (cg-RX-API-DMAC10.html) |
| JP (2) | JP7853291B2 (cg-RX-API-DMAC10.html) |
| KR (1) | KR20230091116A (cg-RX-API-DMAC10.html) |
| CN (1) | CN116438319A (cg-RX-API-DMAC10.html) |
| AU (1) | AU2021366658A1 (cg-RX-API-DMAC10.html) |
| CA (1) | CA3198842A1 (cg-RX-API-DMAC10.html) |
| IL (1) | IL302207A (cg-RX-API-DMAC10.html) |
| MX (1) | MX2023004461A (cg-RX-API-DMAC10.html) |
| WO (1) | WO2022087150A2 (cg-RX-API-DMAC10.html) |
Families Citing this family (19)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US11859241B2 (en) | 2021-06-17 | 2024-01-02 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| CA3224352A1 (en) * | 2021-06-17 | 2022-12-22 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| WO2022266470A1 (en) * | 2021-06-17 | 2022-12-22 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| US11220707B1 (en) | 2021-06-17 | 2022-01-11 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| JP2025507763A (ja) * | 2022-03-01 | 2025-03-21 | ガーダント ヘルス， インコーポレイテッド | シトシンのメチル化およびヒドロキシメチル化を分析するための方法 |
| JP2025509651A (ja) | 2022-03-15 | 2025-04-11 | イルミナ インコーポレイテッド | 並行サンプル及びインデックス配列決定 |
| WO2023175040A2 (en) | 2022-03-15 | 2023-09-21 | Illumina, Inc. | Concurrent sequencing of forward and reverse complement strands on concatenated polynucleotides for methylation detection |
| US20250215492A1 (en) * | 2022-05-26 | 2025-07-03 | Illumina, Inc. | Preparation of long read nucleic acid libraries |
| CA3264896A1 (en) | 2022-08-15 | 2024-02-22 | Element Biosciences, Inc. | SPATIAL RESOLUTION SURFACE CAPTURE OF NUCLEIC ACIDS |
| WO2024061799A1 (en) | 2022-09-19 | 2024-03-28 | Illumina, Inc. | Deformable polymers comprising immobilised primers |
| WO2024213788A1 (en) * | 2023-04-13 | 2024-10-17 | Aniling Sl. | Method of dna sequencing |
| EP4728092A1 (en) | 2023-06-14 | 2026-04-22 | Illumina, Inc. | Determination of modified cytosines |
| WO2024256580A1 (en) | 2023-06-14 | 2024-12-19 | Illumina, Inc. | Concurrent sequencing with spatially separated rings |
| EP4780981A1 (en) | 2023-09-20 | 2026-07-29 | Illumina, Inc. | Concurrent sequencing using nick translation |
| WO2025062001A1 (en) | 2023-09-20 | 2025-03-27 | Illumina, Inc. | Optimised nucleic acid sequencing |
| WO2026006746A2 (en) * | 2024-06-28 | 2026-01-02 | Illumina, Inc. | Nucleic acid preparation and analysis techniques |
| WO2026006622A2 (en) * | 2024-06-28 | 2026-01-02 | Illumina, Inc. | Sequencing full-complement polynucleotides using nanopores |
| WO2026097017A2 (en) | 2024-11-01 | 2026-05-07 | Illumina, Inc. | Methods of improving sequencing accuracy |
| WO2026136388A1 (en) * | 2024-12-19 | 2026-06-25 | Illumina, Inc. | Genomic analysis using tagmentation |
Family Cites Families (43)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1991006678A1 (en) | 1989-10-26 | 1991-05-16 | Sri International | Dna sequencing |
| EP2327797B1 (en) | 1997-04-01 | 2015-11-25 | Illumina Cambridge Limited | Method of nucleic acid sequencing |
| AR021833A1 (es) | 1998-09-30 | 2002-08-07 | Applied Research Systems | Metodos de amplificacion y secuenciacion de acido nucleico |
| US7955794B2 (en) | 2000-09-21 | 2011-06-07 | Illumina, Inc. | Multiplex nucleic acid reactions |
| EP2100971A3 (en) | 2000-07-07 | 2009-11-25 | Visigen Biotechnologies, Inc. | Real-time sequence determination |
| US7211414B2 (en) | 2000-12-01 | 2007-05-01 | Visigen Biotechnologies, Inc. | Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity |
| US7057026B2 (en) | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
| AU2003259350A1 (en) | 2002-08-23 | 2004-03-11 | Solexa Limited | Modified nucleotides for polynucleotide sequencing |
| EP2789383B1 (en) | 2004-01-07 | 2023-05-03 | Illumina Cambridge Limited | Molecular arrays |
| US7315019B2 (en) | 2004-09-17 | 2008-01-01 | Pacific Biosciences Of California, Inc. | Arrays of optical confinements and uses thereof |
| GB0427236D0 (en) | 2004-12-13 | 2005-01-12 | Solexa Ltd | Improved method of nucleotide detection |
| US7405281B2 (en) | 2005-09-29 | 2008-07-29 | Pacific Biosciences Of California, Inc. | Fluorescent nucleotide analogs and uses therefor |
| SG170802A1 (en) | 2006-03-31 | 2011-05-30 | Solexa Inc | Systems and devices for sequence by synthesis analysis |
| CA2680532C (en) | 2006-04-18 | 2017-03-21 | Advanced Liquid Logic, Inc. | Droplet-based pyrosequencing |
| EP2089517A4 (en) | 2006-10-23 | 2010-10-20 | Pacific Biosciences California | POLYMERASEENZYME AND REAGENTS FOR ADVANCED NUCKIC ACID SEQUENCING |
| US9080211B2 (en) | 2008-10-24 | 2015-07-14 | Epicentre Technologies Corporation | Transposon end compositions and methods for modifying nucleic acids |
| WO2010127304A2 (en) | 2009-05-01 | 2010-11-04 | Illumina, Inc. | Sequencing methods |
| US8753816B2 (en) | 2010-10-26 | 2014-06-17 | Illumina, Inc. | Sequencing methods |
| US9644199B2 (en) | 2012-10-01 | 2017-05-09 | Agilent Technologies, Inc. | Immobilized transposase complexes for DNA fragmentation and tagging |
| US9683230B2 (en) | 2013-01-09 | 2017-06-20 | Illumina Cambridge Limited | Sample preparation on a solid support |
| CN105358715B (zh) | 2013-07-03 | 2018-09-18 | 伊鲁米那股份有限公司 | 正交合成测序 |
| ES2879823T3 (es) * | 2013-11-22 | 2021-11-23 | Labrador Diagnostics Llc | Amplificación de ácidos nucleicos |
| DK3083994T3 (da) | 2013-12-20 | 2021-09-13 | Illumina Inc | Bevarelse af genomisk konnektivitetsinformation i fragmenterede genomiske DNA-prøver |
| CN106507677B (zh) | 2014-04-15 | 2021-03-12 | 伊鲁米那股份有限公司 | 用于改进插入序列偏倚和增加dna输入耐受性的修饰的转座酶 |
| US10975371B2 (en) | 2014-04-29 | 2021-04-13 | Illumina, Inc. | Nucleic acid sequence analysis from single cells |
| KR20170026383A (ko) | 2014-06-26 | 2017-03-08 | 10엑스 제노믹스, 인크. | 핵산 서열의 분석 |
| BR122021026779B1 (pt) * | 2014-10-17 | 2023-12-19 | Illumina Cambridge Limited | Transposon de preservação de contiguidade |
| CN114045282B (zh) * | 2014-10-17 | 2025-03-07 | 伊卢米纳剑桥有限公司 | 接近性保留性转座 |
| WO2016133764A1 (en) | 2015-02-17 | 2016-08-25 | Complete Genomics, Inc. | Dna sequencing using controlled strand displacement |
| US10844428B2 (en) | 2015-04-28 | 2020-11-24 | Illumina, Inc. | Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS) |
| US11453875B2 (en) | 2015-05-28 | 2022-09-27 | Illumina Cambridge Limited | Surface-based tagmentation |
| IL294145B2 (en) | 2015-07-30 | 2024-02-01 | Illumina Inc | Removal of orthogonal blocking of nucleotides |
| CN114807323A (zh) | 2015-10-09 | 2022-07-29 | 安可济控股有限公司 | 用于富集扩增产物的方法及组合物 |
| WO2018108328A1 (en) * | 2016-12-16 | 2018-06-21 | F. Hoffmann-La Roche Ag | Method for increasing throughput of single molecule sequencing by concatenating short dna fragments |
| CN116497103A (zh) | 2017-01-18 | 2023-07-28 | 伊鲁米那股份有限公司 | 制备测序衔接子的方法和对核酸分子进行测序的方法 |
| KR20250143875A (ko) | 2017-02-21 | 2025-10-02 | 일루미나, 인코포레이티드 | 링커를 갖는 고정된 트랜스포좀을 사용한 태그먼트화 |
| CN119824552A (zh) | 2017-05-01 | 2025-04-15 | 伊鲁米那股份有限公司 | 用于多重大规模平行测序的最佳索引序列 |
| SG11201910070PA (en) | 2017-05-08 | 2019-11-28 | Illumina Inc | Universal short adapters for indexing of polynucleotide samples |
| US20180346963A1 (en) * | 2017-06-01 | 2018-12-06 | Counsyl, Inc. | Preparation of Concatenated Polynucleotides |
| US11447818B2 (en) | 2017-09-15 | 2022-09-20 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
| EP3718113B1 (en) | 2017-11-30 | 2025-07-02 | Illumina, Inc. | Validation methods and systems for sequence variant calls |
| WO2020014437A1 (en) | 2018-07-12 | 2020-01-16 | Levine Alison | Modular apparel |
| JP7268352B2 (ja) | 2018-12-28 | 2023-05-08 | 東洋紡株式会社 | アダプターダイマーの生成抑制方法 |
-
2021
- 2021-10-20 EP EP21807406.0A patent/EP4232600A2/en active Pending
- 2021-10-20 JP JP2023524116A patent/JP7853291B2/ja active Active
- 2021-10-20 CN CN202180071179.8A patent/CN116438319A/zh active Pending
- 2021-10-20 CA CA3198842A patent/CA3198842A1/en active Pending
- 2021-10-20 WO PCT/US2021/055878 patent/WO2022087150A2/en not_active Ceased
- 2021-10-20 IL IL302207A patent/IL302207A/en unknown
- 2021-10-20 KR KR1020237016082A patent/KR20230091116A/ko active Pending
- 2021-10-20 AU AU2021366658A patent/AU2021366658A1/en active Pending
- 2021-10-20 MX MX2023004461A patent/MX2023004461A/es unknown
-
2023
- 2023-04-20 US US18/303,905 patent/US20230407388A1/en active Pending
-
2026
- 2026-04-13 JP JP2026065692A patent/JP2026104930A/ja active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| IL302207A (en) | 2023-06-01 |
| JP2023547366A (ja) | 2023-11-10 |
| CN116438319A (zh) | 2023-07-14 |
| AU2021366658A9 (en) | 2024-05-02 |
| WO2022087150A3 (en) | 2022-06-30 |
| EP4232600A2 (en) | 2023-08-30 |
| WO2022087150A2 (en) | 2022-04-28 |
| KR20230091116A (ko) | 2023-06-22 |
| JP2026104930A (ja) | 2026-06-25 |
| JP7853291B2 (ja) | 2026-04-28 |
| US20230407388A1 (en) | 2023-12-21 |
| CA3198842A1 (en) | 2022-04-28 |
| AU2021366658A1 (en) | 2023-06-22 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| WO2022087150A3 (en) | Sequencing templates comprising multiple inserts and compositions and methods for improving sequencing throughput | |
| Zhou et al. | Towards a higher-level Ensifera phylogeny inferred from mitogenome sequences | |
| Orlando et al. | Reconstructing ancient genomes and epigenomes | |
| Sha et al. | Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data | |
| Seguin-Orlando et al. | Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes | |
| Marshall et al. | Performance evaluation of a mitogenome capture and Illumina sequencing protocol using non-probative, case-type skeletal samples: Implications for the use of a positive control in a next-generation sequencing procedure | |
| Staats et al. | DNA damage in plant herbarium tissue | |
| MX2023014014A (es) | Composiciones y metodos para modificar genomas usando cpf1 y csm1. | |
| Huang et al. | SNP typing for germplasm identification of Amomum villosum Lour. Based on DNA barcoding markers | |
| EP3821004A1 (en) | Methods and reagents for characterizing genomic editing, clonal expansion, and associated applications | |
| IL295860A (en) | Methods and processes for non-invasive evaluation of genetic variations | |
| CN107400720B (zh) | 一种klf3基因cnv标记辅助检测黄牛生长性状的方法及其专用试剂盒 | |
| AU2019205780A1 (en) | Process for aligning targeted nucleic acid sequencing data | |
| Brozynska et al. | Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding | |
| MX2025001546A (es) | Composiciones y metodos de tratamiento de precision de cancer | |
| PH12018502739A1 (en) | Method for producing dna library and method for analyzing genomic dna using the dna library | |
| Wales et al. | Choosing the best plant for the job: A cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing | |
| CN106591447A (zh) | 一种单细胞全基因组的测序方法 | |
| EP4693336A3 (en) | Genome sequencing and detection techniques | |
| Suchan et al. | Assessing the impact of USER‐treatment on hyRAD capture applied to ancient DNA | |
| Heid et al. | Detection of genome structural variation in normal cells and tissues by single molecule sequencing | |
| EP4155414A1 (en) | Indel molecular marker of ultrasonic mutagenesis salmonella typhimurium hisd gene and use thereof | |
| Linderholm et al. | Cryptic contamination and phylogenetic nonsense | |
| Nugmanov et al. | A pipeline for the error-free identification of somatic Alu insertions in high-throughput sequencing data | |
| Polvino et al. | Detection of Internal Tandem Duplications in the FLT3 gene using PiVAT Software |