JP7651470B2 - 核酸を解析するための方法および組成物 - Google Patents
核酸を解析するための方法および組成物 Download PDFInfo
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- JP7651470B2 JP7651470B2 JP2021559245A JP2021559245A JP7651470B2 JP 7651470 B2 JP7651470 B2 JP 7651470B2 JP 2021559245 A JP2021559245 A JP 2021559245A JP 2021559245 A JP2021559245 A JP 2021559245A JP 7651470 B2 JP7651470 B2 JP 7651470B2
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1068—Template (nucleic acid) mediated chemical library synthesis, e.g. chemical and enzymatical DNA-templated organic molecule synthesis, libraries prepared by non ribosomal polypeptide synthesis [NRPS], DNA/RNA-polymerase mediated polypeptide synthesis
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2330/00—Production
- C12N2330/30—Production chemically synthesised
- C12N2330/31—Libraries, arrays
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- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biomedical Technology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Bioinformatics & Computational Biology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2024189679A JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Applications Claiming Priority (7)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201962830211P | 2019-04-05 | 2019-04-05 | |
| US62/830,211 | 2019-04-05 | ||
| US201962861594P | 2019-06-14 | 2019-06-14 | |
| US62/861,594 | 2019-06-14 | ||
| US201962925132P | 2019-10-23 | 2019-10-23 | |
| US62/925,132 | 2019-10-23 | ||
| PCT/US2020/026421 WO2020206143A1 (en) | 2019-04-05 | 2020-04-02 | Methods and compositions for analyzing nucleic acid |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024189679A Division JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2022528139A JP2022528139A (ja) | 2022-06-08 |
| JP2022528139A5 JP2022528139A5 (enExample) | 2023-03-13 |
| JP7651470B2 true JP7651470B2 (ja) | 2025-03-26 |
Family
ID=70465467
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2021559245A Active JP7651470B2 (ja) | 2019-04-05 | 2020-04-02 | 核酸を解析するための方法および組成物 |
| JP2024189679A Pending JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024189679A Pending JP2025014018A (ja) | 2019-04-05 | 2024-10-29 | 核酸を解析するための方法および組成物 |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US20220348906A1 (enExample) |
| EP (2) | EP4538390A3 (enExample) |
| JP (2) | JP7651470B2 (enExample) |
| KR (1) | KR20210148304A (enExample) |
| CN (1) | CN114174530A (enExample) |
| AU (1) | AU2020253471B2 (enExample) |
| CA (1) | CA3134831A1 (enExample) |
| IL (1) | IL286945A (enExample) |
| SG (1) | SG11202110468YA (enExample) |
| WO (1) | WO2020206143A1 (enExample) |
Families Citing this family (27)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2019236726A1 (en) | 2018-06-06 | 2019-12-12 | The Regents Of The University Of California | Methods of producing nucleic acid libraries and compositions and kits for practicing same |
| WO2021007462A1 (en) * | 2019-07-09 | 2021-01-14 | The Translational Genomics Research Institute | METHODS OF DETECTING DISEASE AND TREATMENT RESPONSE IN cfDNA |
| US20230014607A1 (en) | 2019-10-09 | 2023-01-19 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| CN110669830B (zh) * | 2019-10-24 | 2023-05-23 | 裕策医疗器械江苏有限公司 | 一种低质量ffpe dna的处理方法、装置和存储介质 |
| EP4342999B1 (en) * | 2020-01-16 | 2025-06-11 | DNAe Diagnostics Limited | Compositions, kits and methods for isolating target polynucleotides |
| DK4172357T3 (da) * | 2020-06-24 | 2024-08-05 | Claret Bioscience Llc | Fremgangsmåder og sammensætninger til analyse af nucleinsyrer |
| WO2022020346A1 (en) | 2020-07-21 | 2022-01-27 | Claret Bioscience, Llc | Cancer detection, monitoring, and reporting from sequencing cell-free dna |
| WO2022076574A1 (en) | 2020-10-08 | 2022-04-14 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| TW202242130A (zh) * | 2020-12-29 | 2022-11-01 | 比利時商比利時意志有限公司 | 循環轉錄因子分析 |
| US20250304953A1 (en) * | 2021-02-18 | 2025-10-02 | Seoul National University R&Db Foundation | Method for purifying nucleic acid library |
| BR112023019154A2 (pt) * | 2021-03-31 | 2023-10-17 | Illumina Cambridge Ltd | Técnicas de sequenciamento de bibliotecas de ácidos nucleicos com detecção de dímero de adaptador |
| CN115197998A (zh) * | 2021-04-13 | 2022-10-18 | 广东菲鹏生物有限公司 | 一种单链核酸分子测序文库构建方法 |
| GB2606158B (en) * | 2021-04-26 | 2023-12-27 | Wobble Genomics Ltd | Amplification of single stranded DNA |
| US20240344056A1 (en) * | 2021-06-04 | 2024-10-17 | Somagenics, Inc. | Improved method of sequencing library preparation for short dna |
| WO2023063958A1 (en) * | 2021-10-15 | 2023-04-20 | Qiagen Sciences, Llc | Methods for producing dna libraries and uses thereof |
| US20250019693A1 (en) * | 2022-02-17 | 2025-01-16 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| US20250382607A1 (en) * | 2022-05-17 | 2025-12-18 | Nanjing GenScript Biotech Co., Ltd. | Sgrna sequencing linker and use thereof |
| TW202405189A (zh) * | 2022-06-28 | 2024-02-01 | 南韓商西諾海利斯股份有限公司 | 用於核糖核酸鹼基序列分析的樣本庫製備方法 |
| US20260078439A1 (en) * | 2022-08-24 | 2026-03-19 | The Regents Of The University Of California | Next-Generation Sequencing Pipeline for Detection of Ultrashort Single-Stranded Cell-Free DNA |
| WO2024054517A1 (en) * | 2022-09-08 | 2024-03-14 | Claret Bioscience, Llc | Methods and compositions for analyzing nucleic acid |
| CN116426607A (zh) * | 2022-12-23 | 2023-07-14 | 南京诺唯赞生物科技股份有限公司 | 一种dna建库预混液 |
| WO2024192634A1 (zh) * | 2023-03-20 | 2024-09-26 | 深圳华大智造科技股份有限公司 | 一种高效且快速进行核酸文库构建的方法 |
| EP4724637A1 (en) * | 2023-06-07 | 2026-04-15 | Claret Bioscience, LLC | Methods and compositions for analyzing nucleic acid |
| CN121969766A (zh) | 2023-08-31 | 2026-05-01 | 因美纳有限公司 | 适体检测技术 |
| EP4784792A1 (en) * | 2023-09-28 | 2026-08-05 | The Regents of the University of California | Methods and compositions for producing sequencing libraries |
| WO2025179170A2 (en) * | 2024-02-22 | 2025-08-28 | Canal Biosciences, Inc. | Single-stranded end preserving adaptors |
| WO2026058704A1 (ja) * | 2024-09-10 | 2026-03-19 | 国立大学法人 東京大学 | Dnaバーコード配列を含む一本鎖 dnaの合成方法(method for synthesizing single-stranded dna containing dna barcode sequences) |
Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2014164466A1 (en) | 2013-03-12 | 2014-10-09 | E. I. Du Pont De Nemours And Company | Methods for the identification of variant recognition sites for rare-cutting engineered double-strand-break-inducing agents and compositions and uses thereof |
| JP2014528713A (ja) | 2011-09-07 | 2014-10-30 | エックス−ケム インコーポレイテッド | Dnaコードライブラリーをタグ付けするための方法 |
| JP2015521468A (ja) | 2012-06-18 | 2015-07-30 | ニューゲン テクノロジーズ, インコーポレイテッド | 望まれない核酸配列のネガティブ選択のための組成物および方法 |
Family Cites Families (22)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6927028B2 (en) | 2001-08-31 | 2005-08-09 | Chinese University Of Hong Kong | Non-invasive methods for detecting non-host DNA in a host using epigenetic differences between the host and non-host DNA |
| EP1817430B1 (en) | 2004-11-29 | 2009-09-16 | Klinikum der Universität Regensburg | Means and methods for detecting methylated dna |
| EP3260556B1 (en) | 2006-05-31 | 2019-07-31 | Sequenom, Inc. | Methods for the extraction of nucleic acid from a sample |
| EP2038426A2 (en) | 2006-06-16 | 2009-03-25 | Sequenom, Inc. | Methods and compositions for the amplification, detection and quantification of nucleic acid from a sample |
| WO2009032779A2 (en) | 2007-08-29 | 2009-03-12 | Sequenom, Inc. | Methods and compositions for the size-specific seperation of nucleic acid from a sample |
| WO2009032781A2 (en) | 2007-08-29 | 2009-03-12 | Sequenom, Inc. | Methods and compositions for universal size-specific polymerase chain reaction |
| WO2009120808A2 (en) | 2008-03-26 | 2009-10-01 | Sequenom, Inc. | Restriction endonuclease enhanced polymorphic sequence detection |
| US8476013B2 (en) | 2008-09-16 | 2013-07-02 | Sequenom, Inc. | Processes and compositions for methylation-based acid enrichment of fetal nucleic acid from a maternal sample useful for non-invasive prenatal diagnoses |
| EP3103871B1 (en) | 2008-09-16 | 2020-07-29 | Sequenom, Inc. | Processes for methylation-based enrichment of fetal nucleic acid from a maternal sample useful for fetal nucleic acid quantification |
| US8771948B2 (en) | 2009-04-03 | 2014-07-08 | Sequenom, Inc. | Nucleic acid preparation compositions and methods |
| SG185544A1 (en) | 2010-05-14 | 2012-12-28 | Fluidigm Corp | Nucleic acid isolation methods |
| WO2013019361A1 (en) | 2011-07-07 | 2013-02-07 | Life Technologies Corporation | Sequencing methods |
| EP3296408A1 (en) | 2013-09-05 | 2018-03-21 | The Jackson Laboratory | Compositions for rna-chromatin interaction analysis and uses thereof |
| CN105441429A (zh) * | 2014-08-08 | 2016-03-30 | 深圳华大基因科技有限公司 | 一种制备腺苷酰化接头的方法及腺苷酰化接头 |
| US11014957B2 (en) * | 2015-12-21 | 2021-05-25 | Realseq Biosciences, Inc. | Methods of library construction for polynucleotide sequencing |
| CN109563543B (zh) * | 2016-07-15 | 2022-08-30 | 加利福尼亚大学董事会 | 产生核酸库的方法 |
| KR102548274B1 (ko) * | 2017-03-20 | 2023-06-27 | 일루미나, 인코포레이티드 | 핵산 라이브러리를 제조하기 위한 방법 및 조성물 |
| CN118638898A (zh) | 2017-03-23 | 2024-09-13 | 华盛顿大学 | 用于靶向核酸序列富集的方法及在错误纠正的核酸测序中的应用 |
| US11198865B2 (en) | 2017-11-02 | 2021-12-14 | Amanda Raine | Splinted ligation adapter tagging |
| CN119432800A (zh) | 2018-05-16 | 2025-02-14 | 生物辐射实验室股份有限公司 | 处理核酸样本的方法 |
| WO2019236726A1 (en) * | 2018-06-06 | 2019-12-12 | The Regents Of The University Of California | Methods of producing nucleic acid libraries and compositions and kits for practicing same |
| AU2019282812B2 (en) | 2018-06-07 | 2025-08-14 | Arc Bio, Llc | Compositions and methods for making guide nucleic acids |
-
2020
- 2020-04-02 WO PCT/US2020/026421 patent/WO2020206143A1/en not_active Ceased
- 2020-04-02 EP EP24219197.1A patent/EP4538390A3/en active Pending
- 2020-04-02 SG SG11202110468YA patent/SG11202110468YA/en unknown
- 2020-04-02 EP EP20722098.9A patent/EP3947723B1/en active Active
- 2020-04-02 JP JP2021559245A patent/JP7651470B2/ja active Active
- 2020-04-02 AU AU2020253471A patent/AU2020253471B2/en active Active
- 2020-04-02 CN CN202080039264.1A patent/CN114174530A/zh active Pending
- 2020-04-02 CA CA3134831A patent/CA3134831A1/en active Pending
- 2020-04-02 KR KR1020217036028A patent/KR20210148304A/ko active Pending
- 2020-04-02 US US17/440,386 patent/US20220348906A1/en active Pending
-
2021
- 2021-10-04 IL IL286945A patent/IL286945A/en unknown
-
2024
- 2024-10-29 JP JP2024189679A patent/JP2025014018A/ja active Pending
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2014528713A (ja) | 2011-09-07 | 2014-10-30 | エックス−ケム インコーポレイテッド | Dnaコードライブラリーをタグ付けするための方法 |
| JP2015521468A (ja) | 2012-06-18 | 2015-07-30 | ニューゲン テクノロジーズ, インコーポレイテッド | 望まれない核酸配列のネガティブ選択のための組成物および方法 |
| WO2014164466A1 (en) | 2013-03-12 | 2014-10-09 | E. I. Du Pont De Nemours And Company | Methods for the identification of variant recognition sites for rare-cutting engineered double-strand-break-inducing agents and compositions and uses thereof |
Non-Patent Citations (1)
| Title |
|---|
| Nucleic Acids Research,2017年,vol.45,no.6,e36,1-15 |
Also Published As
| Publication number | Publication date |
|---|---|
| EP4538390A2 (en) | 2025-04-16 |
| EP3947723C0 (en) | 2024-12-18 |
| KR20210148304A (ko) | 2021-12-07 |
| CA3134831A1 (en) | 2020-10-08 |
| EP3947723A1 (en) | 2022-02-09 |
| EP4538390A3 (en) | 2025-07-09 |
| IL286945A (en) | 2021-12-01 |
| CN114174530A (zh) | 2022-03-11 |
| JP2025014018A (ja) | 2025-01-28 |
| US20220348906A1 (en) | 2022-11-03 |
| WO2020206143A9 (en) | 2021-12-23 |
| EP3947723B1 (en) | 2024-12-18 |
| WO2020206143A1 (en) | 2020-10-08 |
| AU2020253471B2 (en) | 2026-07-30 |
| SG11202110468YA (en) | 2021-10-28 |
| JP2022528139A (ja) | 2022-06-08 |
| AU2020253471A1 (en) | 2021-10-14 |
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