IL302207A - Sequencing templates that include several additions and compositions and methods to improve sequencing output - Google Patents
Sequencing templates that include several additions and compositions and methods to improve sequencing outputInfo
- Publication number
- IL302207A IL302207A IL302207A IL30220723A IL302207A IL 302207 A IL302207 A IL 302207A IL 302207 A IL302207 A IL 302207A IL 30220723 A IL30220723 A IL 30220723A IL 302207 A IL302207 A IL 302207A
- Authority
- IL
- Israel
- Prior art keywords
- sequence
- complement
- nucleic acid
- insert
- stranded
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2523/00—Reactions characterised by treatment of reaction samples
- C12Q2523/10—Characterised by chemical treatment
- C12Q2523/101—Crosslinking agents, e.g. psoralen
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
- C12Q2535/122—Massive parallel sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
- C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
- C12Q2537/143—Multiplexing, i.e. use of multiple primers or probes in a single reaction, usually for simultaneously analyse of multiple analysis
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/149—Particles, e.g. beads
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/159—Microreactors, e.g. emulsion PCR or sequencing, droplet PCR, microcapsules, i.e. non-liquid containers with a range of different permeability's for different reaction components
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Immobilizing And Processing Of Enzymes And Microorganisms (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US202063094422P | 2020-10-21 | 2020-10-21 | |
| US202163256040P | 2021-10-15 | 2021-10-15 | |
| PCT/US2021/055878 WO2022087150A2 (en) | 2020-10-21 | 2021-10-20 | Sequencing templates comprising multiple inserts and compositions and methods for improving sequencing throughput |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| IL302207A true IL302207A (en) | 2023-06-01 |
Family
ID=78622058
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| IL302207A IL302207A (en) | 2020-10-21 | 2021-10-20 | Sequencing templates that include several additions and compositions and methods to improve sequencing output |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US20230407388A1 (cg-RX-API-DMAC10.html) |
| EP (1) | EP4232600A2 (cg-RX-API-DMAC10.html) |
| JP (2) | JP7853291B2 (cg-RX-API-DMAC10.html) |
| KR (1) | KR20230091116A (cg-RX-API-DMAC10.html) |
| CN (1) | CN116438319A (cg-RX-API-DMAC10.html) |
| AU (1) | AU2021366658A1 (cg-RX-API-DMAC10.html) |
| CA (1) | CA3198842A1 (cg-RX-API-DMAC10.html) |
| IL (1) | IL302207A (cg-RX-API-DMAC10.html) |
| MX (1) | MX2023004461A (cg-RX-API-DMAC10.html) |
| WO (1) | WO2022087150A2 (cg-RX-API-DMAC10.html) |
Families Citing this family (19)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US11859241B2 (en) | 2021-06-17 | 2024-01-02 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| CA3224352A1 (en) * | 2021-06-17 | 2022-12-22 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| WO2022266470A1 (en) * | 2021-06-17 | 2022-12-22 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| US11220707B1 (en) | 2021-06-17 | 2022-01-11 | Element Biosciences, Inc. | Compositions and methods for pairwise sequencing |
| JP2025507763A (ja) * | 2022-03-01 | 2025-03-21 | ガーダント ヘルス， インコーポレイテッド | シトシンのメチル化およびヒドロキシメチル化を分析するための方法 |
| JP2025509651A (ja) | 2022-03-15 | 2025-04-11 | イルミナ インコーポレイテッド | 並行サンプル及びインデックス配列決定 |
| WO2023175040A2 (en) | 2022-03-15 | 2023-09-21 | Illumina, Inc. | Concurrent sequencing of forward and reverse complement strands on concatenated polynucleotides for methylation detection |
| US20250215492A1 (en) * | 2022-05-26 | 2025-07-03 | Illumina, Inc. | Preparation of long read nucleic acid libraries |
| CA3264896A1 (en) | 2022-08-15 | 2024-02-22 | Element Biosciences, Inc. | SPATIAL RESOLUTION SURFACE CAPTURE OF NUCLEIC ACIDS |
| WO2024061799A1 (en) | 2022-09-19 | 2024-03-28 | Illumina, Inc. | Deformable polymers comprising immobilised primers |
| WO2024213788A1 (en) * | 2023-04-13 | 2024-10-17 | Aniling Sl. | Method of dna sequencing |
| EP4728092A1 (en) | 2023-06-14 | 2026-04-22 | Illumina, Inc. | Determination of modified cytosines |
| WO2024256580A1 (en) | 2023-06-14 | 2024-12-19 | Illumina, Inc. | Concurrent sequencing with spatially separated rings |
| EP4780981A1 (en) | 2023-09-20 | 2026-07-29 | Illumina, Inc. | Concurrent sequencing using nick translation |
| WO2025062001A1 (en) | 2023-09-20 | 2025-03-27 | Illumina, Inc. | Optimised nucleic acid sequencing |
| WO2026006746A2 (en) * | 2024-06-28 | 2026-01-02 | Illumina, Inc. | Nucleic acid preparation and analysis techniques |
| WO2026006622A2 (en) * | 2024-06-28 | 2026-01-02 | Illumina, Inc. | Sequencing full-complement polynucleotides using nanopores |
| WO2026097017A2 (en) | 2024-11-01 | 2026-05-07 | Illumina, Inc. | Methods of improving sequencing accuracy |
| WO2026136388A1 (en) * | 2024-12-19 | 2026-06-25 | Illumina, Inc. | Genomic analysis using tagmentation |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| WO1991006678A1 (en) | 1989-10-26 | 1991-05-16 | Sri International | Dna sequencing |
| EP2327797B1 (en) | 1997-04-01 | 2015-11-25 | Illumina Cambridge Limited | Method of nucleic acid sequencing |
| AR021833A1 (es) | 1998-09-30 | 2002-08-07 | Applied Research Systems | Metodos de amplificacion y secuenciacion de acido nucleico |
| US7955794B2 (en) | 2000-09-21 | 2011-06-07 | Illumina, Inc. | Multiplex nucleic acid reactions |
| EP2100971A3 (en) | 2000-07-07 | 2009-11-25 | Visigen Biotechnologies, Inc. | Real-time sequence determination |
| US7211414B2 (en) | 2000-12-01 | 2007-05-01 | Visigen Biotechnologies, Inc. | Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity |
| US7057026B2 (en) | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
| AU2003259350A1 (en) | 2002-08-23 | 2004-03-11 | Solexa Limited | Modified nucleotides for polynucleotide sequencing |
| EP2789383B1 (en) | 2004-01-07 | 2023-05-03 | Illumina Cambridge Limited | Molecular arrays |
| US7315019B2 (en) | 2004-09-17 | 2008-01-01 | Pacific Biosciences Of California, Inc. | Arrays of optical confinements and uses thereof |
| GB0427236D0 (en) | 2004-12-13 | 2005-01-12 | Solexa Ltd | Improved method of nucleotide detection |
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| SG170802A1 (en) | 2006-03-31 | 2011-05-30 | Solexa Inc | Systems and devices for sequence by synthesis analysis |
| CA2680532C (en) | 2006-04-18 | 2017-03-21 | Advanced Liquid Logic, Inc. | Droplet-based pyrosequencing |
| EP2089517A4 (en) | 2006-10-23 | 2010-10-20 | Pacific Biosciences California | POLYMERASEENZYME AND REAGENTS FOR ADVANCED NUCKIC ACID SEQUENCING |
| US9080211B2 (en) | 2008-10-24 | 2015-07-14 | Epicentre Technologies Corporation | Transposon end compositions and methods for modifying nucleic acids |
| WO2010127304A2 (en) | 2009-05-01 | 2010-11-04 | Illumina, Inc. | Sequencing methods |
| US8753816B2 (en) | 2010-10-26 | 2014-06-17 | Illumina, Inc. | Sequencing methods |
| US9644199B2 (en) | 2012-10-01 | 2017-05-09 | Agilent Technologies, Inc. | Immobilized transposase complexes for DNA fragmentation and tagging |
| US9683230B2 (en) | 2013-01-09 | 2017-06-20 | Illumina Cambridge Limited | Sample preparation on a solid support |
| CN105358715B (zh) | 2013-07-03 | 2018-09-18 | 伊鲁米那股份有限公司 | 正交合成测序 |
| ES2879823T3 (es) * | 2013-11-22 | 2021-11-23 | Labrador Diagnostics Llc | Amplificación de ácidos nucleicos |
| DK3083994T3 (da) | 2013-12-20 | 2021-09-13 | Illumina Inc | Bevarelse af genomisk konnektivitetsinformation i fragmenterede genomiske DNA-prøver |
| CN106507677B (zh) | 2014-04-15 | 2021-03-12 | 伊鲁米那股份有限公司 | 用于改进插入序列偏倚和增加dna输入耐受性的修饰的转座酶 |
| US10975371B2 (en) | 2014-04-29 | 2021-04-13 | Illumina, Inc. | Nucleic acid sequence analysis from single cells |
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| WO2018108328A1 (en) * | 2016-12-16 | 2018-06-21 | F. Hoffmann-La Roche Ag | Method for increasing throughput of single molecule sequencing by concatenating short dna fragments |
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| KR20250143875A (ko) | 2017-02-21 | 2025-10-02 | 일루미나, 인코포레이티드 | 링커를 갖는 고정된 트랜스포좀을 사용한 태그먼트화 |
| CN119824552A (zh) | 2017-05-01 | 2025-04-15 | 伊鲁米那股份有限公司 | 用于多重大规模平行测序的最佳索引序列 |
| SG11201910070PA (en) | 2017-05-08 | 2019-11-28 | Illumina Inc | Universal short adapters for indexing of polynucleotide samples |
| US20180346963A1 (en) * | 2017-06-01 | 2018-12-06 | Counsyl, Inc. | Preparation of Concatenated Polynucleotides |
| US11447818B2 (en) | 2017-09-15 | 2022-09-20 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
| EP3718113B1 (en) | 2017-11-30 | 2025-07-02 | Illumina, Inc. | Validation methods and systems for sequence variant calls |
| WO2020014437A1 (en) | 2018-07-12 | 2020-01-16 | Levine Alison | Modular apparel |
| JP7268352B2 (ja) | 2018-12-28 | 2023-05-08 | 東洋紡株式会社 | アダプターダイマーの生成抑制方法 |
-
2021
- 2021-10-20 EP EP21807406.0A patent/EP4232600A2/en active Pending
- 2021-10-20 JP JP2023524116A patent/JP7853291B2/ja active Active
- 2021-10-20 CN CN202180071179.8A patent/CN116438319A/zh active Pending
- 2021-10-20 CA CA3198842A patent/CA3198842A1/en active Pending
- 2021-10-20 WO PCT/US2021/055878 patent/WO2022087150A2/en not_active Ceased
- 2021-10-20 IL IL302207A patent/IL302207A/en unknown
- 2021-10-20 KR KR1020237016082A patent/KR20230091116A/ko active Pending
- 2021-10-20 AU AU2021366658A patent/AU2021366658A1/en active Pending
- 2021-10-20 MX MX2023004461A patent/MX2023004461A/es unknown
-
2023
- 2023-04-20 US US18/303,905 patent/US20230407388A1/en active Pending
-
2026
- 2026-04-13 JP JP2026065692A patent/JP2026104930A/ja active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| MX2023004461A (es) | 2023-05-03 |
| JP2023547366A (ja) | 2023-11-10 |
| CN116438319A (zh) | 2023-07-14 |
| AU2021366658A9 (en) | 2024-05-02 |
| WO2022087150A3 (en) | 2022-06-30 |
| EP4232600A2 (en) | 2023-08-30 |
| WO2022087150A2 (en) | 2022-04-28 |
| KR20230091116A (ko) | 2023-06-22 |
| JP2026104930A (ja) | 2026-06-25 |
| JP7853291B2 (ja) | 2026-04-28 |
| US20230407388A1 (en) | 2023-12-21 |
| CA3198842A1 (en) | 2022-04-28 |
| AU2021366658A1 (en) | 2023-06-22 |
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