JP2020513747A - フィトエンを産生する方法 - Google Patents
フィトエンを産生する方法 Download PDFInfo
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- JP2020513747A JP2020513747A JP2019532055A JP2019532055A JP2020513747A JP 2020513747 A JP2020513747 A JP 2020513747A JP 2019532055 A JP2019532055 A JP 2019532055A JP 2019532055 A JP2019532055 A JP 2019532055A JP 2020513747 A JP2020513747 A JP 2020513747A
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- phytoene
- gene
- bacterium
- recombinant
- deinococcus bacterium
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Abstract
Description
本発明の文脈において、「デイノコッカス(Deinococcus)」という用語は、デイノコッカスの野生型株又は自然変異株、例えば進化促進、突然変異誘発や、DNAシャフリング技術によって取得した株、又は真核生物性核酸、原核生物性核酸、及び/若しくは合成性核酸の挿入により取得した組換え株を含む。デイノコッカス細菌は、限定ではなく、D.アクチノスクレラス(D.actinosclerus)、D.アエリウス(D.aerius)、D.aerolatus、D.アエロフィルス(D.aerophilus)、D.アエセリウス(D.aetherius)、D.alpinitundrae、D.アルティトゥディニス(D.altitudinis)、D.アンタルクティカス(D.antarticus)、D.アパチェンシス(D.apachensis)、D.アクアティカス(D.aquaticus)、D.アクアティカス、D.アクアティリス(D.aquatilis)、D.aquiradiocola、D.カエニ(D.caeni)、D.カリ(D.carri)、D.セルロシリティカス(D.cellulosilyticus)、D.シトリ(D.citri)、D.claudionis、D.テジョネンシス(D.daejeonensis)、D.デポリメランス(D.depolymerans)、D.デゼルティ(D.desertii)、D.enclensis、D.フィカス(D.ficus)、D.フリゲンス(D.frigens)、D.ジオサーマリス(D.geothermalis)、D.ゴビエンシス(D.gobiensis)、D.グランディス(D.grandis)、D.guangriensis、D.guilhemensis、D.ホホカメンシス(D.hohokamensis)、D.ホピエンシス(D.hopiensis)、D.ヒュミ(D.humi)、D.インディカス(D.indicus)、D.マリコペンシス(D.maricopensis)、D.マルモリス(D.marmoris)、D.メタリ(D.metalli)、D.metallilatus、D.ミサセンシス(D.misasensis)、D.ムライ(D.murrayi)、D.ナヴァホネンシス(D.navajonensis)、D.パパゴネンシス(D.papagonensis)、D.ペラリディリトリス(D.peraridilitoris)、D.フォエニシス(D.phoenicis)、D.ピメンシス(D.pimensis)、D.ピシス(D.piscis)、D.プロテオライティカス(D.proteolyticus)、D.プニセウス(D.puniceus)、D.ラディオデュランス(D.radiodurans)、D.radiomollis、D.ラディオフィルス(D.radiophilus)、D.ラディオピュグナンス(D.radiopugnans)、D.ラディオレジステンス(D.radioresistens)、D.ラディオトレランス(D.radiotolerans)、D.reticulitermitis、D.ロゼウス(D.roseus)、D.sahariens、D.サキシコーラ(D.saxicola)、D.ソリ(D.soli)、D.ソノレンシス(D.sonorensis)、D.swuensis、D.wulumuqiensis、D.シンジャンゲンシス(D.xinjiangensis)、D.xibeiensis、D.ヤバパイエンシス(D.yavapaiensis)細菌、又はそれらの任意の組合せ、などの任意のデイノコッカス属細菌を指すことができる。好ましくは、「デイノコッカス」という用語は、D.ジオサーマリス(D.geothermalis)、D.ムライ(D.murrayi)、D.グランディス(D.grandis)、D.アクアティカス(D.aquaticus)、D.インディカス(D.indicus)、D.セルロシリティカス(D.cellulosilyticus)、D.デポリメランス(D.depolymerans)、又はD.マリコペンシス(D.maricopensis)を指す。より好ましくは、「デイノコッカス」という用語は、D.ジオサーマリス、D.ムライ、又はD.マリコペンシスを指す。さらにより好ましくは、「デイノコッカス」という用語は、D.ジオサーマリスを指す。
a) 配列番号1〜12よりなる群から選択される、好ましくは配列番号3〜12よりなる群から選択される、より好ましくは配列番号3であるアミノ酸配列を含む、又はそれからなるポリペプチド、及び、
b) フィトエンシンターゼ活性を示すとともに、配列番号1〜12よりなる群から選択される任意の配列、好ましくは配列番号3〜12よりなる群から選択される任意の配列、より好ましくは配列番号3に対して少なくとも60%、好ましくは65、70、75、80、85、90、95、96、97、98、又は99%の同一性を有するアミノ酸配列を有するポリペプチド、よりなる群から選択される。
a) 配列番号33〜35よりなる群から選択されるアミノ酸配列を含む、又はそれからなるポリペプチド、及び、
b) FPPシンターゼ活性を示すとともに、配列番号33、34、又は35に対して少なくとも60%、好ましくは65、70、75、80、85、90、95、96、97、98、又は99%の同一性を有するアミノ酸配列を有するポリペプチド、よりなる群から選択される。
好ましくはネイティブCrtB遺伝子を過剰発現することで、フィトエンシンターゼ活性の増大を示すため、
好ましくはフィトエンデサチュラーゼをコードするCrtI遺伝子のすべて又は一部を欠失することで、フィトエンデサチュラーゼ活性の低下を示すため、
好ましくはネイティブFPPシンターゼ遺伝子を過剰発現することで、FPPシンターゼ活性の増大を示すため、
好ましくはデイノコッカスDXPシンターゼの変異体、より好ましくは配列番号31によってコードされる変異体を発現することで、DXPシンターゼ活性の増大を示すため、及び、
ネイティブidi遺伝子を過剰発現する、又は異種idi遺伝子を発現する、より好ましくは配列番号28によってコードされる酵素を発現することで、IPPイソメラーゼ活性の増大を示すため、遺伝子改変されている。
デイノコッカスジオサーマリス(Deinococcusgeothermalis)株は、フィトエンを産生するように遺伝子学的に操作された。フィトエンを産生する組換えD.ジオサーマリスを、カロテノイド経路の一部を妨害することによって取得した、すなわちフィトエンデサチュラーゼ(E.C.1.3.99.26、E.C.1.3.99.28、E.C.1.3.99.29、E.C.1.3.99.31)(crtl)遺伝子をノックアウトした。得られた構築物をシーケンシングによって確認した。
実施例1の組換えデイノコッカスジオサーマリス株は、
(i) Deinococcus yunweinensis由来の1−デオキシ−D−キシルロース5−リン酸シンターゼ(E.C.2.2.1.7)(DXS)のR238C突然変異体をコードする遺伝子と、
(ii) Deinococcus yunweinensis由来のイソペンテニル−二リン酸δ−イソメラーゼ(EC5.3.3.2)(IDI)をコードする遺伝子とを含む発現カセットを、染色体に挿入することでさらに改変した。
実施例1の組換えデイノコッカスジオサーマリス株は、
(i) Deinococcus yunweinensis由来の1−デオキシ−D−キシルロース5−リン酸シンターゼ(E.C.2.2.1.7)(DXS)のR238C突然変異体をコードする遺伝子と、
(ii) Deinococcus yunweinensis由来のイソペンテニル−二リン酸δ−イソメラーゼ(EC5.3.3.2)(IDI)をコードする遺伝子と、
(iii) デイノコッカスジオサーマリス由来のファルネシルピロリン酸シンターゼ(E.C.2.5.1.1,E.C.2.5.1.10, E.C.2.5.1.29)(FPPS)をコードする遺伝子と、
(iv) デイノコッカスジオサーマリス由来のフィトエンシンターゼ(EC2.5.1.32)(CrtB)をコードする遺伝子とを含む発現カセットを、染色体に挿入することでさらに改変した。
実施例1の組換えデイノコッカスジオサーマリス株は、
(i) Deinococcus yunweinensis由来の1−デオキシ−D−キシルロース5−リン酸シンターゼ(E.C.2.2.1.7)(DXS)のR238C突然変異体をコードする遺伝子と、
(ii) Deinococcus yunweinensis由来のイソペンテニル−二リン酸δ−イソメラーゼ(EC5.3.3.2)(IDI)をコードする遺伝子とを含む第1発現カセットと、
(iii) デイノコッカスジオサーマリス由来のファルネシルピロリン酸シンターゼ(E.C.2.5.1.1,E.C.2.5.1.10, E.C.2.5.1.29)(FPPS)をコードする遺伝子と、
(iv) デイノコッカスジオサーマリス由来のフィトエンシンターゼ(EC2.5.1.32)(CrtB)をコードする遺伝子とを含む発現カセットを、染色体に挿入することでさらに改変した。
実施例1の組換えデイノコッカスジオサーマリス株は、
(i) Deinococcus yunweinensis又はデイノコッカスジオサーマリス由来の1−デオキシ−D−キシルロース5−リン酸シンターゼ(E.C.2.2.1.7)(DXS)をコードする遺伝子と、
(ii) Deinococcus yunweinensis由来のイソペンテニル−二リン酸δ−イソメラーゼ(EC5.3.3.2)(IDI)をコードする遺伝子とを含む第1発現カセットと、
(iii) デイノコッカスジオサーマリス由来のファルネシルピロリン酸シンターゼ(E.C.2.5.1.1,E.C.2.5.1.10, E.C.2.5.1.29)(FPPS)をコードする遺伝子と、
(iv) デイノコッカスジオサーマリス由来のフィトエンシンターゼ(EC2.5.1.32)(CrtB)をコードする遺伝子とを含む発現カセットを、染色体に挿入することでさらに改変した。
実施例1の組換えデイノコッカスジオサーマリス株は、
(i) Deinococcus yunweinensis又はデイノコッカスジオサーマリス由来の1−デオキシ−D−キシルロース5−リン酸シンターゼ(E.C.2.2.1.7)(DXS)をコードする遺伝子と、
(ii) Deinococcus yunweinensis由来のイソペンテニル−二リン酸δ−イソメラーゼ(EC5.3.3.2)(IDI)をコードする遺伝子とを含む第1発現カセットと、
(iii) デイノコッカスジオサーマリス由来のファルネシルピロリン酸シンターゼ(E.C.2.5.1.1,E.C.2.5.1.10, E.C.2.5.1.29)(FPPS)をコードする遺伝子と、
(iv) デイノコッカスジオサーマリス由来のフィトエンシンターゼ(EC2.5.1.32)(CrtB)をコードする遺伝子とを含む発現カセットを、染色体に挿入することでさらに改変した。
Claims (23)
- フィトエンを産生する方法であって、フィトエンを産生するために適切な条件下で組換えデイノコッカス細菌を培養するステップと、任意的に前記フィトエンを回収するステップとを含み、前記組換えデイノコッカス細菌は、フィトエンシンターゼ活性の増大とフィトエンデサチュラーゼ活性の低下とを示すように遺伝子改変されている、方法。
- 前記組換えデイノコッカス細菌はいずれのフィトエンデサチュラーゼ活性も示さない、請求項1に記載の方法。
- 前記組換えデイノコッカス細菌は、フィトエンデサチュラーゼをコードする遺伝子を不活性化することで、好ましくは前記遺伝子のすべて若しくは一部を欠失すること、又はナンセンスコドン、カセット、遺伝子、若しくはフレームシフトを誘発する突然変異を導入することで、遺伝子改変される、請求項1又は2に記載の方法。
- 前記組換えデイノコッカス細菌は、フィトエンデサチュラーゼをコードする遺伝子のすべて又は一部を欠失することで遺伝子改変される、請求項3に記載の方法。
- 前記組換えデイノコッカス細菌は、フィトエンシンターゼをコードするネイティブ遺伝子を過剰発現するように遺伝子改変される、請求項1〜4のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌は、フィトエンシンターゼをコードする異種遺伝子、又はフィトエンシンターゼをコードするとともにコードした酵素のフィトエンシンターゼ活性を向上させる突然変異を含むネイティブ遺伝子を発現するように遺伝子改変される、請求項1〜4のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌は、フィードバック耐性フィトエンシンターゼをコードする遺伝子を発現するように遺伝子改変される、請求項1〜6のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌はFPPエンシンターゼ活性の増大をさらに示す、請求項1〜7のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌は、DXPシンターゼ活性及び/又はIPPイソメラーゼ活性の増大、好ましくはDXPシンターゼ活性及びIPPイソメラーゼ活性の増大をさらに示す、請求項1〜8のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌は、D.ジオサーマリス(D.geothermalis)、D.ムライ(D.murrayi)、D.グランディス(D.grandis)、D.アクアティカス(D.aquaticus)、D.インディカス(D.indicus)、D.セルロシリティカス(D.cellulosilyticus)、D.デポリメランス(D.depolymerans)、D.マリコペンシス(D.maricopensis)から選択されるデイノコッカス細菌である、請求項1〜9のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌はデイノコッカスジオサーマリス細菌である、請求項1〜10のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌は、少なくとも20mg/gDCW(乾燥細胞重量)のフィトエンを産生することができる、請求項1〜11のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌は、好気状態及び炭素源としてのグルコースの存在下で培養するとき、少なくとも20mg/gDCW(乾燥細胞重量)のフィトエンを産生することができる、請求項12に記載の方法。
- 前記組換えデイノコッカス細菌は、15−cisフィトエンであるフィトエンの一異性体のみを産生し、フィトフルエン、ζ−カロチン、ニューロスポレン、又はリコピンを産生しない、請求項1〜13のいずれかに記載の方法。
- 前記組換えデイノコッカス細菌は高温性のデイノコッカス、好ましくはD.ジオサーマリスであり、フィトエンを産生するために適切な条件下における前記組換えデイノコッカス細菌の前記培養は、40℃〜50℃、好ましくは45℃〜48℃に含まれる温度で行われる、請求項1〜14のいずれかに記載の方法。
- 請求項1〜15のいずれか1項に記載される、組換えデイノコッカス細菌。
- 好ましくは、フィトエンを含み、任意の検出可能な量のフィトフルエン、ζ−カロチン、ニューロスポレン、又はリコピンを含まない、請求項16に記載の組換えデイノコッカス細菌の細胞抽出物。
- 15−cisフィトエンであるフィトエンの一異性体のみを含む、請求項17に記載の細胞抽出物。
- 細胞膜を含む画分である、請求項17又は18に記載の細胞抽出物。
- フィトエンを産生するための請求項16に記載の組換えデイノコッカス細菌の使用。
- 請求項1〜15のいずれかに記載の方法によって取得したフィトエンを含み、任意の検出可能な量のフィトフルエン、ζ−カロチン、ニューロスポレン、又はリコピンを含まない、組成物。
- 前記組成物は、15−cisフィトエンであるフィトエンの一異性体のみを含む、請求項21に記載の組成物。
- 化粧料組成物、医薬組成物若しくはニュートラシューティカルズ組成物、ニュートリコスメティクス組成物、又は食品添加剤若しくは飼料添加剤である、請求項21又は22に記載の組成物。
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- 2017-12-15 BR BR112019012259A patent/BR112019012259A2/pt not_active IP Right Cessation
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2019
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EP3555302A1 (en) | 2019-10-23 |
AU2017378178A1 (en) | 2019-06-20 |
IL267285A (en) | 2019-08-29 |
MX2019007025A (es) | 2019-08-16 |
BR112019012259A2 (pt) | 2019-12-03 |
KR20190097093A (ko) | 2019-08-20 |
PH12019501325A1 (en) | 2019-09-30 |
CA3046436A1 (en) | 2018-06-21 |
WO2018109194A1 (en) | 2018-06-21 |
CN110168096A (zh) | 2019-08-23 |
US20190345520A1 (en) | 2019-11-14 |
EA201991474A1 (ru) | 2019-11-29 |
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