KR101685712B1 - 맞춤형 멀티사이트 조합 어셈블리 - Google Patents
맞춤형 멀티사이트 조합 어셈블리 Download PDFInfo
- Publication number
- KR101685712B1 KR101685712B1 KR1020107003986A KR20107003986A KR101685712B1 KR 101685712 B1 KR101685712 B1 KR 101685712B1 KR 1020107003986 A KR1020107003986 A KR 1020107003986A KR 20107003986 A KR20107003986 A KR 20107003986A KR 101685712 B1 KR101685712 B1 KR 101685712B1
- Authority
- KR
- South Korea
- Prior art keywords
- primers
- primer
- polynucleotide
- template
- mutations
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/102—Mutagenizing nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/26—Preparation of nitrogen-containing carbohydrates
- C12P19/28—N-glycosides
- C12P19/30—Nucleotides
- C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/102—Mutagenizing nucleic acids
- C12N15/1024—In vivo mutagenesis using high mutation rate "mutator" host strains by inserting genetic material, e.g. encoding an error prone polymerase, disrupting a gene for mismatch repair
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
- C12R2001/00—Microorganisms ; Processes using microorganisms
- C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
- C12R2001/185—Escherichia
- C12R2001/19—Escherichia coli
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Biomedical Technology (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Plant Pathology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Crystallography & Structural Chemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US95317107P | 2007-07-31 | 2007-07-31 | |
| US60/953,171 | 2007-07-31 | ||
| PCT/US2008/071771 WO2009018449A1 (en) | 2007-07-31 | 2008-07-31 | Tailored multi-site combinatorial assembly |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| KR20100045494A KR20100045494A (ko) | 2010-05-03 |
| KR101685712B1 true KR101685712B1 (ko) | 2016-12-12 |
Family
ID=40304880
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| KR1020107003986A Expired - Fee Related KR101685712B1 (ko) | 2007-07-31 | 2008-07-31 | 맞춤형 멀티사이트 조합 어셈블리 |
Country Status (16)
| Country | Link |
|---|---|
| US (1) | US9476078B2 (enExample) |
| EP (2) | EP3031919B1 (enExample) |
| JP (1) | JP6014805B2 (enExample) |
| KR (1) | KR101685712B1 (enExample) |
| CN (2) | CN104673784A (enExample) |
| AU (1) | AU2008282101A1 (enExample) |
| BR (1) | BRPI0815046A2 (enExample) |
| CA (1) | CA2693102C (enExample) |
| DK (1) | DK3031919T3 (enExample) |
| EA (1) | EA020657B1 (enExample) |
| ES (1) | ES2701883T3 (enExample) |
| IL (1) | IL202839A0 (enExample) |
| MX (1) | MX353478B (enExample) |
| NZ (1) | NZ582876A (enExample) |
| WO (1) | WO2009018449A1 (enExample) |
| ZA (1) | ZA201000152B (enExample) |
Families Citing this family (22)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US8198062B2 (en) | 2008-08-29 | 2012-06-12 | Dsm Ip Assets B.V. | Hydrolases, nucleic acids encoding them and methods for making and using them |
| AU2010249500B2 (en) | 2009-05-21 | 2016-03-24 | Basf Enzymes Llc | Phytases, nucleic acids encoding them and methods for making and using them |
| EP2625269A2 (en) | 2010-10-06 | 2013-08-14 | BP Corporation North America Inc. | Variant cbh i polypeptides with reduced product inhibition |
| US20150376590A1 (en) | 2012-11-02 | 2015-12-31 | Bp Corporation North America Inc. | Thermotolerant Beta-Glucosidase Variants |
| GB201308828D0 (en) | 2013-03-12 | 2013-07-03 | Verenium Corp | Phytase |
| GB201308843D0 (en) | 2013-03-14 | 2013-07-03 | Verenium Corp | Phytase formulation |
| KR20160033711A (ko) | 2013-07-25 | 2016-03-28 | 바스프 엔자임스 엘엘씨 | 피타아제 |
| WO2018183612A1 (en) * | 2017-03-29 | 2018-10-04 | Editas Medicine, Inc. | Nucleic acid mutagenesis methods |
| WO2019081976A2 (en) | 2017-10-25 | 2019-05-02 | Basf Se | BETA-AMYLASE ENZYMES |
| CN111788306A (zh) | 2017-12-20 | 2020-10-16 | 巴斯夫欧洲公司 | 核酸酶以及用于制备和使用其的方法 |
| EP3728620A4 (en) * | 2017-12-20 | 2021-11-03 | Basf Se | GENE SITE SATURATION MUTAGENESIS (GSSM) PROCESS |
| WO2019206994A1 (en) | 2018-04-26 | 2019-10-31 | Basf Se | Lipase enzymes |
| EP3802813A1 (en) | 2018-05-29 | 2021-04-14 | Basf Se | Amylase enzymes |
| US20220025391A1 (en) | 2018-09-07 | 2022-01-27 | Basf Plant Science Company Gmbh | Improved method for the production of high levels of pufa in plants |
| WO2020049159A1 (en) | 2018-09-07 | 2020-03-12 | Basf Plant Science Company Gmbh | Improved method for the production of high levels of pufa in plants |
| CA3110651A1 (en) | 2018-09-07 | 2020-03-12 | Basf Plant Science Company Gmbh | Improved method for the production of high levels of pufa in plants |
| WO2020185737A1 (en) | 2019-03-11 | 2020-09-17 | Basf Se | Amylases and methods for making and using them |
| CN114096271B (zh) | 2019-04-23 | 2024-04-12 | 巴斯夫欧洲公司 | β-淀粉酶变体 |
| WO2021122528A1 (en) | 2019-12-20 | 2021-06-24 | Basf Se | Decreasing toxicity of terpenes and increasing the production potential in micro-organisms |
| CN115516102B (zh) | 2020-06-04 | 2025-10-31 | 艾瑟拜奥尼克斯公司 | 合成的檀香烯合酶 |
| EP4015626A1 (en) | 2020-12-18 | 2022-06-22 | Isobionics B.V. | Enzymes and methods for fermentative production of monoterpene esters |
| JP2024528957A (ja) | 2021-08-02 | 2024-08-01 | ビーエーエスエフ ソシエタス・ヨーロピア | イオニリデンエタンシンターゼによる新規な芳香化合物の生成 |
Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2004507243A (ja) | 2000-08-25 | 2004-03-11 | ビオメトード | 大量特異的変異導入方法 |
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| US4683195A (en) | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
| US4683202A (en) * | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
| US5849482A (en) * | 1988-09-28 | 1998-12-15 | Epoch Pharmaceuticals, Inc. | Crosslinking oligonucleotides |
| WO1992018619A1 (en) * | 1991-04-10 | 1992-10-29 | The Scripps Research Institute | Heterodimeric receptor libraries using phagemids |
| CA2126438C (en) | 1991-12-24 | 2003-12-02 | Jac A. Nickoloff | Site-directed mutagenesis of dna |
| US20030194807A1 (en) * | 1992-11-02 | 2003-10-16 | Roberto Crea | Walk-through mutagenesis |
| CA2166079C (en) | 1993-06-25 | 2009-11-17 | Peter Glazer | Chemically modified oligonucleotide for site-directed mutagenesis |
| US6165793A (en) * | 1996-03-25 | 2000-12-26 | Maxygen, Inc. | Methods for generating polynucleotides having desired characteristics by iterative selection and recombination |
| US6335160B1 (en) | 1995-02-17 | 2002-01-01 | Maxygen, Inc. | Methods and compositions for polypeptide engineering |
| US6764835B2 (en) * | 1995-12-07 | 2004-07-20 | Diversa Corporation | Saturation mutageneis in directed evolution |
| US5965408A (en) * | 1996-07-09 | 1999-10-12 | Diversa Corporation | Method of DNA reassembly by interrupting synthesis |
| US20020028443A1 (en) * | 1999-09-27 | 2002-03-07 | Jay M. Short | Method of dna shuffling with polynucleotides produced by blocking or interrupting a synthesis or amplification process |
| US6740506B2 (en) * | 1995-12-07 | 2004-05-25 | Diversa Corporation | End selection in directed evolution |
| US6352842B1 (en) * | 1995-12-07 | 2002-03-05 | Diversa Corporation | Exonucease-mediated gene assembly in directed evolution |
| US6238884B1 (en) * | 1995-12-07 | 2001-05-29 | Diversa Corporation | End selection in directed evolution |
| US5830696A (en) * | 1996-12-05 | 1998-11-03 | Diversa Corporation | Directed evolution of thermophilic enzymes |
| US6939689B2 (en) * | 1995-12-07 | 2005-09-06 | Diversa Corporation | Exonuclease-mediated nucleic acid reassembly in directed evolution |
| US6537776B1 (en) * | 1999-06-14 | 2003-03-25 | Diversa Corporation | Synthetic ligation reassembly in directed evolution |
| US6479258B1 (en) * | 1995-12-07 | 2002-11-12 | Diversa Corporation | Non-stochastic generation of genetic vaccines |
| US20040023327A1 (en) * | 1995-12-07 | 2004-02-05 | Short Jay M. | End selection in directed evolution |
| US6171820B1 (en) * | 1995-12-07 | 2001-01-09 | Diversa Corporation | Saturation mutagenesis in directed evolution |
| US6358709B1 (en) * | 1995-12-07 | 2002-03-19 | Diversa Corporation | End selection in directed evolution |
| US6489145B1 (en) * | 1996-07-09 | 2002-12-03 | Diversa Corporation | Method of DNA shuffling |
| US6361974B1 (en) * | 1995-12-07 | 2002-03-26 | Diversa Corporation | Exonuclease-mediated nucleic acid reassembly in directed evolution |
| US6713279B1 (en) * | 1995-12-07 | 2004-03-30 | Diversa Corporation | Non-stochastic generation of genetic vaccines and enzymes |
| US6562594B1 (en) * | 1999-09-29 | 2003-05-13 | Diversa Corporation | Saturation mutagenesis in directed evolution |
| US5789166A (en) | 1995-12-08 | 1998-08-04 | Stratagene | Circular site-directed mutagenesis |
| GB9701425D0 (en) | 1997-01-24 | 1997-03-12 | Bioinvent Int Ab | A method for in vitro molecular evolution of protein function |
| DE69940879D1 (de) * | 1998-11-11 | 2009-06-25 | Japan Science & Tech Agency | Verfahren zur mutagenese |
| US6376191B1 (en) * | 2000-03-22 | 2002-04-23 | Mergen, Ltd. | Microarray-based analysis of polynucleotide sequence variations |
| JP3859947B2 (ja) * | 2000-08-04 | 2006-12-20 | 独立行政法人理化学研究所 | 突然変異導入方法 |
| ATE400648T1 (de) * | 2000-08-11 | 2008-07-15 | Genencor Int | Transformation von bacillus, transformanten und mutanten-bibliotheken |
| USPP13969P3 (en) | 2001-04-05 | 2003-07-15 | Her Majesty The Queen In Right Of Canada As Represented By The Minister Of Agriculture | Shrub rose plant named ‘Morden Sunrise’ |
| EP1417327B1 (en) * | 2001-07-26 | 2009-06-03 | Stratagene California | Multi-site mutagenesis |
| DE10148607A1 (de) * | 2001-10-02 | 2003-04-10 | Max Planck Gesellschaft | Methoden zur DNA-Manipulation |
| WO2003040376A1 (en) * | 2001-11-02 | 2003-05-15 | Olga Makarova | Method for site-directed mutagenesis of nucleic acid molecules using a single primer |
| EP1451370A2 (en) * | 2001-12-03 | 2004-09-01 | Diversa Corporation | Chromosomal saturation mutagenesis |
| AUPS263402A0 (en) * | 2002-05-29 | 2002-06-20 | Young, Lei | Targeted amplification of template strand (TATS) technology, and its use in DNA mutagenesis, deletion & insertion |
| US20060134624A1 (en) * | 2003-02-06 | 2006-06-22 | Salerno John C | Polymerase-based protocols for the introductions of deletions and insertions |
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| US20060223066A1 (en) * | 2005-03-29 | 2006-10-05 | Applera Corporation | Methods for normalizing and for identifying small nucleic acids |
| JP2008546424A (ja) * | 2005-06-28 | 2008-12-25 | アジェンコート パーソナル ジェノミクス コーポレイション | 修飾ポリヌクレオチドを作製する方法および配列決定する方法 |
-
2008
- 2008-07-31 DK DK16154206.3T patent/DK3031919T3/en active
- 2008-07-31 KR KR1020107003986A patent/KR101685712B1/ko not_active Expired - Fee Related
- 2008-07-31 CN CN201510050333.XA patent/CN104673784A/zh active Pending
- 2008-07-31 US US12/671,231 patent/US9476078B2/en not_active Expired - Fee Related
- 2008-07-31 EP EP16154206.3A patent/EP3031919B1/en active Active
- 2008-07-31 ES ES16154206T patent/ES2701883T3/es active Active
- 2008-07-31 WO PCT/US2008/071771 patent/WO2009018449A1/en not_active Ceased
- 2008-07-31 EP EP08782567A patent/EP2183378A4/en not_active Ceased
- 2008-07-31 AU AU2008282101A patent/AU2008282101A1/en not_active Abandoned
- 2008-07-31 CN CN200880101253.0A patent/CN101821402B/zh not_active Expired - Fee Related
- 2008-07-31 MX MX2010001182A patent/MX353478B/es active IP Right Grant
- 2008-07-31 JP JP2010520191A patent/JP6014805B2/ja not_active Expired - Fee Related
- 2008-07-31 BR BRPI0815046-0A2A patent/BRPI0815046A2/pt not_active Application Discontinuation
- 2008-07-31 NZ NZ582876A patent/NZ582876A/en not_active IP Right Cessation
- 2008-07-31 CA CA2693102A patent/CA2693102C/en active Active
- 2008-07-31 EA EA201070206A patent/EA020657B1/ru not_active IP Right Cessation
-
2009
- 2009-12-20 IL IL202839A patent/IL202839A0/en unknown
-
2010
- 2010-01-08 ZA ZA2010/00152A patent/ZA201000152B/en unknown
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2004507243A (ja) | 2000-08-25 | 2004-03-11 | ビオメトード | 大量特異的変異導入方法 |
Non-Patent Citations (2)
| Title |
|---|
| Holly H. Hogrefe 등. Biotechniques. Vol. 33, No. 5, 페이지 1158-1165 |
| Ralf D. Kirsch 등. Nucleic acids Research. Vol. 26, No. 7, 페이지 1848-1850 (1998.) |
Also Published As
| Publication number | Publication date |
|---|---|
| CA2693102A1 (en) | 2009-02-05 |
| WO2009018449A1 (en) | 2009-02-05 |
| MX2010001182A (es) | 2010-04-21 |
| DK3031919T3 (en) | 2019-01-07 |
| US9476078B2 (en) | 2016-10-25 |
| MX353478B (es) | 2018-01-15 |
| ES2701883T3 (es) | 2019-02-26 |
| KR20100045494A (ko) | 2010-05-03 |
| EP3031919B1 (en) | 2018-09-19 |
| JP2010535034A (ja) | 2010-11-18 |
| US20100216192A1 (en) | 2010-08-26 |
| IL202839A0 (en) | 2010-06-30 |
| AU2008282101A1 (en) | 2009-02-05 |
| EP3031919A1 (en) | 2016-06-15 |
| CN104673784A (zh) | 2015-06-03 |
| EA020657B1 (ru) | 2014-12-30 |
| ZA201000152B (en) | 2011-06-29 |
| CA2693102C (en) | 2020-03-10 |
| EP2183378A4 (en) | 2010-09-22 |
| BRPI0815046A2 (pt) | 2014-10-14 |
| EA201070206A1 (ru) | 2010-06-30 |
| NZ582876A (en) | 2012-07-27 |
| JP6014805B2 (ja) | 2016-10-26 |
| EP2183378A1 (en) | 2010-05-12 |
| CN101821402A (zh) | 2010-09-01 |
| CN101821402B (zh) | 2015-03-04 |
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