KR20260109960A - 무세포 dna에서의 미세부수체 불안정성 검출 - Google Patents
무세포 dna에서의 미세부수체 불안정성 검출Info
- Publication number
- KR20260109960A KR20260109960A KR1020267020143A KR20267020143A KR20260109960A KR 20260109960 A KR20260109960 A KR 20260109960A KR 1020267020143 A KR1020267020143 A KR 1020267020143A KR 20267020143 A KR20267020143 A KR 20267020143A KR 20260109960 A KR20260109960 A KR 20260109960A
- Authority
- KR
- South Korea
- Prior art keywords
- sample
- nucleic acid
- msi
- microsatellite
- sequencing
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Medical Informatics (AREA)
- Chemical & Material Sciences (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Analytical Chemistry (AREA)
- Data Mining & Analysis (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Organic Chemistry (AREA)
- Bioethics (AREA)
- Artificial Intelligence (AREA)
- Databases & Information Systems (AREA)
- Epidemiology (AREA)
- Evolutionary Computation (AREA)
- Public Health (AREA)
- Software Systems (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Zoology (AREA)
- Immunology (AREA)
- Wood Science & Technology (AREA)
- Pathology (AREA)
- Microbiology (AREA)
- Oncology (AREA)
- Hospice & Palliative Care (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
- Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
Applications Claiming Priority (8)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201862726182P | 2018-08-31 | 2018-08-31 | |
| US62/726,182 | 2018-08-31 | ||
| US201962823578P | 2019-03-25 | 2019-03-25 | |
| US62/823,578 | 2019-03-25 | ||
| US201962857048P | 2019-06-04 | 2019-06-04 | |
| US62/857,048 | 2019-06-04 | ||
| PCT/US2019/048999 WO2020047378A1 (en) | 2018-08-31 | 2019-08-30 | Microsatellite instability detection in cell-free dna |
| KR1020217009381A KR102983176B1 (ko) | 2018-08-31 | 2019-08-30 | 무세포 dna에서의 미세부수체 불안정성 검출 |
Related Parent Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| KR1020217009381A Division KR102983176B1 (ko) | 2018-08-31 | 2019-08-30 | 무세포 dna에서의 미세부수체 불안정성 검출 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| KR20260109960A true KR20260109960A (ko) | 2026-07-13 |
Family
ID=67982149
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| KR1020267020143A Pending KR20260109960A (ko) | 2018-08-31 | 2019-08-30 | 무세포 dna에서의 미세부수체 불안정성 검출 |
| KR1020217009381A Active KR102983176B1 (ko) | 2018-08-31 | 2019-08-30 | 무세포 dna에서의 미세부수체 불안정성 검출 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| KR1020217009381A Active KR102983176B1 (ko) | 2018-08-31 | 2019-08-30 | 무세포 dna에서의 미세부수체 불안정성 검출 |
Country Status (9)
| Country | Link |
|---|---|
| US (7) | US11773451B2 (enExample) |
| EP (1) | EP3844761A1 (enExample) |
| JP (2) | JP7539367B2 (enExample) |
| KR (2) | KR20260109960A (enExample) |
| CN (2) | CN112930569B (enExample) |
| AU (2) | AU2019328344B2 (enExample) |
| CA (1) | CA3109539A1 (enExample) |
| SG (1) | SG11202101400UA (enExample) |
| WO (1) | WO2020047378A1 (enExample) |
Families Citing this family (23)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| AU2010326672A1 (en) | 2009-07-10 | 2011-08-04 | Syngenta Participations Ag | Novel hydroxyphenylpyruvate dioxygenase polypeptides and methods of use |
| CN105190656B (zh) | 2013-01-17 | 2018-01-16 | 佩索纳里斯公司 | 用于遗传分析的方法和系统 |
| US10125399B2 (en) | 2014-10-30 | 2018-11-13 | Personalis, Inc. | Methods for using mosaicism in nucleic acids sampled distal to their origin |
| US11299783B2 (en) | 2016-05-27 | 2022-04-12 | Personalis, Inc. | Methods and systems for genetic analysis |
| JP7470787B2 (ja) | 2019-11-05 | 2024-04-18 | パーソナリス,インコーポレイティド | 単一試料からの腫瘍純度の推定 |
| MX2022011296A (es) | 2020-03-12 | 2023-02-09 | Personal Genome Diagnostics Inc | Distintivos de inestabilidad de microsatélites. |
| CA3170277A1 (en) * | 2020-03-30 | 2021-10-07 | M. Cyrus MAHER | Cancer classification with synthetic training samples |
| KR102717923B1 (ko) * | 2020-12-07 | 2024-10-17 | (주)디엑솜 | 현미부수체 지역의 서열 길이의 변동계수를 이용한 현미부수체 불안정성 진단방법 |
| WO2022124575A1 (ko) * | 2020-12-07 | 2022-06-16 | (주)디엑솜 | 현미부수체 지역의 서열 길이의 변동계수를 이용한 현미부수체 불안정성 진단방법 |
| US20240318256A1 (en) * | 2021-01-29 | 2024-09-26 | INSERM (Institut National de la Santé et de la Recherche Médicale) | Method to diagnose msi cancer |
| US20250131981A1 (en) * | 2021-07-14 | 2025-04-24 | Foundation Medicine, Inc. | Methods and systems for determining microsatellite instability |
| CA3264290A1 (en) * | 2021-08-09 | 2023-02-16 | Canexia Health Inc. | METHODS FOR IDENTIFYING HIGH INSTABILITY OF MICROSATELLITES (MSI-H) IN DNA SAMPLES |
| KR102688594B1 (ko) * | 2021-08-10 | 2024-07-24 | (주)디엑솜 | 현미부수체 지역의 서열 길이의 변화율을 이용한 현미부수체 불안정성 진단방법 |
| KR102781271B1 (ko) * | 2021-08-10 | 2025-03-17 | (주)디엑솜 | 현미부수체 지역의 서열 길이의 최대값과 최소값의 차이를 이용한 현미부수체 불안정성 진단방법 |
| CN113744251B (zh) * | 2021-09-07 | 2023-08-29 | 上海桐树生物科技有限公司 | 基于自注意力机制从病理图片预测微卫星不稳定性的方法 |
| WO2023059654A1 (en) | 2021-10-05 | 2023-04-13 | Personalis, Inc. | Customized assays for personalized cancer monitoring |
| CN114972163B (zh) * | 2022-03-15 | 2025-02-18 | 常州桐树生物科技有限公司 | 基于图卷积神经网络识别微卫星不稳定性状态的方法 |
| EP4526465A1 (en) | 2022-05-17 | 2025-03-26 | Guardant Health, Inc. | Methods for identifying druggable targets and treating cancer |
| WO2024103018A2 (en) * | 2022-11-11 | 2024-05-16 | Memorial Sloan-Kettering Cancer Center | Methods for predicting cancer-associated venous thromboembolism using circulating tumor dna |
| CN116543835B (zh) * | 2023-04-21 | 2024-02-06 | 苏州吉因加生物医学工程有限公司 | 一种检测血浆样本微卫星状态的方法和装置 |
| CN116312781B (zh) * | 2023-05-17 | 2023-08-18 | 普瑞基准科技(北京)有限公司 | 一种基于机器学习的基因组不稳定性评估方法及系统 |
| WO2026006629A1 (en) | 2024-06-27 | 2026-01-02 | Personalis, Inc. | System and method for management of compressed sequencing files |
| KR102799531B1 (ko) * | 2024-09-27 | 2025-04-22 | 구본학 | 파이프용 후처리장치 |
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| ATE226983T1 (de) | 1994-08-19 | 2002-11-15 | Pe Corp Ny | Gekoppeltes ampflikation- und ligationverfahren |
| GB9620209D0 (en) | 1996-09-27 | 1996-11-13 | Cemu Bioteknik Ab | Method of sequencing DNA |
| GB9626815D0 (en) | 1996-12-23 | 1997-02-12 | Cemu Bioteknik Ab | Method of sequencing DNA |
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| AR021833A1 (es) | 1998-09-30 | 2002-08-07 | Applied Research Systems | Metodos de amplificacion y secuenciacion de acido nucleico |
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| EP2100971A3 (en) | 2000-07-07 | 2009-11-25 | Visigen Biotechnologies, Inc. | Real-time sequence determination |
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2019
- 2019-08-30 JP JP2021510455A patent/JP7539367B2/ja active Active
- 2019-08-30 KR KR1020267020143A patent/KR20260109960A/ko active Pending
- 2019-08-30 WO PCT/US2019/048999 patent/WO2020047378A1/en not_active Ceased
- 2019-08-30 CA CA3109539A patent/CA3109539A1/en active Pending
- 2019-08-30 AU AU2019328344A patent/AU2019328344B2/en active Active
- 2019-08-30 SG SG11202101400UA patent/SG11202101400UA/en unknown
- 2019-08-30 KR KR1020217009381A patent/KR102983176B1/ko active Active
- 2019-08-30 EP EP19769633.9A patent/EP3844761A1/en active Pending
- 2019-08-30 CN CN201980071631.3A patent/CN112930569B/zh active Active
- 2019-08-30 CN CN202511402735.1A patent/CN121354685A/zh active Pending
-
2020
- 2020-06-19 US US16/907,034 patent/US11773451B2/en active Active
-
2023
- 2023-08-25 US US18/456,362 patent/US20230416843A1/en active Pending
- 2023-11-02 US US18/500,890 patent/US12344902B2/en active Active
-
2024
- 2024-04-03 JP JP2024060146A patent/JP7699261B2/ja active Active
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2025
- 2025-05-27 US US19/219,819 patent/US12692552B2/en active Active
- 2025-08-29 US US19/314,107 patent/US20250388975A1/en active Pending
- 2025-08-29 US US19/314,113 patent/US20260055472A1/en active Pending
- 2025-08-29 US US19/314,101 patent/US20250384954A1/en active Pending
- 2025-09-02 AU AU2025226669A patent/AU2025226669A1/en active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| KR102983176B1 (ko) | 2026-06-29 |
| US12692552B2 (en) | 2026-07-28 |
| KR20210052511A (ko) | 2021-05-10 |
| US20230416843A1 (en) | 2023-12-28 |
| JP7699261B2 (ja) | 2025-06-26 |
| JP7539367B2 (ja) | 2024-08-23 |
| CN112930569B (zh) | 2025-10-03 |
| EP3844761A1 (en) | 2021-07-07 |
| JP2024084802A (ja) | 2024-06-25 |
| US20250388975A1 (en) | 2025-12-25 |
| WO2020047378A1 (en) | 2020-03-05 |
| AU2019328344B2 (en) | 2025-06-12 |
| US20260055472A1 (en) | 2026-02-26 |
| US12344902B2 (en) | 2025-07-01 |
| JP2021535489A (ja) | 2021-12-16 |
| US20240247319A1 (en) | 2024-07-25 |
| SG11202101400UA (en) | 2021-03-30 |
| US20250384954A1 (en) | 2025-12-18 |
| US11773451B2 (en) | 2023-10-03 |
| US20250283181A1 (en) | 2025-09-11 |
| CN112930569A (zh) | 2021-06-08 |
| US20210363586A1 (en) | 2021-11-25 |
| AU2019328344A1 (en) | 2021-04-08 |
| CA3109539A1 (en) | 2020-03-05 |
| AU2025226669A1 (en) | 2025-09-18 |
| CN121354685A (zh) | 2026-01-16 |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| A16 | Divisional, continuation or continuation in part application filed |
Free format text: ST27 STATUS EVENT CODE: A-0-1-A10-A16-DIV-PA0104 (AS PROVIDED BY THE NATIONAL OFFICE) |
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| PA0104 | Divisional application for international application |
St.27 status event code: A-0-1-A10-A16-div-PA0104 |
|
| PG1501 | Laying open of application |
St.27 status event code: A-1-1-Q10-Q12-nap-PG1501 |
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| Q12 | Application published |
Free format text: ST27 STATUS EVENT CODE: A-1-1-Q10-Q12-NAP-PG1501 (AS PROVIDED BY THE NATIONAL OFFICE) |